RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15974
(165 letters)
>gnl|CDD|220808 pfam10558, MTP18, Mitochondrial 18 KDa protein (MTP18). This
family of proteins are mitochondrial 18KDa proteins that
are often misannotated as carbonic anhydrases. It was
shown that knockdown of MTP18 protein results in a
cytochrome c release from mitochondria and consequently
leads to apoptosis. Overexpression studies suggest that
MTP18 is required for mitochondrial fission.
Length = 148
Score = 126 bits (319), Expect = 6e-38
Identities = 47/136 (34%), Positives = 69/136 (50%), Gaps = 7/136 (5%)
Query: 20 RQIVSIFIFTRYANEVGEAFRAVVHRQVVNASYGIASLYVLADVTAKTIQAWHSTEHNAG 79
R I+S + YA+++GEAFR VV +V ASYG++ YVL DV+ K +A+ E
Sbjct: 13 RTILSAHRYVGYASDIGEAFRPVVPPYLVKASYGVSWSYVLGDVSDKGYKAYLKNEGVPS 72
Query: 80 ---RVAKIGIDALLWQSLASVAVPGLAINRICYLSRALFARWRQGQV----ATVVTGLVS 132
A + +D +WQSLASV +P I+ I S + + GL +
Sbjct: 73 KATDYAVVMVDRAVWQSLASVGLPAFTIHSIVRYSGLALKNSTKNPLLRTWGPTALGLAA 132
Query: 133 IPCVIHPIDWAVTEAM 148
IP + +PID V A+
Sbjct: 133 IPFLPYPIDEPVDHAV 148
>gnl|CDD|227618 COG5301, COG5301, Phage-related tail fibre protein [General
function prediction only].
Length = 587
Score = 31.1 bits (70), Expect = 0.24
Identities = 17/82 (20%), Positives = 22/82 (26%), Gaps = 2/82 (2%)
Query: 10 DNGAPKYFLDRQIVSIFIFTRYANEVGEAFRA-VVHRQVVNAS-YGIASLYVLADVTAKT 67
N P S FI+ G F A N Y + +V +
Sbjct: 440 GNNYPIVRAVGAASSNFIYQTNQAYTGNTFYAGCWGAGDFNPGDYLLIFGFVWNNGPGIL 499
Query: 68 IQAWHSTEHNAGRVAKIGIDAL 89
A N VA+ I A
Sbjct: 500 PGAGGGVGINTSAVARSTIGAG 521
>gnl|CDD|224437 COG1520, COG1520, FOG: WD40-like repeat [Function unknown].
Length = 370
Score = 28.7 bits (64), Expect = 1.4
Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 10/94 (10%)
Query: 5 NVNCFD--NGAP--KYFLDRQIVSI-FIFTRYANEVGEAFRAVVHRQVVNASYGIASLYV 59
+ C D G + + T A G+ + N G SLY
Sbjct: 261 KLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYIG----FTDNDGRGSGSLYA 316
Query: 60 LADVTAKTIQAWHSTEHNAGRVA-KIGIDALLWQ 92
LADV T+ W ++ G D L+
Sbjct: 317 LADVPGGTLLKWSYPVGGGYSLSTVAGSDGTLYF 350
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome
partitioning].
Length = 1480
Score = 28.7 bits (64), Expect = 1.9
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 40 RAVVHRQVVNASYGIASLYVLADVTAKTIQAWHSTEH 76
RA+ ++Q + A L L D+TA + + W T
Sbjct: 412 RAIQYQQAIAALERAKELCHLPDLTADSAEEWLETFQ 448
>gnl|CDD|173054 PRK14590, rimM, 16S rRNA-processing protein RimM; Provisional.
Length = 171
Score = 27.1 bits (60), Expect = 3.7
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 129 GLVSIPCVIHPIDWAVTEAMDLTVRPYLLHVRVNKEE 165
GL +I P++W +T+ D P L+ ++ EE
Sbjct: 104 GLQAIDETGKPLNWKLTDVQDNPAHPILVFIKGEGEE 140
>gnl|CDD|225357 COG2766, PrkA, Putative Ser protein kinase [Signal transduction
mechanisms].
Length = 649
Score = 27.4 bits (61), Expect = 4.5
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 9 FDNGAPKYFLDRQIVSIFIFTRYANEVGEAF 39
N APK F R + F+ A G+
Sbjct: 549 ISNDAPKDF--RNEIVNFVLRARARRNGKNP 577
>gnl|CDD|215146 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme.
Length = 668
Score = 26.6 bits (59), Expect = 6.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 31 YANEVGEAFRAVVHRQVVNASYGI 54
Y +V EAF V+H+ V Y I
Sbjct: 227 YCEDVAEAFEVVLHKGEVGHVYNI 250
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 26.7 bits (60), Expect = 7.5
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 109 YLSRALFARWRQGQ-VATVVTGLVSIPCVIHP-IDWAVTEAMDLTVRP 154
+RA +A+ + G + + HP +D D+++
Sbjct: 278 IFARARYAKALKATFPLFNDEGKIDLRQARHPLLDGEKVVPKDISLGF 325
>gnl|CDD|182581 PRK10600, PRK10600, nitrate/nitrite sensor protein NarX;
Provisional.
Length = 569
Score = 26.6 bits (59), Expect = 8.7
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 72 HSTEHNAGRVAKIGIDALLWQSLASVAVPGLAINRICYLSRALFARWRQ 120
H+TE V + + +V + L + I +L R L WRQ
Sbjct: 114 HTTEMRIETVVLV-------HRVFAVFMALLLVFTIIWLRRRLLQPWRQ 155
>gnl|CDD|192905 pfam11982, DUF3483, Domain of unknown function (DUF3483). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria. This domain is about 230
amino acids in length. This domain is found associated
with pfam02754.
Length = 224
Score = 26.2 bits (58), Expect = 9.2
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 12/49 (24%)
Query: 88 ALLWQSLASVAVPGLAINRICYLSRALFARWRQGQVATV--VTGLVSIP 134
L+W +LA AV L A WRQG+ + V + GL+++P
Sbjct: 8 ILIWLALALAAVGALRR----------VALWRQGRASKVDWLGGLLAMP 46
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.136 0.424
Gapped
Lambda K H
0.267 0.0688 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,314,213
Number of extensions: 746093
Number of successful extensions: 738
Number of sequences better than 10.0: 1
Number of HSP's gapped: 736
Number of HSP's successfully gapped: 16
Length of query: 165
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 75
Effective length of database: 6,945,742
Effective search space: 520930650
Effective search space used: 520930650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.0 bits)