RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15975
(312 letters)
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase;
NMR {Homo sapiens} SCOP: g.44.1.1
Length = 60
Score = 106 bits (267), Expect = 9e-30
Identities = 53/59 (89%), Positives = 58/59 (98%)
Query: 107 WIAANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCNRYDE 165
WIAANTKECPKC VTIEKDGGCNHMVC+NQ+CKAEFCWVCLGPWEPHGS+WY+CNRY+E
Sbjct: 1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGSAWYNCNRYNE 59
Score = 25.1 bits (55), Expect = 8.2
Identities = 5/15 (33%), Positives = 6/15 (40%)
Query: 68 CKCGHRFCFACGENW 82
C FC+ C W
Sbjct: 30 QNCKAEFCWVCLGPW 44
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: g.44.1.4
Length = 86
Score = 47.3 bits (112), Expect = 2e-07
Identities = 13/85 (15%), Positives = 23/85 (27%), Gaps = 5/85 (5%)
Query: 22 DPKVKLKYQHLITNSFVECNRLLRWCPSPDCNNAIKVQHVEARPVVCKCGHRFCFACGEN 81
+ +T + + WC C+ + + +C FC C
Sbjct: 3 SGSSGALFHKKLTEGVLMRDPKFLWCA--QCSFGFIYEREQLEATCPQCHQTFCVRCKRQ 60
Query: 82 W---HDPVRCSLLRRWIKKCDDDSE 103
W H C + W + S
Sbjct: 61 WEEQHRGRSCEDFQNWKRMNSGPSS 85
Score = 31.9 bits (72), Expect = 0.053
Identities = 11/56 (19%), Positives = 14/56 (25%), Gaps = 3/56 (5%)
Query: 110 ANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCNRYDE 165
C +C + C C FC C WE SC +
Sbjct: 23 PKFLWCAQCSFGFIYEREQLEATCPQ--CHQTFCVRCKRQWEEQHRG-RSCEDFQN 75
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo
sapiens}
Length = 80
Score = 37.7 bits (87), Expect = 3e-04
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 28 KYQHLITNSFVECNRLLRWCPSPDCNNAIKVQHVEARPVVCK------CGHRFCFACGEN 81
+YQ V + CP P C + + + R V C+ CG FC C E
Sbjct: 10 RYQQYGAEECVLQMGGV-LCPRPGCGAGL-LPEPDQRKVTCEGGNGLGCGFAFCRECKEA 67
Query: 82 WH 83
+H
Sbjct: 68 YH 69
Score = 26.6 bits (58), Expect = 3.4
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 116 PKCLVTIEKDGGCNHMVCKNQ---SCKAEFCWVCLGPW 150
P C + + + C+ C FC C +
Sbjct: 31 PGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAY 68
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 39.0 bits (90), Expect = 4e-04
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Query: 64 RPVVCKCGHRFCFAC-GENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTI 122
V +CGH FC C ++ + C R+ K + +I + T CP C+
Sbjct: 26 LIVSTECGHVFCSQCLRDSLKNANTCPTCRK---KINHKRYHPIYIGSGTVSCPICMDGY 82
Query: 123 EKDGGCNHMVCKNQSCKAEFCWVCLGPW 150
+ N + + C FC CL
Sbjct: 83 -SEIVQNGRLIVSTECGHVFCSQCLRDS 109
>1zd1_A Sulfotransferase 4A1; SGC, SULT4A1, structural genomics, structural
genomics conso transferase; 2.24A {Homo sapiens}
Length = 284
Score = 37.8 bits (88), Expect = 0.003
Identities = 14/87 (16%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 212 KMEEMQQHNMSWIEVQFLKKAVDILCQCRQTLMYTYVFAYYLRKNNQSVLF---EDNQKD 268
+ + ++ E F ++ ++ + + +V ++ + + +VLF ED +D
Sbjct: 147 RSLRTMSYRGTFQE--FCRRFMN--DKLGYGSWFEHVQEFWEHRMDSNVLFLKYEDMHRD 202
Query: 269 LESATEKLSEYLERDITSENLANIKQQ 295
L + E+L+ +L L + +
Sbjct: 203 LVTMVEQLARFLGVSCDKAQLEALTEH 229
>1ls6_A ARYL sulfotransferase; SULT 1A1, PAP, P-nitrophenol, positive
cooperativity, two substrate binding sites; HET: A3P
NPO; 1.90A {Homo sapiens} SCOP: c.37.1.5 PDB: 2d06_A*
3u3o_A* 3u3k_A* 3u3m_A* 3u3j_A* 3u3r_A* 1z28_A* 3qvv_A*
3qvu_A* 1z29_A* 1cjm_A 2a3r_A*
Length = 295
Score = 37.1 bits (86), Expect = 0.005
Identities = 8/48 (16%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 248 VFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANI 292
V ++ VL+ ED +++ + +K+ E++ + E + +
Sbjct: 176 VQEWWELSRTHPVLYLFYEDMKENPKREIQKILEFVGHSLPEETVDFM 223
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 36.4 bits (83), Expect = 0.010
Identities = 11/55 (20%), Positives = 14/55 (25%)
Query: 96 KKCDDDSETSNWIAANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPW 150
