Query psy15975
Match_columns 312
No_of_seqs 235 out of 1295
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 17:48:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15975.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15975hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wd2_A Ariadne-1 protein homol 99.9 5.4E-25 1.8E-29 157.2 2.3 59 107-165 1-59 (60)
2 2ct7_A Ring finger protein 31; 99.6 2.2E-17 7.5E-22 126.4 -2.6 79 22-103 3-85 (86)
3 2jmo_A Parkin; IBR, E3 ligase, 99.4 1.7E-15 5.9E-20 114.2 -5.3 67 22-91 4-76 (80)
4 2ct7_A Ring finger protein 31; 97.9 2.9E-06 9.8E-11 64.3 1.5 50 111-164 24-74 (86)
5 2jmo_A Parkin; IBR, E3 ligase, 97.7 1.4E-05 4.6E-10 59.7 2.7 40 111-152 24-70 (80)
6 4ap4_A E3 ubiquitin ligase RNF 96.7 6.1E-05 2.1E-09 60.2 -3.5 102 45-154 8-113 (133)
7 1wd2_A Ariadne-1 protein homol 95.5 0.0055 1.9E-07 42.9 1.9 37 43-82 5-44 (60)
8 2ysl_A Tripartite motif-contai 90.5 0.07 2.4E-06 37.7 0.8 42 112-161 20-61 (73)
9 2ysj_A Tripartite motif-contai 90.2 0.037 1.3E-06 38.1 -0.9 42 112-161 20-61 (63)
10 3vk6_A E3 ubiquitin-protein li 89.8 0.11 3.8E-06 39.9 1.4 50 46-127 3-52 (101)
11 1g25_A CDK-activating kinase a 89.6 0.12 4.1E-06 35.7 1.4 35 66-125 22-56 (65)
12 3lrq_A E3 ubiquitin-protein li 89.2 0.062 2.1E-06 40.9 -0.4 40 113-161 23-62 (100)
13 3lrq_A E3 ubiquitin-protein li 89.2 0.084 2.9E-06 40.1 0.4 27 46-80 24-51 (100)
14 2jrp_A Putative cytoplasmic pr 88.4 0.27 9.4E-06 36.3 2.7 46 113-162 3-56 (81)
15 4ayc_A E3 ubiquitin-protein li 88.1 0.1 3.5E-06 42.1 0.2 27 46-80 55-81 (138)
16 2ckl_B Ubiquitin ligase protei 87.3 0.29 9.8E-06 40.5 2.5 45 46-123 56-101 (165)
17 1e4u_A Transcriptional repress 87.2 0.22 7.4E-06 36.3 1.5 51 45-124 12-62 (78)
18 2ct2_A Tripartite motif protei 87.1 0.073 2.5E-06 38.9 -1.2 46 112-161 15-60 (88)
19 3fl2_A E3 ubiquitin-protein li 87.0 0.18 6.1E-06 39.7 1.0 46 46-124 54-99 (124)
20 2egp_A Tripartite motif-contai 86.7 0.22 7.7E-06 35.5 1.4 33 113-153 13-45 (79)
21 1t1h_A Gspef-atpub14, armadill 86.6 0.27 9.4E-06 35.1 1.7 46 45-123 9-54 (78)
22 2ecy_A TNF receptor-associated 86.1 0.25 8.5E-06 34.2 1.3 50 43-125 14-63 (66)
23 4ap4_A E3 ubiquitin ligase RNF 86.0 0.055 1.9E-06 42.6 -2.5 34 66-125 93-126 (133)
24 2ysl_A Tripartite motif-contai 85.7 0.17 5.7E-06 35.6 0.2 50 45-125 21-70 (73)
25 4ayc_A E3 ubiquitin-protein li 85.6 0.2 6.7E-06 40.3 0.6 38 113-161 54-91 (138)
26 3qt1_I DNA-directed RNA polyme 85.6 0.27 9.4E-06 39.7 1.5 31 42-74 22-56 (133)
27 1pft_A TFIIB, PFTFIIBN; N-term 85.4 0.66 2.3E-05 30.6 3.1 30 111-142 4-34 (50)
28 1iym_A EL5; ring-H2 finger, ub 85.4 0.28 9.4E-06 32.4 1.2 43 112-161 5-47 (55)
29 3l11_A E3 ubiquitin-protein li 85.0 0.41 1.4E-05 36.9 2.2 39 114-162 17-55 (115)
30 2ecj_A Tripartite motif-contai 84.9 0.17 6E-06 33.7 -0.0 42 112-161 15-56 (58)
31 1vq8_Z 50S ribosomal protein L 84.5 0.44 1.5E-05 35.3 2.0 36 112-152 27-62 (83)
32 2ckl_B Ubiquitin ligase protei 84.2 0.17 5.7E-06 41.9 -0.5 34 113-153 55-88 (165)
33 1jm7_A BRCA1, breast cancer ty 84.1 0.19 6.5E-06 38.4 -0.1 41 113-161 22-62 (112)
34 1x4j_A Ring finger protein 38; 83.8 0.23 8E-06 35.2 0.3 34 68-127 42-75 (75)
35 2ecy_A TNF receptor-associated 83.8 0.21 7.3E-06 34.5 -0.0 32 113-152 16-47 (66)
36 2ckl_A Polycomb group ring fin 83.4 0.22 7.6E-06 38.1 -0.0 35 113-154 16-50 (108)
37 2y43_A E3 ubiquitin-protein li 83.4 0.21 7.2E-06 37.6 -0.2 39 113-161 23-61 (99)
38 3j20_Y 30S ribosomal protein S 83.0 0.42 1.4E-05 31.9 1.2 31 110-142 17-47 (50)
39 3ng2_A RNF4, snurf, ring finge 83.0 0.27 9.3E-06 34.2 0.3 53 45-125 11-64 (71)
40 2djb_A Polycomb group ring fin 82.9 0.19 6.5E-06 35.5 -0.6 33 113-152 16-48 (72)
41 3fl2_A E3 ubiquitin-protein li 82.9 0.21 7.1E-06 39.3 -0.4 39 113-161 53-91 (124)
42 1jm7_B BARD1, BRCA1-associated 82.9 0.57 2E-05 36.3 2.2 31 45-82 23-53 (117)
43 4ic3_A E3 ubiquitin-protein li 82.7 0.33 1.1E-05 34.6 0.7 29 66-124 38-67 (74)
44 1bor_A Transcription factor PM 82.6 0.61 2.1E-05 31.2 2.0 13 69-81 23-35 (56)
45 3hcs_A TNF receptor-associated 82.5 0.24 8.1E-06 41.1 -0.2 31 44-82 18-48 (170)
46 1chc_A Equine herpes virus-1 r 82.5 0.25 8.5E-06 34.2 -0.1 34 112-152 5-38 (68)
47 2jne_A Hypothetical protein YF 82.5 0.5 1.7E-05 35.9 1.6 47 112-162 32-86 (101)
48 2ct2_A Tripartite motif protei 82.4 0.61 2.1E-05 33.8 2.1 54 45-125 16-69 (88)
49 2k4x_A 30S ribosomal protein S 82.2 0.51 1.8E-05 32.1 1.5 31 110-142 16-46 (55)
50 1z6u_A NP95-like ring finger p 81.7 0.74 2.5E-05 37.6 2.5 47 45-124 79-125 (150)
51 1t1h_A Gspef-atpub14, armadill 81.7 0.3 1E-05 34.8 0.1 39 113-161 9-47 (78)
52 2jr6_A UPF0434 protein NMA0874 81.5 0.87 3E-05 32.4 2.5 30 111-142 7-36 (68)
53 3hct_A TNF receptor-associated 81.2 0.31 1.1E-05 37.9 0.1 29 45-81 19-47 (118)
54 2d8t_A Dactylidin, ring finger 81.1 0.41 1.4E-05 33.5 0.7 40 112-162 15-54 (71)
55 2yur_A Retinoblastoma-binding 81.1 0.28 9.7E-06 34.8 -0.2 41 113-161 16-56 (74)
56 2ecm_A Ring finger and CHY zin 80.7 0.37 1.3E-05 31.7 0.3 38 113-154 6-43 (55)
57 3ng2_A RNF4, snurf, ring finge 80.4 0.21 7.2E-06 34.8 -1.1 40 112-153 10-50 (71)
58 3l11_A E3 ubiquitin-protein li 80.2 0.44 1.5E-05 36.7 0.6 30 46-83 17-46 (115)
59 1rmd_A RAG1; V(D)J recombinati 80.0 0.73 2.5E-05 35.5 1.8 27 46-80 25-51 (116)
60 2ckl_A Polycomb group ring fin 79.9 0.38 1.3E-05 36.7 0.2 27 45-79 16-43 (108)
61 1wim_A KIAA0161 protein; ring 79.3 1.2 4.1E-05 33.0 2.8 34 7-41 58-93 (94)
62 1e4u_A Transcriptional repress 79.1 0.48 1.7E-05 34.4 0.5 43 113-161 12-54 (78)
63 2ect_A Ring finger protein 126 79.0 0.66 2.2E-05 33.0 1.2 48 46-124 17-64 (78)
64 2kiz_A E3 ubiquitin-protein li 79.0 0.36 1.2E-05 33.5 -0.2 39 111-154 13-51 (69)
65 2y43_A E3 ubiquitin-protein li 78.3 0.34 1.2E-05 36.3 -0.6 27 46-80 24-51 (99)
66 2xeu_A Ring finger protein 4; 77.6 0.3 1E-05 33.2 -1.0 39 113-153 4-43 (64)
67 3ztg_A E3 ubiquitin-protein li 77.6 0.32 1.1E-05 35.9 -0.9 33 113-152 14-46 (92)
68 1jm7_B BARD1, BRCA1-associated 77.4 0.96 3.3E-05 35.0 1.8 35 111-152 21-55 (117)
69 1jm7_A BRCA1, breast cancer ty 77.4 0.9 3.1E-05 34.5 1.6 27 46-80 23-49 (112)
70 1x4j_A Ring finger protein 38; 77.4 0.41 1.4E-05 33.9 -0.4 37 112-153 23-59 (75)
71 2ecn_A Ring finger protein 141 77.2 0.43 1.5E-05 33.2 -0.3 38 112-161 15-52 (70)
72 2ect_A Ring finger protein 126 76.8 0.84 2.9E-05 32.4 1.2 38 112-154 15-52 (78)
73 2csy_A Zinc finger protein 183 75.2 0.44 1.5E-05 34.3 -0.7 33 113-153 16-48 (81)
74 2ea6_A Ring finger protein 4; 74.6 0.38 1.3E-05 33.1 -1.1 39 112-152 15-54 (69)
75 2l0b_A E3 ubiquitin-protein li 74.5 0.44 1.5E-05 35.3 -0.8 42 112-161 40-81 (91)
76 3hcs_A TNF receptor-associated 74.5 0.64 2.2E-05 38.5 0.0 16 44-59 82-97 (170)
77 2ecv_A Tripartite motif-contai 73.5 0.52 1.8E-05 33.8 -0.7 33 112-152 19-51 (85)
78 2ecw_A Tripartite motif-contai 72.9 0.53 1.8E-05 33.7 -0.8 32 113-152 20-51 (85)
79 2c2l_A CHIP, carboxy terminus 72.8 2.2 7.6E-05 37.5 3.2 14 66-79 222-235 (281)
80 1z60_A TFIIH basal transcripti 72.8 0.94 3.2E-05 31.3 0.6 35 46-86 17-52 (59)
81 2ep4_A Ring finger protein 24; 72.4 0.45 1.5E-05 33.5 -1.2 37 112-153 15-51 (74)
82 3knv_A TNF receptor-associated 71.7 0.78 2.7E-05 37.1 -0.1 39 113-161 32-70 (141)
83 2y1n_A E3 ubiquitin-protein li 70.9 2 6.9E-05 40.8 2.6 51 42-125 330-380 (389)
84 1weo_A Cellulose synthase, cat 70.2 2.9 0.0001 31.2 2.8 54 51-129 21-75 (93)
85 3hct_A TNF receptor-associated 69.9 0.78 2.7E-05 35.6 -0.4 33 113-153 19-51 (118)
86 2js4_A UPF0434 protein BB2007; 69.3 3.4 0.00012 29.5 2.9 30 111-142 7-36 (70)
87 1v87_A Deltex protein 2; ring- 68.8 0.94 3.2E-05 34.7 -0.2 38 69-127 60-97 (114)
88 1z6u_A NP95-like ring finger p 68.7 0.87 3E-05 37.2 -0.4 39 113-161 79-117 (150)
89 2hf1_A Tetraacyldisaccharide-1 68.6 3.2 0.00011 29.4 2.6 29 112-142 8-36 (68)
90 2ecl_A Ring-box protein 2; RNF 68.6 1.2 4E-05 32.3 0.3 30 126-161 39-68 (81)
91 2yho_A E3 ubiquitin-protein li 67.9 1.5 5.2E-05 31.7 0.8 30 66-125 32-62 (79)
92 1rmd_A RAG1; V(D)J recombinati 67.8 0.91 3.1E-05 35.0 -0.5 33 113-153 24-56 (116)
93 2pk7_A Uncharacterized protein 66.1 3.7 0.00013 29.1 2.6 30 111-142 7-36 (69)
94 2kpi_A Uncharacterized protein 64.2 4.8 0.00017 27.3 2.7 29 112-142 10-38 (56)
95 4a0k_B E3 ubiquitin-protein li 63.6 1.5 5E-05 34.5 0.0 32 125-162 74-105 (117)
96 1v87_A Deltex protein 2; ring- 63.4 1.1 3.8E-05 34.3 -0.8 37 113-151 26-74 (114)
97 2ecg_A Baculoviral IAP repeat- 63.2 1.7 5.9E-05 30.7 0.3 13 113-125 57-69 (75)
98 2jrp_A Putative cytoplasmic pr 63.2 2.9 9.8E-05 30.8 1.5 29 114-152 33-63 (81)
99 2jny_A Uncharacterized BCR; st 60.7 5.5 0.00019 28.1 2.6 30 111-142 9-38 (67)
100 3knv_A TNF receptor-associated 59.4 2.9 0.0001 33.6 1.1 40 45-92 32-73 (141)
101 3h0g_I DNA-directed RNA polyme 59.2 5.7 0.0002 30.8 2.7 30 43-74 3-36 (113)
102 3h0g_I DNA-directed RNA polyme 59.0 6.4 0.00022 30.5 3.0 29 112-142 4-36 (113)
103 1qxf_A GR2, 30S ribosomal prot 58.1 8.1 0.00028 27.1 3.0 31 45-77 8-39 (66)
104 3t6p_A Baculoviral IAP repeat- 57.4 4.5 0.00015 37.7 2.1 29 66-124 309-338 (345)
105 3qt1_I DNA-directed RNA polyme 54.6 5.9 0.0002 31.8 2.2 31 110-142 22-56 (133)
106 2ea5_A Cell growth regulator w 54.2 2.8 9.7E-05 29.3 0.1 12 113-124 47-58 (68)
107 2vje_B MDM4 protein; proto-onc 53.4 3.3 0.00011 28.3 0.4 12 113-124 45-56 (63)
108 3j20_W 30S ribosomal protein S 52.6 11 0.00038 26.2 3.0 30 45-76 16-46 (63)
109 1twf_I B12.6, DNA-directed RNA 51.2 5.9 0.0002 31.2 1.6 30 43-74 3-36 (122)
110 4esj_A Type-2 restriction enzy 51.1 8.8 0.0003 33.9 2.8 23 103-126 26-49 (257)
111 1k81_A EIF-2-beta, probable tr 50.2 7.5 0.00026 23.8 1.6 26 114-141 2-30 (36)
112 1twf_I B12.6, DNA-directed RNA 50.1 7.9 0.00027 30.4 2.2 29 112-142 4-36 (122)
113 3m7n_A Putative uncharacterize 50.0 8.4 0.00029 32.2 2.5 24 113-140 141-164 (179)
114 2xzm_6 RPS27E; ribosome, trans 49.9 12 0.00041 27.3 2.9 34 45-80 33-67 (81)
115 3dpl_R Ring-box protein 1; ubi 49.3 2.7 9.2E-05 32.3 -0.7 30 126-161 64-93 (106)
116 1wfl_A Zinc finger protein 216 48.9 7.3 0.00025 28.0 1.6 30 112-148 25-54 (74)
117 2vje_A E3 ubiquitin-protein li 48.1 1.2 3.9E-05 30.8 -2.7 12 113-124 46-57 (64)
118 1twf_L ABC10-alpha, DNA-direct 47.7 7.9 0.00027 27.5 1.6 25 113-140 29-53 (70)
119 1dl6_A Transcription factor II 46.1 12 0.00042 25.3 2.4 26 112-139 11-37 (58)
120 3u5c_f 40S ribosomal protein S 45.7 9.5 0.00033 31.1 2.1 33 44-77 118-151 (152)
121 2y1n_A E3 ubiquitin-protein li 45.4 4.2 0.00014 38.6 -0.2 33 112-152 332-364 (389)
122 1wfh_A Zinc finger (AN1-like) 45.3 9.1 0.00031 26.7 1.6 32 111-149 14-45 (64)
123 1wii_A Hypothetical UPF0222 pr 45.1 9.9 0.00034 28.1 1.9 30 111-142 22-57 (85)
124 2lli_A Protein AIR2; RNA surve 44.5 15 0.00052 28.5 3.0 21 70-90 20-41 (124)
125 2akl_A PHNA-like protein PA012 44.4 12 0.0004 29.9 2.3 30 110-142 25-54 (138)
126 3vk6_A E3 ubiquitin-protein li 44.1 5.4 0.00019 30.5 0.3 37 114-152 3-49 (101)
127 2yw8_A RUN and FYVE domain-con 42.9 16 0.00053 26.4 2.7 42 105-150 11-53 (82)
128 2f42_A STIP1 homology and U-bo 42.5 30 0.001 29.0 4.7 14 66-79 120-133 (179)
129 2c2l_A CHIP, carboxy terminus 42.3 4.9 0.00017 35.1 -0.2 33 113-153 209-241 (281)
130 3u5c_b RP61, YS20, 40S ribosom 42.0 15 0.00051 26.9 2.4 35 44-80 34-69 (82)
131 1joc_A EEA1, early endosomal a 41.0 16 0.00053 28.8 2.6 42 105-150 61-103 (125)
132 1x4u_A Zinc finger, FYVE domai 40.9 16 0.00056 26.4 2.6 41 105-149 6-47 (84)
133 1deq_A Fibrinogen (alpha chain 40.6 2.3E+02 0.008 26.5 11.1 31 180-212 70-100 (390)
134 1wg2_A Zinc finger (AN1-like) 40.1 11 0.00038 26.3 1.4 32 111-149 14-45 (64)
135 1x4v_A Hypothetical protein LO 39.7 10 0.00034 26.4 1.1 31 44-80 12-43 (63)
136 3u5c_f 40S ribosomal protein S 38.6 15 0.0005 30.0 2.2 32 111-144 117-150 (152)
137 2yww_A Aspartate carbamoyltran 38.4 14 0.00048 30.2 1.9 32 43-74 104-143 (149)
138 2bl6_A Nucleocapsid protein P1 38.1 19 0.00064 21.7 2.1 17 74-90 2-18 (37)
139 3t7l_A Zinc finger FYVE domain 36.8 21 0.00071 26.3 2.6 44 104-151 11-55 (90)
140 2a51_A Nucleocapsid protein; s 36.5 25 0.00086 21.4 2.5 17 74-90 2-18 (39)
141 1wfe_A Riken cDNA 2310008M20 p 36.3 23 0.00078 26.1 2.7 40 43-91 24-65 (86)
142 2xzf_A Formamidopyrimidine-DNA 36.0 14 0.00049 32.9 1.8 24 112-135 242-267 (271)
143 1ee8_A MUTM (FPG) protein; bet 35.7 17 0.00058 32.4 2.3 24 112-135 235-260 (266)
144 2yu4_A E3 SUMO-protein ligase 35.1 7.4 0.00025 28.7 -0.2 32 114-152 9-40 (94)
145 3u6p_A Formamidopyrimidine-DNA 34.6 15 0.00053 32.8 1.8 24 112-135 245-270 (273)
146 1k3x_A Endonuclease VIII; hydr 34.3 16 0.00054 32.5 1.8 24 112-135 234-259 (262)
147 1k82_A Formamidopyrimidine-DNA 34.1 16 0.00054 32.6 1.8 24 112-135 240-265 (268)
148 1wff_A Riken cDNA 2810002D23 p 34.1 17 0.00058 26.8 1.6 31 111-147 24-54 (85)
149 1wfp_A Zinc finger (AN1-like) 34.0 15 0.00053 26.3 1.4 31 111-148 24-54 (74)
150 2xzm_9 RPS31E; ribosome, trans 33.9 19 0.00066 30.5 2.2 29 111-142 112-141 (189)
151 2be7_D Aspartate carbamoyltran 32.6 17 0.00057 29.8 1.5 32 43-74 104-144 (153)
152 1vfy_A Phosphatidylinositol-3- 32.1 34 0.0012 24.0 3.0 27 51-80 16-43 (73)
153 1dvp_A HRS, hepatocyte growth 31.8 23 0.00077 30.4 2.4 39 106-150 157-195 (220)
154 3iz6_X 40S ribosomal protein S 31.2 50 0.0017 24.3 3.7 42 45-88 37-79 (86)
155 2ec7_A GAG polyprotein (PR55GA 30.7 35 0.0012 21.9 2.6 18 73-90 7-24 (49)
156 3htk_C E3 SUMO-protein ligase 30.7 14 0.00048 33.1 0.8 43 112-162 181-223 (267)
157 3zyq_A Hepatocyte growth facto 30.4 27 0.00092 30.2 2.6 19 63-81 178-197 (226)
158 3nyb_B Protein AIR2; polya RNA 30.3 25 0.00086 25.6 2.0 19 72-90 5-23 (83)
159 1loi_A Cyclic 3',5'-AMP specif 30.1 11 0.00037 20.8 0.0 11 141-151 6-16 (26)
160 1wys_A Riken cDNA 2310008M20 p 29.8 23 0.00079 25.4 1.7 45 45-97 15-60 (75)
161 3a43_A HYPD, hydrogenase nicke 29.2 41 0.0014 26.8 3.3 37 22-60 40-84 (139)
162 1z2q_A LM5-1; membrane protein 28.5 21 0.00071 25.9 1.3 43 104-150 12-55 (84)
163 1vk6_A NADH pyrophosphatase; 1 27.9 45 0.0015 29.5 3.7 30 110-141 105-134 (269)
164 1nee_A EIF-2-beta, probable tr 27.4 25 0.00087 28.2 1.7 26 114-141 104-132 (138)
165 3h0g_L DNA-directed RNA polyme 27.2 26 0.00088 24.3 1.5 26 113-141 22-47 (63)
166 1deq_A Fibrinogen (alpha chain 26.8 3E+02 0.01 25.7 9.1 42 226-272 150-191 (390)
167 3ghg_A Fibrinogen alpha chain; 26.8 4.2E+02 0.015 25.9 10.4 87 172-273 95-189 (562)
168 1wfk_A Zinc finger, FYVE domai 26.5 43 0.0015 24.5 2.8 35 112-150 9-43 (88)
169 1pg5_B Aspartate carbamoyltran 26.2 33 0.0011 28.5 2.3 32 43-74 113-153 (168)
170 2a20_A Regulating synaptic mem 25.6 17 0.00057 25.0 0.3 36 113-152 10-45 (62)
171 3zyq_A Hepatocyte growth facto 23.8 34 0.0012 29.5 2.0 40 105-150 159-198 (226)
172 1dsq_A Nucleic acid binding pr 23.7 36 0.0012 18.9 1.4 19 73-91 3-21 (26)
173 2e72_A POGO transposable eleme 23.7 22 0.00074 23.3 0.5 35 107-151 7-41 (49)
174 1lv3_A Hypothetical protein YA 23.4 22 0.00074 25.1 0.5 35 111-154 8-47 (68)
175 2l6l_A DNAJ homolog subfamily 23.3 87 0.003 24.9 4.4 24 16-39 65-88 (155)
176 1a1t_A Nucleocapsid protein; s 23.2 39 0.0013 22.1 1.8 18 73-90 13-30 (55)
177 3na7_A HP0958; flagellar bioge 22.3 91 0.0031 27.1 4.6 52 22-75 174-233 (256)
178 1dvp_A HRS, hepatocyte growth 22.3 57 0.0019 27.8 3.2 19 63-81 175-194 (220)
179 3v2d_5 50S ribosomal protein L 21.8 39 0.0013 23.1 1.6 24 110-140 28-51 (60)
180 3pwf_A Rubrerythrin; non heme 21.4 56 0.0019 26.9 2.8 20 47-72 141-161 (170)
181 2d74_B Translation initiation 21.4 35 0.0012 27.7 1.5 27 113-141 105-134 (148)
182 1nui_A DNA primase/helicase; z 20.8 53 0.0018 28.4 2.7 23 113-140 15-41 (255)
183 2kr4_A Ubiquitin conjugation f 20.7 20 0.00069 25.8 -0.1 32 113-152 15-46 (85)
184 2kdx_A HYPA, hydrogenase/ureas 20.7 1.1E+02 0.0037 23.3 4.2 26 42-72 71-98 (119)
185 2lli_A Protein AIR2; RNA surve 20.5 68 0.0023 24.6 3.0 18 73-90 43-60 (124)
186 3t6p_A Baculoviral IAP repeat- 20.3 51 0.0017 30.4 2.6 31 112-150 295-326 (345)
187 3k1l_B Fancl; UBC, ring, RWD, 20.3 28 0.00095 32.6 0.7 40 112-151 308-347 (381)
188 2f9y_B Acetyl-coenzyme A carbo 20.2 23 0.0008 32.1 0.2 29 112-142 24-53 (304)
189 3cw2_K Translation initiation 20.2 30 0.001 27.8 0.9 27 113-141 104-133 (139)
190 1nc8_A Nucleocapsid protein; H 20.1 30 0.001 19.7 0.6 18 73-90 7-24 (29)
No 1
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.90 E-value=5.4e-25 Score=157.19 Aligned_cols=59 Identities=90% Similarity=1.903 Sum_probs=56.2
Q ss_pred HhhhcCCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCCCCCCCCCCCCch
Q psy15975 107 WIAANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCNRYDE 165 (312)
Q Consensus 107 ~i~~~~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h~~~~~~C~~~~~ 165 (312)
||.+++|+||+|+++|||++|||||+|..++|+++|||+|+++|+.|+..+|+||+|++
T Consensus 1 wi~~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~~~~y~C~~y~~ 59 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGSAWYNCNRYNE 59 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGGTSSSSSCSCCC
T ss_pred CccccceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCCCccccCCCccc
Confidence 78899999999999999999999999997779999999999999999999999999975
No 2
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.60 E-value=2.2e-17 Score=126.39 Aligned_cols=79 Identities=19% Similarity=0.559 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCceecCCcCCCCceecccCCCCceEcC-CCcccccccCCcc---CCCCCchhhHHHhhh
Q psy15975 22 DPKVKLKYQHLITNSFVECNRLLRWCPSPDCNNAIKVQHVEARPVVCK-CGHRFCFACGENW---HDPVRCSLLRRWIKK 97 (312)
Q Consensus 22 ~~e~~~~y~~~~~~~~v~~~~~~~~CP~~~C~~~i~~~~~~~~~v~C~-C~~~fC~~C~~~~---H~p~~C~~~~~w~~~ 97 (312)
+++++++|++++.+++|..+++++||| +|+.++..+. +...|+|+ |+..||+.|+.+| |.|++|+++++|.++
T Consensus 3 s~~~~e~y~~~l~e~~v~~~~~~~wCP--~C~~~~~~~~-~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w~~~ 79 (86)
T 2ct7_A 3 SGSSGALFHKKLTEGVLMRDPKFLWCA--QCSFGFIYER-EQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRM 79 (86)
T ss_dssp CCCCCCSSSSCCCCSCCCSCCCEECCS--SSCCCEECCC-SCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEeECc--CCCchheecC-CCCceEeCCCCCccccccCCchhhcCCCCChHHHHHHHHh
Confidence 566788999999999999999999999 9999987764 46679999 9999999999999 999999999999998
Q ss_pred cccchh
Q psy15975 98 CDDDSE 103 (312)
Q Consensus 98 ~~~~~~ 103 (312)
+..+++
T Consensus 80 n~~~~~ 85 (86)
T 2ct7_A 80 NSGPSS 85 (86)
T ss_dssp HTCSSC
T ss_pred Cccccc
Confidence 766543
No 3
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=99.42 E-value=1.7e-15 Score=114.23 Aligned_cols=67 Identities=28% Similarity=0.608 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCceecCCcCCCCceecccCCCCceEc------CCCcccccccCCccCCCCCchhh
Q psy15975 22 DPKVKLKYQHLITNSFVECNRLLRWCPSPDCNNAIKVQHVEARPVVC------KCGHRFCFACGENWHDPVRCSLL 91 (312)
Q Consensus 22 ~~e~~~~y~~~~~~~~v~~~~~~~~CP~~~C~~~i~~~~~~~~~v~C------~C~~~fC~~C~~~~H~p~~C~~~ 91 (312)
++++++||++++++++|+.++ ++|||+|+|+.+|..+. +...|+| .|++.||+.|+.+||. .+|.++
T Consensus 4 ~~~~~~rY~~~~~e~~v~~~~-~~~CP~p~C~~~v~~~~-~~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~~ 76 (80)
T 2jmo_A 4 GEEQYNRYQQYGAEECVLQMG-GVLCPRPGCGAGLLPEP-DQRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSAV 76 (80)
T ss_dssp CCCCCCSCCCSSSCCSSCCCS-SCCCCSSSCCCCCCCCS-CTTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSSC
T ss_pred CHHHHHHHHHHHHHHHhhhCC-cEECCCCCCCcccEECC-CCCcCCCCCCCCCCCCCeeccccCccccC-Cccccc
Confidence 567889999999999999886 99999999999998765 5677999 5999999999999999 999874
No 4
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=97.90 E-value=2.9e-06 Score=64.28 Aligned_cols=50 Identities=24% Similarity=0.616 Sum_probs=41.0
Q ss_pred cCCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCC-CCCCCCCCCCCCCc
Q psy15975 111 NTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPW-EPHGSSWYSCNRYD 164 (312)
Q Consensus 111 ~~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w-~~h~~~~~~C~~~~ 164 (312)
+.+-||.|+..+...++-..++|.. |++.||+.|+.+| ..|.+ ..|..|+
T Consensus 24 ~~~wCP~C~~~~~~~~~~~~v~C~~--C~~~FC~~C~~~w~~~H~~--~sC~~~~ 74 (86)
T 2ct7_A 24 KFLWCAQCSFGFIYEREQLEATCPQ--CHQTFCVRCKRQWEEQHRG--RSCEDFQ 74 (86)
T ss_dssp CEECCSSSCCCEECCCSCSCEECTT--TCCEECSSSCSBCCTTTTT--SCHHHHH
T ss_pred CEeECcCCCchheecCCCCceEeCC--CCCccccccCCchhhcCCC--CChHHHH
Confidence 4456999999998888888899987 9999999999999 44553 3686554
No 5
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=97.73 E-value=1.4e-05 Score=59.72 Aligned_cols=40 Identities=20% Similarity=0.605 Sum_probs=36.4
Q ss_pred cCCCCCC--CCceeEecCCCCceeec-----CCCCCcceecccCCCCCC
Q psy15975 111 NTKECPK--CLVTIEKDGGCNHMVCK-----NQSCKAEFCWVCLGPWEP 152 (312)
Q Consensus 111 ~~k~CP~--C~~~IeK~~GCnhMtC~-----~~~C~~~FCw~C~~~w~~ 152 (312)
+.+-||. |+..|...++...++|. . |++.||+.|+.+|..
