RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15974
         (165 letters)



>d1uc2a_ d.261.1.1 (A:) Hypothetical protein PH1602 {Archaeon
           Pyrococcus horikoshii [TaxId: 53953]}
          Length = 480

 Score = 27.3 bits (60), Expect = 0.98
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 34  EVGEAFRAVVHRQVVNASYGIASLYVLADVTAKTIQAWHSTEHNAGRV 81
            V   +R V    ++  S G AS Y+LA       + + ST H AGRV
Sbjct: 362 AVPRLYRDVGQPVLIPGSMGTAS-YILAGTEGAMKETFGSTCHGAGRV 408


>d1d4ua1 a.6.1.2 (A:37-111) DNA repair factor XPA DNA- and
          RPA-binding domain, C-terminal subdomain {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 75

 Score = 25.4 bits (56), Expect = 1.4
 Identities = 6/27 (22%), Positives = 15/27 (55%)

Query: 49 NASYGIASLYVLADVTAKTIQAWHSTE 75
          ++ +G   LY+   +  ++++ W S E
Sbjct: 39 HSQWGDMKLYLKLQIVKRSLEVWGSQE 65


>d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas
           mobilis [TaxId: 542]}
          Length = 204

 Score = 25.2 bits (54), Expect = 3.5
 Identities = 6/26 (23%), Positives = 13/26 (50%)

Query: 140 IDWAVTEAMDLTVRPYLLHVRVNKEE 165
           +  A+  A+  T  P L+   + +E+
Sbjct: 156 LAEAIKVALANTDGPTLIECFIGRED 181


>d1o1xa_ c.121.1.1 (A:) Putative sugar-phosphate isomerase
           {Thermotoga maritima [TaxId: 2336]}
          Length = 145

 Score = 23.7 bits (51), Expect = 8.8
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 31  YANEVGEAFRAVVHRQVVNAS-YGIASLYVLADVTAKTIQAWHSTEHNAG----RVAKI 84
            A        A + R   NA+   +    + A++    +  + ST  + G    R+ KI
Sbjct: 84  RAALCLFPDMARLARSHNNANILVLPGRLIGAELAFWIVDTFLSTPFDGGRHERRIRKI 142


>d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal
          domain {Bacillus cereus [TaxId: 1396]}
          Length = 244

 Score = 24.3 bits (53), Expect = 8.8
 Identities = 6/33 (18%), Positives = 13/33 (39%)

Query: 57 LYVLADVTAKTIQAWHSTEHNAGRVAKIGIDAL 89
          + V+ DV          +  +    A++G D +
Sbjct: 64 MEVILDVAPAVFDQLGISYSDLSFFAELGADGI 96


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0472    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 605,064
Number of extensions: 24161
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 6
Length of query: 165
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 86
Effective length of database: 1,322,926
Effective search space: 113771636
Effective search space used: 113771636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.3 bits)