D + C C G + C N C + VCL W
Sbjct: 292 MPDWSDGPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEW 346
Score = 27.9 bits (61), Expect = 4.4
Identities = 10/51 (19%), Positives = 11/51 (21%), Gaps = 15/51 (29%)
Query: 68 CKCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKC 118
KC + C L W K D CP C
Sbjct: 332 AKCVLKCHAVC------------LEEWFKTLMDGKTFLEVSFGQ---CPFC 367
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.013
Identities = 18/117 (15%), Positives = 37/117 (31%), Gaps = 19/117 (16%)
Query: 175 QERSRAALQRYLFYCNRYMNHMQSLKFEHKLYASVKEKMEEMQQHNMSWIEVQFLKKAVD 234
+ + LF+ K V++ +EE+ + N ++
Sbjct: 56 MSKDAVSGTLRLFWT-----------LLSKQEEMVQKFVEEVLRINYKFLMSPIKT---- 100
Query: 235 ILCQCRQTLMYTYVFAYYL-RKNNQSVLFEDNQKDLESATEKLSEYLERDITSENLA 290
+ RQ M T ++ R N + +F KL + L ++N+
Sbjct: 101 ---EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Score = 32.1 bits (72), Expect = 0.30
Identities = 22/176 (12%), Positives = 53/176 (30%), Gaps = 49/176 (27%)
Query: 163 YDEEEAKVARGAQERSRAALQRYLFYCNRYMNHMQSLKFEH----KLYASVKEKMEEMQQ 218
Y + + ++ S + Y+ +R N Q + + Y +++ + E++
Sbjct: 91 YKFLMSPIKTEQRQPSMMT-RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 219 H--------------------------------NMSWIEVQFLKKAVDILCQCRQTLMYT 246
+ W+ ++ +L Q L+Y
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM-LQKLLYQ 208
Query: 247 YVFAYYLRKNNQSVLFEDNQKDLESATEKLSEYLERDITSENLAN---IKQQVQDK 299
+ N S D+ +++ + L R + S+ N + VQ+
Sbjct: 209 ------IDPNWTSR--SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Score = 30.2 bits (67), Expect = 1.0
Identities = 14/114 (12%), Positives = 34/114 (29%), Gaps = 14/114 (12%)
Query: 207 ASVKEKMEEMQQHNMSWIEVQFLKKAVDILCQCRQTLMYTYVFAYYLRKNNQSVLFEDN- 265
+ + E + + +W V K I+ L + ++ +F +
Sbjct: 331 SIIAESIRDGLATWDNWKHVNC-DKLTTIIESSLNVLEPAEYRKMF----DRLSVFPPSA 385
Query: 266 ---QKDLESATEKLSEYLERDITSE----NLANIKQQVQDKYRLVEIQLKYSYK 312
L + + + ++ +L KQ + + I L+ K
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE-KQPKESTISIPSIYLELKVK 438
Score = 28.7 bits (63), Expect = 3.2
Identities = 45/332 (13%), Positives = 94/332 (28%), Gaps = 88/332 (26%)
Query: 16 VMRLVRDPKVKLKYQ---HLITNSFVECNR-------LLRWCPSPDCNNAIKVQHVEARP 65
+ + KV+ K + CN L + D N + H
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLN--LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 66 VVCKCGHRFCFACGENWHDPVRCSLLRRWIKKC----DD--DSETSNWIAANTKECPKCL 119
+ + +R L + + C + +++ W A N C K L
Sbjct: 225 LRI-----------HSIQAELRRLLKSKPYENCLLVLLNVQNAKA--WNAFNLS-C-KIL 269
Query: 120 VTIEKDGGCNHMVCKNQSCK--AEFCWVCLGPWEPHG--SSWYSCNRYDE-EEAK----- 169
+T + + + + + L P E + C D E
Sbjct: 270 LT-TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 170 VARGAQERSRAALQRYLFYCNRYMNHMQSLKFEHKLYASVKE-KMEEMQQH--------- 219
E R L + + +++N K + +S+ + E ++
Sbjct: 329 RLSIIAESIRDGLATWDNW--KHVNCD---KLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 220 ---------NMSWIEVQFLKKAVDILCQCRQTLMYTYVFAYYLRKNNQSVLFEDNQKDLE 270
++ W +V + ++ + S++ + + E
Sbjct: 384 SAHIPTILLSLIWFDVIK-SDVMVVVNKLH----------------KYSLVEKQPK---E 423
Query: 271 SATEKLSEYLERDITSENLANIKQQVQDKYRL 302
S S YLE + EN + + + D Y +
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Score = 28.3 bits (62), Expect = 4.0
Identities = 44/302 (14%), Positives = 75/302 (24%), Gaps = 118/302 (39%)
Query: 4 IVLIRPGVDDGTVMRLVRDPKVKLKYQHLITNSF-VECNRLL--RWCPSPDCNNAIKVQH 60
+VL + V++ K N+F + C LL R+ D +A H
Sbjct: 248 LVL-----LN------VQNAK--------AWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 61 V------------EARPVVCKCGHRFCF-----ACGENWHDPVRCSLLRRWIKKCDDDSE 103
+ E + ++ K N P R S++ I+ D +
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN---PRRLSIIAESIR--DGLAT 343
Query: 104 TSNWIAANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWE-----------P 152