T Consensus 24 ~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~--C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 24 GGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLG--CGFAFCRECKEAYHE 70 (80)
T ss_dssp SSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTC--CSCCEETTTTEECCS
T ss_pred CcEECCCCCCCcccEECCCCCcCCCCCCCCCC--CCCeeccccCccccC
Confidence 4688998 99999999999999996 5 999999999999966
No 6
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.73 E-value=6.1e-05 Score=60.22 Aligned_cols=102 Identities=24% Similarity=0.428 Sum_probs=63.0
Q ss_pred eecCCcCCCCceeccc-CCCCceEcCCCcccccccCCcc-CCCCCchhhHHHhhhcccchhhhHHhhhcCCCCCCCCcee
Q psy15975 45 RWCPSPDCNNAIKVQH-VEARPVVCKCGHRFCFACGENW-HDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTI 122 (312)
Q Consensus 45 ~~CP~~~C~~~i~~~~-~~~~~v~C~C~~~fC~~C~~~~-H~p~~C~~~~~w~~~~~~~~~~~~~i~~~~k~CP~C~~~I 122 (312)
.-|| =|-..+..+. .+...+.-+|||.||..|-..| ....+|+.-+.... .......++..+...||-|...+
T Consensus 8 ~~C~--IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~---~~~l~~l~i~~~~~~C~iC~~~~ 82 (133)
T 4ap4_A 8 VSCP--ICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN---HKRYHPIYIGSGTVSCPICMDGY 82 (133)
T ss_dssp CBCT--TTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCT---TTCEEECBCSSSSCBCTTTCCBH
T ss_pred CCCc--ccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCc---cccccccccCCCCCCCCCCCCcc
Confidence 3577 4766543221 1222355669999999999877 44456776443221 11122234445677899998887
Q ss_pred EecC--CCCceeecCCCCCcceecccCCCCCCCC
Q psy15975 123 EKDG--GCNHMVCKNQSCKAEFCWVCLGPWEPHG 154 (312)
Q Consensus 123 eK~~--GCnhMtC~~~~C~~~FCw~C~~~w~~h~ 154 (312)
.... |-..+... |||.||+.|...|-...
T Consensus 83 ~~~~~~~~~~~~~~---CgH~fc~~Ci~~~~~~~ 113 (133)
T 4ap4_A 83 SEIVQNGRLIVSTE---CGHVFCSQCLRDSLKNA 113 (133)
T ss_dssp HHHHHTTCCEEEET---TSBEEEHHHHHHHHHHC
T ss_pred ccccccCcceEeCC---CCChhhHHHHHHHHHcC
Confidence 7642 22234554 99999999999996543
No 7
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.48 E-value=0.0055 Score=42.91 Aligned_cols=37 Identities=30% Similarity=0.880 Sum_probs=31.6
Q ss_pred CceecCCcCCCCceecccCCCCceEcC---CCcccccccCCcc
Q psy15975 43 LLRWCPSPDCNNAIKVQHVEARPVVCK---CGHRFCFACGENW 82 (312)
Q Consensus 43 ~~~~CP~~~C~~~i~~~~~~~~~v~C~---C~~~fC~~C~~~~ 82 (312)
+.+.|| .|+..|...+ +-..++|. |++.||+.|+.+|
T Consensus 5 ~~k~CP--~C~~~Iek~~-GCnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 5 NTKECP--KCHVTIEKDG-GCNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCCCT--TTCCCCSSCC-SCCSSSCCSSGGGSCCSSSSCSCS
T ss_pred cceECc--CCCCeeEeCC-CCCcEEECCCCcCCEEeeCcCCCc
Confidence 457888 6999998765 57789998 9999999999987
No 8
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.51 E-value=0.07 Score=37.66 Aligned_cols=42 Identities=21% Similarity=0.684 Sum_probs=29.9
Q ss_pred CCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCCCCCCCCCC
Q psy15975 112 TKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCN 161 (312)
Q Consensus 112 ~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h~~~~~~C~ 161 (312)
...||-|...+. +.++-. |||.||+.|...|-........|+
T Consensus 20 ~~~C~IC~~~~~-----~~~~~~---CgH~fC~~Ci~~~~~~~~~~~~CP 61 (73)
T 2ysl_A 20 EVICPICLDILQ-----KPVTID---CGHNFCLKCITQIGETSCGFFKCP 61 (73)
T ss_dssp CCBCTTTCSBCS-----SEEECT---TCCEEEHHHHHHHCSSSCSCCCCS
T ss_pred CCEeccCCcccC-----CeEEcC---CCChhhHHHHHHHHHcCCCCCCCC
Confidence 358999988775 344444 999999999999976322234565
No 9
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.17 E-value=0.037 Score=38.12 Aligned_cols=42 Identities=21% Similarity=0.684 Sum_probs=29.5
Q ss_pred CCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCCCCCCCCCC
Q psy15975 112 TKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCN 161 (312)
Q Consensus 112 ~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h~~~~~~C~ 161 (312)
.-.||-|...+. +.++-. |||.||+.|...|-...+....|+
T Consensus 20 ~~~C~IC~~~~~-----~p~~~~---CgH~fC~~Ci~~~~~~~~~~~~CP 61 (63)
T 2ysj_A 20 EVICPICLDILQ-----KPVTID---CGHNFCLKCITQIGETSCGFFKCP 61 (63)
T ss_dssp CCBCTTTCSBCS-----SCEECT---TSSEECHHHHHHHHHHCSSCCCCS
T ss_pred CCCCCcCCchhC-----CeEEeC---CCCcchHHHHHHHHHcCCCCCcCc
Confidence 358999988775 344444 999999999999975322224565
No 10
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=89.79 E-value=0.11 Score=39.90 Aligned_cols=50 Identities=28% Similarity=0.649 Sum_probs=33.0
Q ss_pred ecCCcCCCCceecccCCCCceEcCCCcccccccCCccCCCCCchhhHHHhhhcccchhhhHHhhhcCCCCCCCCceeEec
Q psy15975 46 WCPSPDCNNAIKVQHVEARPVVCKCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEKD 125 (312)
Q Consensus 46 ~CP~~~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~H~p~~C~~~~~w~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK~ 125 (312)
+|| .|+-.|..-+ ..=||.+.||..|-. .|.....+.||.|+.+|.+.
T Consensus 3 fC~--~C~~Pi~iyg-----RmIPCkHvFCydCa~-------------------------~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCD--KCGLPIKVYG-----RMIPCKHVFCYDCAI-------------------------LHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCT--TTCSBCSEEE-----EEETTCCEEEHHHHH-------------------------HHHHTTCCBCTTTCCBCSEE
T ss_pred ecC--ccCCCeEEEe-----eeccccccHHHHHHH-------------------------HHHhccCCCCcCcCCeeeee
Confidence 566 4777764432 112489999997732 23334568999999999886
Q ss_pred CC
Q psy15975 126 GG 127 (312)
Q Consensus 126 ~G 127 (312)
+-
T Consensus 51 e~ 52 (101)
T 3vk6_A 51 EQ 52 (101)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 11
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=89.57 E-value=0.12 Score=35.70 Aligned_cols=35 Identities=29% Similarity=0.760 Sum_probs=24.1
Q ss_pred eEcCCCcccccccCCccCCCCCchhhHHHhhhcccchhhhHHhhhcCCCCCCCCceeEec
Q psy15975 66 VVCKCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEKD 125 (312)
Q Consensus 66 v~C~C~~~fC~~C~~~~H~p~~C~~~~~w~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK~ 125 (312)
+.=+|||.||..|-. .| +..+...||.|+.++.++
T Consensus 22 ~~~~CgH~fC~~Ci~------------~~-------------~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 22 MVNVCGHTLCESCVD------------LL-------------FVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp EECTTCCCEEHHHHH------------HH-------------HHTTSSSCTTTCCCCSSC
T ss_pred ecCCCCCHhHHHHHH------------HH-------------HHcCCCcCCCCCCccccc
Confidence 444699999998853 22 222346899999998654
No 12
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=89.25 E-value=0.062 Score=40.90 Aligned_cols=40 Identities=20% Similarity=0.712 Sum_probs=31.0
Q ss_pred CCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCCCCCCCCCC
Q psy15975 113 KECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCN 161 (312)
Q Consensus 113 k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h~~~~~~C~ 161 (312)
-.||-|...+. +.++|.. |||.||+.|...|-.... ..|+
T Consensus 23 ~~C~IC~~~~~-----~p~~~~~--CgH~FC~~Ci~~~~~~~~--~~CP 62 (100)
T 3lrq_A 23 FRCFICMEKLR-----DARLCPH--CSKLCCFSCIRRWLTEQR--AQCP 62 (100)
T ss_dssp TBCTTTCSBCS-----SEEECTT--TCCEEEHHHHHHHHHHTC--SBCT
T ss_pred CCCccCCcccc-----CccccCC--CCChhhHHHHHHHHHHCc--CCCC
Confidence 58999998885 4677777 999999999999965432 2465
No 13
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=89.18 E-value=0.084 Score=40.14 Aligned_cols=27 Identities=26% Similarity=0.800 Sum_probs=19.3
Q ss_pred ecCCcCCCCceecccCCCCceEcC-CCcccccccCC
Q psy15975 46 WCPSPDCNNAIKVQHVEARPVVCK-CGHRFCFACGE 80 (312)
Q Consensus 46 ~CP~~~C~~~i~~~~~~~~~v~C~-C~~~fC~~C~~ 80 (312)
-|| =|...+. ..+.|. |||.||..|-.
T Consensus 24 ~C~--IC~~~~~------~p~~~~~CgH~FC~~Ci~ 51 (100)
T 3lrq_A 24 RCF--ICMEKLR------DARLCPHCSKLCCFSCIR 51 (100)
T ss_dssp BCT--TTCSBCS------SEEECTTTCCEEEHHHHH
T ss_pred CCc--cCCcccc------CccccCCCCChhhHHHHH
Confidence 587 4776653 246766 99999998854
No 14
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=88.41 E-value=0.27 Score=36.25 Aligned_cols=46 Identities=28% Similarity=0.731 Sum_probs=32.9
Q ss_pred CCCCCCCceeEecCCCCceeecCCCCC-----cceecccCCCCCC---CCCCCCCCCC
Q psy15975 113 KECPKCLVTIEKDGGCNHMVCKNQSCK-----AEFCWVCLGPWEP---HGSSWYSCNR 162 (312)
Q Consensus 113 k~CP~C~~~IeK~~GCnhMtC~~~~C~-----~~FCw~C~~~w~~---h~~~~~~C~~ 162 (312)
..||.|+.+|+.++| +-.|.. |+ .-||-.|+++-.. .|.--|.||.
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~~--C~~~~~~~afCPeCgq~Le~lkACGA~~yFC~~ 56 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCET--CAKDFSLQALCPDCRQPLQVLKACGAVDYFCQN 56 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECTT--TCCEEEEEEECSSSCSCCCEEEETTEEEECCTT
T ss_pred CCCCCCCCccccCCC--ceECcc--ccccCCCcccCcchhhHHHHHHhcCCcCeeecc
Confidence 579999999998888 666887 87 3478888888743 3433355663
No 15
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=88.06 E-value=0.1 Score=42.07 Aligned_cols=27 Identities=30% Similarity=0.704 Sum_probs=18.9
Q ss_pred ecCCcCCCCceecccCCCCceEcCCCcccccccCC
Q psy15975 46 WCPSPDCNNAIKVQHVEARPVVCKCGHRFCFACGE 80 (312)
Q Consensus 46 ~CP~~~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~ 80 (312)
.||- |...+. ..|+-+|||.||..|-.
T Consensus 55 ~C~i--C~~~~~------~~~~~~CgH~fc~~Ci~ 81 (138)
T 4ayc_A 55 QCII--CSEYFI------EAVTLNCAHSFCSYCIN 81 (138)
T ss_dssp BCTT--TCSBCS------SEEEETTSCEEEHHHHH
T ss_pred CCcc--cCcccC------CceECCCCCCccHHHHH
Confidence 5884 776542 23666899999998853
No 16
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=87.26 E-value=0.29 Score=40.46 Aligned_cols=45 Identities=33% Similarity=0.800 Sum_probs=29.4
Q ss_pred ecCCcCCCCceecccCCCCceEc-CCCcccccccCCccCCCCCchhhHHHhhhcccchhhhHHhhhcCCCCCCCCceeE
Q psy15975 46 WCPSPDCNNAIKVQHVEARPVVC-KCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIE 123 (312)
Q Consensus 46 ~CP~~~C~~~i~~~~~~~~~v~C-~C~~~fC~~C~~~~H~p~~C~~~~~w~~~~~~~~~~~~~i~~~~k~CP~C~~~Ie 123 (312)
.||- |...+. ..+.. +|||.||..|-. . |+......||.|+.++.
T Consensus 56 ~C~I--C~~~~~------~p~~~~~CgH~fC~~Ci~------------~-------------~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 56 MCPI--CLDMLK------NTMTTKECLHRFCADCII------------T-------------ALRSGNKECPTCRKKLV 101 (165)
T ss_dssp BCTT--TSSBCS------SEEEETTTCCEEEHHHHH------------H-------------HHHTTCCBCTTTCCBCC
T ss_pred CCcc--cChHhh------CcCEeCCCCChhHHHHHH------------H-------------HHHhCcCCCCCCCCcCC
Confidence 6773 765542 13566 699999998843 2 33333467999988873
No 17
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=87.18 E-value=0.22 Score=36.32 Aligned_cols=51 Identities=22% Similarity=0.574 Sum_probs=32.4
Q ss_pred eecCCcCCCCceecccCCCCceEcCCCcccccccCCccCCCCCchhhHHHhhhcccchhhhHHhhhcCCCCCCCCceeEe
Q psy15975 45 RWCPSPDCNNAIKVQHVEARPVVCKCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEK 124 (312)
Q Consensus 45 ~~CP~~~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~H~p~~C~~~~~w~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK 124 (312)
.-|| =|-..+... +.....|+|||.||..|...+ |. .....||.|+.++..
T Consensus 12 ~~Cp--ICle~~~~~--d~~~~p~~CGH~fC~~Cl~~~-----------~~--------------~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 12 VECP--LCMEPLEID--DINFFPCTCGYQICRFCWHRI-----------RT--------------DENGLCPACRKPYPE 62 (78)
T ss_dssp CBCT--TTCCBCCTT--TTTCCSSTTSCCCCHHHHHHH-----------TT--------------SSCSBCTTTCCBCSS
T ss_pred CcCC--ccCccCccc--cccccccCCCCCcCHHHHHHH-----------Hh--------------cCCCCCCCCCCccCC
Confidence 4687 477755332 233455889999999885321 10 123689999998854
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.10 E-value=0.073 Score=38.94 Aligned_cols=46 Identities=20% Similarity=0.453 Sum_probs=30.3
Q ss_pred CCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCCCCCCCCCC
Q psy15975 112 TKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCN 161 (312)
Q Consensus 112 ~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h~~~~~~C~ 161 (312)
.-.||-|...+...... .+.-. |||.||..|...|-........|+
T Consensus 15 ~~~C~IC~~~~~~~~~~-~~~~~---CgH~fC~~Ci~~~~~~~~~~~~CP 60 (88)
T 2ct2_A 15 VLECPICMESFTEEQLR-PKLLH---CGHTICRQCLEKLLASSINGVRCP 60 (88)
T ss_dssp CCBCTTTCCBCCTTSSC-EEECS---SSCEEEHHHHHHHHHHCSSCBCCT
T ss_pred CCCCccCCccccccCCC-eEECC---CCChhhHHHHHHHHHcCCCCcCCC
Confidence 35799998887554221 23333 999999999999965432224565
No 19
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=86.95 E-value=0.18 Score=39.66 Aligned_cols=46 Identities=24% Similarity=0.615 Sum_probs=30.2
Q ss_pred ecCCcCCCCceecccCCCCceEcCCCcccccccCCccCCCCCchhhHHHhhhcccchhhhHHhhhcCCCCCCCCceeEe
Q psy15975 46 WCPSPDCNNAIKVQHVEARPVVCKCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEK 124 (312)
Q Consensus 46 ~CP~~~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~H~p~~C~~~~~w~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK 124 (312)
-|| =|...+.. .++-+|||.||..|-.. |+..+...||.|+.++..
T Consensus 54 ~C~--IC~~~~~~------p~~~~CgH~fC~~Ci~~-------------------------~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 54 QCI--CCQELVFR------PITTVCQHNVCKDCLDR-------------------------SFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp BCT--TTSSBCSS------EEECTTSCEEEHHHHHH-------------------------HHHTTCCBCTTTCCBCCT
T ss_pred CCC--cCChHHcC------cEEeeCCCcccHHHHHH-------------------------HHhHCcCCCCCCCccCCC
Confidence 588 47766531 24458999999988543 222334589999888844
No 20
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=86.74 E-value=0.22 Score=35.45 Aligned_cols=33 Identities=21% Similarity=0.624 Sum_probs=25.5
Q ss_pred CCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCC
Q psy15975 113 KECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPH 153 (312)
Q Consensus 113 k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h 153 (312)
-.||-|...+.. .++-. |||.||..|...|-..
T Consensus 13 ~~C~IC~~~~~~-----p~~l~---CgH~fC~~Ci~~~~~~ 45 (79)
T 2egp_A 13 VTCPICLELLTE-----PLSLD---CGHSLCRACITVSNKE 45 (79)
T ss_dssp CEETTTTEECSS-----CCCCS---SSCCCCHHHHSCCCCC
T ss_pred CCCcCCCcccCC-----eeECC---CCCHHHHHHHHHHHHh
Confidence 479999887642 34434 9999999999999765
No 21
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=86.56 E-value=0.27 Score=35.06 Aligned_cols=46 Identities=28% Similarity=0.550 Sum_probs=28.9
Q ss_pred eecCCcCCCCceecccCCCCceEcCCCcccccccCCccCCCCCchhhHHHhhhcccchhhhHHhhhcCCCCCCCCceeE
Q psy15975 45 RWCPSPDCNNAIKVQHVEARPVVCKCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIE 123 (312)
Q Consensus 45 ~~CP~~~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~H~p~~C~~~~~w~~~~~~~~~~~~~i~~~~k~CP~C~~~Ie 123 (312)
..|| =|...+. ..|.-+||+.||..|-.. |+..+...||.|+.++.
