Query psy15976
Match_columns 319
No_of_seqs 282 out of 1999
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 17:49:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15976.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15976hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3526|consensus 100.0 1.7E-67 3.6E-72 483.7 15.9 313 1-316 148-587 (629)
2 KOG3525|consensus 100.0 8.7E-44 1.9E-48 344.9 16.7 295 1-311 20-429 (431)
3 cd07489 Peptidases_S8_5 Peptid 99.9 1.8E-27 3.9E-32 223.7 14.2 94 101-196 209-304 (312)
4 PTZ00262 subtilisin-like prote 99.9 1.2E-26 2.5E-31 231.4 15.9 84 100-197 536-620 (639)
5 cd04059 Peptidases_S8_Protein_ 99.9 4.5E-26 9.8E-31 212.4 14.7 156 1-156 26-297 (297)
6 cd05562 Peptidases_S53_like Pe 99.9 3.7E-24 8E-29 198.0 12.7 68 112-190 207-274 (275)
7 cd07475 Peptidases_S8_C5a_Pept 99.9 1.9E-23 4.2E-28 198.9 13.2 83 101-190 255-346 (346)
8 cd07474 Peptidases_S8_subtilis 99.9 5.8E-23 1.3E-27 191.2 12.7 81 101-188 214-295 (295)
9 cd07479 Peptidases_S8_SKI-1_li 99.9 7.1E-23 1.5E-27 187.5 11.8 57 101-158 193-253 (255)
10 cd07483 Peptidases_S8_Subtilis 99.9 5E-22 1.1E-26 185.3 11.5 55 101-156 237-291 (291)
11 cd04852 Peptidases_S8_3 Peptid 99.9 1E-21 2.2E-26 184.4 11.2 56 101-156 243-307 (307)
12 cd04843 Peptidases_S8_11 Pepti 99.9 2.3E-21 5E-26 179.6 13.3 65 92-156 193-277 (277)
13 cd07494 Peptidases_S8_10 Pepti 99.9 5.1E-21 1.1E-25 179.0 14.9 49 112-160 239-287 (298)
14 cd07476 Peptidases_S8_thiazoli 99.9 2.1E-21 4.5E-26 179.0 11.8 60 101-161 192-255 (267)
15 cd07484 Peptidases_S8_Thermita 99.9 3.4E-21 7.3E-26 176.3 12.7 152 1-158 16-259 (260)
16 cd04077 Peptidases_S8_PCSK9_Pr 99.9 3E-21 6.4E-26 176.3 11.9 147 6-157 17-255 (255)
17 PF01483 P_proprotein: Proprot 99.9 9.7E-22 2.1E-26 151.0 6.6 79 239-317 1-81 (87)
18 cd07485 Peptidases_S8_Fervidol 99.8 4.7E-21 1E-25 176.9 11.3 54 101-154 213-273 (273)
19 cd05561 Peptidases_S8_4 Peptid 99.8 8.4E-21 1.8E-25 172.2 11.2 68 101-181 172-239 (239)
20 cd07481 Peptidases_S8_Bacillop 99.8 1.6E-20 3.5E-25 172.5 12.8 55 101-156 208-264 (264)
21 cd07497 Peptidases_S8_14 Pepti 99.8 2.3E-20 5.1E-25 175.4 12.2 42 114-155 264-311 (311)
22 cd07493 Peptidases_S8_9 Peptid 99.8 4.7E-20 1E-24 169.1 11.3 54 102-156 208-261 (261)
23 cd07492 Peptidases_S8_8 Peptid 99.8 6.3E-20 1.4E-24 164.2 11.6 55 101-156 168-222 (222)
24 cd07480 Peptidases_S8_12 Pepti 99.8 6.2E-20 1.3E-24 171.5 11.3 53 101-154 218-270 (297)
25 cd04848 Peptidases_S8_Autotran 99.8 4.3E-19 9.4E-24 161.8 12.0 56 101-156 211-267 (267)
26 cd07490 Peptidases_S8_6 Peptid 99.8 4.8E-19 1E-23 161.4 11.5 56 101-156 196-254 (254)
27 cd07487 Peptidases_S8_1 Peptid 99.8 8.7E-19 1.9E-23 160.2 12.5 56 101-156 201-264 (264)
28 cd07473 Peptidases_S8_Subtilis 99.8 1.5E-18 3.2E-23 158.6 11.7 55 101-156 205-259 (259)
29 cd07496 Peptidases_S8_13 Pepti 99.8 1.8E-18 3.8E-23 160.7 11.7 42 113-154 244-285 (285)