NW H+ C + E L P E P
Sbjct: 344 WDNW---------------------KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 153 HGSS---------WYSCNRYDEEEAKVARGAQERSRAALQRYLFYCNRYMNHMQSLKFEH 203
+ W+ + D V + S Q S+
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMV--VVNKLHKYSLVEKQPKESTI--------SI---P 429
Query: 204 KLYASVKEKMEEMQQHNMSWIEVQFLKKAVDILCQCRQTLMYTYVFAYYLRKNNQSVLFE 263
+Y +K K+E + + VD Y ++ +
Sbjct: 430 SIYLELKVKLENEYALH---------RSIVD-----------HYNIPKTFDSDDLIPPYL 469
Query: 264 DN 265
D
Sbjct: 470 DQ 471
>2zpt_X Tyrosine-ester sulfotransferase; SULT1D1, catecholamine,
sulfonation; HET: A3P GOL; 1.15A {Mus musculus} PDB:
2zvp_X* 2zvq_X* 2zyt_X* 2zyu_X* 2zyv_X* 2zyw_X*
Length = 295
Score = 35.1 bits (81), Expect = 0.018
Identities = 12/48 (25%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 248 VFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANI 292
V +++ ++ +L+ ED +++ + +K+ ++LE+DI E L I
Sbjct: 176 VKSWWEKRKEYRILYLFYEDMKENPKCEIQKILKFLEKDIPEEILNKI 223
>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform
A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens}
SCOP: c.37.1.5
Length = 350
Score = 34.9 bits (80), Expect = 0.024
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 248 VFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANI 292
+ + K + LF E+ Q+DL+ + E++ +L R + E L ++
Sbjct: 178 IKGWLRMKGKDNFLFITYEELQQDLQGSVERICGFLGRPLGKEALGSV 225
>3bfx_A Sulfotransferase 1C2; PAP, structural genomics, PSI, protein
structure initiative, structural genomics consortium,
SGC, alternative splicing; HET: A3P; 1.80A {Homo
sapiens} SCOP: c.37.1.5
Length = 296
Score = 34.7 bits (80), Expect = 0.026
Identities = 10/49 (20%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 247 YVFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANI 292
+V ++ K+ +LF ED ++D + K+ +++ + + L I
Sbjct: 176 HVKGWWEMKDRHQILFLFYEDIKRDPKHEIRKVMQFMGKKVDETVLDKI 224
>1q20_A SULT2B1B, sulfotransferase family, cytosolic, 2B, member 1 isoform
B; pregnenolone, cholesterol, PAP; HET: A3P PLO; 2.30A
{Homo sapiens} SCOP: c.37.1.5 PDB: 1q1z_A* 1q22_A*
Length = 299
Score = 34.8 bits (80), Expect = 0.026
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 248 VFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANI 292
+ + K + LF E+ Q+DL+ + E++ +L R + E L ++
Sbjct: 180 IKGWLRMKGKDNFLFITYEELQQDLQGSVERICGFLGRPLGKEALGSV 227
>3ckl_A Sulfotransferase family cytosolic 1B member 1; SULT1B1, human
cytosolic sulfotransferase, resveratrol, SGC, cytoplasm,
lipid metabolism; HET: STL A3P; 2.00A {Homo sapiens}
PDB: 2z5f_A*
Length = 298
Score = 34.8 bits (80), Expect = 0.027
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 245 YTYVFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANI 292
+T+V ++ +K +LF ED +++ + +K+ +LE+++ E L I
Sbjct: 176 FTHVKNWWKKKEEHPILFLYYEDMKENPKEEIKKIIRFLEKNLNDEILDRI 226
>2gwh_A Sulfotransferase 1C2; sulfate conjugation, pentachlorophenol, PA
pesticide, structural genomics, structural genomics
consort transferase; HET: A3P PCI; 1.80A {Homo sapiens}
PDB: 2ad1_A*
Length = 298
Score = 34.8 bits (80), Expect = 0.029
Identities = 11/56 (19%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 245 YTYVFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANIKQQVQ 297
+ +V ++ K+ +L+ ED +K+ + +KL+E++ + + + L I
Sbjct: 176 HEHVKGWWEAKDKHRILYLFYEDMKKNPKHEIQKLAEFIGKKLDDKVLDKIVHYTS 231
>1j99_A Alcohol sulfotransferase; dehydroepiandosterone, DHEA; HET: AND;
1.99A {Homo sapiens} SCOP: c.37.1.5 PDB: 1ov4_A* 3f3y_A*
2qp3_A* 2qp4_A* 1efh_A*
Length = 293
Score = 34.6 bits (80), Expect = 0.031
Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 245 YTYVFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANI 292
+ ++ + + ++ L E+ ++D EK+ ++L + + E L I
