Query psy15974
Match_columns 165
No_of_seqs 110 out of 154
Neff 4.1
Searched_HMMs 13730
Date Fri Aug 16 17:47:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15974.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15974hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1afwa1 c.95.1.1 (A:25-293) Th 29.4 12 0.00087 28.8 2.1 22 96-117 89-110 (269)
2 d1pv9a2 d.127.1.1 (A:125-345) 28.5 16 0.0012 25.8 2.6 61 58-131 101-161 (221)
3 d1ulqa1 c.95.1.1 (A:3-275) Bet 25.4 14 0.00098 28.2 1.8 22 96-117 75-96 (273)
4 d1qy7a_ d.58.5.1 (A:) PII (pro 25.2 11 0.00081 25.6 1.1 18 90-107 16-33 (112)
5 d2cpwa1 a.5.2.1 (A:8-58) Cbl-i 20.0 15 0.0011 22.1 0.7 12 139-150 40-51 (51)
6 d1wdkc1 c.95.1.1 (C:2-263) Fat 17.1 27 0.0019 26.5 1.9 25 93-117 79-103 (262)
7 d2piia_ d.58.5.1 (A:) PII (pro 16.5 22 0.0016 23.8 1.1 20 90-109 16-35 (112)
8 d1vfja_ d.58.5.1 (A:) PII (pro 15.2 25 0.0018 23.8 1.1 18 91-108 17-34 (116)
9 d1e0na_ b.72.1.1 (A:) Hypothet 14.0 20 0.0014 19.3 0.2 11 7-17 5-15 (27)
10 d1m3ka1 c.95.1.1 (A:1-268) Bio 13.4 38 0.0028 25.6 1.9 25 93-117 74-98 (268)
No 1
>d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.36 E-value=12 Score=28.82 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=18.5
Q ss_pred hhhcCceEEehhhHHHHHHHhh
Q psy15974 96 SVAVPGLAINRICYLSRALFAR 117 (165)
Q Consensus 96 Sv~iPgfTIh~vv~~S~~~l~~ 117 (165)
..-+||+||||.|.-+..++..
T Consensus 89 p~~vpa~tVnr~CaSg~~Ai~~ 110 (269)
T d1afwa1 89 PYSTPFVALNRQCSSGLTAVND 110 (269)
T ss_dssp CTTSCEEEEECGGGHHHHHHHH
T ss_pred cccccchhccccchHHHHHHHH
Confidence 4679999999999988887654
No 2
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=28.49 E-value=16 Score=25.79 Aligned_cols=61 Identities=15% Similarity=0.193 Sum_probs=36.3
Q ss_pred EEecccchhHHHHhhhcccccchhHhHHHHHHHHHHhhhhhcCceEEehhhHHHHHHHhhccccceeeeeecee
Q psy15974 58 YVLADVTAKTIQAWHSTEHNAGRVAKIGIDALLWQSLASVAVPGLAINRICYLSRALFARWRQGQVATVVTGLV 131 (165)
Q Consensus 58 Yvl~D~~~kg~ka~~~~~~~~~~~~~~~~d~~vwQ~lASv~iPgfTIh~vv~~S~~~l~~~~~r~w~pT~iGLa 131 (165)
+++|+..++-.+.+. +-....+...+..-||.+..-+.+.....+++.....+..-.+|.+
T Consensus 101 ~~vG~~~~~~~~~~~-------------~~~~~~~~~~~~~kpG~~~~~v~~~~~~~~~~~g~~~~~~~~~Ghg 161 (221)
T d1pv9a2 101 IVVGSPNEKQREIYE-------------IVLEAQKRAVEAAKPGMTAKELDSIAREIIKEYGYGDYFIHSLGHG 161 (221)
T ss_dssp EESSSCCHHHHHHHH-------------HHHHHHHHHHHHCCTTCBHHHHHHHHHHHHHHTTCGGGCCSCSEEE
T ss_pred eecCCccHHHHHHHH-------------HHHHHHHHHHHHcCCCCcHHHHHHHHHhhhhhcccCCceeccccCC
Confidence 355776665555542 1223344556788899999999888888887733333333334443
No 3
>d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]}
Probab=25.44 E-value=14 Score=28.23 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=17.8
Q ss_pred hhhcCceEEehhhHHHHHHHhh
Q psy15974 96 SVAVPGLAINRICYLSRALFAR 117 (165)
Q Consensus 96 Sv~iPgfTIh~vv~~S~~~l~~ 117 (165)
..-+||+||||.|.-+...+..
