RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15975
(312 letters)
>d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 95.3 bits (237), Expect = 8e-26
Identities = 53/59 (89%), Positives = 58/59 (98%)
Query: 107 WIAANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCNRYDE 165
WIAANTKECPKC VTIEKDGGCNHMVC+NQ+CKAEFCWVCLGPWEPHGS+WY+CNRY+E
Sbjct: 1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGSAWYNCNRYNE 59
Score = 24.5 bits (53), Expect = 4.0
Identities = 5/19 (26%), Positives = 6/19 (31%)
Query: 66 VVCKCGHRFCFACGENWHD 84
C FC+ C W
Sbjct: 28 RNQNCKAEFCWVCLGPWEP 46
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 73
Score = 61.2 bits (148), Expect = 4e-13
Identities = 11/58 (18%), Positives = 15/58 (25%), Gaps = 3/58 (5%)
Query: 110 ANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCNRYDEEE 167
C +C + C C FC C WE SC + +
Sbjct: 16 PKFLWCAQCSFGFIYEREQLEATCPQ--CHQTFCVRCKRQWEEQH-RGRSCEDFQNWK 70
Score = 47.3 bits (112), Expect = 5e-08
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 5/73 (6%)
Query: 28 KYQHLITNSFVECNRLLRWCPSPDCNNAIKVQHVEARPVVCKCGHRFCFACGENW---HD 84
+ +T + + WC C+ + + +C FC C W H
Sbjct: 2 LFHKKLTEGVLMRDPKFLWCA--QCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHR 59
Query: 85 PVRCSLLRRWIKK 97
C + W +
Sbjct: 60 GRSCEDFQNWKRM 72
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 29.5 bits (66), Expect = 0.073
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 65 PVVCKCGHRFCFACGENWH 83
P + C H C C E
Sbjct: 19 PKLLPCLHTLCSGCLEASG 37
>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 229
Score = 31.2 bits (69), Expect = 0.14
Identities = 12/187 (6%), Positives = 44/187 (23%), Gaps = 1/187 (0%)
Query: 112 TKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCNRYDEEEAKVA 171
T+ PK LV + + + + + + +G +
Sbjct: 21 TENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLKEKYGVRLVFNDKY 80
Query: 172 RGAQERSRAALQRYLFYCNRYMNHMQSLKFEHKLYASVKEKMEEMQQHNMSWIEVQFLKK 231
L + + ++ L + + + + +
Sbjct: 81 ADYNNFYSLYLVKEELANSYVIDADNYLFKNMFRNDLTRSTYFSVYREDCTNEWFLVYGD 140
Query: 232 AVDILCQCRQTLMYTYVFAYYLRKNNQSVLFEDNQKDLESATEKLSEYLERDITSENLAN 291
+ + + + + E + Y + ++ +N+
Sbjct: 141 DYKVQDIIVDSKAGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYWD-NMVKDNIKE 199
Query: 292 IKQQVQD 298
+ V++
Sbjct: 200 LDVYVEE 206
>d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens)
[TaxId: 9606]}
Length = 253
Score = 30.5 bits (67), Expect = 0.20
Identities = 15/193 (7%), Positives = 47/193 (24%), Gaps = 17/193 (8%)
Query: 80 ENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEKDGGCNHMVCKNQSCK 139
+W + + K+ ++D+ + ++ V N +
Sbjct: 42 THWEEEECQQDVSLLRKQAEEDAHLDGAVPIPAASGN----GVDDLQQMIQAVVDNVCWQ 97
Query: 140 AEFCWVCLGPWEPHGSSWYSCNRYDEEEAKVARGAQERSRAALQRYLFYCNRYMNHMQSL 199
+ G W + +A+ R + +
Sbjct: 98 MSLDRKTTALKQLQGHMWRAAFTAGRMKAEFFADVVPAVRKWR----EAGMKVYIYSSGS 153
Query: 200 KFEHKLYASVKEKMEEMQQHNMSWIEVQFLKKAVDILCQCRQTLMYTYVFAYYLRKNNQS 259
KL + + ++ + + K + + ++ + N
Sbjct: 154 VEAQKLLFGHSTEGDILELVDGHFDTKIGHKVESESYRKIADSIGCST---------NNI 204
Query: 260 VLFEDNQKDLESA 272
+ D ++ +A
Sbjct: 205 LFLTDVTREASAA 217
>d1v9fa_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine
synthase D, RluD {Escherichia coli [TaxId: 562]}
Length = 250
Score = 30.3 bits (67), Expect = 0.23
Identities = 18/173 (10%), Positives = 36/173 (20%), Gaps = 11/173 (6%)