Sbjct: 172 FDHIHGWMPMREEKNFLLLSYEELKQDTGRTIEKICQFLGKTLEPEELNLI 222
>2reo_A Putative sulfotransferase 1C3; sulfate conjugation, PAP, structural
genom consortium, SGC; HET: A3P; 2.65A {Homo sapiens}
PDB: 2h8k_A*
Length = 305
Score = 34.7 bits (80), Expect = 0.031
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 248 VFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANI 292
V ++ K+ +L+ ED +KD + EK+ ++LE+DI+ E L I
Sbjct: 186 VKGWWAAKDMHRILYLFYEDIKKDPKREIEKILKFLEKDISEEILNKI 233
>1aqu_A EST, estrogen sulfotransferase; PAP, sulfonation, 17-beta
estradiol, steroid-binding; HET: A3P EST; 1.60A {Mus
musculus} SCOP: c.37.1.5 PDB: 1aqy_A* 1bo6_A* 1hy3_A*
1g3m_A*
Length = 297
Score = 34.4 bits (79), Expect = 0.040
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 248 VFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANI 292
V A++ + N VLF ED ++D+ KL E+LER ++E + I
Sbjct: 178 VKAWWEKSKNSRVLFMFYEDMKEDIRREVVKLIEFLERKPSAELVDRI 225
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 33.2 bits (75), Expect = 0.040
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 9/87 (10%)
Query: 59 QHVEARPVVCKCGHRFCFACGENWHD--PVRCSLLRRWIKKCDDDSETSNWIAANTKECP 116
++V RP +CGHR+C C + P C+ + S + A
Sbjct: 38 RNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAAR 97
Query: 117 KCLVTIEKDGGCNHMVCKNQSCKAEFC 143
+ + ++ VC + C +
Sbjct: 98 REVESLP-------AVCPSDGCTWKGT 117
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 33.1 bits (75), Expect = 0.042
Identities = 13/46 (28%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 64 RPVVCKCGHRFCFACGENWHD-PVRCSLLRRWIKKCDDDSETSNWI 108
V C H FC C W + C + R+ IK N I
Sbjct: 76 EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCI 121
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 31.3 bits (71), Expect = 0.073
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 65 PVVCKCGHRFCFACGENWHD 84
PVV KC H FC +C
Sbjct: 28 PVVTKCRHYFCESCALEHFR 47
>1fmj_A Retinol dehydratase; sulfotransferase, adenosine 3',5'-
diphosphate; HET: A3P RTL; 2.00A {Spodoptera frugiperda}
SCOP: c.37.1.5 PDB: 1fml_A* 1x8l_A* 1x8k_A* 1x8j_A*
Length = 351
Score = 33.0 bits (75), Expect = 0.094
Identities = 10/51 (19%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 245 YTYVFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANI 292
+ +V + ++++ ++LF ED KDL +++++L + ++ E + +
Sbjct: 228 FEHVKEAWAKRHDPNMLFLFYEDYLKDLPGCIARIADFLGKKLSEEQIQRL 278
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL
conjugation, UBL conjugation pathway; 2.10A {Homo
sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 31.3 bits (71), Expect = 0.14
Identities = 9/24 (37%), Positives = 9/24 (37%)
Query: 59 QHVEARPVVCKCGHRFCFACGENW 82
V CGHRFC AC
Sbjct: 25 LMALREAVQTPCGHRFCKACIIKS 48
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.23
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 10/28 (35%)
Query: 197 QSLK-FE--HKLYA-------SVKEKME 214
Q+LK + KLYA ++K ME
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATME 47
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 29.0 bits (65), Expect = 0.31
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 64 RPVVCKCGHRFCFACGENWHD 84
PV C H FC+ C +
Sbjct: 27 HPVSLPCKHVFCYLCVKGASW 47
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 29.0 bits (65), Expect = 0.32
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 25/67 (37%)
Query: 59 QHVEARPVVCKCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKC 118
V P +CGHRFC +C + + ++ +C C
Sbjct: 22 HLVLCSPKQTECGHRFCESC------------MAALLSS-------------SSPKCTAC 56
Query: 119 LVTIEKD 125
+I KD
Sbjct: 57 QESIVKD 63
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.41
Identities = 30/152 (19%), Positives = 49/152 (32%), Gaps = 48/152 (31%)