30 PF00082 Peptidase_S8: Subtila 99.8 7.6E-19 1.6E-23 161.9 7.2 69 114-190 214-282 (282)
31 cd04842 Peptidases_S8_Kp43_pro 99.8 2.4E-18 5.3E-23 159.8 10.3 56 101-156 222-293 (293)
32 cd07498 Peptidases_S8_15 Pepti 99.8 4.8E-18 1.1E-22 153.8 11.4 43 112-154 200-242 (242)
33 cd07478 Peptidases_S8_CspA-lik 99.8 5E-18 1.1E-22 167.4 11.9 70 101-181 380-455 (455)
34 COG4935 Regulatory P domain of 99.7 8.5E-18 1.8E-22 141.6 9.6 104 213-317 12-118 (177)
35 cd07477 Peptidases_S8_Subtilis 99.7 1.6E-17 3.5E-22 148.8 11.3 53 101-154 177-229 (229)
36 cd04847 Peptidases_S8_Subtilis 99.7 2.1E-17 4.6E-22 153.9 10.6 45 112-156 247-291 (291)
37 cd07491 Peptidases_S8_7 Peptid 99.7 4.7E-17 1E-21 148.4 9.6 38 101-138 190-229 (247)
38 cd07482 Peptidases_S8_Lantibio 99.7 8.3E-17 1.8E-21 149.5 11.1 43 112-154 251-294 (294)
39 KOG4266|consensus 99.7 1.4E-16 3E-21 155.3 12.0 82 104-198 388-473 (1033)
40 cd04857 Peptidases_S8_Tripepti 99.6 3.6E-15 7.7E-20 144.2 12.0 57 101-157 350-411 (412)
41 KOG1153|consensus 99.5 9E-14 2E-18 131.8 7.3 91 69-159 355-464 (501)
42 cd00306 Peptidases_S8_S53 Pept 99.4 1E-12 2.2E-17 116.8 11.2 43 112-154 199-241 (241)
43 KOG1114|consensus 99.2 4E-11 8.7E-16 122.1 8.7 69 115-195 490-562 (1304)
44 COG1404 AprE Subtilisin-like s 99.0 2.3E-09 5E-14 105.0 11.0 44 114-157 354-398 (508)
45 cd07488 Peptidases_S8_2 Peptid 98.9 2.5E-09 5.4E-14 97.6 4.9 50 101-153 190-239 (247)
46 COG4934 Predicted protease [Po 97.0 0.00091 2E-08 71.7 5.7 22 117-138 475-496 (1174)
47 cd04056 Peptidases_S53 Peptida 96.3 0.004 8.6E-08 60.0 3.9 27 114-140 273-299 (361)
48 cd07478 Peptidases_S8_CspA-lik 88.1 3.8 8.3E-05 40.8 9.9 24 11-34 1-24 (455)
49 PF12975 DUF3859: Domain of un 77.0 5.4 0.00012 32.5 4.9 58 244-311 59-116 (125)
50 PF09315 DUF1973: Domain of un 75.4 11 0.00023 32.8 6.7 55 247-310 34-88 (179)
51 PF01835 A2M_N: MG2 domain; I 69.3 18 0.00039 27.4 6.1 53 251-308 33-85 (99)
52 COG2166 sufE Cysteine desulfur 56.5 11 0.00024 31.5 2.8 31 117-148 73-103 (144)
53 PF13940 Ldr_toxin: Toxin Ldr, 54.8 11 0.00024 23.2 1.9 14 123-136 14-27 (35)
54 PRK15019 CsdA-binding activato 53.2 14 0.00031 31.0 3.0 31 118-149 79-109 (147)
55 smart00557 IG_FLMN Filamin-typ 52.8 77 0.0017 23.8 6.9 50 252-311 30-79 (93)
56 TIGR03391 FeS_syn_CsdE cystein 51.2 16 0.00035 30.3 3.0 32 118-150 74-105 (138)
57 PRK09296 cysteine desufuration 46.5 21 0.00046 29.6 3.0 32 117-149 68-99 (138)
58 PF02657 SufE: Fe-S metabolism 45.5 23 0.0005 28.8 3.1 31 118-149 60-90 (125)
59 PF11141 DUF2914: Protein of u 36.7 42 0.00092 24.0 3.0 20 290-309 34-53 (66)
60 PF07492 Trehalase_Ca-bi: Neut 31.2 43 0.00094 20.2 1.8 18 295-312 7-24 (30)
61 PF13955 Fst_toxin: Toxin Fst, 31.0 37 0.00079 18.7 1.4 17 122-138 3-19 (21)
62 PF04255 DUF433: Protein of un 29.2 54 0.0012 22.5 2.4 35 118-152 14-54 (56)
63 PF11903 DUF3423: Protein of u 28.1 78 0.0017 23.2 3.2 28 132-159 35-62 (72)
64 PF10989 DUF2808: Protein of u 27.3 79 0.0017 26.2 3.6 53 252-306 87-146 (146)
