BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15976
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P8J|A Chain A, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|B Chain B, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|C Chain C, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|D Chain D, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|E Chain E, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|F Chain F, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|G Chain G, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|H Chain H, Crystal Structure Of The Proprotein Convertase Furin
Length = 471
Score = 266 bits (680), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 137/231 (59%), Positives = 163/231 (70%), Gaps = 5/231 (2%)
Query: 91 VTTTYSSGSSFEHQVVTTDLHHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHI 150
+ TTYSSG+ E Q+VTTDL CT +HTGTSASAPLAAGI AL LEAN LTWRDMQH+
Sbjct: 230 LATTYSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHL 289
Query: 151 VVATARPANLRAPDWATNGVGRNVSHSFGYGLMDATAMVRLARQWKTVPEQFKCEASP-S 209
VV T++PA+L A DWATNGVGR VSHS+GYGL+DA AMV LA+ W TV Q KC
Sbjct: 290 VVQTSKPAHLNADDWATNGVGRKVSHSYGYGLLDAGAMVALAQNWTTVAPQRKCIVEILV 349
Query: 210 EPSEMERPIPAKSSIRLKLDVTECPHVNYLEHVQARVTLSAHRRGDLQIVLVSPAGTRAT 269
EP ++ + + + ++ L E H+ LEHVQAR+TLS +RRGDL I L+SP GTR+T
Sbjct: 350 EPKDIGKRLEVRKAVTACLG--EPNHITRLEHVQARLTLSYNRRGDLAIHLISPMGTRST 407
Query: 270 LLATRPHDSSKAGFNAWPFMSVHSWGEQPFGSWYLEIHN--EGRYFGELTR 318
LLA RPHD S GFN W FM+ HSW E P G W LEI N E +G LT+
Sbjct: 408 LLAARPHDYSADGFNDWAFMTTHSWDEDPAGEWVLEIENTSEANNYGTLTK 458
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 46/58 (79%)
Query: 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPMPRYDQI 58
+NV+ AW +G TG G+V++ILDDG+EK+HPDL NYDP AS+DVN D DP PRY Q+
Sbjct: 25 LNVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYDPGASFDVNDQDPDPQPRYTQM 82
>pdb|2ID4|A Chain A, The 1.9 A Structure Of Kex2 In Complex With An
Ac-R-E-R-K-Chloromethyl Ketone Inhibitor.
pdb|2ID4|B Chain B, The 1.9 A Structure Of Kex2 In Complex With An
Ac-R-E-R-K-Chloromethyl Ketone Inhibitor
Length = 503
Score = 144 bits (362), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 122/226 (53%), Gaps = 17/226 (7%)
Query: 90 VVTTTYSSGSSFEHQVVTTDLHHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQH 149
V+ TYSSGS + ++D++ C+++H GTSA+APLAAG+ L LEANP LTWRD+Q+
Sbjct: 242 VMAVTYSSGSG--EYIHSSDINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQY 299
Query: 150 IVVATARPANLRAP-DWATNGVGRNVSHSFGYGLMDATAMVRLARQWKTV--------PE 200
+ + +A A DW + +G+ SH +G+G +DA ++ +++ W+ V P
Sbjct: 300 LSILSAVGLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIEMSKTWENVNAQTWFYLPT 359
Query: 201 QFKCEASPSEPSEMERPIPAKSSIRLKLDVTECPHVNYLEHVQARVTLSAHRRGDLQIVL 260
+ +++ S +E S I + + + +EHV V + RG + L
Sbjct: 360 LYVSQSTNSTEETLE------SVITISEKSLQDANFKRIEHVTVTVDIDTEIRGTTTVDL 413
Query: 261 VSPAGTRATLLATRPHDSSKAGFNAWPFMSVHSWGEQPFGSWYLEI 306