Query: 145 VCLGPWEPHGSSWYSCNRYDEEEAKVARGAQERSRAAL-QRYLFYCNRYMNHMQSLK--- 200
V GP P S Y N + A ++SR +R L + NR+ L
Sbjct: 378 VVSGP--P--QSLYGLNLTLRKAK--APSGLDQSRIPFSERKLKFSNRF------LPVAS 425
Query: 201 -FEH-KLYASVKEK-MEEMQQHNMSWIEVQFLKKAVDILCQCRQTLMYTYVFAYYLRKNN 257
F H L + +++ ++N+S+ A DI V+
Sbjct: 426 PF-HSHLLVPASDLINKDLVKNNVSF-------NAKDIQIP---------VYD------- 461
Query: 258 QSVLFEDNQKDLESATEKLSEYLERDITSENL 289
D DL + +SE + I +
Sbjct: 462 ----TFDG-SDLRVLSGSISERIVDCIIRLPV 488
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 30.9 bits (69), Expect = 0.48
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 65 PVVCKCGHRFCFACGENWHDP 85
+ CGH C +C +W +
Sbjct: 345 VKIEPCGHLMCTSCLTSWQES 365
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 28.6 bits (64), Expect = 0.52
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 26/60 (43%)
Query: 66 VVCKCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEKD 125
+ +C H FC +C + R + CPKC + + +
Sbjct: 30 TITECLHTFCKSC------------IVRHFYY--------------SNRCPKCNIVVHQT 63
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL
conjugation, UBL conjugation pathway; 2.20A {Homo
sapiens}
Length = 170
Score = 30.1 bits (67), Expect = 0.53
Identities = 9/25 (36%), Positives = 9/25 (36%)
Query: 59 QHVEARPVVCKCGHRFCFACGENWH 83
V CGHRFC AC
Sbjct: 25 LMALREAVQTPCGHRFCKACIIKSI 49
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 28.2 bits (63), Expect = 0.56
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 64 RPVVCKCGHRFCFACGENW 82
V +CGH FC C +
Sbjct: 22 LIVSTECGHVFCSQCLRDS 40
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 28.9 bits (65), Expect = 0.57
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 64 RPVVCKCGHRFCFACGENWH----DPVRC 88
RP + CGH C C E + VRC
Sbjct: 31 RPKLLHCGHTICRQCLEKLLASSINGVRC 59
>1q44_A RARO47, steroid sulfotransferase, AT2G03760/; APO, structu
genomics, protein structure initiative, center for
eukaryot structural genomics; 1.90A {Arabidopsis
thaliana} SCOP: c.37.1.5 PDB: 2q3m_A
Length = 326
Score = 30.6 bits (69), Expect = 0.62
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 212 KMEEMQQHNMSWIEV--QFLKKAVDILCQCRQTLMYTYVFAYYLRKNNQSVLF---EDNQ 266
K+ + + + F + L Y Y R+N VLF E+ +
Sbjct: 177 KLAPEETADYPIEKAVEAFCEGKFIGGPFWDHILEY----WYASRENPNKVLFVTYEELK 232
Query: 267 KDLESATEKLSEYLERDITSE 287
K E ++++E+LE E
Sbjct: 233 KQTEVEMKRIAEFLECGFIEE 253
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 137
Score = 29.6 bits (66), Expect = 0.63
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 51 DCNNAIKVQHVEARPVVCKCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAA 110
D + ++ E P V G +FC + +C D+ + + W+A
Sbjct: 52 DPIQQLNLKGCEVVPDVNVSGQKFCI-----KLLVPSPEGMSEIYLRCQDEQQYARWMAG 106
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 28.0 bits (62), Expect = 0.81
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 64 RPVVCKCGHRFCFACGENW 82
V +CGH FC C +
Sbjct: 34 LIVSTECGHVFCSQCLRDS 52
Score = 27.6 bits (61), Expect = 1.3
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 101 DSETSNWIAANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPW 150
S + + T CP C+ + ++ C FC CL
Sbjct: 4 GSSGTGLRPSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDS 52
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 27.9 bits (62), Expect = 0.85
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 64 RPVVCKCGHRFCFACGENW 82
V +CGH FC C +
Sbjct: 29 LIVSTECGHVFCSQCLRDS 47
Score = 25.2 bits (55), Expect = 8.9
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 109 AANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPW 150
+ T CP C+ + ++ C FC CL
Sbjct: 7 PSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDS 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 28.7 bits (64), Expect = 0.97