65 smart00546 CUE Domain that may 23.7 1.3E+02 0.0029 19.0 3.4 25 131-155 5-29 (43)
66 PF02845 CUE: CUE domain; Int 23.1 96 0.0021 19.7 2.6 24 132-155 5-28 (42)
67 PF10670 DUF4198: Domain of un 22.7 2.6E+02 0.0057 23.9 6.2 33 240-272 19-56 (215)
68 PF04151 PPC: Bacterial pre-pe 22.5 2.8E+02 0.006 19.3 5.5 55 244-307 15-69 (70)
69 PF06242 DUF1013: Protein of u 21.7 86 0.0019 25.9 2.6 61 131-193 73-138 (140)
70 PF15363 DUF4596: Domain of un 21.6 90 0.002 20.6 2.1 11 295-305 30-40 (46)
71 cd02854 Glycogen_branching_enz 21.3 2.2E+02 0.0047 21.9 4.8 44 255-308 6-49 (99)
72 TIGR00868 hCaCC calcium-activa 20.6 2.3E+02 0.0051 30.8 6.2 51 249-309 522-572 (863)
73 PF14326 DUF4384: Domain of un 20.6 2.4E+02 0.0051 20.7 4.7 30 244-273 9-38 (83)
No 1
>KOG3526|consensus
Probab=100.00 E-value=1.7e-67 Score=483.68 Aligned_cols=313 Identities=46% Similarity=0.806 Sum_probs=283.0
Q ss_pred CCcHHHHhcCCCCCCcEEEEecCCCCCCCcccccCCCCCcceecCCCCCCCCCCCCCCcccc------------------
Q psy15976 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPMPRYDQIFPDL------------------ 62 (319)
Q Consensus 1 inv~~aW~~g~tG~GV~VAVIDtGid~~HpdL~~~~~~~~~~d~~~~~~~~~p~~~~~~~~~------------------ 62 (319)
|||.+||++||||++|++||+|+||||.||||+.||...++|||..+|+.|+|+|.++..+.
T Consensus 148 lnv~~awa~g~tgknvttaimddgvdymhpdlk~nynaeasydfssndpfpyprytddwfnshgtrcagev~aardngic 227 (629)
T KOG3526|consen 148 LNVAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSNYNAEASYDFSSNDPFPYPRYTDDWFNSHGTRCAGEVVAARDNGIC 227 (629)
T ss_pred ccHHHHHhhcccCCCceEEeecCCchhcCcchhcccCceeecccccCCCCCCCcccchhhhccCccccceeeeeccCCce
Confidence 69999999999999999999999999999999999999999999999999999998754321
Q ss_pred -----------------------------ccccCCcccEEeCC--CCC--------------------------------
Q psy15976 63 -----------------------------YHLEHKHVAKRSAD--PSH-------------------------------- 79 (319)
Q Consensus 63 -----------------------------~~~~~~~i~i~s~s--P~d-------------------------------- 79 (319)
++..|+.|+||++| |.|
T Consensus 228 gvgvaydskvagirmldqpymtdlieansmghep~kihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyv 307 (629)
T KOG3526|consen 228 GVGVAYDSKVAGIRMLDQPYMTDLIEANSMGHEPSKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYV 307 (629)
T ss_pred eeeeeeccccceeeecCCchhhhhhhhcccCCCCceEEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEE
Confidence 66788999999999 766
Q ss_pred -------------------Ccceeeec---------------CCceeeeecCCCC-CCCceEecccCCCeeccCCCCcch
Q psy15976 80 -------------------HHHTRLIS---------------EPVVTTTYSSGSS-FEHQVVTTDLHHDCTSNHTGTSAS 124 (319)
Q Consensus 80 -------------------~~~~isvg---------------~~~~~~~~s~g~~-~g~~i~st~~~~~~~~~~sGTS~A 124 (319)
++++||+. +++++++||+|.. |..++.+||+.+.|+.+.||||+|
T Consensus 308 wasgdgge~ddcncdgyaasmwtisinsaindg~nahydescsstlastfsng~rnpetgvattdlyg~ct~~hsgtsaa 387 (629)