+SPAG + L RP D S GF W FMSV WGE G W +++
Sbjct: 414 ISPAGIISNLGVVRPRDVSSEGFKDWTFMSVAHWGENGVGDWKIKV 459
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPMPRYDQIFP 60
+NV W ITG GVV I+DDGL+ ++ DL N+ S+D N + + P PR
Sbjct: 41 INVLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFXAEGSWDFNDNTNLPKPR----LS 96
Query: 61 DLYH 64
D YH
Sbjct: 97 DDYH 100
>pdb|1R64|A Chain A, The 2.2 A Crystal Structure Of Kex2 Protease In Complex
With Ac-Arg- Glu-Lys-Boroarg Peptidyl Boronic Acid
Inhibitor
pdb|1R64|B Chain B, The 2.2 A Crystal Structure Of Kex2 Protease In Complex
With Ac-Arg- Glu-Lys-Boroarg Peptidyl Boronic Acid
Inhibitor
Length = 481
Score = 144 bits (362), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 122/226 (53%), Gaps = 17/226 (7%)
Query: 90 VVTTTYSSGSSFEHQVVTTDLHHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQH 149
V+ TYSSGS + ++D++ C+++H GTSA+APLAAG+ L LEANP LTWRD+Q+
Sbjct: 235 VMAVTYSSGSG--EYIHSSDINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQY 292
Query: 150 IVVATARPANLRAP-DWATNGVGRNVSHSFGYGLMDATAMVRLARQWKTV--------PE 200
+ + +A A DW + +G+ SH +G+G +DA ++ +++ W+ V P
Sbjct: 293 LSILSAVGLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIEMSKTWENVNAQTWFYLPT 352
Query: 201 QFKCEASPSEPSEMERPIPAKSSIRLKLDVTECPHVNYLEHVQARVTLSAHRRGDLQIVL 260
+ +++ S +E S I + + + +EHV V + RG + L
Sbjct: 353 LYVSQSTNSTEETLE------SVITISEKSLQDANFKRIEHVTVTVDIDTEIRGTTTVDL 406
Query: 261 VSPAGTRATLLATRPHDSSKAGFNAWPFMSVHSWGEQPFGSWYLEI 306
+SPAG + L RP D S GF W FMSV WGE G W +++
Sbjct: 407 ISPAGIISNLGVVRPRDVSSEGFKDWTFMSVAHWGENGVGDWKIKV 452
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPMPRYDQIFP 60
+NV W ITG GVV I+DDGL+ ++ DL N+ S+D N + + P PR
Sbjct: 34 INVLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCAEGSWDFNDNTNLPKPR----LS 89
Query: 61 DLYH 64
D YH
Sbjct: 90 DDYH 93
>pdb|1OT5|A Chain A, The 2.4 Angstrom Crystal Sructure Of Kex2 In Complex With
A Peptidyl- Boronic Acid Inhibitor
pdb|1OT5|B Chain B, The 2.4 Angstrom Crystal Sructure Of Kex2 In Complex With
A Peptidyl- Boronic Acid Inhibitor
Length = 477
Score = 144 bits (362), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 122/226 (53%), Gaps = 17/226 (7%)
Query: 90 VVTTTYSSGSSFEHQVVTTDLHHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQH 149
V+ TYSSGS + ++D++ C+++H GTSA+APLAAG+ L LEANP LTWRD+Q+
Sbjct: 233 VMAVTYSSGSG--EYIHSSDINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQY 290
Query: 150 IVVATARPANLRAP-DWATNGVGRNVSHSFGYGLMDATAMVRLARQWKTV--------PE 200
+ + +A A DW + +G+ SH +G+G +DA ++ +++ W+ V P
Sbjct: 291 LSILSAVGLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIEMSKTWENVNAQTWFYLPT 350
Query: 201 QFKCEASPSEPSEMERPIPAKSSIRLKLDVTECPHVNYLEHVQARVTLSAHRRGDLQIVL 260
+ +++ S +E S I + + + +EHV V + RG + L
Sbjct: 351 LYVSQSTNSTEETLE------SVITISEKSLQDANFKRIEHVTVTVDIDTEIRGTTTVDL 404
Query: 261 VSPAGTRATLLATRPHDSSKAGFNAWPFMSVHSWGEQPFGSWYLEI 306
+SPAG + L RP D S GF W FMSV WGE G W +++
Sbjct: 405 ISPAGIISNLGVVRPRDVSSEGFKDWTFMSVAHWGENGVGDWKIKV 450