Query: 41 NRLLRWCPS-PDCNNAIKVQHVE---ARPVVCKCGHRFCFACGENWHDPVRCSLLRRWIK 96
N LL + P D A V ++ +V E+
Sbjct: 41 NALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAI 100
Query: 97 KCDDDSETSNWIAANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPH--- 153
T + + + + G + + L
Sbjct: 101 GHMTAGGTVDEPISRHPTKRTH-MAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQ 159
Query: 154 ---GSSWYSCNRYDEEEAKVARGAQERSRAALQRYLFYCNRYMNHMQSLKFEH 203
+ + + + + A L +R H L+ H
Sbjct: 160 IRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYH 212
>d1pmta1 a.45.1.1 (A:81-201) Class beta GST {Proteus mirabilis
[TaxId: 584]}
Length = 121
Score = 29.2 bits (65), Expect = 0.29
Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 12/110 (10%)
Query: 173 GAQERSRAALQRYLFYCNRYMNHMQSLKFEHKLYASVKEKMEEMQQHNMSWIEVQFLKKA 232
A ER +L + ++ S F S ++ + +I K+
Sbjct: 7 KALERYHQ--IEWLNFLASEVHKGYSPLFSSDTPESYLPVVKNKLKSKFVYINDVLSKQ- 63
Query: 233 VDILCQCRQTLMYTYVFAYYLRKNNQSVLFEDNQKDLESATEKLSEYLER 282
+C T+ Y+F + ++ D L +YL R
Sbjct: 64 -KCVCGDHFTVADAYLFTLSQWAPHVALDLTD--------LSHLQDYLAR 104
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 28.9 bits (64), Expect = 0.31
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 65 PVVCKCGHRFCFACGENWHD----PVRCSLLRRWIKKCD 99
PV KC H FC C + P +C L + I K
Sbjct: 34 PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 28.0 bits (62), Expect = 0.31
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 65 PVVCKCGHRFCFACGENW--HDPVRCSLLRRWIKKCD 99
+ CGH C +C +W + C R IK +
Sbjct: 36 VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 72
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 27.8 bits (61), Expect = 0.34
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 114 ECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSW 157
CP+C T ++ MV C C C+ G+
Sbjct: 5 GCPRCKTTKYRNPSLKLMVN---VCGHTLCESCVDLLFVRGAGN 45
Score = 27.4 bits (60), Expect = 0.45
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 62 EARPVVCKCGHRFCFACGENW--HDPVRCSLLRRWIKKCD 99
+ +V CGH C +C + C ++K +
Sbjct: 18 SLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57
>d1f2ea1 a.45.1.1 (A:81-201) Class beta GST {Sphingomonas
paucimobilis [TaxId: 13689]}
Length = 121
Score = 28.4 bits (63), Expect = 0.49
Identities = 11/84 (13%), Positives = 26/84 (30%), Gaps = 2/84 (2%)
Query: 171 ARGAQERSRAALQRYLFYCNRYMNHMQSLKFEHKLYASVKEKMEEMQQHNMSWIEVQFLK 230
A G+ +R R L + + F K E +++++ ++ +
Sbjct: 5 AEGSLDRYRL--LSRLSFLGSEFHKAFVPLFAPATSDEAKAAAAESVKNHLAALDKELAG 62
Query: 231 KAVDILCQCRQTLMYTYVFAYYLR 254
+ +Y YV +
Sbjct: 63 RDHYAGNAFSVADIYLYVMLGWPA 86
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 27.2 bits (60), Expect = 0.50
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 61 VEARPVVCKCGHRFCFACGENW-HDPVRCSLLRRWIKKCDDDSETSN 106
+ C H FC+ C W C L + ++ E+ +
Sbjct: 15 PSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHTIESDS 61
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 28.1 bits (61), Expect = 0.72
Identities = 8/55 (14%), Positives = 12/55 (21%)
Query: 28 KYQHLITNSFVECNRLLRWCPSPDCNNAIKVQHVEARPVVCKCGHRFCFACGENW 82
+ + + C L K + KC H F C
Sbjct: 19 ELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAM 73
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 26.2 bits (57), Expect = 0.78
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 62 EARPVVCKCGHRFCFACGENW--HDPVRCSLLRR 93