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 64 RPVVCKCGHRFCFACGENWHD 84
PV C H C C ++ +
Sbjct: 27 EPVTLPCNHTLCKPCFQSTVE 47
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 58
Score = 27.3 bits (61), Expect = 1.1
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 65 PVVCKCGHRFCFAC-GENWHD---PVRC 88
PV+ +CGH FC AC W D C
Sbjct: 28 PVIIECGHNFCKACITRWWEDLERDFPC 55
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 27.7 bits (62), Expect = 1.2
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 65 PVVCKCGHRFCFAC-GENWHD---PVRC 88
PV CGH FC C + +C
Sbjct: 33 PVTIDCGHNFCLKCITQIGETSCGFFKC 60
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 27.3 bits (61), Expect = 1.3
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 65 PVVCKCGHRFCFAC-GENWHD---PVRC 88
PV CGH FC C + +C
Sbjct: 33 PVTIDCGHNFCLKCITQIGETSCGFFKC 60
>1q4k_B Serine/threonine-protein kinase PLK; six-stranded anti-parallel
beta sheet with one alpha helix, transferase; HET: TPO;
2.30A {Homo sapiens} SCOP: d.223.1.2 d.223.1.2
Length = 259
Score = 29.4 bits (65), Expect = 1.5
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 247 YVFAYYLRKNNQSVLFEDNQKDLESATEKLSEYLERD--ITSENLANIKQQVQDKYRLVE 304
Y Y L N+ VLF D+ + + +Y+ERD + +++ + K L++
Sbjct: 77 YGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQYIERDGTESYLTVSSHPNSLMKKITLLK 136
Query: 305 IQLKY 309
Y
Sbjct: 137 YFRNY 141
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 27.9 bits (62), Expect = 1.6
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 26/62 (41%)
Query: 65 PVVC-KCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIE 123
+C C CF+C +RRW+ + +CP C ++
Sbjct: 35 ARLCPHCSKLCCFSC------------IRRWLTE-------------QRAQCPHCRAPLQ 69
Query: 124 KD 125
Sbjct: 70 LR 71
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A*
Length = 597
Score = 29.4 bits (65), Expect = 1.7
Identities = 19/141 (13%), Positives = 42/141 (29%), Gaps = 6/141 (4%)
Query: 170 VARGAQERSRAALQRYLFYCNRYMNHMQSLKFEHKLYASVKEKMEEMQQHNMSWIEVQFL 229
VA GA A L + SL + + + +E + + F
Sbjct: 415 VAVGAFRSDSA----VLLRTRPVVIVDASLSHPESVNRTKFDCVENGWPSVCIDLTLCFS 470
Query: 230 KKAVDILCQCRQTLMYTYVFAYYLRKNNQSVLFEDNQKDLESATEKLSEYLERDITSENL 289
K ++ L Y + + + + + T + +
Sbjct: 471 YKGKEV--PGYIVLFYNMSLDVNRKAESPPRFYFSSNGTSDVITGSIQVSSREANCRTHQ 528
Query: 290 ANIKQQVQDKYRLVEIQLKYS 310
A +++ V+D ++I+ Y
Sbjct: 529 AFMRKDVRDILTPIQIEAAYH 549
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 27.0 bits (60), Expect = 1.7
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 64 RPVVCKCGHRFCFACGENW 82
+ C H FC+ C W
Sbjct: 18 YSMALPCLHAFCYVCITRW 36
Score = 26.6 bits (59), Expect = 2.3
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 7/43 (16%)
Query: 108 IAANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPW 150
+A + CP CL C FC+VC+ W
Sbjct: 1 MATVAERCPICLEDPSNY-------SMALPCLHAFCYVCITRW 36
>1n2a_A Glutathione S-transferase; HET: GTS; 1.90A {Escherichia coli} SCOP:
a.45.1.1 c.47.1.5 PDB: 1a0f_A*
Length = 201
Score = 28.7 bits (65), Expect = 1.7
Identities = 12/118 (10%), Positives = 36/118 (30%), Gaps = 14/118 (11%)
Query: 167 EAKVARGAQERSRAALQRYLFYCNRYMNHMQSLKFEHKLYASVKEKMEEMQQHNMSWIEV 226
+ ++ SR +L Y ++ + F K + + + ++
Sbjct: 79 DRQLLAPVNSISRYKTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKLQYVNE 138
Query: 227 QFLKKAVDILCQCRQTL--MYTYVFAYYLRKNNQSVLFEDNQKDLESATEKLSEYLER 282
+ +C R T+ Y + + ++ E ++ +++R
Sbjct: 139 ALKDE--HWICGQRFTIADAYLFTVLRWAYAVKLNL----------EGLEHIAAFMQR 184
>3p34_A Serine/threonine-protein kinase PLK1; phosphoprotein binding
domain, PLK1, kinase, transferase; HET: TPO; 1.40A {Homo
sapiens} PDB: 3p2z_A* 3p2w_A* 3p35_A* 3p36_A* 3p37_A*
3q1i_A* 2ogq_A 2ojs_A* 2ojx_A 3bzi_A* 3mhn_A* 3mhq_A
3mq8_B* 4dfw_A* 1q4o_A* 1umw_A* 3hik_A* 3rq7_A* 3fvh_A*
3hih_A ...