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPMPRYDQIFP 60
+NV W ITG GVV I+DDGL+ ++ DL N+ S+D N + + P PR
Sbjct: 32 INVLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCAEGSWDFNDNTNLPKPR----LS 87
Query: 61 DLYH 64
D YH
Sbjct: 88 DDYH 91
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 100/240 (41%), Gaps = 49/240 (20%)
Query: 108 TDLHHDCTSN--HTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLR---- 161
+ L C N GTS++ P +G AL + A P L+ RD++ ++ +A + +
Sbjct: 320 SQLDASCDYNGVMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPV 379
Query: 162 ----------------APDWATNGVGRNVSHSFGYGLMDATAMVRLARQWKTVP------ 199
W N G S ++G+GL+D + LA + +P
Sbjct: 380 MVSYTSSTGKVRDVKGLEGWERNAAGMWFSPTYGFGLIDVNKALELAANHQPLPPLVQLP 439
Query: 200 -EQFKCEASPSEPSEMERPIPAKSSIRLKLDVTECPHVNYLEHVQARVTLSAHRRGDLQI 258
++ S + +++ P S+ R+ +T +E VQ V+L R DL I
Sbjct: 440 WQKINVTGSAAAIADVGNS-PTSSTTRIATPLT-------VEAVQVMVSLDHQRLPDLLI 491
Query: 259 VLVSPAGTRATLLA------TRPHDSSKAGF------NAWPFMSVHSWGEQPFGSWYLEI 306
LVSPAGTR+ LL+ + D + GF +S +GE G+W LE+
Sbjct: 492 ELVSPAGTRSILLSPFNSLVGQSLDQQQLGFVRTKGLRDMRMLSNKFYGESAQGTWRLEV 551
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDP 38
+N+ A G+ G+GV + ++DDGL HPDL N P
Sbjct: 57 LNLWWAHRTGVLGQGVNVAVVDDGLAIAHPDLADNVRP 94
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 9/58 (15%)
Query: 7 WEEGITGKGVVITILDDGLEKDHPDLIQN----YDPLASY----DVNSHDDDPMPRYD 56
W+ G TG+GVV++++D G+ DH DL N YD ++S D + D++P D
Sbjct: 26 WDRGFTGQGVVVSVVDTGI-LDHVDLNGNMLPGYDFISSAPNARDGDQRDNNPADEGD 82
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 9/58 (15%)
Query: 7 WEEGITGKGVVITILDDGLEKDHPDLIQN----YDPLAS----YDVNSHDDDPMPRYD 56
W+ G TG+GVV++++D G+ DH DL N YD ++S D + D++P D
Sbjct: 26 WDRGFTGQGVVVSVVDTGI-LDHVDLNGNMLPGYDFISSAPKARDGDQRDNNPADEGD 82
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 8 EEGITGKGVVITILDDGLEKDHPDL 32
EG TG V + ++D G++ HPDL
Sbjct: 18 SEGYTGSNVKVAVIDSGIDSSHPDL 42
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 13 GKGVVITILDDGLEKDHPDLIQN 35
G G+ I +LD G+ HPDL+ N
Sbjct: 25 GSGINIAVLDTGVNTSHPDLVNN 47
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 13 GKGVVITILDDGLEKDHPDLIQN 35
G G+ I +LD G+ HPDL+ N
Sbjct: 25 GSGINIAVLDTGVNTSHPDLVNN 47
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 13 GKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSH 47
G G+ I +LD G+ +HPDL N + + V ++
Sbjct: 25 GAGINIAVLDTGVNTNHPDLSNNVEQCKDFTVGTN 59
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 139 NPGLTWRDMQHIVVATARPANLRAPDWATNGVGRNVSHSFGYGLMDATAMVRLARQWKTV 198
N GLT + + + A A+LR D +NG+G GL+ + RL W
Sbjct: 204 NCGLTPANCKDLCGIVASQASLRELDLGSNGLGDAGIAELCPGLLSPAS--RLKTLWL-- 259
Query: 199 PEQFKCEASPSEPSEMERPIPAKSSIR 225
++C+ + S ++ R + AK +++
Sbjct: 260 ---WECDITASGCRDLCRVLQAKETLK 283
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 8 EEGITGKGVVITILDDGLEKDHPDL 32
+G TG V + ++D G++ HPDL
Sbjct: 18 SQGYTGSNVKVAVIDSGIDSSHPDL 42