T Consensus 9 ~~C~--IC~~~~~------~Pv~~~CgH~fc~~Ci~~-------------------------~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 9 FRCP--ISLELMK------DPVIVSTGQTYERSSIQK-------------------------WLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSCT--TTSCCCS------SEEEETTTEEEEHHHHHH-------------------------HHTTTCCBCTTTCCBCS
T ss_pred CCCC--Ccccccc------CCEEcCCCCeecHHHHHH-------------------------HHHHCcCCCCCCcCCCC
Confidence 3577 3766542 125557999999988432 33223467888888774
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.11 E-value=0.25 Score=34.15 Aligned_cols=50 Identities=28% Similarity=0.643 Sum_probs=31.3
Q ss_pred CceecCCcCCCCceecccCCCCceEcCCCcccccccCCccCCCCCchhhHHHhhhcccchhhhHHhhhcCCCCCCCCcee
Q psy15975 43 LLRWCPSPDCNNAIKVQHVEARPVVCKCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTI 122 (312)
Q Consensus 43 ~~~~CP~~~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~H~p~~C~~~~~w~~~~~~~~~~~~~i~~~~k~CP~C~~~I 122 (312)
....|| -|...+... +.-+|||.||..|-.. |+......||.|+.+|
T Consensus 14 ~~~~C~--IC~~~~~~p------~~~~CgH~fC~~Ci~~-------------------------~~~~~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 14 DKYKCE--KCHLVLCSP------KQTECGHRFCESCMAA-------------------------LLSSSSPKCTACQESI 60 (66)
T ss_dssp CCEECT--TTCCEESSC------CCCSSSCCCCHHHHHH-------------------------HHTTSSCCCTTTCCCC
T ss_pred cCCCCC--CCChHhcCe------eECCCCCHHHHHHHHH-------------------------HHHhCcCCCCCCCcCC
Confidence 345687 476665321 2236999999988432 2223346899999988
Q ss_pred Eec
Q psy15975 123 EKD 125 (312)
Q Consensus 123 eK~ 125 (312)
..+
T Consensus 61 ~~~ 63 (66)
T 2ecy_A 61 VKD 63 (66)
T ss_dssp CTT
T ss_pred Chh
Confidence 654
No 23
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=86.01 E-value=0.055 Score=42.56 Aligned_cols=34 Identities=35% Similarity=0.857 Sum_probs=24.2
Q ss_pred eEcCCCcccccccCCccCCCCCchhhHHHhhhcccchhhhHHhhhcCCCCCCCCceeEec
Q psy15975 66 VVCKCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEKD 125 (312)
Q Consensus 66 v~C~C~~~fC~~C~~~~H~p~~C~~~~~w~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK~ 125 (312)
+..+||+.||..|... | +. ..+.||.|+.+|.++
T Consensus 93 ~~~~CgH~fc~~Ci~~------------~-------------~~-~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 93 VSTECGHVFCSQCLRD------------S-------------LK-NANTCPTCRKKINHK 126 (133)
T ss_dssp EEETTSBEEEHHHHHH------------H-------------HH-HCSBCTTTCCBCCGG
T ss_pred EeCCCCChhhHHHHHH------------H-------------HH-cCCCCCCCCCcCChh
Confidence 5566888888887432 3 22 237999999999775
No 24
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.71 E-value=0.17 Score=35.61 Aligned_cols=50 Identities=30% Similarity=0.833 Sum_probs=31.3
Q ss_pred eecCCcCCCCceecccCCCCceEcCCCcccccccCCccCCCCCchhhHHHhhhcccchhhhHHhhhcCCCCCCCCceeEe
Q psy15975 45 RWCPSPDCNNAIKVQHVEARPVVCKCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEK 124 (312)
Q Consensus 45 ~~CP~~~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~H~p~~C~~~~~w~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK 124 (312)
..|| -|...+. ..+.-+|||.||..|...|-.. ......||.|+.+|..
T Consensus 21 ~~C~--IC~~~~~------~~~~~~CgH~fC~~Ci~~~~~~-----------------------~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 21 VICP--ICLDILQ------KPVTIDCGHNFCLKCITQIGET-----------------------SCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CBCT--TTCSBCS------SEEECTTCCEEEHHHHHHHCSS-----------------------SCSCCCCSSSCCCCCC
T ss_pred CEec--cCCcccC------CeEEcCCCChhhHHHHHHHHHc-----------------------CCCCCCCCCCCCcCCc
Confidence 4677 3665442 1244489999999886443210 0234689999999866
Q ss_pred c
Q psy15975 125 D 125 (312)
Q Consensus 125 ~ 125 (312)
+
T Consensus 70 ~ 70 (73)
T 2ysl_A 70 N 70 (73)
T ss_dssp C
T ss_pred c
Confidence 4
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=85.63 E-value=0.2 Score=40.33 Aligned_cols=38 Identities=21% Similarity=0.616 Sum_probs=28.4
Q ss_pred CCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCCCCCCCCCC
Q psy15975 113 KECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCN 161 (312)
Q Consensus 113 k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h~~~~~~C~ 161 (312)
-.||-|...+. +.++-. |||.||..|...|-.... .|+
T Consensus 54 ~~C~iC~~~~~-----~~~~~~---CgH~fc~~Ci~~~~~~~~---~CP 91 (138)
T 4ayc_A 54 LQCIICSEYFI-----EAVTLN---CAHSFCSYCINEWMKRKI---ECP 91 (138)
T ss_dssp SBCTTTCSBCS-----SEEEET---TSCEEEHHHHHHHTTTCS---BCT
T ss_pred CCCcccCcccC-----CceECC---CCCCccHHHHHHHHHcCC---cCC
Confidence 46999988773 345554 999999999999976542 465
No 26
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=85.61 E-value=0.27 Score=39.72 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=21.5
Q ss_pred CCceecCCcCCCCceecccC---CCCceEcC-CCccc
Q psy15975 42 RLLRWCPSPDCNNAIKVQHV---EARPVVCK-CGHRF 74 (312)
Q Consensus 42 ~~~~~CP~~~C~~~i~~~~~---~~~~v~C~-C~~~f 74 (312)
..+++|| .|++.+.+... ....+.|+ |++..
T Consensus 22 ~~~~FCP--eCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 22 TTFRFCR--DCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CCCCBCT--TTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred cCCeeCC--CCCCEeeECccCCCceeEEECCCCCCcE
Confidence 3678999 79999877643 23357777 76644
No 27
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=85.45 E-value=0.66 Score=30.58 Aligned_cols=30 Identities=27% Similarity=0.583 Sum_probs=24.0
Q ss_pred cCCCCCCCCc-eeEecCCCCceeecCCCCCcce
Q psy15975 111 NTKECPKCLV-TIEKDGGCNHMVCKNQSCKAEF 142 (312)
Q Consensus 111 ~~k~CP~C~~-~IeK~~GCnhMtC~~~~C~~~F 142 (312)
+...||.|+. .+.-+..=..+.|.. ||.-|
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~--CG~v~ 34 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAK--CGYVI 34 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESS--SCCBC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcc--cCCcc
Confidence 4568999998 888887777899998 88543
No 28
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=85.44 E-value=0.28 Score=32.43 Aligned_cols=43 Identities=23% Similarity=0.512 Sum_probs=30.6
Q ss_pred CCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCCCCCCCCCC
Q psy15975 112 TKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCN 161 (312)
Q Consensus 112 ~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h~~~~~~C~ 161 (312)
...||-|...+...+. .+.-.. |||.||..|+..|-... ..|+
T Consensus 5 ~~~C~IC~~~~~~~~~--~~~~~~--C~H~f~~~Ci~~w~~~~---~~CP 47 (55)
T 1iym_A 5 GVECAVCLAELEDGEE--ARFLPR--CGHGFHAECVDMWLGSH---STCP 47 (55)
T ss_dssp SCCCTTTCCCCCTTSC--CEECSS--SCCEECTTHHHHTTTTC---CSCS
T ss_pred CCcCccCCccccCCCc--eEECCC--CCCcccHHHHHHHHHcC---CcCc
Confidence 3579999888765443 333334 99999999999997643 2565
No 29
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=85.03 E-value=0.41 Score=36.93 Aligned_cols=39 Identities=18% Similarity=0.504 Sum_probs=28.4
Q ss_pred CCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCCCCCCCCCCC
Q psy15975 114 ECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCNR 162 (312)
Q Consensus 114 ~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h~~~~~~C~~ 162 (312)
.||-|...+. +.++=. |||.||..|...|-..+. ..|+.
T Consensus 17 ~C~iC~~~~~-----~p~~~~---CgH~fC~~Ci~~~~~~~~--~~CP~ 55 (115)
T 3l11_A 17 QCGICMEILV-----EPVTLP---CNHTLCKPCFQSTVEKAS--LCCPF 55 (115)
T ss_dssp BCTTTCSBCS-----SCEECT---TSCEECHHHHCCCCCTTT--SBCTT
T ss_pred CCccCCcccC-----ceeEcC---CCCHHhHHHHHHHHhHCc--CCCCC
Confidence 7999987764 233333 999999999999986543 45663
No 30
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.92 E-value=0.17 Score=33.73 Aligned_cols=42 Identities=21% Similarity=0.673 Sum_probs=28.1
Q ss_pred CCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCCCCCCCCCC
Q psy15975 112 TKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCN 161 (312)
Q Consensus 112 ~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h~~~~~~C~ 161 (312)
.-.||-|...+... +.- . |||.||..|...|-........|+
T Consensus 15 ~~~C~IC~~~~~~p-----~~~-~--CgH~fC~~Ci~~~~~~~~~~~~CP 56 (58)
T 2ecj_A 15 EASCSVCLEYLKEP-----VII-E--CGHNFCKACITRWWEDLERDFPCP 56 (58)
T ss_dssp CCBCSSSCCBCSSC-----CCC-S--SCCCCCHHHHHHHTTSSCCSCCCS
T ss_pred CCCCccCCcccCcc-----EeC-C--CCCccCHHHHHHHHHhcCCCCCCC
Confidence 35799998877532 332 3 999999999999954311223565
No 31
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=84.48 E-value=0.44 Score=35.33 Aligned_cols=36 Identities=25% Similarity=0.608 Sum_probs=30.2
Q ss_pred CCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCC
Q psy15975 112 TKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEP 152 (312)
Q Consensus 112 ~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~ 152 (312)
.-.||.|+....+..+-..+.|.. |++.|- ++.|.+
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~~--Cg~~~a---ggay~~ 62 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCSY--CDYKFT---GGSYKP 62 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEETT--TCCEEE---CCSSSS
T ss_pred cCcCCCCCCcceeccCCCeEECCC--CCCEec---CCEecc
Confidence 459999999999999989999998 998774 566654
No 32
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=84.16 E-value=0.17 Score=41.91 Aligned_cols=34 Identities=32% Similarity=0.625 Sum_probs=27.4
Q ss_pred CCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCC
Q psy15975 113 KECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPH 153 (312)
Q Consensus 113 k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h 153 (312)
-.||-|...+. +.++... |||.||+.|...|-..
T Consensus 55 ~~C~IC~~~~~-----~p~~~~~--CgH~fC~~Ci~~~~~~ 88 (165)
T 2ckl_B 55 LMCPICLDMLK-----NTMTTKE--CLHRFCADCIITALRS 88 (165)
T ss_dssp HBCTTTSSBCS-----SEEEETT--TCCEEEHHHHHHHHHT
T ss_pred CCCcccChHhh-----CcCEeCC--CCChhHHHHHHHHHHh
Confidence 38999988875 3577744 9999999999999654
No 33
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=84.13 E-value=0.19 Score=38.43 Aligned_cols=41 Identities=29% Similarity=0.587 Sum_probs=28.7
Q ss_pred CCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCCCCCCCCCC
Q psy15975 113 KECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCN 161 (312)
Q Consensus 113 k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h~~~~~~C~ 161 (312)
-.||-|...+. +.++-. |||.||..|...|-....+...|+
T Consensus 22 ~~C~IC~~~~~-----~p~~~~---CgH~fC~~Ci~~~~~~~~~~~~CP 62 (112)
T 1jm7_A 22 LECPICLELIK-----EPVSTK---CDHIFCKFCMLKLLNQKKGPSQCP 62 (112)
T ss_dssp TSCSSSCCCCS-----SCCBCT---TSCCCCSHHHHHHHHSSSSSCCCT
T ss_pred CCCcccChhhc-----CeEECC---CCCHHHHHHHHHHHHhCCCCCCCc
Confidence 58999988773 233433 999999999999876443234565
No 34
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.81 E-value=0.23 Score=35.23 Aligned_cols=34 Identities=32% Similarity=0.871 Sum_probs=24.1
Q ss_pred cCCCcccccccCCccCCCCCchhhHHHhhhcccchhhhHHhhhcCCCCCCCCceeEecCC
Q psy15975 68 CKCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEKDGG 127 (312)
Q Consensus 68 C~C~~~fC~~C~~~~H~p~~C~~~~~w~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK~~G 127 (312)
-+|++.||..|-. .|. ..+ ..||-|+..|....|
T Consensus 42 l~C~H~fh~~Ci~------------~w~-------------~~~-~~CP~Cr~~~~~~~g 75 (75)
T 1x4j_A 42 LPCNHEFHAKCVD------------KWL-------------KAN-RTCPICRADSGPSSG 75 (75)
T ss_dssp ETTTEEEETTHHH------------HHH-------------HHC-SSCTTTCCCCCCCCC
T ss_pred ECCCCHhHHHHHH------------HHH-------------HcC-CcCcCcCCcCCCCCC
Confidence 3499999988743 333 222 489999999987766
No 35
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.76 E-value=0.21 Score=34.52 Aligned_cols=32 Identities=22% Similarity=0.592 Sum_probs=24.7
Q ss_pred CCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCC
Q psy15975 113 KECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEP 152 (312)
Q Consensus 113 k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~ 152 (312)
-.||-|...+.. .++ .. |||.||+.|...|-.
T Consensus 16 ~~C~IC~~~~~~-----p~~-~~--CgH~fC~~Ci~~~~~ 47 (66)
T 2ecy_A 16 YKCEKCHLVLCS-----PKQ-TE--CGHRFCESCMAALLS 47 (66)
T ss_dssp EECTTTCCEESS-----CCC-CS--SSCCCCHHHHHHHHT
T ss_pred CCCCCCChHhcC-----eeE-CC--CCCHHHHHHHHHHHH
Confidence 479999888742 233 23 999999999999974
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=83.39 E-value=0.22 Score=38.09 Aligned_cols=35 Identities=17% Similarity=0.354 Sum_probs=27.5
Q ss_pred CCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCCC
Q psy15975 113 KECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHG 154 (312)
Q Consensus 113 k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h~ 154 (312)
-.||-|...+. +.++... |||.||..|...|-..+
T Consensus 16 ~~C~IC~~~~~-----~p~~~~~--CgH~fC~~Ci~~~~~~~ 50 (108)
T 2ckl_A 16 LMCVLCGGYFI-----DATTIIE--CLHSFCKTCIVRYLETS 50 (108)
T ss_dssp TBCTTTSSBCS-----SEEEETT--TCCEEEHHHHHHHHTSC
T ss_pred CCCccCChHHh-----CcCEeCC--CCChhhHHHHHHHHHhC
Confidence 58999988774 3566644 99999999999996544
No 37
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=83.38 E-value=0.21 Score=37.55 Aligned_cols=39 Identities=18% Similarity=0.577 Sum_probs=29.1
Q ss_pred CCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCCCCCCCCCC
Q psy15975 113 KECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCN 161 (312)
Q Consensus 113 k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h~~~~~~C~ 161 (312)
-.||-|...+.. .++... |||.||..|...|-..+ ..|+
T Consensus 23 ~~C~IC~~~~~~-----p~~~~~--CgH~fC~~Ci~~~~~~~---~~CP 61 (99)
T 2y43_A 23 LRCGICFEYFNI-----AMIIPQ--CSHNYCSLCIRKFLSYK---TQCP 61 (99)
T ss_dssp TBCTTTCSBCSS-----EEECTT--TCCEEEHHHHHHHHTTC---CBCT
T ss_pred CCcccCChhhCC-----cCEECC--CCCHhhHHHHHHHHHCC---CCCC
Confidence 589999887743 455544 99999999999997643 2565
No 38
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=83.01 E-value=0.42 Score=31.92 Aligned_cols=31 Identities=19% Similarity=0.404 Sum_probs=21.3
Q ss_pred hcCCCCCCCCceeEecCCCCceeecCCCCCcce
Q psy15975 110 ANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEF 142 (312)
Q Consensus 110 ~~~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~F 142 (312)
...+.||+|+..+.-...=+.+.|.+ ||+.+
T Consensus 17 ~~~k~CP~CG~~~fm~~~~~R~~C~k--CG~t~ 47 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMADHGDRWACGK--CGYTE 47 (50)
T ss_dssp CSSEECSSSCSSCEEEECSSEEECSS--SCCEE
T ss_pred EecccCCCCCCceEEecCCCeEECCC--CCCEE
Confidence 45689999998433322227899998 99753
No 39
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=82.99 E-value=0.27 Score=34.22 Aligned_cols=53 Identities=26% Similarity=0.570 Sum_probs=31.9
Q ss_pred eecCCcCCCCceeccc-CCCCceEcCCCcccccccCCccCCCCCchhhHHHhhhcccchhhhHHhhhcCCCCCCCCceeE
Q psy15975 45 RWCPSPDCNNAIKVQH-VEARPVVCKCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIE 123 (312)
Q Consensus 45 ~~CP~~~C~~~i~~~~-~~~~~v~C~C~~~fC~~C~~~~H~p~~C~~~~~w~~~~~~~~~~~~~i~~~~k~CP~C~~~Ie 123 (312)
.-|| -|...+.... .+...+.-+|||.||..|-.. |. .. ...||.|+.++.
T Consensus 11 ~~C~--IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~------------~~-------------~~-~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 11 VSCP--ICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD------------SL-------------KN-ANTCPTCRKKIN 62 (71)
T ss_dssp CBCT--TTCCBHHHHHTTTCCEEECTTSCEEEHHHHHH------------HH-------------HH-CSBCTTTCCBCC
T ss_pred CCCc--ccChhhhccccccCCeEeCCCCChHhHHHHHH------------HH-------------Hc-CCCCCCCCCccC
Confidence 3577 3766553321 122234555999999988543 32 11 258999999886
Q ss_pred ec
Q psy15975 124 KD 125 (312)
Q Consensus 124 K~ 125 (312)
..
T Consensus 63 ~~ 64 (71)
T 3ng2_A 63 HK 64 (71)
T ss_dssp CC
T ss_pred hh
Confidence 54
No 40
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.91 E-value=0.19 Score=35.49 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=25.3
Q ss_pred CCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCC
Q psy15975 113 KECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEP 152 (312)
Q Consensus 113 k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~ 152 (312)
-.||-|...+.. .++-.. |||.||+.|...|-.
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~--CgH~fC~~Ci~~~~~ 48 (72)
T 2djb_A 16 ILCSICKGYLID-----ATTITE--CLHTFCKSCIVRHFY 48 (72)
T ss_dssp GSCTTTSSCCSS-----CEECSS--SCCEECHHHHHHHHH
T ss_pred CCCCCCChHHHC-----cCEECC--CCCHHHHHHHHHHHH
Confidence 589999877743 455534 999999999999864
No 41
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=82.88 E-value=0.21 Score=39.27 Aligned_cols=39 Identities=21% Similarity=0.428 Sum_probs=28.0
Q ss_pred CCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCCCCCCCCCC
Q psy15975 113 KECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCN 161 (312)
Q Consensus 113 k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h~~~~~~C~ 161 (312)
-.||-|...+. +.++-. |||.||..|...|-..+. ..|+
T Consensus 53 ~~C~IC~~~~~-----~p~~~~---CgH~fC~~Ci~~~~~~~~--~~CP 91 (124)
T 3fl2_A 53 FQCICCQELVF-----RPITTV---CQHNVCKDCLDRSFRAQV--FSCP 91 (124)
T ss_dssp TBCTTTSSBCS-----SEEECT---TSCEEEHHHHHHHHHTTC--CBCT
T ss_pred CCCCcCChHHc-----CcEEee---CCCcccHHHHHHHHhHCc--CCCC
Confidence 47999988775 345544 999999999998865322 3565
No 42
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=82.87 E-value=0.57 Score=36.33 Aligned_cols=31 Identities=26% Similarity=0.664 Sum_probs=20.4
Q ss_pred eecCCcCCCCceecccCCCCceEcCCCcccccccCCcc
Q psy15975 45 RWCPSPDCNNAIKVQHVEARPVVCKCGHRFCFACGENW 82 (312)
Q Consensus 45 ~~CP~~~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~ 82 (312)
..|| -|...+.. +.+..+|||.||..|-..|
T Consensus 23 ~~C~--IC~~~~~~-----pv~~~~CgH~fC~~Ci~~~ 53 (117)
T 1jm7_B 23 LRCS--RCTNILRE-----PVCLGGCEHIFCSNCVSDC 53 (117)
T ss_dssp TSCS--SSCSCCSS-----CBCCCSSSCCBCTTTGGGG
T ss_pred CCCC--CCChHhhC-----ccEeCCCCCHHHHHHHHHH
Confidence 3688 48766522 2233379999999997654
No 43
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=82.70 E-value=0.33 Score=34.62 Aligned_cols=29 Identities=38% Similarity=0.859 Sum_probs=22.2
Q ss_pred eEcCCCcc-cccccCCccCCCCCchhhHHHhhhcccchhhhHHhhhcCCCCCCCCceeEe
Q psy15975 66 VVCKCGHR-FCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEK 124 (312)
Q Consensus 66 v~C~C~~~-fC~~C~~~~H~p~~C~~~~~w~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK 124 (312)
+.=+|||. ||..|...| +.||-|+.+|.+
T Consensus 38 ~~~pCgH~~~C~~C~~~~------------------------------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 38 VFVPCGHLVTCKQCAEAV------------------------------DKCPMCYTVITF 67 (74)
T ss_dssp EEETTCCBCCCHHHHTTC------------------------------SBCTTTCCBCSE
T ss_pred EEcCCCChhHHHHhhhcC------------------------------ccCCCcCcCccC
Confidence 33379999 999995543 589999988865
No 44
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=82.58 E-value=0.61 Score=31.24 Aligned_cols=13 Identities=38% Similarity=0.869 Sum_probs=11.0
Q ss_pred CCCcccccccCCc
Q psy15975 69 KCGHRFCFACGEN 81 (312)
Q Consensus 69 ~C~~~fC~~C~~~ 81 (312)
+|||.||..|...
T Consensus 23 ~CgH~fC~~Ci~~ 35 (56)
T 1bor_A 23 PCLHTLCSGCLEA 35 (56)
T ss_dssp TTSCCSBTTTCSS
T ss_pred CCCCcccHHHHcc
Confidence 5999999999654
No 45
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=82.53 E-value=0.24 Score=41.13 Aligned_cols=31 Identities=42% Similarity=0.739 Sum_probs=22.4
Q ss_pred ceecCCcCCCCceecccCCCCceEcCCCcccccccCCcc
Q psy15975 44 LRWCPSPDCNNAIKVQHVEARPVVCKCGHRFCFACGENW 82 (312)
Q Consensus 44 ~~~CP~~~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~ 82 (312)
..-|| -|..++.. .+.++||+.||..|...|
T Consensus 18 ~~~C~--IC~~~~~~------pv~~~CgH~fC~~Ci~~~ 48 (170)
T 3hcs_A 18 KYECP--ICLMALRE------AVQTPCGHRFCKACIIKS 48 (170)
T ss_dssp GGBCT--TTCSBCSS------EEECTTSCEEEHHHHHHH
T ss_pred CCCCC--CCChhhcC------cEECCCCCHHHHHHHHHH
Confidence 34677 47766532 367889999999998766
No 46
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=82.49 E-value=0.25 Score=34.21 Aligned_cols=34 Identities=29% Similarity=0.825 Sum_probs=24.4
Q ss_pred CCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCC
Q psy15975 112 TKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEP 152 (312)
Q Consensus 112 ~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~ 152 (312)
...||-|...+.. ...-.. |||.||+.|...|-.
T Consensus 5 ~~~C~IC~~~~~~-----~~~~~~--C~H~fc~~Ci~~~~~ 38 (68)
T 1chc_A 5 AERCPICLEDPSN-----YSMALP--CLHAFCYVCITRWIR 38 (68)
T ss_dssp CCCCSSCCSCCCS-----CEEETT--TTEEESTTHHHHHHH
T ss_pred CCCCeeCCccccC-----CcEecC--CCCeeHHHHHHHHHh
Confidence 4689999887642 223344 999999999988864
No 47
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=82.45 E-value=0.5 Score=35.94 Aligned_cols=47 Identities=30% Similarity=0.775 Sum_probs=36.1
Q ss_pred CCCCCCCCceeEecCCCCceeecCCCCCcc-----eecccCCCCCC---CCCCCCCCCC
Q psy15975 112 TKECPKCLVTIEKDGGCNHMVCKNQSCKAE-----FCWVCLGPWEP---HGSSWYSCNR 162 (312)
Q Consensus 112 ~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~-----FCw~C~~~w~~---h~~~~~~C~~ 162 (312)
...||.|+.+++.++| +..|.. |+.+ ||--|.++... .|.--|.|+.
T Consensus 32 ~~~CP~Cq~eL~~~g~--~~hC~~--C~~~f~~~a~CPdC~q~LevLkACGAvdYFC~~ 86 (101)
T 2jne_A 32 ELHCPQCQHVLDQDNG--HARCRS--CGEFIEMKALCPDCHQPLQVLKACGAVDYFCQH 86 (101)
T ss_dssp CCBCSSSCSBEEEETT--EEEETT--TCCEEEEEEECTTTCSBCEEEEETTEEEEEETT
T ss_pred cccCccCCCcceecCC--EEECcc--ccchhhccccCcchhhHHHHHHHhcCcchhhcc
Confidence 3799999999999988 778998 9854 69999998754 4443355653
No 48
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.43 E-value=0.61 Score=33.78 Aligned_cols=54 Identities=28% Similarity=0.633 Sum_probs=32.4
Q ss_pred eecCCcCCCCceecccCCCCceEcCCCcccccccCCccCCCCCchhhHHHhhhcccchhhhHHhhhcCCCCCCCCceeEe
Q psy15975 45 RWCPSPDCNNAIKVQHVEARPVVCKCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEK 124 (312)
Q Consensus 45 ~~CP~~~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~H~p~~C~~~~~w~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK 124 (312)
..|| =|...+... ....+.-+|||.||..|-. .|.... .+...||.|+.++..