+ C CG++ C C + C R+
Sbjct: 14 DINFFPCTCGYQICRFCWHRIRTDENGLCPACRK 47
>d1n2aa1 a.45.1.1 (A:81-201) Class beta GST {Escherichia coli
[TaxId: 562]}
Length = 121
Score = 27.7 bits (61), Expect = 0.85
Identities = 6/76 (7%), Positives = 19/76 (25%)
Query: 179 RAALQRYLFYCNRYMNHMQSLKFEHKLYASVKEKMEEMQQHNMSWIEVQFLKKAVDILCQ 238
R +L Y ++ + F K + + + ++ + +
Sbjct: 11 RYKTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKLQYVNEALKDEHWICGQR 70
Query: 239 CRQTLMYTYVFAYYLR 254
Y + +
Sbjct: 71 FTIADAYLFTVLRWAY 86
>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus
sp., strain b0618 [TaxId: 1409]}
Length = 281
Score = 28.1 bits (61), Expect = 1.1
Identities = 10/87 (11%), Positives = 21/87 (24%), Gaps = 1/87 (1%)
Query: 68 CKCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVT-IEKDG 126
+ R+ ++ + + + A K V +
Sbjct: 121 DEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISP 180
Query: 127 GCNHMVCKNQSCKAEFCWVCLGPWEPH 153
+ N S A+ V +G W
Sbjct: 181 DSVKIETANGSYTADKLIVSMGAWNSK 207
>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus
thermophilus [TaxId: 274]}
Length = 318
Score = 28.0 bits (62), Expect = 1.5
Identities = 13/140 (9%), Positives = 35/140 (25%), Gaps = 19/140 (13%)
Query: 50 PDCNNAIKVQHVEARPVVCKCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSN--- 106
P A VV R ++ + R S ++ + +
Sbjct: 71 PLIYKASNQFEAILENVVVNPESRRVQWDDDSKTENTRSSYPIAHLENVVESGVAGHPRA 130
Query: 107 --WIAANTKECPKCLVTIEKDGGCNHMVC----------KNQSCKAEFCWVCLG----PW 150
+++A+ + + + + + + + C G P
Sbjct: 131 IFFLSADAYGVLPPIARLSPEEAMYYFLSGYTARVAGTERGVTEPRATFSACFGAPFLPM 190
Query: 151 EPHGSSWYSCNRYDEEEAKV 170
P + + + +V
Sbjct: 191 HPGVYARMLGEKIRKHAPRV 210
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 589
Score = 28.1 bits (62), Expect = 1.8
Identities = 18/158 (11%), Positives = 48/158 (30%), Gaps = 7/158 (4%)
Query: 159 SCNRYDEEEAKVARGAQERSRAALQRYLFYCNRYMNHMQSLKFEHKLYASVKEKMEEMQQ 218
+ Y E + + + L+ R+ + + + +
Sbjct: 257 ENDVYKYETSGIGEARVKEVLLDEDDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRMNTG 316
Query: 219 HNMSWIEVQFLKKAVDILCQCRQTLMYTYVFAYYLRKNNQSVLFE--DNQKDLESATEKL 276
+ ++ + K + + A K+ Q + + ++DL T+
Sbjct: 317 EKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQGTVDKLCRVEQDLAMGTDAE 376
Query: 277 SEYLERDITS--ENLANIKQQVQDKYRLVEIQLKYSYK 312
E ++ + + L + DK R++ L Y +
Sbjct: 377 GEKIKDPMRAIVPILLDANVSTYDKIRII---LLYIFL 411
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein
1 (RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 25.6 bits (56), Expect = 2.7
Identities = 7/18 (38%), Positives = 7/18 (38%)
Query: 65 PVVCKCGHRFCFACGENW 82
PV C H FC C
Sbjct: 36 PVETSCKHLFCRICILRC 53
>d1c6va_ c.55.3.2 (A:) Retroviral integrase, catalytic domain
{Simian immunodeficiency virus [TaxId: 11723]}
Length = 159
Score = 26.4 bits (57), Expect = 3.2
Identities = 9/99 (9%), Positives = 25/99 (25%), Gaps = 1/99 (1%)
Query: 94 WIKKCDDDSETSNWIAANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPH 153
+ + +T+ ++ P + + K + A P+ P
Sbjct: 33 EVIPQETGRQTALFLLKLAGRWPITHLHTDNGANFASQEVKMVAWWAGIEHTFGVPYNPQ 92
Query: 154 GSSWY-SCNRYDEEEAKVARGAQERSRAALQRYLFYCNR 191
+ N + + + R + + N
Sbjct: 93 SQGVVEAMNHHLKNQIDRIREQANSVETIVLMAVHCMNH 131
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 24.8 bits (53), Expect = 3.9
Identities = 8/37 (21%), Positives = 11/37 (29%)