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 8 EEGITGKGVVITILDDGLEKDHPDL 32
+G TG V + ++D G++ HPDL
Sbjct: 18 SQGYTGSNVKVAVIDSGIDSSHPDL 42
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 8 EEGITGKGVVITILDDGLEKDHPDL 32
+G TG V + ++D G++ HPDL
Sbjct: 18 SQGYTGSNVKVAVIDSGIDSSHPDL 42
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 8 EEGITGKGVVITILDDGLEKDHPDL 32
+G TG V + ++D G++ HPDL
Sbjct: 18 SQGYTGSNVKVAVIDSGIDSSHPDL 42
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 8 EEGITGKGVVITILDDGLEKDHPDL 32
+G TG V + ++D G++ HPDL
Sbjct: 18 SQGYTGSNVKVAVIDSGIDSSHPDL 42
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 8 EEGITGKGVVITILDDGLEKDHPDL 32
+G TG V + ++D G++ HPDL
Sbjct: 18 SQGYTGSNVKVAVIDSGIDSSHPDL 42
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 8 EEGITGKGVVITILDDGLEKDHPDL 32
+G TG V + ++D G++ HPDL
Sbjct: 18 SQGYTGSNVKVAVIDSGIDSSHPDL 42
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 8 EEGITGKGVVITILDDGLEKDHPDL 32
+G TG V + ++D G++ HPDL
Sbjct: 18 SQGYTGSNVKVAVIDSGIDSSHPDL 42
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 8 EEGITGKGVVITILDDGLEKDHPDL 32
+G TG V + ++D G++ HPDL
Sbjct: 18 SQGYTGSNVKVAVIDSGIDSSHPDL 42
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 8 EEGITGKGVVITILDDGLEKDHPDL 32
+G TG V + ++D G++ HPDL
Sbjct: 18 SQGYTGSNVKVAVIDSGIDSSHPDL 42
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 8 EEGITGKGVVITILDDGLEKDHPDL 32
+G TG V + ++D G++ HPDL
Sbjct: 18 SQGYTGSNVKVAVIDSGIDSSHPDL 42
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 8 EEGITGKGVVITILDDGLEKDHPDL 32
+G TG V + ++D G++ HPDL
Sbjct: 18 SQGYTGSNVKVAVIDSGIDSSHPDL 42
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 8 EEGITGKGVVITILDDGLEKDHPDL 32
+G TG V + ++D G++ HPDL
Sbjct: 18 SQGYTGSNVKVAVIDSGIDSSHPDL 42
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s)
Length = 275
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 8 EEGITGKGVVITILDDGLEKDHPDL 32
+G TG V + ++D G++ HPDL
Sbjct: 18 SQGYTGSNVKVAVIDSGIDSSHPDL 42
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 8 EEGITGKGVVITILDDGLEKDHPDL 32
+G TG V + ++D G++ HPDL
Sbjct: 18 SQGYTGSNVKVAVIDSGIDSSHPDL 42
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 8 EEGITGKGVVITILDDGLEKDHPDL 32
+G TG V + ++D G++ HPDL
Sbjct: 18 SQGYTGSNVKVAVIDSGIDSSHPDL 42
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 8 EEGITGKGVVITILDDGLEKDHPDL 32
+G TG V + ++D G++ HPDL
Sbjct: 18 SQGYTGSNVKVAVIDSGIDSSHPDL 42
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 8 EEGITGKGVVITILDDGLEKDHPDL 32
+G TG V + ++D G++ HPDL
Sbjct: 18 SQGYTGSNVKVAVIDSGIDSSHPDL 42
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 8 EEGITGKGVVITILDDGLEKDHPDL 32
+G TG V + ++D G++ HPDL
Sbjct: 18 SQGYTGSNVKVAVIDSGIDSSHPDL 42
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 7 WEEGITGKGVVITILDDGLEKDHPDLIQ 34
W G G +I ++D G + DHPDL +
Sbjct: 34 WRASAKGAGQIIGVIDTGCQVDHPDLAE 61
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 7 WEEGITGKGVVITILDDGLEKDHPDLIQ 34