T Consensus 16 ~~C~--IC~~~~~~~--~~~~~~~~CgH~fC~~Ci~------------~~~~~~-----------~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 16 LECP--ICMESFTEE--QLRPKLLHCGHTICRQCLE------------KLLASS-----------INGVRCPFCSKITRI 68 (88)
T ss_dssp CBCT--TTCCBCCTT--SSCEEECSSSCEEEHHHHH------------HHHHHC-----------SSCBCCTTTCCCBCC
T ss_pred CCCc--cCCcccccc--CCCeEECCCCChhhHHHHH------------HHHHcC-----------CCCcCCCCCCCcccc
Confidence 4577 376654332 1223555799999998853 232211 124689999998765
Q ss_pred c
Q psy15975 125 D 125 (312)
Q Consensus 125 ~ 125 (312)
.
T Consensus 69 ~ 69 (88)
T 2ct2_A 69 T 69 (88)
T ss_dssp S
T ss_pred h
Confidence 4
No 49
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=82.24 E-value=0.51 Score=32.15 Aligned_cols=31 Identities=16% Similarity=0.391 Sum_probs=22.2
Q ss_pred hcCCCCCCCCceeEecCCCCceeecCCCCCcce
Q psy15975 110 ANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEF 142 (312)
Q Consensus 110 ~~~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~F 142 (312)
...+.||+|+..+.-...-+.+.|.+ |++.+
T Consensus 16 ~~~~fCPkCG~~~~ma~~~dr~~C~k--Cgyt~ 46 (55)
T 2k4x_A 16 RKHRFCPRCGPGVFLAEHADRYSCGR--CGYTE 46 (55)
T ss_dssp CSSCCCTTTTTTCCCEECSSEEECTT--TCCCE
T ss_pred EccccCcCCCCceeEeccCCEEECCC--CCCEE
Confidence 35689999998443223346899998 99874
No 50
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=81.72 E-value=0.74 Score=37.65 Aligned_cols=47 Identities=26% Similarity=0.581 Sum_probs=30.0
Q ss_pred eecCCcCCCCceecccCCCCceEcCCCcccccccCCccCCCCCchhhHHHhhhcccchhhhHHhhhcCCCCCCCCceeEe
Q psy15975 45 RWCPSPDCNNAIKVQHVEARPVVCKCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEK 124 (312)
Q Consensus 45 ~~CP~~~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~H~p~~C~~~~~w~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK 124 (312)
..|| -|...+.. .++-+||+.||..|-.. |+......||.|+.++..
T Consensus 79 ~~C~--IC~~~~~~------pv~~~CgH~fC~~Ci~~-------------------------~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 79 FMCV--CCQELVYQ------PVTTECFHNVCKDCLQR-------------------------SFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp TBCT--TTSSBCSS------EEECTTSCEEEHHHHHH-------------------------HHHTTCCBCTTTCCBCCT
T ss_pred CEee--cCChhhcC------CEEcCCCCchhHHHHHH-------------------------HHHhCCCcCCCCCccCCC
Confidence 3688 47765421 24557999999988532 222233579999888754
No 51
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=81.71 E-value=0.3 Score=34.82 Aligned_cols=39 Identities=15% Similarity=0.427 Sum_probs=28.5
Q ss_pred CCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCCCCCCCCCC
Q psy15975 113 KECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCN 161 (312)
Q Consensus 113 k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h~~~~~~C~ 161 (312)
-.||-|...+. +.++-. |||.||..|...|-..+. ..|+
T Consensus 9 ~~C~IC~~~~~-----~Pv~~~---CgH~fc~~Ci~~~~~~~~--~~CP 47 (78)
T 1t1h_A 9 FRCPISLELMK-----DPVIVS---TGQTYERSSIQKWLDAGH--KTCP 47 (78)
T ss_dssp SSCTTTSCCCS-----SEEEET---TTEEEEHHHHHHHHTTTC--CBCT
T ss_pred CCCCCcccccc-----CCEEcC---CCCeecHHHHHHHHHHCc--CCCC
Confidence 47999987764 345554 999999999999976532 3565
No 52
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=81.48 E-value=0.87 Score=32.39 Aligned_cols=30 Identities=13% Similarity=0.250 Sum_probs=24.9
Q ss_pred cCCCCCCCCceeEecCCCCceeecCCCCCcce
Q psy15975 111 NTKECPKCLVTIEKDGGCNHMVCKNQSCKAEF 142 (312)
Q Consensus 111 ~~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~F 142 (312)
..-.||.|+.+.+-+.+...+.|.. ||..|
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~--cg~~Y 36 (68)
T 2jr6_A 7 DILVCPVTKGRLEYHQDKQELWSRQ--AKLAY 36 (68)
T ss_dssp CCCBCSSSCCBCEEETTTTEEEETT--TTEEE
T ss_pred hheECCCCCCcCeEeCCCCEEEcCC--CCcEe
Confidence 3458999999999998889999987 77554
No 53
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=81.21 E-value=0.31 Score=37.95 Aligned_cols=29 Identities=45% Similarity=0.851 Sum_probs=19.3
Q ss_pred eecCCcCCCCceecccCCCCceEcCCCcccccccCCc
Q psy15975 45 RWCPSPDCNNAIKVQHVEARPVVCKCGHRFCFACGEN 81 (312)
Q Consensus 45 ~~CP~~~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~ 81 (312)
..|| -|...+.. .+..+||+.||..|-..
T Consensus 19 ~~C~--IC~~~~~~------p~~~~CgH~fC~~Ci~~ 47 (118)
T 3hct_A 19 YECP--ICLMALRE------AVQTPCGHRFCKACIIK 47 (118)
T ss_dssp GBCT--TTCSBCSS------EEECTTSCEEEHHHHHH
T ss_pred CCCC--cCChhhcC------eEECCcCChhhHHHHHH
Confidence 4677 47665421 25668999999988543
No 54
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.11 E-value=0.41 Score=33.55 Aligned_cols=40 Identities=30% Similarity=0.619 Sum_probs=28.7
Q ss_pred CCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCCCCCCCCCCC
Q psy15975 112 TKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCNR 162 (312)
Q Consensus 112 ~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h~~~~~~C~~ 162 (312)
...||-|...+.. .++-. |||.||+.|...|-..+ ..|+.
T Consensus 15 ~~~C~IC~~~~~~-----~~~~~---CgH~fC~~Ci~~~~~~~---~~CP~ 54 (71)
T 2d8t_A 15 VPECAICLQTCVH-----PVSLP---CKHVFCYLCVKGASWLG---KRCAL 54 (71)
T ss_dssp CCBCSSSSSBCSS-----EEEET---TTEEEEHHHHHHCTTCS---SBCSS
T ss_pred CCCCccCCcccCC-----CEEcc---CCCHHHHHHHHHHHHCC---CcCcC
Confidence 3579999877632 24444 99999999999997654 35653
No 55
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=81.11 E-value=0.28 Score=34.83 Aligned_cols=41 Identities=17% Similarity=0.366 Sum_probs=28.4
Q ss_pred CCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCCCCCCCCCC
Q psy15975 113 KECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCN 161 (312)
Q Consensus 113 k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h~~~~~~C~ 161 (312)
-.||-|...+. +.++-.. |||.||+.|...|-...+ ...|+
T Consensus 16 ~~C~IC~~~~~-----~p~~~~~--CgH~fC~~Ci~~~~~~~~-~~~CP 56 (74)
T 2yur_A 16 LLCLICKDIMT-----DAVVIPC--CGNSYCDECIRTALLESD-EHTCP 56 (74)
T ss_dssp GSCSSSCCCCT-----TCEECSS--SCCEECTTHHHHHHHHSS-SSCCS
T ss_pred CCCcCCChHHh-----CCeEcCC--CCCHHHHHHHHHHHHhcC-CCcCC
Confidence 48999987764 3455443 999999999999975321 13565
No 56
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=80.68 E-value=0.37 Score=31.69 Aligned_cols=38 Identities=21% Similarity=0.376 Sum_probs=27.1
Q ss_pred CCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCCC
Q psy15975 113 KECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHG 154 (312)
Q Consensus 113 k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h~ 154 (312)
..||-|...+...+ ..+.-.. |+|.||..|...|-..+
T Consensus 6 ~~C~IC~~~~~~~~--~~~~~~~--CgH~fc~~Ci~~~~~~~ 43 (55)
T 2ecm_A 6 SGCPICLEDIHTSR--VVAHVLP--CGHLLHRTCYEEMLKEG 43 (55)
T ss_dssp CSCTTTCCCCCTTT--SCEEECT--TSCEEETTHHHHHHHHT
T ss_pred CcCcccChhhcCCC--cCeEecC--CCCcccHHHHHHHHHcC
Confidence 57999988774322 2344555 99999999999996543
No 57
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=80.38 E-value=0.21 Score=34.83 Aligned_cols=40 Identities=25% Similarity=0.482 Sum_probs=27.9
Q ss_pred CCCCCCCCceeEec-CCCCceeecCCCCCcceecccCCCCCCC
Q psy15975 112 TKECPKCLVTIEKD-GGCNHMVCKNQSCKAEFCWVCLGPWEPH 153 (312)
Q Consensus 112 ~k~CP~C~~~IeK~-~GCnhMtC~~~~C~~~FCw~C~~~w~~h 153 (312)
...||-|...+... ++=..+.-.. |||.||+.|...|-..
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~--CgH~fc~~Ci~~~~~~ 50 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTE--CGHVFCSQCLRDSLKN 50 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECT--TSCEEEHHHHHHHHHH
T ss_pred CCCCcccChhhhccccccCCeEeCC--CCChHhHHHHHHHHHc
Confidence 45799998887653 2223334444 9999999999999643
No 58
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=80.16 E-value=0.44 Score=36.74 Aligned_cols=30 Identities=27% Similarity=0.584 Sum_probs=19.9
Q ss_pred ecCCcCCCCceecccCCCCceEcCCCcccccccCCccC
Q psy15975 46 WCPSPDCNNAIKVQHVEARPVVCKCGHRFCFACGENWH 83 (312)
Q Consensus 46 ~CP~~~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~H 83 (312)
.|| -|...+.. .++=+|||.||..|-..|-
T Consensus 17 ~C~--iC~~~~~~------p~~~~CgH~fC~~Ci~~~~ 46 (115)
T 3l11_A 17 QCG--ICMEILVE------PVTLPCNHTLCKPCFQSTV 46 (115)
T ss_dssp BCT--TTCSBCSS------CEECTTSCEECHHHHCCCC
T ss_pred CCc--cCCcccCc------eeEcCCCCHHhHHHHHHHH
Confidence 477 47655421 2333799999999987654
No 59
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=80.01 E-value=0.73 Score=35.54 Aligned_cols=27 Identities=33% Similarity=0.717 Sum_probs=18.5
Q ss_pred ecCCcCCCCceecccCCCCceEcCCCcccccccCC
Q psy15975 46 WCPSPDCNNAIKVQHVEARPVVCKCGHRFCFACGE 80 (312)
Q Consensus 46 ~CP~~~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~ 80 (312)
.|| -|...+.. .+.-+||+.||..|-.
T Consensus 25 ~C~--IC~~~~~~------p~~~~CgH~fC~~Ci~ 51 (116)
T 1rmd_A 25 SCQ--ICEHILAD------PVETSCKHLFCRICIL 51 (116)
T ss_dssp BCT--TTCSBCSS------EEECTTSCEEEHHHHH
T ss_pred CCC--CCCcHhcC------cEEcCCCCcccHHHHH
Confidence 588 47666521 2455799999998854
No 60
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=79.92 E-value=0.38 Score=36.72 Aligned_cols=27 Identities=26% Similarity=0.584 Sum_probs=18.7
Q ss_pred eecCCcCCCCceecccCCCCceEc-CCCcccccccC
Q psy15975 45 RWCPSPDCNNAIKVQHVEARPVVC-KCGHRFCFACG 79 (312)
Q Consensus 45 ~~CP~~~C~~~i~~~~~~~~~v~C-~C~~~fC~~C~ 79 (312)
..|| -|...+. ..++. +|||.||..|-
T Consensus 16 ~~C~--IC~~~~~------~p~~~~~CgH~fC~~Ci 43 (108)
T 2ckl_A 16 LMCV--LCGGYFI------DATTIIECLHSFCKTCI 43 (108)
T ss_dssp TBCT--TTSSBCS------SEEEETTTCCEEEHHHH
T ss_pred CCCc--cCChHHh------CcCEeCCCCChhhHHHH
Confidence 3688 4776652 13566 69999999884
No 61
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=79.35 E-value=1.2 Score=32.99 Aligned_cols=34 Identities=9% Similarity=0.157 Sum_probs=29.5
Q ss_pred ccCC--CChHHHhhhCCCHHHHHHHHHHHHHHHHhhC
Q psy15975 7 IRPG--VDDGTVMRLVRDPKVKLKYQHLITNSFVECN 41 (312)
Q Consensus 7 ~~~~--i~~~~i~~~l~~~e~~~~y~~~~~~~~v~~~ 41 (312)
++.. ++++.|..++. ++++++|+++++++||+++
T Consensus 58 C~~~~~~~~~~i~~ll~-~~~~~ky~~~~~~~~v~~~ 93 (94)
T 1wim_A 58 CPKQGHLQENEIECMVA-AEIMQRYKKLQFERSGPSS 93 (94)
T ss_dssp CSSCCEECHHHHHHHSC-HHHHHHHHHHHHHSSCSSC
T ss_pred CCCCCccCHHHHHHHCC-HHHHHHHHHHHHHhhhccC
Confidence 6667 99999998885 7899999999999998765
No 62
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=79.10 E-value=0.48 Score=34.41 Aligned_cols=43 Identities=26% Similarity=0.609 Sum_probs=28.0
Q ss_pred CCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCCCCCCCCCC
Q psy15975 113 KECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCN 161 (312)
Q Consensus 113 k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h~~~~~~C~ 161 (312)
..||-|.-++.. ..-..+.|. |||.||..|+..+...+ .+.|+
T Consensus 12 ~~CpICle~~~~-~d~~~~p~~---CGH~fC~~Cl~~~~~~~--~~~CP 54 (78)
T 1e4u_A 12 VECPLCMEPLEI-DDINFFPCT---CGYQICRFCWHRIRTDE--NGLCP 54 (78)
T ss_dssp CBCTTTCCBCCT-TTTTCCSST---TSCCCCHHHHHHHTTSS--CSBCT
T ss_pred CcCCccCccCcc-ccccccccC---CCCCcCHHHHHHHHhcC--CCCCC
Confidence 579999987743 222334465 99999999987754322 24566
No 63
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=79.03 E-value=0.66 Score=32.97 Aligned_cols=48 Identities=23% Similarity=0.587 Sum_probs=28.8
Q ss_pred ecCCcCCCCceecccCCCCceEcCCCcccccccCCccCCCCCchhhHHHhhhcccchhhhHHhhhcCCCCCCCCceeEe
Q psy15975 46 WCPSPDCNNAIKVQHVEARPVVCKCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEK 124 (312)
Q Consensus 46 ~CP~~~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~H~p~~C~~~~~w~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK 124 (312)
-|| =|-..+... ...+.-+|+|.||..|... |. .. ...||-|+..|..
T Consensus 17 ~C~--IC~~~~~~~---~~~~~~~C~H~fc~~Ci~~------------~~-------------~~-~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 17 ECP--VCKEDYALG---ESVRQLPCNHLFHDSCIVP------------WL-------------EQ-HDSCPVCRKSLTG 64 (78)
T ss_dssp CCT--TTTSCCCTT---SCEEECTTSCEEETTTTHH------------HH-------------TT-TCSCTTTCCCCCC
T ss_pred CCe--eCCccccCC---CCEEEeCCCCeecHHHHHH------------HH-------------Hc-CCcCcCcCCccCC
Confidence 566 365554322 1223446999999988643 32 11 2589999988754
No 64
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=78.96 E-value=0.36 Score=33.50 Aligned_cols=39 Identities=23% Similarity=0.554 Sum_probs=27.1
Q ss_pred cCCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCCC
Q psy15975 111 NTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHG 154 (312)
Q Consensus 111 ~~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h~ 154 (312)
....||-|...+.... . ..... |||.||+.|+..|-..+
T Consensus 13 ~~~~C~IC~~~~~~~~--~-~~~~~--C~H~fc~~Ci~~~~~~~ 51 (69)
T 2kiz_A 13 TEEKCTICLSILEEGE--D-VRRLP--CMHLFHQVCVDQWLITN 51 (69)
T ss_dssp CCCSBTTTTBCCCSSS--C-EEECT--TSCEEEHHHHHHHHHHC
T ss_pred CCCCCeeCCccccCCC--c-EEEeC--CCCHHHHHHHHHHHHcC
Confidence 3468999988774322 2 33333 99999999999996543
No 65
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=78.31 E-value=0.34 Score=36.34 Aligned_cols=27 Identities=22% Similarity=0.742 Sum_probs=18.2
Q ss_pred ecCCcCCCCceecccCCCCceEc-CCCcccccccCC
Q psy15975 46 WCPSPDCNNAIKVQHVEARPVVC-KCGHRFCFACGE 80 (312)
Q Consensus 46 ~CP~~~C~~~i~~~~~~~~~v~C-~C~~~fC~~C~~ 80 (312)
.|| -|...+.. .+.. +|||.||..|-.
T Consensus 24 ~C~--IC~~~~~~------p~~~~~CgH~fC~~Ci~ 51 (99)
T 2y43_A 24 RCG--ICFEYFNI------AMIIPQCSHNYCSLCIR 51 (99)
T ss_dssp BCT--TTCSBCSS------EEECTTTCCEEEHHHHH
T ss_pred Ccc--cCChhhCC------cCEECCCCCHhhHHHHH
Confidence 587 47665421 3555 599999998854
No 66
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=77.62 E-value=0.3 Score=33.15 Aligned_cols=39 Identities=23% Similarity=0.453 Sum_probs=26.2
Q ss_pred CCCCCCCceeEecC-CCCceeecCCCCCcceecccCCCCCCC
Q psy15975 113 KECPKCLVTIEKDG-GCNHMVCKNQSCKAEFCWVCLGPWEPH 153 (312)
Q Consensus 113 k~CP~C~~~IeK~~-GCnhMtC~~~~C~~~FCw~C~~~w~~h 153 (312)
-.||-|...+.... +-..+.-.. |||.||..|...|-..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~--CgH~fc~~Ci~~~~~~ 43 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTE--CGHVFCSQCLRDSLKN 43 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEET--TSCEEEHHHHHHHHHH
T ss_pred CCCCccChhhhCccccCCCEEeCC--CCCchhHHHHHHHHHc
Confidence 46888887775531 222333334 9999999999999653
No 67
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=77.61 E-value=0.32 Score=35.87 Aligned_cols=33 Identities=18% Similarity=0.384 Sum_probs=25.0
Q ss_pred CCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCC
Q psy15975 113 KECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEP 152 (312)
Q Consensus 113 k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~ 152 (312)
-.||-|...+. +.++-.. |||.||..|...|-.
T Consensus 14 ~~C~IC~~~~~-----~p~~~~~--CgH~fC~~Ci~~~~~ 46 (92)
T 3ztg_A 14 LLCLICKDIMT-----DAVVIPC--CGNSYCDECIRTALL 46 (92)
T ss_dssp TEETTTTEECS-----SCEECTT--TCCEECHHHHHHHHH
T ss_pred CCCCCCChhhc-----CceECCC--CCCHHHHHHHHHHHH
Confidence 47999987764 3455444 999999999998853
No 68
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=77.43 E-value=0.96 Score=35.02 Aligned_cols=35 Identities=17% Similarity=0.497 Sum_probs=25.8
Q ss_pred cCCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCC
Q psy15975 111 NTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEP 152 (312)
Q Consensus 111 ~~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~ 152 (312)
..-.||-|...+. +.++-.. |||.||..|...|-.
T Consensus 21 ~~~~C~IC~~~~~-----~pv~~~~--CgH~fC~~Ci~~~~~ 55 (117)
T 1jm7_B 21 KLLRCSRCTNILR-----EPVCLGG--CEHIFCSNCVSDCIG 55 (117)
T ss_dssp HTTSCSSSCSCCS-----SCBCCCS--SSCCBCTTTGGGGTT
T ss_pred hCCCCCCCChHhh-----CccEeCC--CCCHHHHHHHHHHhc
Confidence 3458999987763 2344323 999999999999965
No 69
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=77.42 E-value=0.9 Score=34.51 Aligned_cols=27 Identities=48% Similarity=0.870 Sum_probs=17.7
Q ss_pred ecCCcCCCCceecccCCCCceEcCCCcccccccCC
Q psy15975 46 WCPSPDCNNAIKVQHVEARPVVCKCGHRFCFACGE 80 (312)
Q Consensus 46 ~CP~~~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~ 80 (312)
.|| -|...+.. .+.-+|||.||..|-.
T Consensus 23 ~C~--IC~~~~~~------p~~~~CgH~fC~~Ci~ 49 (112)
T 1jm7_A 23 ECP--ICLELIKE------PVSTKCDHIFCKFCML 49 (112)
T ss_dssp SCS--SSCCCCSS------CCBCTTSCCCCSHHHH
T ss_pred CCc--ccChhhcC------eEECCCCCHHHHHHHH
Confidence 588 47665421 1334799999998853
No 70
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.41 E-value=0.41 Score=33.94 Aligned_cols=37 Identities=22% Similarity=0.516 Sum_probs=27.0
Q ss_pred CCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCC
Q psy15975 112 TKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPH 153 (312)
Q Consensus 112 ~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h 153 (312)
...||-|...+.... .+.... |+|.||+.|...|-..
T Consensus 23 ~~~C~IC~~~~~~~~---~~~~l~--C~H~fh~~Ci~~w~~~ 59 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQ---LLRVLP--CNHEFHAKCVDKWLKA 59 (75)
T ss_dssp CCEETTTTEECCBTC---EEEEET--TTEEEETTHHHHHHHH
T ss_pred CCCCeECCcccCCCC---eEEEEC--CCCHhHHHHHHHHHHc
Confidence 357999998775433 334444 9999999999999643
No 71
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.23 E-value=0.43 Score=33.23 Aligned_cols=38 Identities=24% Similarity=0.738 Sum_probs=27.5
Q ss_pred CCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCCCCCCCCCC
Q psy15975 112 TKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCN 161 (312)
Q Consensus 112 ~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h~~~~~~C~ 161 (312)
...||-|...+.. +.=. |||.||+.|...|-... ..|+
T Consensus 15 ~~~C~IC~~~~~~------~~~~---CgH~fc~~Ci~~~~~~~---~~CP 52 (70)
T 2ecn_A 15 EEECCICMDGRAD------LILP---CAHSFCQKCIDKWSDRH---RNCP 52 (70)
T ss_dssp CCCCSSSCCSCCS------EEET---TTEEECHHHHHHSSCCC---SSCH
T ss_pred CCCCeeCCcCccC------cccC---CCCcccHHHHHHHHHCc---CcCC
Confidence 4589999877643 3333 99999999999997632 3565
No 72
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=76.80 E-value=0.84 Score=32.40 Aligned_cols=38 Identities=24% Similarity=0.457 Sum_probs=25.7
Q ss_pred CCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCCC
Q psy15975 112 TKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHG 154 (312)
Q Consensus 112 ~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h~ 154 (312)
...||-|...+.... ..+. .. |+|.||+.|+..|-...
T Consensus 15 ~~~C~IC~~~~~~~~--~~~~-~~--C~H~fc~~Ci~~~~~~~ 52 (78)
T 2ect_A 15 GLECPVCKEDYALGE--SVRQ-LP--CNHLFHDSCIVPWLEQH 52 (78)
T ss_dssp SCCCTTTTSCCCTTS--CEEE-CT--TSCEEETTTTHHHHTTT
T ss_pred CCCCeeCCccccCCC--CEEE-eC--CCCeecHHHHHHHHHcC
Confidence 468999988775332 1122 23 99999999999996543
No 73
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.20 E-value=0.44 Score=34.28 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=25.0
Q ss_pred CCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCC
Q psy15975 113 KECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPH 153 (312)
Q Consensus 113 k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h 153 (312)
-.||-|...+.. .++- . |||.||..|...|-..
T Consensus 16 ~~C~IC~~~~~~-----p~~~-~--CgH~fC~~Ci~~~~~~ 48 (81)
T 2csy_A 16 FRCFICRQAFQN-----PVVT-K--CRHYFCESCALEHFRA 48 (81)
T ss_dssp SBCSSSCSBCCS-----EEEC-T--TSCEEEHHHHHHHHHH
T ss_pred CCCcCCCchhcC-----eeEc-c--CCCHhHHHHHHHHHHC
Confidence 479999888733 3443 3 9999999999999653
No 74
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.63 E-value=0.38 Score=33.10 Aligned_cols=39 Identities=26% Similarity=0.452 Sum_probs=26.8
Q ss_pred CCCCCCCCceeEecCC-CCceeecCCCCCcceecccCCCCCC
Q psy15975 112 TKECPKCLVTIEKDGG-CNHMVCKNQSCKAEFCWVCLGPWEP 152 (312)
Q Consensus 112 ~k~CP~C~~~IeK~~G-CnhMtC~~~~C~~~FCw~C~~~w~~ 152 (312)
...||-|...+..... -..+.-.. |||.||..|...|-.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~--CgH~fc~~Ci~~~~~ 54 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTE--CGHVFCSQCLRDSLK 54 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECS--SSCEEEHHHHHHHHH
T ss_pred CCCCcccCccccccccccCCeEeCC--CCChhcHHHHHHHHH
Confidence 4589999888765421 12223333 999999999999964
No 75
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=74.51 E-value=0.44 Score=35.32 Aligned_cols=42 Identities=21% Similarity=0.435 Sum_probs=29.1
Q ss_pred CCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCCCCCCCCCC
Q psy15975 112 TKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCN 161 (312)
Q Consensus 112 ~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h~~~~~~C~ 161 (312)
...||-|...+.... ..+.- . |||.||..|...|-... ..|+
T Consensus 40 ~~~C~IC~~~~~~~~--~~~~l-~--C~H~Fh~~Ci~~wl~~~---~~CP 81 (91)
T 2l0b_A 40 EMCCPICCSEYVKGD--VATEL-P--CHHYFHKPCVSIWLQKS---GTCP 81 (91)
T ss_dssp CSEETTTTEECCTTC--EEEEE-T--TTEEEEHHHHHHHHTTT---CBCT
T ss_pred CCCCcccChhhcCCC--cEEec-C--CCChHHHHHHHHHHHcC---CcCc
Confidence 357999988775433 22333 3 99999999999997543 2565
No 76
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=74.50 E-value=0.64 Score=38.45 Aligned_cols=16 Identities=19% Similarity=0.692 Sum_probs=8.7
Q ss_pred ceecCCcCCCCceecc
Q psy15975 44 LRWCPSPDCNNAIKVQ 59 (312)
Q Consensus 44 ~~~CP~~~C~~~i~~~ 59 (312)
.+.||+.+|+..+...
