BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15975
(312 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WD2|A Chain A, Solution Structure Of The C-Terminal Ring From A Ring-Ibr-
Ring (Triad) Motif
Length = 60
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 53/59 (89%), Positives = 58/59 (98%)
Query: 107 WIAANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCNRYDE 165
WIAANTKECPKC VTIEKDGGCNHMVC+NQ+CKAEFCWVCLGPWEPHGS+WY+CNRY+E
Sbjct: 1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGSAWYNCNRYNE 59
>pdb|1AQU|A Chain A, Estrogen Sulfotransferase With Bound Inactive Cofactor Pap
And 17-Beta Estradiol
pdb|1AQU|B Chain B, Estrogen Sulfotransferase With Bound Inactive Cofactor Pap
And 17-Beta Estradiol
pdb|1AQY|A Chain A, Estrogen Sulfotransferase With Pap
pdb|1AQY|B Chain B, Estrogen Sulfotransferase With Pap
pdb|1BO6|A Chain A, Estrogen Sulfotransferase With Inactive Cofactor Pap And
Vanadate
pdb|1BO6|B Chain B, Estrogen Sulfotransferase With Inactive Cofactor Pap And
Vanadate
Length = 297
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 245 YTYVFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANIKQQV 296
Y +V A++ + N VLF ED ++D+ KL E+LER ++E + I Q
Sbjct: 175 YDHVKAWWEKSKNSRVLFMFYEDMKEDIRREVVKLIEFLERKPSAELVDRIIQHT 229
>pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORW|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|2BUA|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUC|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2AJ8|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJB|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJC|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJD|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
Length = 728
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 68/202 (33%), Gaps = 46/202 (22%)
Query: 18 RLVRDPKVKLKYQHLITNSFVECNRLLRWCPSPDCNNAIKVQHVEARPVVCKCGHRFCFA 77
+ VR P K ++ FV R L SP NA + P G +
Sbjct: 212 KTVRIPYPKAGAENPTVKFFVVDTRTL----SP---NASVTSYQIVPPASVLIGDHYL-- 262
Query: 78 CGENWHDPVRCSLLRRWIKK---------CDDDSETSNWIAANTKECPKCLVT------- 121
CG W R SL +WI++ CD D T WI++ ++ + T
Sbjct: 263 CGVTWVTEERISL--QWIRRAQNYSIIDICDYDESTGRWISSVARQHIEISTTGWVGRFR 320
Query: 122 ----------------IEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCN--RY 163
I + G H +C Q+ K+ ++ G WE G + + Y
Sbjct: 321 PAEPHFTSDGNSFYKIISNEEGYKH-ICHFQTDKSNCTFITKGAWEVIGIEALTSDYLYY 379
Query: 164 DEEEAKVARGAQERSRAALQRY 185
E K G + R L Y
Sbjct: 380 ISNEHKGMPGGRNLYRIQLNDY 401
>pdb|2H8K|A Chain A, Human Sulfotranferase Sult1c3 In Complex With Pap
pdb|2H8K|B Chain B, Human Sulfotranferase Sult1c3 In Complex With Pap
Length = 306
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 245 YTYVFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANI 292
+ +V ++ K+ +L+ ED +KD + EK+ ++LE+DI+ E L I
Sbjct: 184 FDHVKGWWAAKDMHRILYLFYEDIKKDPKREIEKILKFLEKDISEEILNKI 234
>pdb|2REO|A Chain A, Crystal Structure Of Human Sulfotransferase 1c3 (Sult1c3)
In Complex With Pap
Length = 305
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 245 YTYVFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANI 292
+ +V ++ K+ +L+ ED +KD + EK+ ++LE+DI+ E L I
Sbjct: 183 FDHVKGWWAAKDMHRILYLFYEDIKKDPKREIEKILKFLEKDISEEILNKI 233
>pdb|2JMO|A Chain A, Ibr Domain Of Human Parkin
Length = 80
Score = 28.1 bits (61), Expect = 7.2, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 47 CPSPDCNNAIKVQHVEARPVVCK------CGHRFCFACGENWHD 84
CP P C + + + R V C+ CG FC C E +H+
Sbjct: 28 CPRPGCGAGL-LPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,341,477
Number of Sequences: 62578
Number of extensions: 370763
Number of successful extensions: 1106
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1099
Number of HSP's gapped (non-prelim): 20
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)