T Consensus 75 p~~vp~~tVn~~CaSg~~Ai~~ 96 (273)
T d1ulqa1 75 PVEVAGCTVNRLCGSGLEAVAQ 96 (273)
T ss_dssp CTTCEEEEEECGGGHHHHHHHH
T ss_pred CCccceEEEecccchHHHHHHH
Confidence 3567999999999988877654
No 4
>d1qy7a_ d.58.5.1 (A:) PII (product of glnB) {Cyanobacteria (Synechococcus sp.) pcc 7942 [TaxId: 1131]}
Probab=25.23 E-value=11 Score=25.58 Aligned_cols=18 Identities=11% Similarity=0.407 Sum_probs=15.2
Q ss_pred HHHHhhhhhcCceEEehh
Q psy15974 90 LWQSLASVAVPGLAINRI 107 (165)
Q Consensus 90 vwQ~lASv~iPgfTIh~v 107 (165)
+=|+|..+++||||++.+
T Consensus 16 v~~AL~~~G~~g~Tv~~v 33 (112)
T d1qy7a_ 16 VKIALVNAGIVGMTVSEV 33 (112)
T ss_dssp HHHHHHHTTCCCCEEEEE
T ss_pred HHHHHHhCCCCcEEEeee
Confidence 446788899999999986
No 5
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.99 E-value=15 Score=22.14 Aligned_cols=12 Identities=8% Similarity=-0.052 Sum_probs=8.3
Q ss_pred cchhHHHHHHhh
Q psy15974 139 PIDWAVTEAMDL 150 (165)
Q Consensus 139 PID~~Vd~~md~ 150 (165)
-+|.++||+|++
T Consensus 40 ~ve~A~~WLl~H 51 (51)
T d2cpwa1 40 SVQTACDWLFSH 51 (51)
T ss_dssp CHHHHHHHHHSC
T ss_pred CHHHHHHHHHcC
Confidence 367788888763
No 6
>d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]}
Probab=17.12 E-value=27 Score=26.54 Aligned_cols=25 Identities=12% Similarity=0.205 Sum_probs=19.3
Q ss_pred HhhhhhcCceEEehhhHHHHHHHhh
Q psy15974 93 SLASVAVPGLAINRICYLSRALFAR 117 (165)
Q Consensus 93 ~lASv~iPgfTIh~vv~~S~~~l~~ 117 (165)
+--...+||+||||.|.-+...+..
T Consensus 79 ag~p~~vp~~tV~~~C~Sgl~Ai~~ 103 (262)
T d1wdkc1 79 TQIPHTSAAQTVSRLCGSSMSALHT 103 (262)
T ss_dssp SSSCTTSEEEEEECGGGHHHHHHHH
T ss_pred hhcccccchhhccccccHHHHHHHH
Confidence 3344568999999999988877654
No 7
>d2piia_ d.58.5.1 (A:) PII (product of glnB) {Escherichia coli [TaxId: 562]}
Probab=16.48 E-value=22 Score=23.81 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=15.9
Q ss_pred HHHHhhhhhcCceEEehhhH
Q psy15974 90 LWQSLASVAVPGLAINRICY 109 (165)
Q Consensus 90 vwQ~lASv~iPgfTIh~vv~ 109 (165)
+=|+|..+++||||+.++--
T Consensus 16 v~~aL~~~Gv~g~Tv~~v~G 35 (112)
T d2piia_ 16 VREALAEVGITGMTVTEVKG 35 (112)
T ss_dssp HHHHHHHHTCCCCEEEEEEE
T ss_pred HHHHHHhCCCCcEEEEEccC
Confidence 44678889999999998643
No 8
>d1vfja_ d.58.5.1 (A:) PII (product of glnB) {Thermus thermophilus [TaxId: 274]}
Probab=15.16 E-value=25 Score=23.81 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=14.8
Q ss_pred HHHhhhhhcCceEEehhh
Q psy15974 91 WQSLASVAVPGLAINRIC 108 (165)
Q Consensus 91 wQ~lASv~iPgfTIh~vv 108 (165)
=|+|..+++||||+..+-
T Consensus 17 ~~aL~~~Gv~g~Tv~~v~ 34 (116)
T d1vfja_ 17 LKALFQAEVRGLTLSRVQ 34 (116)
T ss_dssp HHHHHHTTCCCCEEEEEE
T ss_pred HHHHHhCCCCcEEEEeeE
Confidence 367888999999999764
No 9
>d1e0na_ b.72.1.1 (A:) Hypothetical protein Yjq8 (Set2p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.97 E-value=20 Score=19.30 Aligned_cols=11 Identities=36% Similarity=0.815 Sum_probs=8.8
Q ss_pred cccCCCCCcch
Q psy15974 7 NCFDNGAPKYF 17 (165)
Q Consensus 7 ~~~~~g~~~~~ 17 (165)
|-+|||.|.|-
T Consensus 5 iihengrpmyy 15 (27)
T d1e0na_ 5 IIHENGRPLYY 15 (27)
T ss_dssp EEESSSSEEEE
T ss_pred eeecCCceeee
Confidence 45799999885
No 10
>d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]}
Probab=13.42 E-value=38 Score=25.63 Aligned_cols=25 Identities=8% Similarity=-0.025 Sum_probs=19.4
Q ss_pred HhhhhhcCceEEehhhHHHHHHHhh
Q psy15974 93 SLASVAVPGLAINRICYLSRALFAR 117 (165)
Q Consensus 93 ~lASv~iPgfTIh~vv~~S~~~l~~ 117 (165)
+-....+||+||||.|.-+...+..
T Consensus 74 aglp~~vpa~tv~~~C~Sg~~Ai~~ 98 (268)
T d1m3ka1 74 AGVPQEATAWGMNQLAGSGLRAVAL 98 (268)
T ss_dssp TTCCTTSEEEEEECGGGHHHHHHHH
T ss_pred hCCcccccceeecccCcccchHHHH
Confidence 3445678999999999988777654
Done!