T Consensus 82 ~v~C~n~GC~~~~~~~ 97 (170)
T 3hcs_A 82 MVKCPNEGCLHKMELR 97 (170)
T ss_dssp EEECCSTTCCCEEEGG
T ss_pred ccCCCCCCCCceecHh
Confidence 3456655666555543
No 77
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.47 E-value=0.52 Score=33.76 Aligned_cols=33 Identities=27% Similarity=0.686 Sum_probs=24.6
Q ss_pred CCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCC
Q psy15975 112 TKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEP 152 (312)
Q Consensus 112 ~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~ 152 (312)
.-.||-|...+.. .++-. |||.||..|+..|-.
T Consensus 19 ~~~C~IC~~~~~~-----p~~~~---CgH~fC~~Ci~~~~~ 51 (85)
T 2ecv_A 19 EVTCPICLELLTQ-----PLSLD---CGHSFCQACLTANHK 51 (85)
T ss_dssp CCCCTTTCSCCSS-----CBCCS---SSCCBCTTHHHHHHH
T ss_pred CCCCCCCCcccCC-----ceeCC---CCCHHHHHHHHHHHH
Confidence 3589999887743 23333 999999999999843
No 78
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=72.87 E-value=0.53 Score=33.71 Aligned_cols=32 Identities=25% Similarity=0.688 Sum_probs=24.4
Q ss_pred CCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCC
Q psy15975 113 KECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEP 152 (312)
Q Consensus 113 k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~ 152 (312)
-.||-|...+.. .+.-. |||.||..|+..|-.
T Consensus 20 ~~C~IC~~~~~~-----p~~~~---CgH~fC~~Ci~~~~~ 51 (85)
T 2ecw_A 20 VTCPICLELLKE-----PVSAD---CNHSFCRACITLNYE 51 (85)
T ss_dssp TSCTTTCSCCSS-----CEECT---TSCCBCHHHHHHHHH
T ss_pred CCCcCCChhhCc-----ceeCC---CCCHHHHHHHHHHHH
Confidence 489999877643 34444 999999999998854
No 79
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=72.84 E-value=2.2 Score=37.46 Aligned_cols=14 Identities=7% Similarity=-0.071 Sum_probs=11.2
Q ss_pred eEcCCCcccccccC
Q psy15975 66 VVCKCGHRFCFACG 79 (312)
Q Consensus 66 v~C~C~~~fC~~C~ 79 (312)
|+-+||+.||..|-
T Consensus 222 v~~~~gh~f~~~~i 235 (281)
T 2c2l_A 222 CITPSGITYDRKDI 235 (281)
T ss_dssp EECSSCCEEETTHH
T ss_pred eECCCCCEECHHHH
Confidence 66669999998774
No 80
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=72.79 E-value=0.94 Score=31.31 Aligned_cols=35 Identities=31% Similarity=0.806 Sum_probs=24.4
Q ss_pred ecCCcCCCCceecccCCCCceEcC-CCcccccccCCccCCCC
Q psy15975 46 WCPSPDCNNAIKVQHVEARPVVCK-CGHRFCFACGENWHDPV 86 (312)
Q Consensus 46 ~CP~~~C~~~i~~~~~~~~~v~C~-C~~~fC~~C~~~~H~p~ 86 (312)
.|- +|...+.. .....|+ |+..||..|..-.|..+
T Consensus 17 ~C~--~C~~~~~~----~~~y~C~~C~~~FC~dCD~fiHe~L 52 (59)
T 1z60_A 17 FCY--GCQGELKD----QHVYVCAVCQNVFCVDCDVFVHDSL 52 (59)
T ss_dssp EET--TTTEECTT----SEEECCTTTTCCBCHHHHHTTTTTS
T ss_pred ccc--ccCcccCC----CccEECCccCcCcccchhHHHHhhc
Confidence 565 58776631 1237899 99999999877667553
No 81
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.39 E-value=0.45 Score=33.48 Aligned_cols=37 Identities=27% Similarity=0.600 Sum_probs=26.5
Q ss_pred CCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCC
Q psy15975 112 TKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPH 153 (312)
Q Consensus 112 ~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h 153 (312)
...||-|...+..... .+... |+|.||+.|...|-..
T Consensus 15 ~~~C~IC~~~~~~~~~--~~~~~---C~H~f~~~Ci~~~~~~ 51 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDE--LGICP---CKHAFHRKCLIKWLEV 51 (74)
T ss_dssp SCBCSSSCCBCCSSSC--EEEET---TTEEEEHHHHHHHHHH
T ss_pred CCCCcCCCcccCCCCc--EEEcC---CCCEecHHHHHHHHHc
Confidence 3589999888754432 22233 9999999999999654
No 82
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=71.69 E-value=0.78 Score=37.12 Aligned_cols=39 Identities=21% Similarity=0.607 Sum_probs=28.6
Q ss_pred CCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCCCCCCCCCC
Q psy15975 113 KECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCN 161 (312)
Q Consensus 113 k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h~~~~~~C~ 161 (312)
-.||-|...+. +.++.. |||.||..|...|-..+. ..|+
T Consensus 32 ~~C~IC~~~~~-----~pv~~~---CgH~FC~~Ci~~~~~~~~--~~CP 70 (141)
T 3knv_A 32 YLCSACRNVLR-----RPFQAQ---CGHRYCSFCLASILSSGP--QNCA 70 (141)
T ss_dssp GBCTTTCSBCS-----SEEECT---TSCEEEHHHHHHHGGGSC--EECH
T ss_pred cCCCCCChhhc-----CcEECC---CCCccCHHHHHHHHhcCC--CCCC
Confidence 47999988773 346654 999999999999965332 2465
No 83
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=70.95 E-value=2 Score=40.77 Aligned_cols=51 Identities=24% Similarity=0.637 Sum_probs=32.0
Q ss_pred CCceecCCcCCCCceecccCCCCceEcCCCcccccccCCccCCCCCchhhHHHhhhcccchhhhHHhhhcCCCCCCCCce
Q psy15975 42 RLLRWCPSPDCNNAIKVQHVEARPVVCKCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVT 121 (312)
Q Consensus 42 ~~~~~CP~~~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~H~p~~C~~~~~w~~~~~~~~~~~~~i~~~~k~CP~C~~~ 121 (312)
....-||- |-... ...+.-+|||.||..|-. .| +......||-|+.+
T Consensus 330 ~~~~~C~I--Cle~~------~~pv~lpCGH~FC~~Ci~------------~w-------------l~~~~~~CP~CR~~ 376 (389)
T 2y1n_A 330 STFQLCKI--CAEND------KDVKIEPCGHLMCTSCLT------------SW-------------QESEGQGCPFCRCE 376 (389)
T ss_dssp TSSSBCTT--TSSSB------CCEEEETTCCEECHHHHH------------HH-------------HHHTCSBCTTTCCB
T ss_pred CCCCCCCc--cCcCC------CCeEEeCCCChhhHHHHH------------HH-------------HhcCCCCCCCCCCc
Confidence 33346883 75443 123555699999998743 23 22244789999998
Q ss_pred eEec
Q psy15975 122 IEKD 125 (312)
Q Consensus 122 IeK~ 125 (312)
|...
T Consensus 377 i~~~ 380 (389)
T 2y1n_A 377 IKGT 380 (389)
T ss_dssp CCEE
T ss_pred cCCc
Confidence 8653
No 84
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=70.23 E-value=2.9 Score=31.23 Aligned_cols=54 Identities=26% Similarity=0.577 Sum_probs=38.0
Q ss_pred CCCCceecccCCCCceEcC-CCcccccccCCccCCCCCchhhHHHhhhcccchhhhHHhhhcCCCCCCCCceeEecCCCC
Q psy15975 51 DCNNAIKVQHVEARPVVCK-CGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEKDGGCN 129 (312)
Q Consensus 51 ~C~~~i~~~~~~~~~v~C~-C~~~fC~~C~~~~H~p~~C~~~~~w~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK~~GCn 129 (312)
-|+.-|-....+...|-|. |+.-.|..| -++.+ ....+.||.|++++.+..|+.
T Consensus 21 iCGD~VG~~~~Ge~FVAC~eC~FPvCrpC----------yEYEr---------------keG~q~CpqCktrYkr~kgsp 75 (93)
T 1weo_A 21 ICGDQIGLTVEGDLFVACNECGFPACRPC----------YEYER---------------REGTQNCPQCKTRYKRLRGSP 75 (93)
T ss_dssp SSCCBCCBCSSSSBCCSCSSSCCCCCHHH----------HHHHH---------------HTSCSSCTTTCCCCCCCTTCC
T ss_pred cccCccccCCCCCEEEeeeccCChhhHHH----------HHHHH---------------hccCccccccCCccccccCCC
Confidence 4777776665566788888 888888744 33321 245689999999998766654
No 85
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=69.92 E-value=0.78 Score=35.61 Aligned_cols=33 Identities=27% Similarity=0.673 Sum_probs=25.6
Q ss_pred CCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCC
Q psy15975 113 KECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPH 153 (312)
Q Consensus 113 k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h 153 (312)
-.||-|...+.. .++.. |||.||+.|...|-..
T Consensus 19 ~~C~IC~~~~~~-----p~~~~---CgH~fC~~Ci~~~~~~ 51 (118)
T 3hct_A 19 YECPICLMALRE-----AVQTP---CGHRFCKACIIKSIRD 51 (118)
T ss_dssp GBCTTTCSBCSS-----EEECT---TSCEEEHHHHHHHHHH
T ss_pred CCCCcCChhhcC-----eEECC---cCChhhHHHHHHHHhh
Confidence 489999887742 35544 9999999999999653
No 86
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=69.31 E-value=3.4 Score=29.46 Aligned_cols=30 Identities=23% Similarity=0.507 Sum_probs=23.7
Q ss_pred cCCCCCCCCceeEecCCCCceeecCCCCCcce
Q psy15975 111 NTKECPKCLVTIEKDGGCNHMVCKNQSCKAEF 142 (312)
Q Consensus 111 ~~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~F 142 (312)
..-.||.|+.+.+-+.+=..+.|.. ||..|
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~--cg~~Y 36 (70)
T 2js4_A 7 DILVCPVCKGRLEFQRAQAELVCNA--DRLAF 36 (70)
T ss_dssp CCCBCTTTCCBEEEETTTTEEEETT--TTEEE
T ss_pred hheECCCCCCcCEEeCCCCEEEcCC--CCcee
Confidence 3458999999999887767789987 87554
No 87
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=68.79 E-value=0.94 Score=34.67 Aligned_cols=38 Identities=24% Similarity=0.545 Sum_probs=23.8
Q ss_pred CCCcccccccCCccCCCCCchhhHHHhhhcccchhhhHHhhhcCCCCCCCCceeEecCC
Q psy15975 69 KCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEKDGG 127 (312)
Q Consensus 69 ~C~~~fC~~C~~~~H~p~~C~~~~~w~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK~~G 127 (312)
+|+|.||..|... |+.... ......||-|+..+....|
T Consensus 60 ~C~H~Fh~~Ci~~------------wl~~~~---------~~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 60 KCSHAFHLLCLLA------------MYCNGN---------KDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp SSCCEECHHHHHH------------HHHHTC---------CSSCCBCTTTCCBSSSCSS
T ss_pred CCCCcccHHHHHH------------HHHccc---------CCCCCcCCCCCCccCCCCC
Confidence 4999999988543 321100 0123589999998876544
No 88
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=68.66 E-value=0.87 Score=37.21 Aligned_cols=39 Identities=21% Similarity=0.383 Sum_probs=27.9
Q ss_pred CCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCCCCCCCCCC
Q psy15975 113 KECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCN 161 (312)
Q Consensus 113 k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h~~~~~~C~ 161 (312)
-.||-|...+. +.++- . |||.||..|...|-..+. ..|+
T Consensus 79 ~~C~IC~~~~~-----~pv~~-~--CgH~fC~~Ci~~~~~~~~--~~CP 117 (150)
T 1z6u_A 79 FMCVCCQELVY-----QPVTT-E--CFHNVCKDCLQRSFKAQV--FSCP 117 (150)
T ss_dssp TBCTTTSSBCS-----SEEEC-T--TSCEEEHHHHHHHHHTTC--CBCT
T ss_pred CEeecCChhhc-----CCEEc-C--CCCchhHHHHHHHHHhCC--CcCC
Confidence 57999987763 34553 3 999999999999876432 2455
No 89
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=68.62 E-value=3.2 Score=29.43 Aligned_cols=29 Identities=24% Similarity=0.533 Sum_probs=22.6
Q ss_pred CCCCCCCCceeEecCCCCceeecCCCCCcce
Q psy15975 112 TKECPKCLVTIEKDGGCNHMVCKNQSCKAEF 142 (312)
Q Consensus 112 ~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~F 142 (312)
.-.||.|+.+.+-+.+=..+.|.. ||..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~--cg~~Y 36 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKG--DRLAF 36 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETT--TTEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCC--CCcEe
Confidence 458999999998887667788886 76544
No 90
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.57 E-value=1.2 Score=32.26 Aligned_cols=30 Identities=20% Similarity=0.618 Sum_probs=21.1
Q ss_pred CCCCceeecCCCCCcceecccCCCCCCCCCCCCCCC
Q psy15975 126 GGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCN 161 (312)
Q Consensus 126 ~GCnhMtC~~~~C~~~FCw~C~~~w~~h~~~~~~C~ 161 (312)
+.+..+.-. |+|.|+..|+..|-.... .|+
T Consensus 39 ~~~~~~~~~---C~H~FH~~Ci~~Wl~~~~---~CP 68 (81)
T 2ecl_A 39 EDCVVVWGE---CNHSFHNCCMSLWVKQNN---RCP 68 (81)
T ss_dssp TTCCEEEET---TSCEEEHHHHHHHTTTCC---BCT
T ss_pred CceEEEeCC---CCCccChHHHHHHHHhCC---CCC
Confidence 344444444 999999999999976542 566
No 91
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=67.89 E-value=1.5 Score=31.65 Aligned_cols=30 Identities=33% Similarity=0.959 Sum_probs=22.1
Q ss_pred eEcCCCcc-cccccCCccCCCCCchhhHHHhhhcccchhhhHHhhhcCCCCCCCCceeEec
Q psy15975 66 VVCKCGHR-FCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEKD 125 (312)
Q Consensus 66 v~C~C~~~-fC~~C~~~~H~p~~C~~~~~w~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK~ 125 (312)
+.=||||. ||..|...+ +.||-|+.+|...
T Consensus 32 v~~pCgH~~~C~~C~~~~------------------------------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 32 TFCPCGHTVCCESCAAQL------------------------------QSCPVCRSRVEHV 62 (79)
T ss_dssp EEETTCBCCBCHHHHTTC------------------------------SBCTTTCCBCCEE
T ss_pred EEECCCCHHHHHHHHHhc------------------------------CcCCCCCchhhCe
Confidence 44469999 999886432 3899999988663
No 92
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=67.75 E-value=0.91 Score=34.97 Aligned_cols=33 Identities=21% Similarity=0.509 Sum_probs=25.8
Q ss_pred CCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCC
Q psy15975 113 KECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPH 153 (312)
Q Consensus 113 k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h 153 (312)
-.||-|...+. +.++-. |||.||+.|...|-..
T Consensus 24 ~~C~IC~~~~~-----~p~~~~---CgH~fC~~Ci~~~~~~ 56 (116)
T 1rmd_A 24 ISCQICEHILA-----DPVETS---CKHLFCRICILRCLKV 56 (116)
T ss_dssp TBCTTTCSBCS-----SEEECT---TSCEEEHHHHHHHHHH
T ss_pred CCCCCCCcHhc-----CcEEcC---CCCcccHHHHHHHHhH
Confidence 57999988874 345533 9999999999999654
No 93
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=66.06 E-value=3.7 Score=29.12 Aligned_cols=30 Identities=13% Similarity=0.409 Sum_probs=22.9
Q ss_pred cCCCCCCCCceeEecCCCCceeecCCCCCcce
Q psy15975 111 NTKECPKCLVTIEKDGGCNHMVCKNQSCKAEF 142 (312)
Q Consensus 111 ~~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~F 142 (312)
..-.||.|+.+.+-..+=..+.|.. ||..|
T Consensus 7 eiL~CP~ck~~L~~~~~~~~LiC~~--cg~~Y 36 (69)
T 2pk7_A 7 DILACPICKGPLKLSADKTELISKG--AGLAY 36 (69)
T ss_dssp GTCCCTTTCCCCEECTTSSEEEETT--TTEEE
T ss_pred hheeCCCCCCcCeEeCCCCEEEcCC--CCcEe
Confidence 3458999999998876666788987 77544
No 94
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=64.19 E-value=4.8 Score=27.29 Aligned_cols=29 Identities=24% Similarity=0.789 Sum_probs=22.2
Q ss_pred CCCCCCCCceeEecCCCCceeecCCCCCcce
Q psy15975 112 TKECPKCLVTIEKDGGCNHMVCKNQSCKAEF 142 (312)
Q Consensus 112 ~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~F 142 (312)
.-.||.|+.+.+-.. ..+.|.++.|+..|
T Consensus 10 iL~CP~c~~~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 10 ILACPACHAPLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp SCCCSSSCSCEEEET--TEEEECSSSCCCEE
T ss_pred heeCCCCCCcceecC--CEEEcCCcCCCcEE
Confidence 458999999988877 78899832387654
No 95
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=63.58 E-value=1.5 Score=34.53 Aligned_cols=32 Identities=19% Similarity=0.518 Sum_probs=0.0
Q ss_pred cCCCCceeecCCCCCcceecccCCCCCCCCCCCCCCCC
Q psy15975 125 DGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCNR 162 (312)
Q Consensus 125 ~~GCnhMtC~~~~C~~~FCw~C~~~w~~h~~~~~~C~~ 162 (312)
.+.|.-+.-. |+|.|+..|...|-... ..|+.
T Consensus 74 ~~~~~v~~~~---C~H~FH~~CI~~Wl~~~---~~CP~ 105 (117)
T 4a0k_B 74 SEECTVAWGV---CNHAFHFHCISRWLKTR---QVCPL 105 (117)
T ss_dssp --------------------------------------
T ss_pred ccccccccCC---cCceEcHHHHHHHHHcC---CcCCC
Confidence 3445555555 99999999999997643 25663
No 96
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=63.42 E-value=1.1 Score=34.26 Aligned_cols=37 Identities=19% Similarity=0.411 Sum_probs=24.0
Q ss_pred CCCCCCCceeEecCCC------------CceeecCCCCCcceecccCCCCC
Q psy15975 113 KECPKCLVTIEKDGGC------------NHMVCKNQSCKAEFCWVCLGPWE 151 (312)
Q Consensus 113 k~CP~C~~~IeK~~GC------------nhMtC~~~~C~~~FCw~C~~~w~ 151 (312)
-.||-|...++...+. ..+.-.. |+|.||..|+..|-
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--C~H~Fh~~Ci~~wl 74 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK--CSHAFHLLCLLAMY 74 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS--SCCEECHHHHHHHH
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCC--CCCcccHHHHHHHH
Confidence 3688887776543321 1112333 99999999999996
No 97
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.25 E-value=1.7 Score=30.74 Aligned_cols=13 Identities=31% Similarity=0.820 Sum_probs=10.8
Q ss_pred CCCCCCCceeEec
Q psy15975 113 KECPKCLVTIEKD 125 (312)
Q Consensus 113 k~CP~C~~~IeK~ 125 (312)
+.||-|+.+|...
T Consensus 57 ~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 57 DKCPMCYTVITFK 69 (75)
T ss_dssp SBCTTTCCBCCCC
T ss_pred CCCccCCceecCc
Confidence 6899999998653
No 98
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=63.23 E-value=2.9 Score=30.75 Aligned_cols=29 Identities=28% Similarity=0.554 Sum_probs=24.4
Q ss_pred CCCCCCceeEecCCCCceeecCCCCC--cceecccCCCCCC
Q psy15975 114 ECPKCLVTIEKDGGCNHMVCKNQSCK--AEFCWVCLGPWEP 152 (312)
Q Consensus 114 ~CP~C~~~IeK~~GCnhMtC~~~~C~--~~FCw~C~~~w~~ 152 (312)
.||.|+.++|+ |.. || ..||-.|++-.+.
T Consensus 33 fCPeCgq~Le~--------lkA--CGA~~yFC~~C~~LiSk 63 (81)
T 2jrp_A 33 LCPDCRQPLQV--------LKA--CGAVDYFCQNGHGLISK 63 (81)
T ss_dssp ECSSSCSCCCE--------EEE--TTEEEECCTTTTCCCCT
T ss_pred cCcchhhHHHH--------HHh--cCCcCeeeccCCCEeec
Confidence 89999999999 665 77 6899999887654
No 99
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=60.73 E-value=5.5 Score=28.09 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=23.4
Q ss_pred cCCCCCCCCceeEecCCCCceeecCCCCCcce
Q psy15975 111 NTKECPKCLVTIEKDGGCNHMVCKNQSCKAEF 142 (312)
Q Consensus 111 ~~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~F 142 (312)
..-.||.|+.+.+-+..=+.+.|.. |+..|
T Consensus 9 eiL~CP~ck~~L~~~~~~g~LvC~~--c~~~Y 38 (67)
T 2jny_A 9 EVLACPKDKGPLRYLESEQLLVNER--LNLAY 38 (67)
T ss_dssp CCCBCTTTCCBCEEETTTTEEEETT--TTEEE
T ss_pred HHhCCCCCCCcCeEeCCCCEEEcCC--CCccc
Confidence 3458999999998876666788987 87554
No 100
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=59.35 E-value=2.9 Score=33.61 Aligned_cols=40 Identities=30% Similarity=0.796 Sum_probs=26.2
Q ss_pred eecCCcCCCCceecccCCCCceEcCCCcccccccCCccC--CCCCchhhH
Q psy15975 45 RWCPSPDCNNAIKVQHVEARPVVCKCGHRFCFACGENWH--DPVRCSLLR 92 (312)
Q Consensus 45 ~~CP~~~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~H--~p~~C~~~~ 92 (312)
.-|| -|..++.. .|+.+||+.||..|-..|- .+.+|+.-+
T Consensus 32 ~~C~--IC~~~~~~------pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr 73 (141)
T 3knv_A 32 YLCS--ACRNVLRR------PFQAQCGHRYCSFCLASILSSGPQNCAACV 73 (141)
T ss_dssp GBCT--TTCSBCSS------EEECTTSCEEEHHHHHHHGGGSCEECHHHH
T ss_pred cCCC--CCChhhcC------cEECCCCCccCHHHHHHHHhcCCCCCCCCC
Confidence 4687 48766532 2667899999999987652 223566544
No 101
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=59.24 E-value=5.7 Score=30.77 Aligned_cols=30 Identities=20% Similarity=0.571 Sum_probs=21.3
Q ss_pred CceecCCcCCCCceecccC---CCCceEcC-CCccc
Q psy15975 43 LLRWCPSPDCNNAIKVQHV---EARPVVCK-CGHRF 74 (312)
Q Consensus 43 ~~~~CP~~~C~~~i~~~~~---~~~~v~C~-C~~~f 74 (312)
.+.+|| .|++.+.+... ....+.|+ |++.+
T Consensus 3 ~m~FCp--~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 3 NFQYCI--ECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCCS--SSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred cceeCc--CCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 367999 69999877643 23467787 77755
No 102
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=59.04 E-value=6.4 Score=30.51 Aligned_cols=29 Identities=17% Similarity=0.407 Sum_probs=23.1
Q ss_pred CCCCCCCCceeEec----CCCCceeecCCCCCcce
Q psy15975 112 TKECPKCLVTIEKD----GGCNHMVCKNQSCKAEF 142 (312)
Q Consensus 112 ~k~CP~C~~~IeK~----~GCnhMtC~~~~C~~~F 142 (312)
.+-||.|+..+.-. .|.+.+.|.+ |++.+
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~--C~y~~ 36 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRN--CDYSE 36 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSS--SCCEE
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCC--CCCeE
Confidence 47899998876543 3688999998 99876
No 103
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=58.05 E-value=8.1 Score=27.14 Aligned_cols=31 Identities=26% Similarity=0.556 Sum_probs=22.7
Q ss_pred eecCCcCCCCceecccCCCCceEcC-CCcccccc
Q psy15975 45 RWCPSPDCNNAIKVQHVEARPVVCK-CGHRFCFA 77 (312)
Q Consensus 45 ~~CP~~~C~~~i~~~~~~~~~v~C~-C~~~fC~~ 77 (312)
+.|| +|.+.-.+-+-....|.|. ||...|--
T Consensus 8 VKCp--~C~niq~VFShA~tvV~C~~Cg~~L~~P 39 (66)
T 1qxf_A 8 VKCP--DCEHEQVIFDHPSTIVKCIICGRTVAEP 39 (66)
T ss_dssp EECT--TTCCEEEEESSCSSCEECSSSCCEEEEC
T ss_pred EECC--CCCCceEEEecCceEEEcccCCCEEeec
Confidence 5788 7998644333356789999 99999853
No 104
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=57.41 E-value=4.5 Score=37.69 Aligned_cols=29 Identities=34% Similarity=0.859 Sum_probs=22.6
Q ss_pred eEcCCCcc-cccccCCccCCCCCchhhHHHhhhcccchhhhHHhhhcCCCCCCCCceeEe
Q psy15975 66 VVCKCGHR-FCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEK 124 (312)
Q Consensus 66 v~C~C~~~-fC~~C~~~~H~p~~C~~~~~w~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK 124 (312)
+.=+|||. ||..|...+ ..||-|+.+|..