Query: 114 ECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPW 150
+ P C + E+ G C CL W
Sbjct: 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTW 41
>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 194
Score = 26.1 bits (56), Expect = 5.1
Identities = 13/145 (8%), Positives = 28/145 (19%), Gaps = 11/145 (7%)
Query: 20 VRDPKVKLKYQHLITNSFVECN-RLLRWCPSPD---CNNAIKVQHVEARPVVCKCGHRFC 75
R + + + V+ + + + W +P N AI V G ++
Sbjct: 3 KRSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYI 62
Query: 76 FACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEKD-------GGC 128
A + + IK + + + G
Sbjct: 63 IAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPFLDRESLVINGDHVTTDAGTG 122
Query: 129 NHMVCKNQSCKAEFCWVCLGPWEPH 153
Sbjct: 123 CVHTAPGHGEDDYIVGQQYELPVIS 147
>d1j99a_ c.37.1.5 (A:) Hydroxysteroid sulfotransferase sult2a1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 26.0 bits (56), Expect = 6.3
Identities = 11/87 (12%), Positives = 27/87 (31%), Gaps = 3/87 (3%)
Query: 145 VCLGPWEPHGSSWYSCNRYDEEEAKVARGAQERSRAALQRYLFYCNRYMNHMQSLKFEHK 204
V G W H W ++ + +++ + + + +
Sbjct: 157 VLYGSWFDHIHGWMPMREEKNFLLLSYEELKQDTGRTIEKICQFLGKTLEPEELNLILKN 216
Query: 205 LYASVKEKMEEMQQHNMSWIEVQFLKK 231
S + M+E + N S + V ++
Sbjct: 217 ---SSFQSMKENKMSNYSLLSVDYVVD 240
>d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia
coli [TaxId: 562]}
Length = 208
Score = 26.0 bits (56), Expect = 6.3
Identities = 18/132 (13%), Positives = 37/132 (28%), Gaps = 2/132 (1%)
Query: 24 KVKLKYQHLITNSFVECNRLLRWCPSPDCNNAIKVQHVEARPVVCKCGHRFCFACGENWH 83
KVKL + + D N + + + + AR +
Sbjct: 36 KVKLDNHLISERMVAIRTAVPDATLIVDANESWRAEGLAARCQLLADLGVAMLEQPLPAQ 95
Query: 84 DPVR-CSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEF 142
D + + D+ T + + A + ++K GG + +A+
Sbjct: 96 DDAALENFIHPLPICADESCHTRSNLKALKGRYEMVNIKLDKTGGLTEALALATEARAQG 155
Query: 143 CWVCLG-PWEPH 153
+ LG
Sbjct: 156 FSLMLGCMLCTS 167
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta
subunit, PheT, central domain {Thermus thermophilus
[TaxId: 274]}
Length = 207
Score = 25.6 bits (55), Expect = 7.0
Identities = 18/150 (12%), Positives = 38/150 (25%), Gaps = 12/150 (8%)
Query: 18 RLVRDPKVKLKYQHLITNSFVECNRLLRWCPSPDCNNAIKVQ--HVEARPVV---CKCGH 72
+ +R+ L +Q + T SF++ R+ P + + + + G
Sbjct: 22 QRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPP---RLLLLNPLAPEKAALRTHLFPGL 78
Query: 73 RFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEKDGGCNHMV 132
+ P R L + + ET A + K+ + +
Sbjct: 79 VRVLKENLDLDRPERALLF-EVGRVFREREETHL---AGLLFGEGVGLPWAKERLSGYFL 134
Query: 133 CKNQSCKAEFCWVCLGPWEPHGSSWYSCNR 162
K E +
Sbjct: 135 LKGYLEALFARLGLAFRVEAQAFPFLHPGV 164
>d1texa_ c.37.1.5 (A:) Stf0 sulfotransferase {Mycobacterium
smegmatis [TaxId: 1772]}
Length = 265
Score = 25.9 bits (55), Expect = 7.6
Identities = 9/126 (7%), Positives = 27/126 (21%), Gaps = 12/126 (9%)
Query: 184 RYLFYCNRYMNHMQSLKFEHKLYASVKEKMEEMQQHNMSWIEVQFLKKAVDILCQCRQTL 243
H V + + + + D +
Sbjct: 119 GSGLLSAIRDVVGSDPVLIHIHRPDVVSQAVSFWRAVQTRVWRGRPDPVRDARAEYHAGA 178
Query: 244 MYTYVFAY---------YLRKNNQSVL---FEDNQKDLESATEKLSEYLERDITSENLAN 291
+ + + + N + + ++L + E L +D
Sbjct: 179 IAHVITMLRAQEEGWRAWFTEENVEPIDVDYPYLWRNLTEVVGTVLEALGQDPRLAPKPV 238
Query: 292 IKQQVQ 297
+++Q
Sbjct: 239 LERQAD 244
>d1vpqa_ c.1.32.1 (A:) Hypothetical protein TM1631 {Thermotoga
maritima [TaxId: 2336]}
Length = 260