Length = 232
Score = 29.0 bits (64), Expect = 1.8
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 247 YVFAYYLRKNNQSVLFEDNQKDLESATEKLSEYLERD--ITSENLANIKQQVQDKYRLVE 304
Y Y L N+ VLF D+ + + +Y+ERD + +++ + K L++
Sbjct: 59 YGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQYIERDGTESYLTVSSHPNSLMKKITLLK 118
Query: 305 IQLKY 309
Y
Sbjct: 119 YFRNY 123
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 28.0 bits (62), Expect = 1.8
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 64 RPVVCKCGHRFCFACGENWHD 84
RP+ C H C C +
Sbjct: 64 RPITTVCQHNVCKDCLDRSFR 84
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.44.1.1
Length = 114
Score = 27.9 bits (61), Expect = 1.8
Identities = 8/43 (18%), Positives = 9/43 (20%)
Query: 40 CNRLLRWCPSPDCNNAIKVQHVEARPVVCKCGHRFCFACGENW 82
C L K + KC H F C
Sbjct: 31 CMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAM 73
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 27.0 bits (60), Expect = 1.9
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 65 PVVCKCGHRFCFACGENWHDPVR-CSLLRRWIKKCDDDSETSN 106
++ C H FC C + W D R C + R + ++ S S+
Sbjct: 27 DLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESSGPSS 69
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 27.0 bits (60), Expect = 2.4
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 20/54 (37%)
Query: 65 PVVCKCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKC 118
PV C H FC AC + + + D + + CP C
Sbjct: 32 PVSADCNHSFCRAC-----------ITLNYESNRNTDGKGN---------CPVC 65
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix,
ARAC family, activator, DNA-binding transcription,
transcription regulation; HET: PAM; 1.90A {Vibrio
cholerae}
Length = 276
Score = 28.7 bits (64), Expect = 2.6
Identities = 12/111 (10%), Positives = 39/111 (35%), Gaps = 4/111 (3%)
Query: 186 LFYCNRYMNHMQSLKFEHKLYASVKEKMEEMQQHNMSWIEVQFLKKAVDILCQCRQTLMY 245
+ + ++ ++S + ++ + +++ N ++ L + V+ + + +
Sbjct: 84 ITISDSFIRSLKSYILGDLMIRNLYSENKDLLLWNCEHNDIAVLSEVVNGFREINYSDEF 143
Query: 246 TYVFAYYLRKNNQSVLFEDNQKDLESATEKLSEYLE----RDITSENLANI 292
VF + D A EK+S ++ R+ ++
Sbjct: 144 LKVFFSGFFSKVEKKYNSIFITDDLDAMEKISCLVKSDITRNWRWADICGE 194
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 28.6 bits (64), Expect = 3.2
Identities = 19/124 (15%), Positives = 32/124 (25%), Gaps = 25/124 (20%)
Query: 47 CPSPDCNNAIKVQHVEARP-------VVCKCGHR----------FCFACGEN--WHDPV- 86
CP P V V+A+ + C+ G+ F C ++ W P+
Sbjct: 17 CPYPMAPPNGHVSPVQAKYILKDSFSIFCETGYELLQGHLPLKSFTAVCQKDGSWDRPMP 76
Query: 87 RCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVC 146
CS I C + + C + ++
Sbjct: 77 ACS-----IVDCGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYTMKVNDGKYVCEA 131
Query: 147 LGPW 150
G W
Sbjct: 132 DGFW 135
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain,
tripartite motif protein 34, interferon- responsive
finger protein 1; NMR {Homo sapiens}
Length = 79
Score = 26.5 bits (59), Expect = 3.5
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 65 PVVCKCGHRFCFAC-GENWHDP 85
P+ CGH C AC + +
Sbjct: 25 PLSLDCGHSLCRACITVSNKEA 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 27.2 bits (60), Expect = 3.6
Identities = 7/18 (38%), Positives = 7/18 (38%)
Query: 65 PVVCKCGHRFCFACGENW 82
PV C H FC C
Sbjct: 36 PVETSCKHLFCRICILRC 53
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 26.5 bits (59), Expect = 3.9
Identities = 16/54 (29%), Positives = 18/54 (33%), Gaps = 20/54 (37%)
Query: 65 PVVCKCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKC 118
P+ CGH FC AC L K D E+S CP C
Sbjct: 32 PLSLDCGHSFCQAC-----------LTANHKKSMLDKGESS---------CPVC 65
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin
activation, cytoplas membrane, cell adhesion; HET: SRT;
1.90A {Homo sapiens} PDB: 2lko_A*
Length = 173
Score = 27.8 bits (61), Expect = 4.0
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 52 CNNAIKVQHVEARPVVCKCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAA 110
+ + ++ E P V G +F + +CD++ + ++W+AA
Sbjct: 91 PAHQMNLRGCEVTPDVNISGQKFNI-----KLLIPVAEGMNEIWLRCDNEKQYAHWMAA 144
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 27.0 bits (60), Expect = 4.0
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 65 PVVCKCGHRFCFAC-GENWHD 84
PV KC H FC C + +
Sbjct: 34 PVSTKCDHIFCKFCMLKLLNQ 54
>1w6g_A Phenylethylamine oxidase; copper containing, metal-binding,
oxidoreductase, TPQ, quinone, holoenzyme; HET: TPQ GOL;
1.55A {Arthrobacter globiformis} SCOP: b.30.2.1 d.17.2.1
d.17.2.1 PDB: 1w6c_A* 1rjo_A* 2bt3_A* 2cfd_A* 2cfg_A*
2cfk_A* 2cfl_A* 2cfw_A* 2cg0_A* 2cg1_A* 1w4n_A* 1sih_A*
1sii_A* 1w5z_A* 3kii_A* 3kn4_A* 1iqy_A* 1avl_A* 1av4_A*
1iqx_A* ...