T Consensus 309 v~lpCgH~~fC~~C~~~~------------------------------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 309 VFIPCGHLVVCQECAPSL------------------------------RKCPICRGIIKG 338 (345)
T ss_dssp EEETTCCEEECTTTGGGC------------------------------SBCTTTCCBCCE
T ss_pred EEcCCCChhHhHHHHhcC------------------------------CcCCCCCCCccC
Confidence 44479999 999996532 589999999875
No 105
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=54.63 E-value=5.9 Score=31.75 Aligned_cols=31 Identities=13% Similarity=0.275 Sum_probs=23.7
Q ss_pred hcCCCCCCCCceeEec----CCCCceeecCCCCCcce
Q psy15975 110 ANTKECPKCLVTIEKD----GGCNHMVCKNQSCKAEF 142 (312)
Q Consensus 110 ~~~k~CP~C~~~IeK~----~GCnhMtC~~~~C~~~F 142 (312)
...+-||.|+...--. .|.+.+.|++ |+|.+
T Consensus 22 ~~~~FCPeCgNmL~pked~~~~~l~~~Crt--CgY~~ 56 (133)
T 3qt1_I 22 TTFRFCRDCNNMLYPREDKENNRLLFECRT--CSYVE 56 (133)
T ss_dssp CCCCBCTTTCCBCBCCBCTTTCCBCCBCSS--SCCBC
T ss_pred cCCeeCCCCCCEeeECccCCCceeEEECCC--CCCcE
Confidence 3568999998876332 2688899998 99865
No 106
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.15 E-value=2.8 Score=29.26 Aligned_cols=12 Identities=25% Similarity=0.902 Sum_probs=10.4
Q ss_pred CCCCCCCceeEe
Q psy15975 113 KECPKCLVTIEK 124 (312)
Q Consensus 113 k~CP~C~~~IeK 124 (312)
+.||-|+.+|..
T Consensus 47 ~~CP~CR~~i~~ 58 (68)
T 2ea5_A 47 QQCPMCRQFVQE 58 (68)
T ss_dssp SSCTTTCCCCCC
T ss_pred CCCCCCCcchhc
Confidence 689999999865
No 107
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=53.39 E-value=3.3 Score=28.29 Aligned_cols=12 Identities=33% Similarity=0.778 Sum_probs=10.4
Q ss_pred CCCCCCCceeEe
Q psy15975 113 KECPKCLVTIEK 124 (312)
Q Consensus 113 k~CP~C~~~IeK 124 (312)
+.||-|+.+|..
T Consensus 45 ~~CPiCR~~i~~ 56 (63)
T 2vje_B 45 ASCPICKKEIQL 56 (63)
T ss_dssp CBCTTTCCBCCE
T ss_pred CcCCCcCchhhc
Confidence 689999999864
No 108
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=52.60 E-value=11 Score=26.19 Aligned_cols=30 Identities=33% Similarity=0.506 Sum_probs=21.9
Q ss_pred eecCCcCCCCceecccCCCCceEcC-CCccccc
Q psy15975 45 RWCPSPDCNNAIKVQHVEARPVVCK-CGHRFCF 76 (312)
Q Consensus 45 ~~CP~~~C~~~i~~~~~~~~~v~C~-C~~~fC~ 76 (312)
+.|| +|.+.-.+-+-....|.|. |+...|-
T Consensus 16 VkCp--~C~~~q~VFSha~t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 16 VKCI--DCGNEQIVFSHPATKVRCLICGATLVE 46 (63)
T ss_dssp EECS--SSCCEEEEESSCSSCEECSSSCCEEEE
T ss_pred EECC--CCCCeeEEEecCCeEEEccCcCCEEec
Confidence 5688 7998643333356789999 9999885
No 109
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=51.15 E-value=5.9 Score=31.16 Aligned_cols=30 Identities=27% Similarity=0.585 Sum_probs=21.5
Q ss_pred CceecCCcCCCCceecccC---CCCceEcC-CCccc
Q psy15975 43 LLRWCPSPDCNNAIKVQHV---EARPVVCK-CGHRF 74 (312)
Q Consensus 43 ~~~~CP~~~C~~~i~~~~~---~~~~v~C~-C~~~f 74 (312)
.+.+|| .|++.+.+... ....+.|+ |++..
T Consensus 3 ~~~FCp--~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 3 TFRFCR--DCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCCBCS--SSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCCccc--ccCccCcccccCcCCCCEEECCcCCCee
Confidence 467999 69999876532 23568888 88765
No 110
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=51.09 E-value=8.8 Score=33.86 Aligned_cols=23 Identities=22% Similarity=0.580 Sum_probs=16.7
Q ss_pred hhhHHhhhcCCCCCCCCc-eeEecC
Q psy15975 103 ETSNWIAANTKECPKCLV-TIEKDG 126 (312)
Q Consensus 103 ~~~~~i~~~~k~CP~C~~-~IeK~~ 126 (312)
.|..|+..|. -||.|+. ++.+-+
T Consensus 26 LTE~Wv~~n~-yCPnCG~~~l~~f~ 49 (257)
T 4esj_A 26 LTEDWVYRQS-YCPNCGNNPLNHFE 49 (257)
T ss_dssp HHHHHHHHHC-CCTTTCCSSCEEC-
T ss_pred hhHHHHHHCC-cCCCCCChhhhhcc
Confidence 4678988774 9999999 565533
No 111
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=50.18 E-value=7.5 Score=23.84 Aligned_cols=26 Identities=31% Similarity=0.612 Sum_probs=20.3
Q ss_pred CCCCCCce---eEecCCCCceeecCCCCCcc
Q psy15975 114 ECPKCLVT---IEKDGGCNHMVCKNQSCKAE 141 (312)
Q Consensus 114 ~CP~C~~~---IeK~~GCnhMtC~~~~C~~~ 141 (312)
.||.|+.| +.+..+=..+.|.. ||+.
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~a--CG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMA--CGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEET--TTEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhc--CCCc
Confidence 58999876 66667778899998 9864
No 112
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=50.08 E-value=7.9 Score=30.40 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=22.7
Q ss_pred CCCCCCCCceeEec----CCCCceeecCCCCCcce
Q psy15975 112 TKECPKCLVTIEKD----GGCNHMVCKNQSCKAEF 142 (312)
Q Consensus 112 ~k~CP~C~~~IeK~----~GCnhMtC~~~~C~~~F 142 (312)
.+-||.|+..+.-. .+-+.+.|.. |++.+
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~--C~y~~ 36 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRT--CSYVE 36 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSS--SSCEE
T ss_pred CCcccccCccCcccccCcCCCCEEECCc--CCCee
Confidence 47899998876533 6678899998 99866
No 113
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=49.98 E-value=8.4 Score=32.21 Aligned_cols=24 Identities=21% Similarity=0.751 Sum_probs=20.9
Q ss_pred CCCCCCCceeEecCCCCceeecCCCCCc
Q psy15975 113 KECPKCLVTIEKDGGCNHMVCKNQSCKA 140 (312)
Q Consensus 113 k~CP~C~~~IeK~~GCnhMtC~~~~C~~ 140 (312)
-.||.|+.+..+.+ ++|.|+. ||.
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp~--~g~ 164 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCPE--CGR 164 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECSS--SCC
T ss_pred ecccccCCceEECC--CEEECCC--CCC
Confidence 38999999998876 9999998 884
No 114
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=49.90 E-value=12 Score=27.33 Aligned_cols=34 Identities=21% Similarity=0.592 Sum_probs=23.9
Q ss_pred eecCCcCCCCceecccCCCCceEcC-CCcccccccCC
Q psy15975 45 RWCPSPDCNNAIKVQHVEARPVVCK-CGHRFCFACGE 80 (312)
Q Consensus 45 ~~CP~~~C~~~i~~~~~~~~~v~C~-C~~~fC~~C~~ 80 (312)
+-|| +|.+.-.+-+-....|.|. ||...|--=++
T Consensus 33 VkCp--~C~n~q~VFShA~t~V~C~~Cg~~L~~PTGG 67 (81)
T 2xzm_6 33 VKCA--QCQNIQMIFSNAQSTIICEKCSAILCKPTGG 67 (81)
T ss_dssp EECS--SSCCEEEEETTCSSCEECSSSCCEEEEECSS
T ss_pred eECC--CCCCeeEEEecCccEEEccCCCCEEeecCCC
Confidence 4688 7998644433356789999 99999854333
No 115
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=49.33 E-value=2.7 Score=32.26 Aligned_cols=30 Identities=20% Similarity=0.572 Sum_probs=20.6
Q ss_pred CCCCceeecCCCCCcceecccCCCCCCCCCCCCCCC
Q psy15975 126 GGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCN 161 (312)
Q Consensus 126 ~GCnhMtC~~~~C~~~FCw~C~~~w~~h~~~~~~C~ 161 (312)
++|.-+.-. |+|.|+..|...|-... ..|+
T Consensus 64 ~~~~~~~~~---C~H~FH~~Ci~~Wl~~~---~~CP 93 (106)
T 3dpl_R 64 EECTVAWGV---CNHAFHFHCISRWLKTR---QVCP 93 (106)
T ss_dssp -CCCEEEET---TSCEEEHHHHHHHHTTC---SBCS
T ss_pred ccceEeecc---cCcEECHHHHHHHHHcC---CcCc
Confidence 445555554 99999999999996543 2565
No 116
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=48.86 E-value=7.3 Score=28.01 Aligned_cols=30 Identities=23% Similarity=0.568 Sum_probs=23.9
Q ss_pred CCCCCCCCceeEecCCCCceeecCCCCCcceecccCC
Q psy15975 112 TKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLG 148 (312)
Q Consensus 112 ~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~ 148 (312)
..+|..|+..+...+ +.|. |+..||-.=.-
T Consensus 25 ~nRC~~CrKkvgL~g----f~Cr---Cg~~FCs~HRy 54 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTG----FDCR---CGNLFCGLHRY 54 (74)
T ss_dssp TTBCSSSCCBCGGGC----EECT---TSCEECSSSCS
T ss_pred CCcChhhCCcccccC----eecC---CCCEechhcCC
Confidence 458999999987763 8999 99999975443
No 117
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=48.14 E-value=1.2 Score=30.83 Aligned_cols=12 Identities=42% Similarity=0.897 Sum_probs=10.2
Q ss_pred CCCCCCCceeEe
Q psy15975 113 KECPKCLVTIEK 124 (312)
Q Consensus 113 k~CP~C~~~IeK 124 (312)
+.||-|+.+|+.
T Consensus 46 ~~CPiCR~~i~~ 57 (64)
T 2vje_A 46 KPCPVCRQPIQM 57 (64)
T ss_dssp CCCTTTCCCCCE
T ss_pred CcCCCcCcchhc
Confidence 689999999864
No 118
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=47.72 E-value=7.9 Score=27.53 Aligned_cols=25 Identities=20% Similarity=0.581 Sum_probs=19.0
Q ss_pred CCCCCCCceeEecCCCCceeecCCCCCc
Q psy15975 113 KECPKCLVTIEKDGGCNHMVCKNQSCKA 140 (312)
Q Consensus 113 k~CP~C~~~IeK~~GCnhMtC~~~~C~~ 140 (312)
-.|+.|+..++...+ +.+.|+. ||+
T Consensus 29 Y~C~~CG~~~e~~~~-d~irCp~--CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLSRT-DAVRCKD--CGH 53 (70)
T ss_dssp EECSSSCCEECCCTT-STTCCSS--SCC
T ss_pred EECCCCCCcceeCCC-CCccCCC--CCc
Confidence 379999999877644 5678887 875
No 119
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=46.09 E-value=12 Score=25.32 Aligned_cols=26 Identities=23% Similarity=0.558 Sum_probs=19.1
Q ss_pred CCCCCCCCc-eeEecCCCCceeecCCCCC
Q psy15975 112 TKECPKCLV-TIEKDGGCNHMVCKNQSCK 139 (312)
Q Consensus 112 ~k~CP~C~~-~IeK~~GCnhMtC~~~~C~ 139 (312)
...||.|+. .|..+..=.-+.|.. ||
T Consensus 11 ~~~Cp~C~~~~lv~D~~~ge~vC~~--CG 37 (58)
T 1dl6_A 11 RVTCPNHPDAILVEDYRAGDMICPE--CG 37 (58)
T ss_dssp CCSBTTBSSSCCEECSSSCCEECTT--TC
T ss_pred cccCcCCCCCceeEeCCCCeEEeCC--CC
Confidence 458999976 676665555688887 76
No 120
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=45.65 E-value=9.5 Score=31.13 Aligned_cols=33 Identities=18% Similarity=0.538 Sum_probs=22.7
Q ss_pred ceecCCcCCCCceecccCCCCceEcC-CCcccccc
Q psy15975 44 LRWCPSPDCNNAIKVQHVEARPVVCK-CGHRFCFA 77 (312)
Q Consensus 44 ~~~CP~~~C~~~i~~~~~~~~~v~C~-C~~~fC~~ 77 (312)
.+.||.+.|+..+.... ......|. ||..++++
T Consensus 118 ~~~c~~~~cg~g~fma~-h~~r~~cgkc~~t~~~~ 151 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLAN-HKDRLYCGKCHSVYKVN 151 (152)
T ss_dssp SCBCCSTTSCSSSBEEE-CSSCEEESSSSSCCEEC
T ss_pred cCcCCCccCCCceEecc-cCCCcccCCCceEEEec
Confidence 46899999987443221 23468899 99888864
No 121
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=45.37 E-value=4.2 Score=38.59 Aligned_cols=33 Identities=21% Similarity=0.601 Sum_probs=24.5
Q ss_pred CCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCC
Q psy15975 112 TKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEP 152 (312)
Q Consensus 112 ~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~ 152 (312)
...||-|..... +.+. .. |||.||+.|...|..
T Consensus 332 ~~~C~ICle~~~-----~pv~-lp--CGH~FC~~Ci~~wl~ 364 (389)
T 2y1n_A 332 FQLCKICAENDK-----DVKI-EP--CGHLMCTSCLTSWQE 364 (389)
T ss_dssp SSBCTTTSSSBC-----CEEE-ET--TCCEECHHHHHHHHH
T ss_pred CCCCCccCcCCC-----CeEE-eC--CCChhhHHHHHHHHh
Confidence 368999976652 2333 33 999999999999964
No 122
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=45.35 E-value=9.1 Score=26.74 Aligned_cols=32 Identities=22% Similarity=0.621 Sum_probs=24.3
Q ss_pred cCCCCCCCCceeEecCCCCceeecCCCCCcceecccCCC
Q psy15975 111 NTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGP 149 (312)
Q Consensus 111 ~~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~ 149 (312)
...+|..|+..+... -+.|. |+..||-.=.-+
T Consensus 14 ~~~rC~~C~kkvgl~----~f~Cr---Cg~~FC~~HRy~ 45 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLT----GFMCR---CGTTFCGSHRYP 45 (64)
T ss_dssp SCCCCTTTCCCCCTT----CEECS---SSCEECTTTCST
T ss_pred cCCcChhhCCccCcc----CEEee---cCCEeccccCCc
Confidence 457899999887655 48996 999999765443
No 123
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=45.08 E-value=9.9 Score=28.07 Aligned_cols=30 Identities=23% Similarity=0.613 Sum_probs=21.8
Q ss_pred cCCCCCCCCce------eEecCCCCceeecCCCCCcce
Q psy15975 111 NTKECPKCLVT------IEKDGGCNHMVCKNQSCKAEF 142 (312)
Q Consensus 111 ~~k~CP~C~~~------IeK~~GCnhMtC~~~~C~~~F 142 (312)
.+=.||.|+.. |.|..|=-+++|.. ||..|
T Consensus 22 t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~--Cg~~~ 57 (85)
T 1wii_A 22 TQFTCPFCNHEKSCDVKMDRARNTGVISCTV--CLEEF 57 (85)
T ss_dssp SCCCCTTTCCSSCEEEEEETTTTEEEEEESS--SCCEE
T ss_pred CeEcCCCCCCCCeEEEEEEccCCEEEEEccc--CCCeE
Confidence 34589999765 44567777899998 88665
No 124
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=44.54 E-value=15 Score=28.50 Aligned_cols=21 Identities=33% Similarity=0.737 Sum_probs=14.3
Q ss_pred CCcccccccCCc-cCCCCCchh
Q psy15975 70 CGHRFCFACGEN-WHDPVRCSL 90 (312)
Q Consensus 70 C~~~fC~~C~~~-~H~p~~C~~ 90 (312)
|....|++|+.. -|....|..
T Consensus 20 Cp~~~C~~Cg~~~gH~~~~C~~ 41 (124)
T 2lli_A 20 CPHIICSYCGATDDHYSRHCPK 41 (124)
T ss_dssp TTSCCCTTTCCTTTCCTTTGGG
T ss_pred CcCCcCcCCCCcCCccCcccCC
Confidence 456777777776 677766754
No 125
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=44.35 E-value=12 Score=29.94 Aligned_cols=30 Identities=27% Similarity=0.753 Sum_probs=22.5
Q ss_pred hcCCCCCCCCceeEecCCCCceeecCCCCCcce
Q psy15975 110 ANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEF 142 (312)
Q Consensus 110 ~~~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~F 142 (312)
.+.-+||+|....-=.+|= .+.|+- |+++|
T Consensus 25 ~~lP~CP~C~seytYeDg~-l~vCPe--C~hEW 54 (138)
T 2akl_A 25 STLPPCPQCNSEYTYEDGA-LLVCPE--CAHEW 54 (138)
T ss_dssp CCSCCCTTTCCCCCEECSS-SEEETT--TTEEE
T ss_pred ccCCCCCCCCCcceEecCC-eEECCc--ccccc
Confidence 3457999999888777774 478886 77664
No 126
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=44.11 E-value=5.4 Score=30.45 Aligned_cols=37 Identities=32% Similarity=0.797 Sum_probs=26.8
Q ss_pred CCCCCCceeEecC---CCCceeecCCCCC-------cceecccCCCCCC
Q psy15975 114 ECPKCLVTIEKDG---GCNHMVCKNQSCK-------AEFCWVCLGPWEP 152 (312)
Q Consensus 114 ~CP~C~~~IeK~~---GCnhMtC~~~~C~-------~~FCw~C~~~w~~ 152 (312)
-||+|..||---| -|+|+.|.. |- ...|-+|..+...
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCyd--Ca~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYD--CAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHH--HHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHH--HHHHHHhccCCCCcCcCCeeee
Confidence 5999999985433 388888876 76 3478888887643
No 127
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=42.93 E-value=16 Score=26.44 Aligned_cols=42 Identities=21% Similarity=0.586 Sum_probs=28.2
Q ss_pred hHHhhh-cCCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCC
Q psy15975 105 SNWIAA-NTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPW 150 (312)
Q Consensus 105 ~~~i~~-~~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w 150 (312)
..|+.. ....|+.|+...- -.--.-.|.. ||.-||..|....
T Consensus 11 ~~W~~d~~~~~C~~C~~~Fs--~~~RrHHCR~--CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 11 HAWLKDDEATHCRQCEKEFS--ISRRKHHCRN--CGHIFCNTCSSNE 53 (82)
T ss_dssp ----CCCCCCBCTTTCCBCB--TTBCCEECTT--TCCEECSGGGCEE
T ss_pred CccccCccCCcccCcCCccc--CccccccCCC--CCCEEChHHhCCe
Confidence 457765 4678999998763 2233457888 9999999998754
No 128
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=42.49 E-value=30 Score=29.01 Aligned_cols=14 Identities=7% Similarity=-0.071 Sum_probs=10.2
Q ss_pred eEcCCCcccccccC
Q psy15975 66 VVCKCGHRFCFACG 79 (312)
Q Consensus 66 v~C~C~~~fC~~C~ 79 (312)
|+-+||+.||..|-
T Consensus 120 V~~~~Ghtfer~~I 133 (179)
T 2f42_A 120 CITPSGITYDRKDI 133 (179)
T ss_dssp EECTTSCEEEHHHH
T ss_pred eECCCCCEECHHHH
Confidence 44479999997663
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=42.28 E-value=4.9 Score=35.15 Aligned_cols=33 Identities=0% Similarity=-0.178 Sum_probs=24.0
Q ss_pred CCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCC
Q psy15975 113 KECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPH 153 (312)
Q Consensus 113 k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h 153 (312)
-.||-|.... -+.++=+ |||.||..|...|-.+
T Consensus 209 ~~c~i~~~~~-----~dPv~~~---~gh~f~~~~i~~~~~~ 241 (281)
T 2c2l_A 209 LCGKISFELM-----REPCITP---SGITYDRKDIEEHLQR 241 (281)
T ss_dssp TBCTTTCSBC-----SSEEECS---SCCEEETTHHHHHHHH
T ss_pred cCCcCcCCHh-----cCCeECC---CCCEECHHHHHHHHHH
Confidence 3688887665 3455544 9999999999988654
No 130
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=42.04 E-value=15 Score=26.88 Aligned_cols=35 Identities=29% Similarity=0.585 Sum_probs=23.8
Q ss_pred ceecCCcCCCCceecccCCCCceEcC-CCcccccccCC
Q psy15975 44 LRWCPSPDCNNAIKVQHVEARPVVCK-CGHRFCFACGE 80 (312)
Q Consensus 44 ~~~CP~~~C~~~i~~~~~~~~~v~C~-C~~~fC~~C~~ 80 (312)
-+-|| +|.+.-.+-+-....|.|. ||...|--=++
T Consensus 34 ~VkCp--~C~~~q~VFSha~t~V~C~~Cg~~L~~PTGG 69 (82)
T 3u5c_b 34 DVKCP--GCLNITTVFSHAQTAVTCESCSTILCTPTGG 69 (82)
T ss_dssp EEECT--TSCSCEEEESBCSSCCCCSSSCCCCEECCSS
T ss_pred EEECC--CCCCeeEEEecCCeEEEccccCCEEeccCCC
Confidence 35688 7998644333346789999 99998864433
No 131
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=40.96 E-value=16 Score=28.79 Aligned_cols=42 Identities=19% Similarity=0.532 Sum_probs=30.7
Q ss_pred hHHhhh-cCCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCC
Q psy15975 105 SNWIAA-NTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPW 150 (312)
Q Consensus 105 ~~~i~~-~~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w 150 (312)
..|+.. ....|+.|+.+.-- .--.-.|.. ||.-||..|....
T Consensus 61 ~~W~~d~~~~~C~~C~~~Fs~--~~RrHHCR~--CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 61 RKWAEDNEVQNCMACGKGFSV--TVRRHHCRQ--CGNIFCAECSAKN 103 (125)
T ss_dssp CCCCCGGGCCBCTTTCCBCCS--SSCCEECTT--TCCEECGGGSCEE
T ss_pred CccccCCCCCCCcCcCCcccc--ccccccCCC--CCeEEChHHhCCc
Confidence 457654 46789999987632 233467988 9999999998754
No 132
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.94 E-value=16 Score=26.40 Aligned_cols=41 Identities=27% Similarity=0.502 Sum_probs=29.5
Q ss_pred hHHhhh-cCCCCCCCCceeEecCCCCceeecCCCCCcceecccCCC
Q psy15975 105 SNWIAA-NTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGP 149 (312)
Q Consensus 105 ~~~i~~-~~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~ 149 (312)
..|+.. ....|+.|+...-. -=-.=.|.. ||.-||..|...