Score = 25.7 bits (56), Expect = 7.8
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 150 WEPHGSSWYSCNRYDEEEAKVARGAQERSRAALQRYLFYCNRYMNHM 196
+E G Y +EE + E SR + Y+F+ N Y
Sbjct: 201 FEAEGEERYDYLYSEEELKTLFEDVVELSRRVKETYVFFNNCYKGQA 247
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 23.7 bits (51), Expect = 8.2
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 114 ECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPW 150
EC CL +E + C F C+ W
Sbjct: 7 ECAVCLAELEDGEEARFLPR----CGHGFHAECVDMW 39
>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO),
N-terminal domain {Desulfovibrio gigas [TaxId: 879]}
Length = 249
Score = 25.3 bits (54), Expect = 9.2
Identities = 7/85 (8%), Positives = 16/85 (18%), Gaps = 6/85 (7%)
Query: 83 HDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEF 142
+ L I+ C + ++ + E + F
Sbjct: 79 LELDHAGALPALIEACQPEKIFTSSLGQKAMESHFHYKDWPVQVVKHGETLSLGKRTVTF 138
Query: 143 CWVCLGPWEPHGSSWYSCNRYDEEE 167
S + +E
Sbjct: 139 YET------RMLHWPDSMVSWFADE 157
>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia
coli [TaxId: 562]}
Length = 197
Score = 25.1 bits (53), Expect = 9.3
Identities = 18/175 (10%), Positives = 48/175 (27%), Gaps = 16/175 (9%)
Query: 101 DSETSNWIAANTKECPKCLVTIEKD---GGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSW 157
D + + + A + L +++K G H + + F S
Sbjct: 13 DIDFNRVLGAWSDLTRIPLASLKKSFHMGEAFHQHERGEISDEAFAEALCHEMALPLSYE 72
Query: 158 YSCNRYDEEEAKVARGAQERSRAALQRYLFYCNRYMNHMQSLKFEHKLYASVKEKMEEMQ 217
+ + + ++ + F + Y +++ + +
Sbjct: 73 QFSHGWQAVFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIRDAADHIY 132
Query: 218 QHNMSWIEVQFLKKAVDILCQCRQTLMYTYVFAYYLRKNNQSVLFEDNQKDLESA 272
+ + +Y +V + +V F+DN ++E A
Sbjct: 133 LSQDLG-------------MRKPEARIYQHVLQAEGFSPSDTVFFDDNADNIEGA 174
>d1t0hb_ c.37.1.1 (B:) Guanylate kinase-like domain of the L-type
calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId:
9986]}
Length = 219
Score = 25.2 bits (55), Expect = 9.4
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 260 VLFEDNQKDLESATEKLSEYLE 281
V+ ++NQ LE A E L++YLE
Sbjct: 179 VILDENQ--LEDACEHLADYLE 198
>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 204
Score = 25.2 bits (53), Expect = 9.7
Identities = 18/163 (11%), Positives = 41/163 (25%), Gaps = 7/163 (4%)
Query: 144 WVCLGPWEPHGSSWYSCNRYDEEEAKVARGAQERSRAALQRYLFYCNRYMNHMQSLKFEH 203
++ + D E R + A + + +
Sbjct: 42 FIFKYSVQDLLVRVAEDRNLDVEVLNQVRAQSLAEKNAQVVLMPGAREVLAWADESGIQQ 101
Query: 204 KLYASVKEKMEEMQQHNMSWIEVQFLKKAVDILCQCRQTLMYTYVFAYYLRKNNQSVLFE 263
+Y + + + + + TY+ Y ++ +
Sbjct: 102 FIYTHKGNNAFTILKDLGVESYFTEILTSQSGFVRKPSPEAATYLLDKYQLNSDNTYYIG 161
Query: 264 DNQKDLESATEK-------LSEYLERDITSENLANIKQQVQDK 299
D D+E A L E + + LA+I + + K
Sbjct: 162 DRTLDVEFAQNSGIQSINFLESTYEGNHRIQALADISRIFETK 204
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.134 0.437
Gapped
Lambda K H
0.267 0.0441 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,245,367
Number of extensions: 60805
Number of successful extensions: 302
Number of sequences better than 10.0: 1
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 81
Length of query: 312
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 227
Effective length of database: 1,240,546
Effective search space: 281603942
Effective search space used: 281603942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.9 bits)