W G G +I ++D G + DHPDL +
Sbjct: 34 WRASAKGAGQIIGVIDTGCQVDHPDLAE 61
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 7 WEEGITGKGVVITILDDGLEKDHPDLIQ 34
W G G +I ++D G + DHPDL +
Sbjct: 16 WRASAKGAGQIIGVIDTGCQVDHPDLAE 43
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 7 WEEGITGKGVVITILDDGLEKDHPDLIQN----YDPLA----SYDVNSHDDDPMPRYD 56
W+ G TG+ VV+ ++D G+ H DL N YD ++ S D + D DP D
Sbjct: 25 WDMGFTGQNVVVAVVDTGILH-HRDLNANVLPGYDFISNSQISLDGDGRDADPFDEGD 81
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 7 WEEGITGKGVVITILDDGLEKDHPDLIQN----YDPLA----SYDVNSHDDDPMPRYD 56
W+ G TG+ VV+ ++D G+ H DL N YD ++ S D + D DP D
Sbjct: 25 WDMGFTGQNVVVAVVDTGILH-HRDLNANVLPGYDFISNSQISLDGDGRDADPFDEGD 81
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered
Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine
Protease-Bacillus Lentus Subtilisin
Length = 269
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 6 AWEEGITGKGVVITILDDGLEKDHPDL 32
A G+TG GV + +LD G+ HPDL
Sbjct: 16 AHNRGLTGSGVKVAVLDTGIST-HPDL 41
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 7 WEEGITGKGVVITILDDGLEKDHPDLIQN----YDPLA----SYDVNSHDDDPMPRYD 56
W+ G TG+ VV+ ++D G+ H DL N YD ++ S D + D DP D
Sbjct: 25 WDMGFTGQNVVVAVVDTGILH-HRDLNANVLPGYDFISNSQISLDGDGRDADPFDEGD 81
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 7 WEEGITGKGVVITILDDGLEKDHPDLIQ 34
W G G +I ++D G + DHPDL +
Sbjct: 34 WRASAKGAGQIIGVIDTGXQVDHPDLAE 61
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 9 EGITGKGVVITILDDGLEKDHPDL 32
+G G V + +LD G++ HPDL
Sbjct: 19 QGFKGANVKVAVLDTGIQASHPDL 42
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 9 EGITGKGVVITILDDGLEKDHPDL 32
+G G V + +LD G++ HPDL
Sbjct: 19 QGFKGANVKVAVLDTGIQASHPDL 42
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus
Sermetstatin In Complex With Bacillus Licheniformis
Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus
Sermetstatin In Complex With Bacillus Licheniformis
Subtilisin
Length = 274
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 9 EGITGKGVVITILDDGLEKDHPDL 32
+G G V + +LD G++ HPDL
Sbjct: 19 QGFKGANVKVAVLDTGIQASHPDL 42
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The
Complex Formed Between Subtilisin Carlsberg And Eglin
C, An Elastase Inhibitor From The Leech Hirudo
Medicinalis. Structural Analysis, Subtilisin Structure
And Interface Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 9 EGITGKGVVITILDDGLEKDHPDL 32
+G G V + +LD G++ HPDL
Sbjct: 19 QGFKGANVKVAVLDTGIQASHPDL 42
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 6 AWEEGITGKGVVITILDDGLEKDHPDL 32
A G+TG GV + +LD G+ HPDL
Sbjct: 16 AHNRGLTGSGVKVAVLDTGIST-HPDL 41
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 9 EGITGKGVVITILDDGLEKDHPDL 32
+G G V + +LD G++ HPDL
Sbjct: 20 QGFKGANVKVAVLDTGIQASHPDL 43
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 6 AWEEGITGKGVVITILDDGLEKDHPDL 32
A G+TG GV + +LD G+ HPDL
Sbjct: 16 AHNRGLTGSGVKVAVLDTGIST-HPDL 41
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 6 AWEEGITGKGVVITILDDGLEKDHPDL 32