T Consensus 6 ~~W~pd~~~~~C~~C~~~F~~--~~RrHHCR~--CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 6 SGRYPTNNFGNCTGCSATFSV--LKKRRSCSN--CGNSFCSRCCSF 47 (84)
T ss_dssp CCSCSCCCCSSCSSSCCCCCS--SSCCEECSS--SCCEECTTTSCE
T ss_pred CccccCCCCCcCcCcCCcccc--chhhhhhcC--CCcEEChhhcCC
Confidence 456654 46789999988622 223457888 999999999764
No 133
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=40.56 E-value=2.3e+02 Score=26.46 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy15975 180 AALQRYLFYCNRYMNHMQSLKFEHKLYASVKEK 212 (312)
Q Consensus 180 ~~l~ry~~y~~r~~~h~~s~~~e~~l~~~~~~~ 212 (312)
..|...++++.+ +|..+..+-..+.+.++.+
T Consensus 70 e~L~~~L~~~s~--s~~~~~~y~~~~~~~lk~~ 100 (390)
T 1deq_A 70 NKLRDSLFNYQK--NSKDSNTLTKNIVELMRGD 100 (390)
T ss_pred HHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHH
Confidence 445555555543 3444444444343444333
No 134
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=40.07 E-value=11 Score=26.29 Aligned_cols=32 Identities=25% Similarity=0.535 Sum_probs=23.5
Q ss_pred cCCCCCCCCceeEecCCCCceeecCCCCCcceecccCCC
Q psy15975 111 NTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGP 149 (312)
Q Consensus 111 ~~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~ 149 (312)
....|..|+..+... -+.|. |+..||-.=.-+
T Consensus 14 ~~~rC~~C~kkvgl~----~f~Cr---Cg~~FC~~HR~~ 45 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVM----GFKCK---CGSTFCGSHRYP 45 (64)
T ss_dssp CSCSCTTTCCCCTTS----CEECT---TSCEECSSSCSS
T ss_pred cCCcChhhCCccccc----CeEee---cCCEecccCCCc
Confidence 346899999887544 48995 999999765443
No 135
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.70 E-value=10 Score=26.42 Aligned_cols=31 Identities=19% Similarity=0.618 Sum_probs=23.7
Q ss_pred ceecCCcCCCCceecccCCCCceEcC-CCcccccccCC
Q psy15975 44 LRWCPSPDCNNAIKVQHVEARPVVCK-CGHRFCFACGE 80 (312)
Q Consensus 44 ~~~CP~~~C~~~i~~~~~~~~~v~C~-C~~~fC~~C~~ 80 (312)
...|+.++|.... ...+.|. |+..||..-+.
T Consensus 12 ~~~Cs~~~Ck~~~------ll~f~C~~C~~~FC~~HR~ 43 (63)
T 1x4v_A 12 TNKCERAGCRQRE------MMKLTCERCSRNFCIKHRH 43 (63)
T ss_dssp CCCCCSTTCCCCC------SSCCBCSSSCCBCCHHHHS
T ss_pred CCCCCccCCCCCC------ccceECCCCCcccCcccCC
Confidence 3589999998762 2347999 99999987654
No 136
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=38.61 E-value=15 Score=29.97 Aligned_cols=32 Identities=16% Similarity=0.434 Sum_probs=23.2
Q ss_pred cCCCCCC--CCceeEecCCCCceeecCCCCCcceec
Q psy15975 111 NTKECPK--CLVTIEKDGGCNHMVCKNQSCKAEFCW 144 (312)
Q Consensus 111 ~~k~CP~--C~~~IeK~~GCnhMtC~~~~C~~~FCw 144 (312)
.-+.||+ |+..+.-..==+...|.+ |++-+++
T Consensus 117 ~~~~c~~~~cg~g~fma~h~~r~~cgk--c~~t~~~ 150 (152)
T 3u5c_f 117 LRRECSNPTCGAGVFLANHKDRLYCGK--CHSVYKV 150 (152)
T ss_dssp CSCBCCSTTSCSSSBEEECSSCEEESS--SSSCCEE
T ss_pred CcCcCCCccCCCceEecccCCCcccCC--CceEEEe
Confidence 3479999 988654433235789998 9988875
No 137
>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex, structural genomics, NPPSFA; HET: ATP; 2.00A {Methanocaldococcus jannaschii}
Probab=38.45 E-value=14 Score=30.18 Aligned_cols=32 Identities=22% Similarity=0.546 Sum_probs=19.3
Q ss_pred CceecCCcCC-CC------ceecccCCCCceEcC-CCccc
Q psy15975 43 LLRWCPSPDC-NN------AIKVQHVEARPVVCK-CGHRF 74 (312)
Q Consensus 43 ~~~~CP~~~C-~~------~i~~~~~~~~~v~C~-C~~~f 74 (312)
++..||+|+| .+ .+...+......+|. |+..|
T Consensus 104 gvl~C~Np~CITn~E~v~s~F~v~~~~~~~lrC~YCe~~~ 143 (149)
T 2yww_A 104 GTLKCTNPNCITNKEKVRGKFKIESKNPLKIRCYYCEKFL 143 (149)
T ss_dssp SSSCCSCTTSGGGTSCCCCEEEEEEETTEEEEETTTCCBC
T ss_pred CeEEcCCCCCCcCCcccccEEEEEeCCCCEEEeeCCCcCh
Confidence 5678999999 31 122212124457888 88765
No 138
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=38.10 E-value=19 Score=21.74 Aligned_cols=17 Identities=29% Similarity=0.813 Sum_probs=13.7
Q ss_pred cccccCCccCCCCCchh
Q psy15975 74 FCFACGENWHDPVRCSL 90 (312)
Q Consensus 74 fC~~C~~~~H~p~~C~~ 90 (312)
.|++|+.+.|...+|..
T Consensus 2 ~C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRA 18 (37)
T ss_dssp CBSSSCCSSCCTTTSSC
T ss_pred cccccCCCCcchhhCcC
Confidence 58899988888877864
No 139
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=36.84 E-value=21 Score=26.29 Aligned_cols=44 Identities=23% Similarity=0.588 Sum_probs=31.4
Q ss_pred hhHHhhh-cCCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCC
Q psy15975 104 TSNWIAA-NTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWE 151 (312)
Q Consensus 104 ~~~~i~~-~~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~ 151 (312)
...|+.. ....|..|+...-. .=-.-.|.. ||.-||..|.....
T Consensus 11 ~p~W~~d~~~~~C~~C~~~F~~--~~RrhhCr~--CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 11 QPTWVPDSEAPNCMNCQVKFTF--TKRRHHCRA--CGKVFCGVCCNRKC 55 (90)
T ss_dssp CCCCCCGGGCCBCTTTCCBCCS--SSCCEECTT--TCCEECGGGSCEEE
T ss_pred CCcCcccccCCcCcCCCCcccc--hhhCccccC--CCCEECCcccCCee
Confidence 3457654 46789999987642 222357888 99999999988754
No 140
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=36.45 E-value=25 Score=21.41 Aligned_cols=17 Identities=35% Similarity=0.837 Sum_probs=13.0
Q ss_pred cccccCCccCCCCCchh
Q psy15975 74 FCFACGENWHDPVRCSL 90 (312)
Q Consensus 74 fC~~C~~~~H~p~~C~~ 90 (312)
.|++|+++.|....|..
T Consensus 2 ~C~~Cg~~GH~a~~C~~ 18 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQ 18 (39)
T ss_dssp BCTTTCCBSSCTTTCCS
T ss_pred eeeccCCCCcccccCCC
Confidence 48888888888777764
No 141
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=36.35 E-value=23 Score=26.10 Aligned_cols=40 Identities=25% Similarity=0.575 Sum_probs=28.4
Q ss_pred CceecCCcCCCCceecccCCCCceEcC-CCcccccccCCc-cCCCCCchhh
Q psy15975 43 LLRWCPSPDCNNAIKVQHVEARPVVCK-CGHRFCFACGEN-WHDPVRCSLL 91 (312)
Q Consensus 43 ~~~~CP~~~C~~~i~~~~~~~~~v~C~-C~~~fC~~C~~~-~H~p~~C~~~ 91 (312)
....|+.++|..... ..+.|. |+..||..-+.+ .| .|...
T Consensus 24 ~~~~C~~~~Ck~~~~------l~f~C~~C~~~FC~~HR~~e~H---~C~~~ 65 (86)
T 1wfe_A 24 KSYSCSFKGCTDVEL------VAVICPYCEKNFCLRHRHQSDH---DCEKL 65 (86)
T ss_dssp CCEECCSTTCCCEES------SCEECTTTCCEECGGGCSTGGG---TCSSS
T ss_pred CCCCCCCcCCCCCCc------cceECCCCCcccccccCCccCC---CCCCC
Confidence 345799999987732 358999 999999976642 24 56543
No 142
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=36.02 E-value=14 Score=32.94 Aligned_cols=24 Identities=25% Similarity=0.564 Sum_probs=17.0
Q ss_pred CCCCCCCCceeEec--CCCCceeecC
Q psy15975 112 TKECPKCLVTIEKD--GGCNHMVCKN 135 (312)
Q Consensus 112 ~k~CP~C~~~IeK~--~GCnhMtC~~ 135 (312)
.++||.|+.+|++. +|=.-..|+.
T Consensus 242 G~pC~~CG~~I~~~~~~gR~t~~CP~ 267 (271)
T 2xzf_A 242 GEKCSRCGAEIQKIKVAGRGTHFCPV 267 (271)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTT
T ss_pred CCCCCCCCCEeeEEEECCCceEECCC
Confidence 48999999999984 5533344444
No 143
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=35.71 E-value=17 Score=32.40 Aligned_cols=24 Identities=25% Similarity=0.618 Sum_probs=16.6
Q ss_pred CCCCCCCCceeEec--CCCCceeecC
Q psy15975 112 TKECPKCLVTIEKD--GGCNHMVCKN 135 (312)
Q Consensus 112 ~k~CP~C~~~IeK~--~GCnhMtC~~ 135 (312)
.++||.|+.+|++. +|=.--.|+.
T Consensus 235 g~pC~~CG~~I~~~~~~gR~t~~CP~ 260 (266)
T 1ee8_A 235 GLPCPACGRPVERRVVAGRGTHFCPT 260 (266)
T ss_dssp TSBCTTTCCBCEEEESSSCEEEECTT
T ss_pred CCCCCCCCCEeeEEEECCCceEECCC
Confidence 58999999999994 4433334443
No 144
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.13 E-value=7.4 Score=28.71 Aligned_cols=32 Identities=13% Similarity=0.149 Sum_probs=25.1
Q ss_pred CCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCC
Q psy15975 114 ECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEP 152 (312)
Q Consensus 114 ~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~ 152 (312)
.||-|..... +.++-.. |||-||-.|...|-.
T Consensus 9 ~CPI~~~~~~-----dPV~~~~--cGh~f~r~cI~~~l~ 40 (94)
T 2yu4_A 9 TCPITKEEMK-----KPVKNKV--CGHTYEEDAIVRMIE 40 (94)
T ss_dssp BCTTTCSBCS-----SEEEESS--SCCEEEHHHHHHHHH
T ss_pred ECcCcCchhc-----CCEEcCC--CCCeecHHHHHHHHH
Confidence 6898887763 5677644 999999999988854
No 145
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=34.59 E-value=15 Score=32.80 Aligned_cols=24 Identities=29% Similarity=0.620 Sum_probs=16.4
Q ss_pred CCCCCCCCceeEec--CCCCceeecC
Q psy15975 112 TKECPKCLVTIEKD--GGCNHMVCKN 135 (312)
Q Consensus 112 ~k~CP~C~~~IeK~--~GCnhMtC~~ 135 (312)
.++||.|+.+|++. +|=.--.|+.
T Consensus 245 g~pC~~CG~~I~~~~~~gR~t~~CP~ 270 (273)
T 3u6p_A 245 GNPCKRCGTPIEKTVVAGRGTHYCPR 270 (273)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTT
T ss_pred cCCCCCCCCeEEEEEECCCCeEECCC
Confidence 47999999999983 5533333443
No 146
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=34.26 E-value=16 Score=32.48 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=16.6
Q ss_pred CCCCCCCCceeEec--CCCCceeecC
Q psy15975 112 TKECPKCLVTIEKD--GGCNHMVCKN 135 (312)
Q Consensus 112 ~k~CP~C~~~IeK~--~GCnhMtC~~ 135 (312)
.++||.|+.+|++. +|=.-..|+.
T Consensus 234 g~pC~~CG~~I~~~~~~gR~t~~CP~ 259 (262)
T 1k3x_A 234 GEPCERCGSIIEKTTLSSRPFYWCPG 259 (262)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTT
T ss_pred cCCCCCCCCEeEEEEECCCCeEECCC
Confidence 46999999999984 5433344444
No 147
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=34.06 E-value=16 Score=32.59 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=16.5
Q ss_pred CCCCCCCCceeEec--CCCCceeecC
Q psy15975 112 TKECPKCLVTIEKD--GGCNHMVCKN 135 (312)
Q Consensus 112 ~k~CP~C~~~IeK~--~GCnhMtC~~ 135 (312)
.++||.|+.+|++. +|=.--.|+.
T Consensus 240 g~pC~~CG~~I~~~~~~gR~t~~CP~ 265 (268)
T 1k82_A 240 GEPCRVCGTPIVATKHAQRATFYCRQ 265 (268)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTT
T ss_pred CCCCCCCCCEeeEEEECCCceEECCC
Confidence 48999999999984 4433334443
No 148
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=34.05 E-value=17 Score=26.81 Aligned_cols=31 Identities=23% Similarity=0.464 Sum_probs=23.1
Q ss_pred cCCCCCCCCceeEecCCCCceeecCCCCCcceecccC
Q psy15975 111 NTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCL 147 (312)
Q Consensus 111 ~~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~ 147 (312)
....|..|+..+-.. +-+.|. ||..||-.=.
T Consensus 24 ~~~rC~~C~kkvgl~---~~f~Cr---Cg~~FC~~HR 54 (85)
T 1wff_A 24 IMKHCFLCGKKTGLA---TSFECR---CGNNFCASHR 54 (85)
T ss_dssp CCCBCSSSCCBCSSS---SCEECT---TCCEECTTTC
T ss_pred cCccchhhCCeeccc---CCeEcC---CCCEecccCC
Confidence 446899999876443 458997 9999997543
No 149
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=34.05 E-value=15 Score=26.31 Aligned_cols=31 Identities=19% Similarity=0.533 Sum_probs=23.5
Q ss_pred cCCCCCCCCceeEecCCCCceeecCCCCCcceecccCC
Q psy15975 111 NTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLG 148 (312)
Q Consensus 111 ~~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~ 148 (312)
...+|..|+..+... -+.|. |+..||-.=.-
T Consensus 24 ~~~RC~~C~kkvgL~----~f~Cr---Cg~~FCs~HRy 54 (74)
T 1wfp_A 24 TATRCLSCNKKVGVT----GFKCR---CGSTFCGTHRY 54 (74)
T ss_dssp CCCBCSSSCCBCTTT----CEECT---TSCEECTTTCS
T ss_pred cCccchhhcCccccc----ceEec---cCCEeccccCC
Confidence 456899998887655 48995 99999975433
No 150
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=33.88 E-value=19 Score=30.49 Aligned_cols=29 Identities=28% Similarity=0.567 Sum_probs=19.9
Q ss_pred cCCCCCCCCce-eEecCCCCceeecCCCCCcce
Q psy15975 111 NTKECPKCLVT-IEKDGGCNHMVCKNQSCKAEF 142 (312)
Q Consensus 111 ~~k~CP~C~~~-IeK~~GCnhMtC~~~~C~~~F 142 (312)
.-+.||+|+.. +.-...+.| +|.+ |++-|
T Consensus 112 ~~~~Cp~Cg~g~fma~h~dR~-~CGk--C~~t~ 141 (189)
T 2xzm_9 112 QQKGCPKCGPGIFMAKHYDRH-YCGK--CHLTL 141 (189)
T ss_dssp CSEECSTTCSSCEEEECSSCE-EETT--TCCCB
T ss_pred ccccCCccCCCccccCccCCC-ccCC--ceeEE
Confidence 34899999955 334555655 8887 87665
No 151
>2be7_D Aspartate carbamoyltransferase regulatory chain; atcase, psychrophilic, cold adaptation, alloste holoenzyme; 2.85A {Moritella profunda}
Probab=32.57 E-value=17 Score=29.84 Aligned_cols=32 Identities=22% Similarity=0.656 Sum_probs=19.0
Q ss_pred CceecCCcCC-CCc------eecccCC-CCceEcC-CCccc
Q psy15975 43 LLRWCPSPDC-NNA------IKVQHVE-ARPVVCK-CGHRF 74 (312)
Q Consensus 43 ~~~~CP~~~C-~~~------i~~~~~~-~~~v~C~-C~~~f 74 (312)
++..||+|+| .+. +...+.. ....+|. |+..|
T Consensus 104 gv~~C~Np~CITn~E~v~s~F~v~~~~~~~~lrC~YCe~~~ 144 (153)
T 2be7_D 104 NVFPCPNSNCITHGEPVTSSFSIKKTKGNIGLKCKYCEKTF 144 (153)
T ss_dssp SSSCCSCTTCTTSSSSCCCCEEEEEETTEEEEEETTTCCEE
T ss_pred CeEEcCCCCCCcCCcccccEEEEeecCCCCEEEeeCCCCEe
Confidence 5678999999 421 1221111 3357888 87765
No 152
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=32.11 E-value=34 Score=23.97 Aligned_cols=27 Identities=26% Similarity=0.655 Sum_probs=19.4
Q ss_pred CCCCceecccCCCCceEcC-CCcccccccCC
Q psy15975 51 DCNNAIKVQHVEARPVVCK-CGHRFCFACGE 80 (312)
Q Consensus 51 ~C~~~i~~~~~~~~~v~C~-C~~~fC~~C~~ 80 (312)
.|+..+.. -...-.|. ||..||..|..
T Consensus 16 ~C~~~F~~---~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 16 ICSKKFSL---LNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp TTCCBCBT---TBCCEECTTTCCEECGGGSC
T ss_pred CCCCccCC---ccccccCCCCCEEEcccccC
Confidence 46554432 24578999 99999999975
No 153
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=31.79 E-value=23 Score=30.38 Aligned_cols=39 Identities=28% Similarity=0.679 Sum_probs=28.2
Q ss_pred HHhhhcCCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCC
Q psy15975 106 NWIAANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPW 150 (312)
Q Consensus 106 ~~i~~~~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w 150 (312)
.|+. ...|+.|+.+.- -.--.-.|.. ||.-||..|....
T Consensus 157 ~W~~--~~~C~~C~~~F~--~~~rrhhCr~--CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 157 NWAD--GRVCHRCRVEFT--FTNRKHHCRN--CGQVFCGQCTAKQ 195 (220)
T ss_dssp CCCC--CSBCTTTCCBCC--SSSCCEECTT--TCCEECSTTSCEE
T ss_pred cCCC--CCccCCCCCccC--CcccccccCC--cCCEEChHHhCCe
Confidence 4653 368999988763 2233467888 9999999998754
No 154
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=31.21 E-value=50 Score=24.30 Aligned_cols=42 Identities=26% Similarity=0.464 Sum_probs=28.8
Q ss_pred eecCCcCCCCceecccCCCCceEcC-CCcccccccCCccCCCCCc
Q psy15975 45 RWCPSPDCNNAIKVQHVEARPVVCK-CGHRFCFACGENWHDPVRC 88 (312)
Q Consensus 45 ~~CP~~~C~~~i~~~~~~~~~v~C~-C~~~fC~~C~~~~H~p~~C 88 (312)
+-|| +|.+.-.+-+-....|.|. ||...|--=++.+.-...|
T Consensus 37 VkCp--~C~~~~~VFShA~t~V~C~~CgtvL~~PTGGKa~l~egc 79 (86)
T 3iz6_X 37 VKCQ--GCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLTEGC 79 (86)
T ss_dssp EECT--TTCCEEEEETTCSSCCCCSSSCCCCSCCCSSSCCCSCBC
T ss_pred EECC--CCCCeeEEEecCCcEEEccCCCCEeecCCCCCEEecCCc
Confidence 6799 7998644333356789999 9999997555555444444
No 155
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=30.66 E-value=35 Score=21.90 Aligned_cols=18 Identities=28% Similarity=0.774 Sum_probs=14.0
Q ss_pred ccccccCCccCCCCCchh
Q psy15975 73 RFCFACGENWHDPVRCSL 90 (312)
Q Consensus 73 ~fC~~C~~~~H~p~~C~~ 90 (312)
..|++|+...|....|..
T Consensus 7 ~~C~~Cg~~GH~a~~C~~ 24 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRA 24 (49)
T ss_dssp CBCTTTCCBTCCTTTCCC
T ss_pred CeeeecCCCCcChhhCcC
Confidence 468888888888777764
No 156
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=30.66 E-value=14 Score=33.08 Aligned_cols=43 Identities=12% Similarity=0.217 Sum_probs=30.5
Q ss_pred CCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCCCCCCCCCCC
Q psy15975 112 TKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCNR 162 (312)
Q Consensus 112 ~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h~~~~~~C~~ 162 (312)
.-.||=|..++ -+.++-.. |||-||-.|...|-..++ ...|+.
T Consensus 181 el~CPIcl~~f-----~DPVts~~--CGHsFcR~cI~~~~~~~~-~~~CPv 223 (267)
T 3htk_C 181 ELTCPITCKPY-----EAPLISRK--CNHVFDRDGIQNYLQGYT-TRDCPQ 223 (267)
T ss_dssp CSBCTTTSSBC-----SSEEEESS--SCCEEEHHHHHHHSTTCS-CEECSG
T ss_pred eeECcCccCcc-----cCCeeeCC--CCCcccHHHHHHHHHhCC-CCCCCc
Confidence 35899999888 56787755 999999999887643221 235663
No 157
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=30.41 E-value=27 Score=30.17 Aligned_cols=19 Identities=37% Similarity=1.009 Sum_probs=15.8
Q ss_pred CCceEcC-CCcccccccCCc
Q psy15975 63 ARPVVCK-CGHRFCFACGEN 81 (312)
Q Consensus 63 ~~~v~C~-C~~~fC~~C~~~ 81 (312)
...-.|. ||..||..|...
T Consensus 178 ~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 178 TRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp BCCEECTTTCCEECTTTCCE
T ss_pred ccccccCCCcCEeChhhcCC
Confidence 4568899 999999999763
No 158
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=30.33 E-value=25 Score=25.62 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=15.5
Q ss_pred cccccccCCccCCCCCchh
Q psy15975 72 HRFCFACGENWHDPVRCSL 90 (312)
Q Consensus 72 ~~fC~~C~~~~H~p~~C~~ 90 (312)
..+|+.|+..-|..-.|+.
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~ 23 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPS 23 (83)
T ss_dssp --CCSSSCCSSSCGGGCGG
T ss_pred cCCCCCCCCCCCccccCCC
Confidence 4679999999999988986
No 159
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=30.10 E-value=11 Score=20.77 Aligned_cols=11 Identities=45% Similarity=1.138 Sum_probs=9.1
Q ss_pred ceecccCCCCC
Q psy15975 141 EFCWVCLGPWE 151 (312)
Q Consensus 141 ~FCw~C~~~w~ 151 (312)
.||-.|.+||-
T Consensus 6 ffcetcskpwl 16 (26)
T 1loi_A 6 FFCETCSKPWL 16 (26)
T ss_dssp HHHHTSSCTTG
T ss_pred HHHHhcCCchh
Confidence 48889999984
No 160
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=29.79 E-value=23 Score=25.42 Aligned_cols=45 Identities=22% Similarity=0.550 Sum_probs=30.7
Q ss_pred eecCCcCCCCceecccCCCCceEcC-CCcccccccCCccCCCCCchhhHHHhhh
Q psy15975 45 RWCPSPDCNNAIKVQHVEARPVVCK-CGHRFCFACGENWHDPVRCSLLRRWIKK 97 (312)
Q Consensus 45 ~~CP~~~C~~~i~~~~~~~~~v~C~-C~~~fC~~C~~~~H~p~~C~~~~~w~~~ 97 (312)
..|..++|... +...+.|. |+..||..-+.+. ...|.....|..+
T Consensus 15 ~~Cs~~~C~~~------dflpf~C~~C~~~FC~~HR~~e--~H~C~~~~~~~~~ 60 (75)
T 1wys_A 15 QHCQVQHCRQR------DFLPFVCDGCSGIFCLEHRSKD--SHGCSEVNVVKER 60 (75)
T ss_dssp CCCSCTTTCCC------SCCCEECTTTCCEECSTTCSSG--GGTCCCCSSCSSC
T ss_pred CCcCcccCCCc------cceeeECcccCcCcCcccCCcc--ccCCCCCcccccc
Confidence 46887888866 23468999 9999998766521 1367776666543
No 161
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=29.21 E-value=41 Score=26.79 Aligned_cols=37 Identities=11% Similarity=0.150 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHHHHHhhC--------CCceecCCcCCCCceeccc
Q psy15975 22 DPKVKLKYQHLITNSFVECN--------RLLRWCPSPDCNNAIKVQH 60 (312)
Q Consensus 22 ~~e~~~~y~~~~~~~~v~~~--------~~~~~CP~~~C~~~i~~~~ 60 (312)
+++.+...-..+.+.-+-.+ +...+|+ +|++......
T Consensus 40 ~~e~l~faf~~~~~gt~~e~A~L~i~~~p~~~~C~--~CG~~~~~~~ 84 (139)
T 3a43_A 40 AEDIVKFAMEQLFAGTIAEGAEIEFVEEEAVFKCR--NCNYEWKLKE 84 (139)
T ss_dssp CHHHHHHHHHHHHTTSTTTTCEEEEEEECCEEEET--TTCCEEEGGG
T ss_pred hHHHHHHHHHHHHcCCcccCCEEEEEecCCcEECC--CCCCEEeccc
Confidence 45555444444443333223 5567888 6988877653
No 162
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=28.50 E-value=21 Score=25.86 Aligned_cols=43 Identities=19% Similarity=0.505 Sum_probs=31.3
Q ss_pred hhHHhhh-cCCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCC
Q psy15975 104 TSNWIAA-NTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPW 150 (312)
Q Consensus 104 ~~~~i~~-~~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w 150 (312)
...|+.. ....|+.|+...--. --.-.|.. ||.-||..|....