T KOG3526|consen 308 WASGDGGEDDDCNCDGYAASMWTISINSAINDGENAHYDESCSSTLASTFSNGGRNPETGVATTDLYGRCTRSHSGTSAA 387 (629)
T ss_pred EecCCCCCccccCCccchhheEEEEeehhhcCCccccccchhhHHHHHHhhcCCcCCCcceeeeccccceecccCCcccc
Confidence 66666666 7889999999865 677999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCC----CCCcccCCCCCcccCcceeeecCHHHHHHHHhccCccCc
Q psy15976 125 APLAAGICALALEANPGLTWRDMQHIVVATARPANLR----APDWATNGVGRNVSHSFGYGLMDATAMVRLARQWKTVPE 200 (319)
Q Consensus 125 aP~vaG~~AL~l~~~p~lt~~~v~~~l~~ta~~~~~~----~~~~~~~~~g~~~~~~~G~G~vda~~av~~a~~~~~~~~ 200 (319)
||-+|||.||.|++||.|||||+|++-..|+.++.+- ...|+-|+.|+.|++.||||.+||.++|.+|+.|+++||
T Consensus 388 apeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnhlfgfgvldagamv~lak~wktvpp 467 (629)
T KOG3526|consen 388 APEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLFGFGVLDAGAMVMLAKAWKTVPP 467 (629)
T ss_pred CccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccccceeeecccccccccHHHHHHHHHHhccCCC
Confidence 9999999999999999999999999999999877543 346788999999999999999999999999999999999
Q ss_pred ceeeecCCCCCCCCccccCCCCceEEEEeeccCCC----ccceeeEEEEEEEeecCCCceEEEEECCCCCeeEecccCCC
Q psy15976 201 QFKCEASPSEPSEMERPIPAKSSIRLKLDVTECPH----VNYLEHVQARVTLSAHRRGDLQIVLVSPAGTRATLLATRPH 276 (319)
Q Consensus 201 ~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~----~~~~e~v~v~v~i~h~~~gdl~i~L~SP~GT~s~l~~~~~~ 276 (319)
++.|+.... ..+..||..+.+-+.|+...|.+ ++++||||..|+....+||||.+.|+||+||++.|+..|+.
T Consensus 468 ryhc~ag~i---~~p~~ip~~g~l~lei~tdac~g~~~evrylehvqavis~natrrgdl~l~ltspmgtksmilsrrp~ 544 (629)
T KOG3526|consen 468 RYHCTAGLI---DTPHEIPADGNLILEINTDACAGSQFEVRYLEHVQAVISFNATRRGDLTLYLTSPMGTKSMILSRRPK 544 (629)
T ss_pred ceeeccccc---CCcccccCCCcEEEEEecccccCchhhHHHHHhhheeeEeccccccceeEEEecCCCceeeEeecCCC
Confidence 999986543 56788999999999999999987 67999999999999999999999999999999999999988
Q ss_pred C-CCCCCcccceeeeccccCCCCCccEEEEEEECCc--ccccc
Q psy15976 277 D-SSKAGFNAWPFMSVHSWGEQPFGSWYLEIHNEGR--YFGEL 316 (319)
Q Consensus 277 d-~~~~~~~~~~f~s~~f~gE~~~G~W~l~i~d~~~--~~~~~ 316 (319)
| ++.+||.+|+||+.+.|||+|+|+|+|+....++ ..|.|
T Consensus 545 dddskdgftkwpfmtthtwge~p~gtw~learf~gp~~~~g~l 587 (629)
T KOG3526|consen 545 DDDSKDGFTKWPFMTTHTWGENPTGTWRLEARFQGPGAHAGTL 587 (629)
T ss_pred CcccccccccCceeeecccCcCCCceEEEEEeccCCcccccch
Confidence 6 5789999999999999999999999999887655 35544
No 2
>KOG3525|consensus
Probab=100.00 E-value=8.7e-44 Score=344.91 Aligned_cols=295 Identities=53% Similarity=0.850 Sum_probs=259.8
Q ss_pred CCcHHHHhcCCCCCCcEEEEecCCCCCCCcccccCCCCCcceecCCCCCCCCCCCCCC--cccc----------------
Q psy15976 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPMPRYDQI--FPDL---------------- 62 (319)
Q Consensus 1 inv~~aW~~g~tG~GV~VAVIDtGid~~HpdL~~~~~~~~~~d~~~~~~~~~p~~~~~--~~~~---------------- 62 (319)
||+..+|..+++|++|.|+|+|+|++..||++..++.+..+||++.++.+|.|..+.. ..++
T Consensus 20 ~~v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~~~~~~s~d~~~~~~~p~~~~~~~~~~~~g~~Ca~~~a~~~~~~~C 99 (431)