A G+TG GV + +LD G+ HPDL
Sbjct: 16 AHNRGLTGSGVKVAVLDTGIST-HPDL 41
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 9 EGITGKGVVITILDDGLEKDHPDL 32
+G G V + +LD G++ HPDL
Sbjct: 20 QGFKGANVKVAVLDTGIQASHPDL 43
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 9 EGITGKGVVITILDDGLEKDHPDL 32
+G G V + +LD G++ HPDL
Sbjct: 19 QGFKGANVKVAVLDTGIQASHPDL 42
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 6 AWEEGITGKGVVITILDDGLEKDHPDL 32
A G+TG GV + +LD G+ HPDL
Sbjct: 16 AHNRGLTGSGVKVAVLDTGIST-HPDL 41
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 6 AWEEGITGKGVVITILDDGLEKDHPDL 32
A G+TG GV + +LD G+ HPDL
Sbjct: 16 AHNRGLTGSGVKVAVLDTGIST-HPDL 41
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 6 AWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPM 52
AW+ G I ++D G++ HPDL + + YD +D DPM
Sbjct: 23 AWDVTKGSSGQEIAVIDTGVDYTHPDL--DGKVIKGYDFVDNDYDPM 67
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 6 AWEEGITGKGVVITILDDGLEKDHPDL 32
A G+TG GV + +LD G+ HPDL
Sbjct: 16 AHNRGLTGSGVKVAVLDTGIST-HPDL 41
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 6 AWEEGITGKGVVITILDDGLEKDHPDL 32
A G+TG GV + +LD G+ HPDL
Sbjct: 16 AHNRGLTGSGVKVAVLDTGIST-HPDL 41
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A
Variant
Length = 269
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 6 AWEEGITGKGVVITILDDGLEKDHPDL 32
A G+TG GV + +LD G+ HPDL
Sbjct: 16 AHNRGLTGSGVRVAVLDTGIST-HPDL 41
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 6 AWEEGITGKGVVITILDDGLEKDHPDL 32
A G+TG GV + +LD G+ HPDL
Sbjct: 16 AHNRGLTGSGVRVAVLDTGIST-HPDL 41
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 19/103 (18%)
Query: 141 GLTWRDMQHIVVATARPANLRAPDWATNGVGRNVSHSFGY-GLMDATAMVRLARQ----- 194
G TW + ++ A+ + APD G+G++ GY G A + +LARQ
Sbjct: 40 GQTWYEWHQLMPELAKRFTVIAPD--LPGLGQSEPPKTGYSGEQVAVYLHKLARQFSPDR 97
Query: 195 -----------WKTVPEQFKCEASPSEPSEMERPIPAKSSIRL 226
W T P K +A + ME PIP R
Sbjct: 98 PFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAPIPDARIYRF 140
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 19/103 (18%)
Query: 141 GLTWRDMQHIVVATARPANLRAPDWATNGVGRNVSHSFGY-GLMDATAMVRLARQ----- 194
G TW + ++ A+ + APD G+G++ GY G A + +LARQ
Sbjct: 40 GQTWYEWHQLMPELAKRFTVIAPD--LPGLGQSEPPKTGYSGEQVAVYLHKLARQFSPDR 97
Query: 195 -----------WKTVPEQFKCEASPSEPSEMERPIPAKSSIRL 226
W T P K +A + ME PIP R
Sbjct: 98 PFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAPIPDARIYRF 140
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 19/103 (18%)
Query: 141 GLTWRDMQHIVVATARPANLRAPDWATNGVGRNVSHSFGY-GLMDATAMVRLARQ----- 194
G TW + ++ A+ + APD G+G++ GY G A + +LARQ
Sbjct: 40 GQTWYEWHQLMPELAKRFTVIAPD--LPGLGQSEPPKTGYSGEQVAVYLHKLARQFSPDR 97
Query: 195 -----------WKTVPEQFKCEASPSEPSEMERPIPAKSSIRL 226
W T P K +A + ME PIP R
Sbjct: 98 PFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAPIPDARIYRF 140
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With
A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph
4.6. Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 8 EEGITGKGVVITILDDGLEKDHPDL 32
+G TG V + +++ G++ HPDL
Sbjct: 18 SQGYTGSNVKVAVINSGIDSSHPDL 42
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 13 GKGVVITILDDGLEKDHPDL 32
G G I I+D G++ +HPDL
Sbjct: 29 GSGAKIAIVDTGVQSNHPDL 48
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of
Molecular Dynamics. The Thermostable Serine Protease
Thermitase Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies
Of Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 13 GKGVVITILDDGLEKDHPDL 32
G G I I+D G++ +HPDL
Sbjct: 29 GSGAKIAIVDTGVQSNHPDL 48
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 4 QGAWEEGITGKGVVITILDDGLEKDHPDL----IQNYDP 38
Q WEE +G +++ ++D G++ HPDL I Y P
Sbjct: 145 QQLWEEA-SGTNIIVAVVDTGVDGTHPDLEGQVIAGYRP 182
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 8 EEGITGKGVVITILDDGLEKDHPDL 32
+G TG V + +L G++ HPDL
Sbjct: 18 SQGYTGSNVKVAVLASGIDSSHPDL 42
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 8 EEGITGKGVVITILDDGLEKDHPDL 32
+G TG V + +L G++ HPDL
Sbjct: 18 SQGYTGSNVKVAVLASGIDSSHPDL 42
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 8 EEGITGKGVVITILDDGLEKDHPDL 32
+G G V + ++D G++ HPDL
Sbjct: 18 SQGYCGSNVKVAVIDSGIDSSHPDL 42
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 8 EEGITGKGVVITILDDGLEKDHPDL 32
+G G V + ++D G++ HPDL
Sbjct: 18 SQGYCGSNVKVAVIDSGIDSSHPDL 42
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 8 EEGITGKGVVITILDDGLEKDHPDL 32
+G G V + ++D G++ HPDL
Sbjct: 18 SQGYCGSNVKVAVIDSGIDSSHPDL 42
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 95 YSSGSSFEHQVVTTDLHHDCTSNHTGTSASAPLAAGICALALEANPGLT 143
Y+ GSS T+ + T+ +GTS ++P AG+ AL L+ NP L+
Sbjct: 200 YAPGSSITSSWYTS---NSATNTISGTSMASPHVAGVAALYLDENPNLS 245
>pdb|1QLR|B Chain B, Crystal Structure Of The Fab Fragment Of A Human
Monoclonal Igm Cold Agglutinin
pdb|1QLR|D Chain D, Crystal Structure Of The Fab Fragment Of A Human
Monoclonal Igm Cold Agglutinin
Length = 232
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 237 NYLEHVQARVTLS---AHRRGDLQIVLVSPAGTRATLLATRPHDSSKAGFNAW 286
NY +++RVT+S + + L++ V+ A T A PHD+S +N W
Sbjct: 58 NYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARPPHDTSGHYWNYW 110
>pdb|1DN0|B Chain B, Structure Of The Fab Fragment From A Human Igm Cold
Agglutinin
pdb|1DN0|D Chain D, Structure Of The Fab Fragment From A Human Igm Cold
Agglutinin
Length = 232
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 237 NYLEHVQARVTLS---AHRRGDLQIVLVSPAGTRATLLATRPHDSSKAGFNAW 286
NY +++RVT+S + + L++ V+ A T A PHD+S +N W
Sbjct: 58 NYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARPPHDTSGHYWNYW 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,732,355
Number of Sequences: 62578
Number of extensions: 468717
Number of successful extensions: 1999
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1885
Number of HSP's gapped (non-prelim): 131
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)