T Consensus 12 ~~~W~pd~~~~~C~~C~~~Fs~~--~RrHHCR~--CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 12 KGYWQEDEDAPACNGCGCVFTTT--VRRHHCRN--CGYVLCGDCSRHR 55 (84)
T ss_dssp CSCCCCTTTCCBCTTTCCBCCTT--SCCEECTT--TCCEECTGGGCCE
T ss_pred CCccccCCCCCCCcCcCCccccc--hhcccccC--CCcEEChHHhCCe
Confidence 3457754 567999999886322 23467988 9999999998754
No 163
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=27.93 E-value=45 Score=29.52 Aligned_cols=30 Identities=20% Similarity=0.411 Sum_probs=25.2
Q ss_pred hcCCCCCCCCceeEecCCCCceeecCCCCCcc
Q psy15975 110 ANTKECPKCLVTIEKDGGCNHMVCKNQSCKAE 141 (312)
Q Consensus 110 ~~~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~ 141 (312)
.+.+-||.|+.+.+...+=..+.|.. |+..
T Consensus 105 ~~~~fC~~CG~~~~~~~~~~~~~C~~--C~~~ 134 (269)
T 1vk6_A 105 RSHKYCGYCGHEMYPSKTEWAMLCSH--CRER 134 (269)
T ss_dssp HTTSBCTTTCCBEEECSSSSCEEESS--SSCE
T ss_pred hcCCccccCCCcCccCCCceeeeCCC--CCCE
Confidence 36799999999998887778899988 9853
No 164
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=27.37 E-value=25 Score=28.23 Aligned_cols=26 Identities=27% Similarity=0.682 Sum_probs=21.9
Q ss_pred CCCCCCce---eEecCCCCceeecCCCCCcc
Q psy15975 114 ECPKCLVT---IEKDGGCNHMVCKNQSCKAE 141 (312)
Q Consensus 114 ~CP~C~~~---IeK~~GCnhMtC~~~~C~~~ 141 (312)
.||.|+.| +.|.++=-.+.|.. ||..
T Consensus 104 lC~~C~sPdT~l~k~~r~~~l~C~A--CGa~ 132 (138)
T 1nee_A 104 ICHECNRPDTRIIREGRISLLKCEA--CGAK 132 (138)
T ss_dssp HHTCCSSCSSCCEEETTTTEEECST--TSCC
T ss_pred ECCCCCCcCcEEEEcCCeEEEEccC--CCCC
Confidence 79999877 77788889999998 9853
No 165
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=27.23 E-value=26 Score=24.33 Aligned_cols=26 Identities=15% Similarity=0.440 Sum_probs=18.1
Q ss_pred CCCCCCCceeEecCCCCceeecCCCCCcc
Q psy15975 113 KECPKCLVTIEKDGGCNHMVCKNQSCKAE 141 (312)
Q Consensus 113 k~CP~C~~~IeK~~GCnhMtC~~~~C~~~ 141 (312)
=.|..|+..++...| ..+.|.. ||+.
T Consensus 22 Y~C~~Cg~~~~l~~~-~~iRC~~--CG~R 47 (63)
T 3h0g_L 22 YLCADCGARNTIQAK-EVIRCRE--CGHR 47 (63)
T ss_dssp CBCSSSCCBCCCCSS-SCCCCSS--SCCC
T ss_pred EECCCCCCeeecCCC-CceECCC--CCcE
Confidence 478888887776654 5577876 7754
No 166
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=26.81 E-value=3e+02 Score=25.69 Aligned_cols=42 Identities=14% Similarity=0.037 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccceeeeecccCccchhHHHHHHHHHHH
Q psy15975 226 VQFLKKAVDILCQCRQTLMYTYVFAYYLRKNNQSVLFEDNQKDLESA 272 (312)
Q Consensus 226 ~~fl~~a~~~l~~~R~~L~~sY~~~yy~~~~~~~~~fe~~Q~~le~~ 272 (312)
.+=|+.++ .-||+-=+-|+.-++=.+- ..+.+|.+|++|+..
T Consensus 150 iqRLE~~I---d~c~~~C~~sC~~~l~~~v--D~e~ye~qqKQL~qv 191 (390)
T 1deq_A 150 MKRLEVDI---DIKIRSCKGSCSRALEHKV--DLEDYKNQQKQLEQV 191 (390)
T ss_pred HHHHHHHH---HHHhcccccccchhhhhhc--cHHHHHHHHHHHHhh
Confidence 34466666 4466665555554443321 234678888887765
No 167
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.76 E-value=4.2e+02 Score=25.87 Aligned_cols=87 Identities=21% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------HHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHh
Q psy15975 172 RGAQERSRAALQRYLFYCNRYMNHMQSLKFE--------HKLYASVKEKMEEMQQHNMSWIEVQFLKKAVDILCQCRQTL 243 (312)
Q Consensus 172 ~~~~~~~~~~l~ry~~y~~r~~~h~~s~~~e--------~~l~~~~~~~~~~~~~~~~~~~d~~fl~~a~~~l~~~R~~L 243 (312)
+....++...-..|..|-+-.+.|.+-++.+ +.|+..|+..+.+||. |+.++++=++ .=
T Consensus 95 r~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQR----------LEvDIdiqir---sC 161 (562)
T 3ghg_A 95 RGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKR----------LEVDIDIKIR---SC 161 (562)
T ss_dssp SSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH---HG
T ss_pred HHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH---hc
Q ss_pred hccceeeeecccCccchhHHHHHHHHHHHH
Q psy15975 244 MYTYVFAYYLRKNNQSVLFEDNQKDLESAT 273 (312)
Q Consensus 244 ~~sY~~~yy~~~~~~~~~fe~~Q~~le~~~ 273 (312)
+-+++=++=-+-+-+ -+|.+|++||...
T Consensus 162 KgsCsr~~~~~vd~~--sY~~~QKQLeQv~ 189 (562)
T 3ghg_A 162 RGSCSRALAREVDLK--DYEDQQKQLEQVI 189 (562)
T ss_dssp GGTBSCCCCCCCCHH--HHHHHHHHHHHHH
T ss_pred cccccchheeecchH--HHHHHHHHHHHHh
No 168
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=26.53 E-value=43 Score=24.49 Aligned_cols=35 Identities=31% Similarity=0.566 Sum_probs=25.4
Q ss_pred CCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCC
Q psy15975 112 TKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPW 150 (312)
Q Consensus 112 ~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w 150 (312)
...|+.|+...-.. --.-.|.. ||.-||..|....
T Consensus 9 ~~~C~~C~~~F~~~--~RrHHCR~--CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 9 ESRCYGCAVKFTLF--KKEYGCKN--CGRAFCNGCLSFS 43 (88)
T ss_dssp CSBCTTTCCBCCSS--SCEEECSS--SCCEEETTTSCEE
T ss_pred CCCCcCcCCcccCc--cccccCCC--CCCEEChhHcCCc
Confidence 46788898865322 23457888 9999999998753
No 169
>1pg5_B Aspartate carbamoyltransferase regulatory chain; 2.60A {Sulfolobus acidocaldarius} SCOP: d.58.2.1 g.41.7.1 PDB: 2be9_B*
Probab=26.16 E-value=33 Score=28.47 Aligned_cols=32 Identities=25% Similarity=0.558 Sum_probs=19.1
Q ss_pred CceecCCcCC-CCc----e---ecccCCCCceEcC-CCccc
Q psy15975 43 LLRWCPSPDC-NNA----I---KVQHVEARPVVCK-CGHRF 74 (312)
Q Consensus 43 ~~~~CP~~~C-~~~----i---~~~~~~~~~v~C~-C~~~f 74 (312)
++..||+|+| .+. + ...+......+|. |+..|
T Consensus 113 gvl~C~Np~CITn~~~Epvs~F~v~~~~~~~lrC~YCe~~~ 153 (168)
T 1pg5_B 113 GILKCPNPYCITSNDVEAIPTFKTLTEKPLKMRCEYCETII 153 (168)
T ss_dssp SSSCCSCTTBGGGTCTTSCCEEEEEETTTTEEEETTTCCEE
T ss_pred CeEEcCCCCcccCCCCccccEEEEEcCCCCEEEeeCCCCEe
Confidence 5678999999 422 1 1111124457888 87765
No 170
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=25.63 E-value=17 Score=24.99 Aligned_cols=36 Identities=33% Similarity=0.743 Sum_probs=27.2
Q ss_pred CCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCC
Q psy15975 113 KECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEP 152 (312)
Q Consensus 113 k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~ 152 (312)
-.|+-|...= -.+|+.|. |.- |...||-.||+.|.-
T Consensus 10 ~~C~iC~KTK-FADG~Gh~-C~y--Ck~r~CaRCGg~v~l 45 (62)
T 2a20_A 10 PTCGICHKTK-FADGCGHN-CSY--CQTKFCARCGGRVSL 45 (62)
T ss_dssp CCCSSSSCSC-CCSSCCEE-BTT--TCCEECTTSEEEEES
T ss_pred chhhhhccce-eccCCCcc-ccc--cCCeeecccCCEeee
Confidence 4677776532 25889886 544 999999999999875
No 171
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=23.83 E-value=34 Score=29.50 Aligned_cols=40 Identities=25% Similarity=0.753 Sum_probs=28.1
Q ss_pred hHHhhhcCCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCC
Q psy15975 105 SNWIAANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPW 150 (312)
Q Consensus 105 ~~~i~~~~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w 150 (312)
..|+. ...|+.|+.+.-- .--.-.|.. ||.-||..|....
T Consensus 159 p~W~~--~~~C~~C~~~F~~--~~RrhHCR~--CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 159 PDWVD--AEECHRCRVQFGV--MTRKHHCRA--CGQIFCGKCSSKY 198 (226)
T ss_dssp CCCCC--CSBCTTTCCBCBT--TBCCEECTT--TCCEECTTTCCEE
T ss_pred ccccc--CCCCcCcCCCCCc--cccccccCC--CcCEeChhhcCCc
Confidence 34653 3589999876632 223467888 9999999998754
No 172
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=23.70 E-value=36 Score=18.88 Aligned_cols=19 Identities=32% Similarity=0.700 Sum_probs=15.8
Q ss_pred ccccccCCccCCCCCchhh
Q psy15975 73 RFCFACGENWHDPVRCSLL 91 (312)
Q Consensus 73 ~fC~~C~~~~H~p~~C~~~ 91 (312)
..||+|+.+-|.--.|..-
T Consensus 3 ~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC
T ss_pred CeeEeCCCCCcccccCCCc
Confidence 4699999999998888753
No 173
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.65 E-value=22 Score=23.35 Aligned_cols=35 Identities=20% Similarity=0.487 Sum_probs=20.9
Q ss_pred HhhhcCCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCC
Q psy15975 107 WIAANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWE 151 (312)
Q Consensus 107 ~i~~~~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~ 151 (312)
|...+.+.||+|++..-...- =..+.||-|...|.
T Consensus 7 ~~~~~~~~CPrCn~~f~~~~s----------Lr~HmkycCp~~v~ 41 (49)
T 2e72_A 7 GQDGGRKICPRCNAQFRVTEA----------LRGHMCYCCPEMVE 41 (49)
T ss_dssp SCCSSCCCCTTTCCCCSSHHH----------HHHHHHHHCTTTCC
T ss_pred cccCCceeCCcccccccchHH----------HHhhhhhcCcchhh
Confidence 434467899999887643211 23445566666664
No 174
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=23.39 E-value=22 Score=25.12 Aligned_cols=35 Identities=29% Similarity=0.481 Sum_probs=22.4
Q ss_pred cCCCCCCCCceeEecCCCCceeecCCCCCcceec-----ccCCCCCCCC
Q psy15975 111 NTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCW-----VCLGPWEPHG 154 (312)
Q Consensus 111 ~~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw-----~C~~~w~~h~ 154 (312)
.++.||.|+.+++-... . =..-||- +=|+.|...+
T Consensus 8 ~~~~CP~Cgkp~~W~~~------~---~~rPFCSeRCr~iDLg~Wa~e~ 47 (68)
T 1lv3_A 8 ITVNCPTCGKTVVWGEI------S---PFRPFCSKRCQLIDLGEWAAEE 47 (68)
T ss_dssp CEEECTTTCCEEECSSS------S---SCCSSSSHHHHHHHHSCSSSSS
T ss_pred CcCcCCCCCCccccccc------C---CCCcccCHHHHhhhHHHHhcCC
Confidence 45799999999984322 1 1334554 5578887644
No 175
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=23.29 E-value=87 Score=24.93 Aligned_cols=24 Identities=8% Similarity=0.167 Sum_probs=16.9
Q ss_pred HhhhCCCHHHHHHHHHHHHHHHHh
Q psy15975 16 VMRLVRDPKVKLKYQHLITNSFVE 39 (312)
Q Consensus 16 i~~~l~~~e~~~~y~~~~~~~~v~ 39 (312)
.-..|.||.....|...+...-+.
T Consensus 65 Ay~~L~dp~~R~~Yd~~~~~~~~~ 88 (155)
T 2l6l_A 65 AWKILGNEETKREYDLQRCEDDLR 88 (155)
T ss_dssp HHHHSSSHHHHCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHcchhhcc
Confidence 445778898888898877654443
No 176
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=23.23 E-value=39 Score=22.09 Aligned_cols=18 Identities=33% Similarity=0.746 Sum_probs=12.0
Q ss_pred ccccccCCccCCCCCchh
Q psy15975 73 RFCFACGENWHDPVRCSL 90 (312)
Q Consensus 73 ~fC~~C~~~~H~p~~C~~ 90 (312)
..|++|+..-|....|..
T Consensus 13 ~~C~~Cg~~GH~a~~C~~ 30 (55)
T 1a1t_A 13 VKCFNCGKEGHIAKNCRA 30 (55)
T ss_dssp CBCTTTCCBSSCGGGCSS
T ss_pred cceeeeCCCCcChhhcCC
Confidence 457777777776666654
No 177
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=22.30 E-value=91 Score=27.15 Aligned_cols=52 Identities=15% Similarity=0.309 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHH-HHhhCC-CceecCCcCCCCceecccC-----CCCceEcC-CCcccc
Q psy15975 22 DPKVKLKYQHLITNS-FVECNR-LLRWCPSPDCNNAIKVQHV-----EARPVVCK-CGHRFC 75 (312)
Q Consensus 22 ~~e~~~~y~~~~~~~-~v~~~~-~~~~CP~~~C~~~i~~~~~-----~~~~v~C~-C~~~fC 75 (312)
|++++..|.++.... -+-.-+ .-.-|- +|...|++... +...++|| ||...=
T Consensus 174 ~~~lL~~Yerir~~~~g~avv~v~~~~C~--GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~ 233 (256)
T 3na7_A 174 EPKIYSFYERIRRWAKNTSIVTIKKQACG--GCFIRLNDKIYTEVLTSGDMITCPYCGRILY 233 (256)
T ss_dssp CHHHHHHHHHHHHHHGGGSEEECBTTBCT--TTCCBCCHHHHHHHHHSSSCEECTTTCCEEE
T ss_pred CHHHHHHHHHHHHhCCCceEEEeeCCccC--CCCeeeCHHHHHHHHCCCCEEECCCCCeeEE
Confidence 789999999887532 110000 112465 68777765421 34568888 776543
No 178
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=22.28 E-value=57 Score=27.79 Aligned_cols=19 Identities=37% Similarity=0.975 Sum_probs=15.7
Q ss_pred CCceEcC-CCcccccccCCc
Q psy15975 63 ARPVVCK-CGHRFCFACGEN 81 (312)
Q Consensus 63 ~~~v~C~-C~~~fC~~C~~~ 81 (312)
...-.|. ||..||..|...
T Consensus 175 ~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 175 NRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp SCCEECTTTCCEECSTTSCE
T ss_pred ccccccCCcCCEEChHHhCC
Confidence 4568899 999999999763
No 179
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=21.79 E-value=39 Score=23.09 Aligned_cols=24 Identities=29% Similarity=0.719 Sum_probs=16.6
Q ss_pred hcCCCCCCCCceeEecCCCCceeecCCCCCc
Q psy15975 110 ANTKECPKCLVTIEKDGGCNHMVCKNQSCKA 140 (312)
Q Consensus 110 ~~~k~CP~C~~~IeK~~GCnhMtC~~~~C~~ 140 (312)
.+.-.||.|+.+.. .|-.|.. ||+
T Consensus 28 p~l~~c~~cGe~~~-----~H~vc~~--CG~ 51 (60)
T 3v2d_5 28 PTLVPCPECKAMKP-----PHTVCPE--CGY 51 (60)
T ss_dssp CCCEECTTTCCEEC-----TTSCCTT--TCE
T ss_pred CceeECCCCCCeec-----ceEEcCC--CCc
Confidence 35678999998873 4566665 764
No 180
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=21.41 E-value=56 Score=26.94 Aligned_cols=20 Identities=35% Similarity=0.846 Sum_probs=13.7
Q ss_pred cCCcCCCCceecccCCCCceEcC-CCc
Q psy15975 47 CPSPDCNNAIKVQHVEARPVVCK-CGH 72 (312)
Q Consensus 47 CP~~~C~~~i~~~~~~~~~v~C~-C~~ 72 (312)
|| .||++...+ .+. .|| ||+
T Consensus 141 C~--~CG~i~~~~---~p~-~CP~Cg~ 161 (170)
T 3pwf_A 141 CP--ICGYTAVDE---APE-YCPVCGA 161 (170)
T ss_dssp CT--TTCCEEESC---CCS-BCTTTCC
T ss_pred eC--CCCCeeCCC---CCC-CCCCCCC
Confidence 88 699988632 222 888 875
No 181
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=21.37 E-value=35 Score=27.71 Aligned_cols=27 Identities=33% Similarity=0.651 Sum_probs=21.9
Q ss_pred CCCCCCCce---eEecCCCCceeecCCCCCcc
Q psy15975 113 KECPKCLVT---IEKDGGCNHMVCKNQSCKAE 141 (312)
Q Consensus 113 k~CP~C~~~---IeK~~GCnhMtC~~~~C~~~ 141 (312)
-.||.|+.| +.|.++=-.+.|.. ||..
T Consensus 105 VlC~~C~sPdT~L~k~~r~~~l~C~A--CGa~ 134 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFHFLKCEA--CGAE 134 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSBCCCCSS--SCCC
T ss_pred EECCCCCCcCcEEEEeCCEEEEEecC--CCCC
Confidence 589999876 77778888899998 8853
No 182
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=20.80 E-value=53 Score=28.44 Aligned_cols=23 Identities=26% Similarity=0.691 Sum_probs=15.0
Q ss_pred CCCCCCCc----eeEecCCCCceeecCCCCCc
Q psy15975 113 KECPKCLV----TIEKDGGCNHMVCKNQSCKA 140 (312)
Q Consensus 113 k~CP~C~~----~IeK~~GCnhMtC~~~~C~~ 140 (312)
-+||.|+- .+- +.| ++.|.+ ||+
T Consensus 15 ~~CP~Cg~~d~~~~~-~dg--~~~C~~--Cg~ 41 (255)
T 1nui_A 15 IPCDNCGSSDGNSLF-SDG--HTFCYV--CEK 41 (255)
T ss_dssp ECCSSSCCSSCEEEE-TTS--CEEETT--TCC
T ss_pred CcCCCCCCCCCceEe-CCC--Ceeccc--CCC
Confidence 49999976 333 345 467766 665
No 183
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=20.71 E-value=20 Score=25.78 Aligned_cols=32 Identities=3% Similarity=-0.224 Sum_probs=23.2
Q ss_pred CCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCC
Q psy15975 113 KECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEP 152 (312)
Q Consensus 113 k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~ 152 (312)
-.||-|..... +.++=. ||+-||..|...|-.
T Consensus 15 ~~CpI~~~~m~-----dPV~~~---cGhtf~r~~I~~~l~ 46 (85)
T 2kr4_A 15 FRDPLMDTLMT-----DPVRLP---SGTVMDRSIILRHLL 46 (85)
T ss_dssp TBCTTTCSBCS-----SEEECT---TSCEEEHHHHHHHHH
T ss_pred eECcccCchhc-----CCeECC---CCCEECHHHHHHHHh
Confidence 37888876652 344444 999999999988854
No 184
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=20.69 E-value=1.1e+02 Score=23.33 Aligned_cols=26 Identities=27% Similarity=0.626 Sum_probs=15.3
Q ss_pred CCceecCCcCCCCceecccCCCCce-EcC-CCc
Q psy15975 42 RLLRWCPSPDCNNAIKVQHVEARPV-VCK-CGH 72 (312)
Q Consensus 42 ~~~~~CP~~~C~~~i~~~~~~~~~v-~C~-C~~ 72 (312)
+...+|+ +|++.+..+. ... .|| ||.
T Consensus 71 p~~~~C~--~CG~~~e~~~---~~~~~CP~Cgs 98 (119)
T 2kdx_A 71 KVELECK--DCSHVFKPNA---LDYGVCEKCHS 98 (119)
T ss_dssp CCEEECS--SSSCEECSCC---STTCCCSSSSS
T ss_pred cceEEcC--CCCCEEeCCC---CCCCcCccccC
Confidence 4556777 5887776532 234 566 654
No 185
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=20.55 E-value=68 Score=24.59 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=11.9
Q ss_pred ccccccCCccCCCCCchh
Q psy15975 73 RFCFACGENWHDPVRCSL 90 (312)
Q Consensus 73 ~fC~~C~~~~H~p~~C~~ 90 (312)
..|+.|+..-|...+|..
T Consensus 43 ~~C~~Cg~~GH~~~~C~~ 60 (124)
T 2lli_A 43 IQCSKCDEVGHYRSQCPH 60 (124)
T ss_dssp SCSSSSSCSSSSTTTSCC
T ss_pred ccccccCCCCCccccCcC
Confidence 357777777776666654
No 186
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=20.34 E-value=51 Score=30.44 Aligned_cols=31 Identities=16% Similarity=0.428 Sum_probs=22.4
Q ss_pred CCCCCCCCceeEecCCCCceeecCCCCCcc-eecccCCCC
Q psy15975 112 TKECPKCLVTIEKDGGCNHMVCKNQSCKAE-FCWVCLGPW 150 (312)
Q Consensus 112 ~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~-FCw~C~~~w 150 (312)
...||-|..... +.+.=. |||. ||+.|...|
T Consensus 295 ~~~C~IC~~~~~-----~~v~lp---CgH~~fC~~C~~~~ 326 (345)
T 3t6p_A 295 ERTCKVCMDKEV-----SVVFIP---CGHLVVCQECAPSL 326 (345)
T ss_dssp TCBCTTTSSSBC-----CEEEET---TCCEEECTTTGGGC
T ss_pred CCCCCccCCcCC-----ceEEcC---CCChhHhHHHHhcC
Confidence 468999977652 223333 9999 999999988
No 187
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=20.33 E-value=28 Score=32.61 Aligned_cols=40 Identities=25% Similarity=0.543 Sum_probs=31.8
Q ss_pred CCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCC
Q psy15975 112 TKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWE 151 (312)
Q Consensus 112 ~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~ 151 (312)
...|+-|-..+.-++.=.-.+|.++.|++.|=..|+..|-
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWL 347 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWF 347 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHH
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHH
Confidence 3479999888765455555789866799999999999995
No 188
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=20.23 E-value=23 Score=32.14 Aligned_cols=29 Identities=21% Similarity=0.475 Sum_probs=23.0
Q ss_pred CCCCCCCCceeEecC-CCCceeecCCCCCcce
Q psy15975 112 TKECPKCLVTIEKDG-GCNHMVCKNQSCKAEF 142 (312)
Q Consensus 112 ~k~CP~C~~~IeK~~-GCnhMtC~~~~C~~~F 142 (312)
+.+||+|+.+|-.++ .=|...|.. |+|++
T Consensus 24 ~~kc~~~~~~~~~~~l~~~~~v~~~--~~~~~ 53 (304)
T 2f9y_B 24 WTKCDSCGQVLYRAELERNLEVCPK--CDHHM 53 (304)
T ss_dssp EECCTTTCCCEETTHHHHTTTBCTT--TCCBC
T ss_pred HHhhhhccchhhHHHHHHHhCCCCC--CCCCC
Confidence 478999999998873 337788877 98876
No 189
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=20.19 E-value=30 Score=27.79 Aligned_cols=27 Identities=30% Similarity=0.649 Sum_probs=19.3
Q ss_pred CCCCCCCce---eEecCCCCceeecCCCCCcc
Q psy15975 113 KECPKCLVT---IEKDGGCNHMVCKNQSCKAE 141 (312)
Q Consensus 113 k~CP~C~~~---IeK~~GCnhMtC~~~~C~~~ 141 (312)
-.||.|+.| +.+.++=-.+.|.. ||..
T Consensus 104 VlC~~C~sPdT~l~k~~r~~~l~C~A--CGa~ 133 (139)
T 3cw2_K 104 VECSTCKSLDTILKKEKKSWYIVCLA--CGAQ 133 (139)
T ss_dssp SSCCSSSSSCCCSCSSCSTTTSSCCC------
T ss_pred eECCCCCCcCcEEEEeCCeEEEEecC--CCCC
Confidence 489999877 66777888899998 9853
No 190
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=20.09 E-value=30 Score=19.73 Aligned_cols=18 Identities=28% Similarity=0.774 Sum_probs=14.8
Q ss_pred ccccccCCccCCCCCchh
Q psy15975 73 RFCFACGENWHDPVRCSL 90 (312)
Q Consensus 73 ~fC~~C~~~~H~p~~C~~ 90 (312)
.-||+|+.+-|..-+|..
T Consensus 7 ~~C~nCgk~GH~ar~C~~ 24 (29)
T 1nc8_A 7 IRCWNCGKEGHSARQCRA 24 (29)
T ss_dssp CBCTTTSCBSSCGGGCCS
T ss_pred CEEEECCccccCHhHCcc
Confidence 469999999998877764
Done!