Length = 646
Score = 28.3 bits (62), Expect = 4.3
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 10/66 (15%)
Query: 125 DGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCNRYDEEEAKVARGAQERSRAALQR 184
DG N + + + +GP G+++ E++ A + A R
Sbjct: 442 DGFTNRVE------EEDVVRQTMGPGNERGNAFSRKRTVLTRESE----AVREADARTGR 491
Query: 185 YLFYCN 190
N
Sbjct: 492 TWIISN 497
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel,
glycosyltransferase, transferase; HET: NDG; 1.85A
{Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A*
2zuw_A*
Length = 759
Score = 28.0 bits (62), Expect = 4.9
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 76 FACGENWHDPVRCSLLRRWI 95
F G+ W +P +R W+
Sbjct: 514 FTGGDVWTNPKLVETVRAWV 533
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding,
exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Length = 124
Score = 26.7 bits (58), Expect = 5.5
Identities = 16/104 (15%), Positives = 29/104 (27%), Gaps = 12/104 (11%)
Query: 45 RWCPSPDCNNAIKVQHVEARPVVCKCGH-RFCFACGENWHDPVRCSLLRRWIKKCDDDSE 103
+ CP C+ +R C C C E H +C + ++ S+
Sbjct: 18 KDCPHIICSYCGATDDHYSR----HCPKAIQCSKCDEVGHYRSQCPHKWKKVQCTLCKSK 73
Query: 104 TSNWIAANTKECPKCLVTIEKDGGCNHMVCKNQSCKAE-FCWVC 146
+ + CP + N +C+ C
Sbjct: 74 KH-----SKERCPS-IWRAYILVDDNEKAKPKVLPFHTIYCYNC 111
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 26.9 bits (59), Expect = 5.8
Identities = 13/55 (23%), Positives = 16/55 (29%), Gaps = 25/55 (45%)
Query: 64 RPVVCKCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKC 118
+PV +C H C C L+R K A CP C
Sbjct: 90 QPVTTECFHNVCKDC------------LQRSFK-------------AQVFSCPAC 119
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA;
rossmann fold, FAD-binding domain, dinucleotide-binding
motif; HET: FAD; 3.20A {Chlorobium tepidum}
Length = 641
Score = 27.4 bits (62), Expect = 7.4
Identities = 12/116 (10%), Positives = 36/116 (31%), Gaps = 36/116 (31%)
Query: 206 YASVKEKMEEMQQHNMSWIEVQFLKKAVDILCQCRQTLMYTYVFAYYLRKNNQSVLFEDN 265
+ ++ +Q ++ +K V ++L
Sbjct: 479 LHRTESIIKRVQH------CLEVMKT--------------AKVTP----AEINTLLMNKG 514
Query: 266 QKDLESATEKLSEYLER-DITSENLANIKQQVQDKYRL----------VEIQLKYS 310
++L++ + ++R I+ +++ V+ V+I++KY
Sbjct: 515 LQELKTPA-RALSLIKRPGISLQDILEHSLSVRSAAEELCNDPRVAEQVQIEIKYE 569
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 25.1 bits (55), Expect = 8.7
Identities = 9/56 (16%), Positives = 14/56 (25%), Gaps = 25/56 (44%)
Query: 64 RPVVCK-CGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKC 118
VV CG+ +C C + ++ CP C
Sbjct: 27 DAVVIPCCGNSYCDECIRTA------------------------LLESDEHTCPTC 58
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 24.6 bits (54), Expect = 8.9
Identities = 5/15 (33%), Positives = 6/15 (40%)
Query: 64 RPVVCKCGHRFCFAC 78
P + C H C C
Sbjct: 18 CPKLLPCLHTLCSGC 32
>2e3e_A Defensin, mutant DEF-BBB; insect defensin, CSAB motif,
antibacterial, antimicrobial protein; NMR {Anopheles
gambiae} PDB: 2e3f_A 2ny9_X
Length = 45
Score = 24.2 bits (52), Expect = 9.9
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 98 CDDDSETSNWIAANTKECP-KCLVTIEKDGGCNHMVC 133
CD S +S W+ N C CLV + G C + +C
Sbjct: 3 CDLASFSSQWVTPNDSLCAAHCLVKGYRGGYCKNKIC 39
>2x64_A Glutathione-S-transferase; detoxification enzyme; HET: GSH; 2.30A
{Xylella fastidiosa}
Length = 207
Score = 26.4 bits (59), Expect = 10.0
Identities = 9/54 (16%), Positives = 22/54 (40%)
Query: 166 EEAKVARGAQERSRAALQRYLFYCNRYMNHMQSLKFEHKLYASVKEKMEEMQQH 219
E ++ ++RA + R++ + N ++ M F Y + + Q +
Sbjct: 77 AERGLSGDGSLKARAEINRWIAFSNSDVHPMYWALFGGTAYLQDPQMIARSQDN 130
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.134 0.437
Gapped
Lambda K H
0.267 0.0779 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,814,909
Number of extensions: 276448
Number of successful extensions: 955
Number of sequences better than 10.0: 1
Number of HSP's gapped: 926
Number of HSP's successfully gapped: 151
Length of query: 312
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 219
Effective length of database: 4,105,140
Effective search space: 899025660
Effective search space used: 899025660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.6 bits)