RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15974
         (165 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 35/131 (26%)

Query: 54  IASLY--------VLADVTAKTIQAWHSTEHNAGRVAKIGIDALLW----------QSLA 95
           +  LY         L   +A+T+     T  +A +V   G++ L W            L 
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232

Query: 96  SVAV--PGLAINRIC-Y--------LSRALFARWRQGQVATVVTGLVSIPCVIHPIDW-- 142
           S+ +  P + + ++  Y         +      + +G       GLV+   +     W  
Sbjct: 233 SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG-ATGHSQGLVTAVAIAETDSWES 291

Query: 143 ---AVTEAMDL 150
              +V +A+ +
Sbjct: 292 FFVSVRKAITV 302



 Score = 29.2 bits (65), Expect = 0.70
 Identities = 23/177 (12%), Positives = 49/177 (27%), Gaps = 70/177 (39%)

Query: 31   YANEVGEAFRAVVHR--QVVNASYGIASLYVLADV-TAKTIQAWHSTEHNAGRVAKIGI- 86
            Y     +A + V +R       +YG + L ++ +     TI       H  G   K  I 
Sbjct: 1636 YKTS--KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTI-------HFGGEKGK-RIR 1685

Query: 87   ---DALLWQSLASVAVPGLAI--------NRICY-------------------LSRALFA 116
                A++++++    +    I            +                   + +A F 
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE 1745

Query: 117  RWR-QG--QVATVVTG--------LVSIPCVIHPIDWAVTEAMDL--TVRPYLLHVR 160
              + +G         G        L            ++ + M +   V   ++  R
Sbjct: 1746 DLKSKGLIPADATFAGHSLGEYAALA-----------SLADVMSIESLVE--VVFYR 1789



 Score = 27.7 bits (61), Expect = 2.2
 Identities = 30/194 (15%), Positives = 54/194 (27%), Gaps = 67/194 (34%)

Query: 10  DNGAPKYFL-----DRQIVSIFIFTRYANEVGEAFRAVV------HRQVVNASYGIASLY 58
           + G P   L      ++ V  ++     N    A + V        + +V +     SLY
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYV--NKTNSHLPAGKQVEISLVNGAKNLVVSGP-PQSLY 387

Query: 59  VL------ADVTAKTIQA---------------------WHSTEHNAGRVAKIGIDALLW 91
            L      A   +   Q+                     +HS          I  D  L 
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS-HLLVPASDLINKD--LV 444

Query: 92  QSLASVAVPGLAINRICYLSRALF-----ARWRQGQVATVVTGLVSIPCVIH-PIDWAVT 145
           ++  S     + I         ++     +  R     ++   +V   C+I  P+ W  T
Sbjct: 445 KNNVSFNAKDIQI--------PVYDTFDGSDLRVLS-GSISERIV--DCIIRLPVKWETT 493

Query: 146 EAMDLTVRPYLLHV 159
                T      H+
Sbjct: 494 TQFKAT------HI 501


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.3 bits (67), Expect = 0.17
 Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 11/34 (32%)

Query: 75  EHNAGRVAKIGIDALLWQSL---ASVAVPGLAIN 105
           E  A  + K      L  SL   A  + P LAI 
Sbjct: 18  EKQA--LKK------LQASLKLYADDSAPALAIK 43


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 30.2 bits (67), Expect = 0.29
 Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 34/146 (23%)

Query: 33  NEVGEAFRAVVHRQVVNASYGIASLYVLADV-TAKTIQAWHSTEHNAG-------RVAKI 84
           + +    R    R + +  Y    L VL +V  AK   A+     N         R  ++
Sbjct: 228 HSIQAELR----RLLKSKPYEN-CLLVLLNVQNAKAWNAF-----NLSCKILLTTRFKQV 277

Query: 85  GIDALLWQSLASVAV----PGLAINRICYLSRALFARWRQGQVATVVTGLVSIPCVIHPI 140
             D L   +   +++      L  +      ++L  ++    +      L       +P 
Sbjct: 278 -TDFLSAATTTHISLDHHSMTLTPDE----VKSLLLKY----LDCRPQDLPREVLTTNPR 328

Query: 141 DWAVTEAM--DLTVRP-YLLHVRVNK 163
             ++      D         HV  +K
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDK 354



 Score = 26.7 bits (58), Expect = 4.1
 Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 23/81 (28%)

Query: 40  RAVVHRQVVNASYGIASLYVLADVTAKTIQ---AWHSTEH-----NAGRV---------- 81
              +HR +V+  Y I   +   D+    +      H   H     +  R+          
Sbjct: 442 EYALHRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500

Query: 82  ----AKIGIDALLWQSLASVA 98
                KI  D+  W +  S+ 
Sbjct: 501 RFLEQKIRHDSTAWNASGSIL 521


>3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum.,
           structural genomics, PSI-2, protein structure
           initiative; 2.50A {Corynebacterium glutamicum}
          Length = 307

 Score = 26.1 bits (57), Expect = 6.1
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 112 RALFARWRQGQVATVVTGLVSIPCVIHPIDWAVTEAMDLTVRPYLLHVRVNKEE 165
            A FA W        V GL     +++P D  V  A+D   R  L+H  + +  
Sbjct: 252 DATFASWEHALTLPGVRGLTVGRTLLYPQDGDVAAAVDTAAR--LVHTDIQQFT 303


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0557    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,568,380
Number of extensions: 143323
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 8
Length of query: 165
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 79
Effective length of database: 4,300,587
Effective search space: 339746373
Effective search space used: 339746373
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.6 bits)