T KOG3525|consen 20 LNVQNAWCKGYTGTRVSVTILDDGLECSHPDLRNNYDPLGSYDVNRHDNDPEPRCDGTNENKHGTRCAGCVAARANNLTC 99 (431)
T ss_pred ceeeeccccCCCCCceEEEEeeccccccCcccccccCcceeEeeecCCCCcccccCCCCccccCCCCCcccccccCCCcC
Confidence 6889999999999999999999999999999999999999999999999998887663 2222
Q ss_pred ----------------------------ccccCCcccEEeCC--CCC---------------------------------
Q psy15976 63 ----------------------------YHLEHKHVAKRSAD--PSH--------------------------------- 79 (319)
Q Consensus 63 ----------------------------~~~~~~~i~i~s~s--P~d--------------------------------- 79 (319)
+.+.+..++||++| |+|
T Consensus 100 ~vg~~~~~~~~g~~~l~~~v~~~~~~~~~~~~~~~~di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~ 179 (431)
T KOG3525|consen 100 GVGVAYNATIGGIRMLAGCVSDAVEAPSLGFGPCHIDIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVW 179 (431)
T ss_pred CCCcccCccccceeeeeeecccceecccccCCCCCceeecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEE
Confidence 66788899999999 665
Q ss_pred -------------------Ccceeeec---------------CCceeeeecCCCCCCCceEecccCCCeeccCCCCcchH
Q psy15976 80 -------------------HHHTRLIS---------------EPVVTTTYSSGSSFEHQVVTTDLHHDCTSNHTGTSASA 125 (319)
Q Consensus 80 -------------------~~~~isvg---------------~~~~~~~~s~g~~~g~~i~st~~~~~~~~~~sGTS~Aa 125 (319)
++|+++++ +..++++++++......|.++++...|.....|||.++
T Consensus 180 as~ngg~~~d~c~c~~y~~~i~t~~~~~~~~~~~~p~y~~~C~~~~~s~~s~~~~~~~~~~~~~~~~~c~e~h~g~s~~~ 259 (431)
T KOG3525|consen 180 ASGNGGTCGDSCHCDGYTNSIYTLSISCATQCGKKPQYRERCASCLASTYSSGGPTEECIVCTDPRHSCTEGHTGTSASA 259 (431)
T ss_pred EecCccccccccccccccCcceecccccccccCCCccccccccccccccccCCCCcceeeeecCCCccccccCCCCcCcc
Confidence 44444444 56667778887765667899999989999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCCCCCcccCCCCCcccCcceeeecCHHHHHHHHhccCccCcceeee
Q psy15976 126 PLAAGICALALEANPGLTWRDMQHIVVATARPANLRAPDWATNGVGRNVSHSFGYGLMDATAMVRLARQWKTVPEQFKCE 205 (319)
Q Consensus 126 P~vaG~~AL~l~~~p~lt~~~v~~~l~~ta~~~~~~~~~~~~~~~g~~~~~~~G~G~vda~~av~~a~~~~~~~~~~~~~ 205 (319)
|+.||.++|.++++|.++++++++++..++.........|..|.++..+++.||||++++...+.+++.|+++++|..|.
T Consensus 260 ~~~a~~~~~~~~~~~~ls~~d~~~l~~~~~~~~~~~~~~~~~n~~g~~~~h~~g~~~~~~~~~~~~~~~~~~~~~q~~~~ 339 (431)
T KOG3525|consen 260 PLAAGIIALALEANPCLSWRDSQHLIVLTSRPKVLLKGKWKSNGAGGLVSHLYGFGLLDAKALVSCAKTWTTVPCQHCCP 339 (431)
T ss_pred chhcchhhhhhccCccccccchhhhhhhhcchhhccCCCceEecCCceeeeeecccccCcchhhhhhccCccCCcccccC
Confidence 99999999999999999999999999999999888878999999999999999999999999999999999999998875
Q ss_pred cCCCCCCCCccccCCCCceEEEEeeccCCCccceeeEEEEEEEeecCCCceEEEEECCCCCeeEecccCCCCCCCCCccc
Q psy15976 206 ASPSEPSEMERPIPAKSSIRLKLDVTECPHVNYLEHVQARVTLSAHRRGDLQIVLVSPAGTRATLLATRPHDSSKAGFNA 285 (319)
Q Consensus 206 ~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~e~v~v~v~i~h~~~gdl~i~L~SP~GT~s~l~~~~~~d~~~~~~~~ 285 (319)
.... .+.. +++..|. +..+|||++++.|.|+.||+|+|.|.||+||.|.|+.+|..|.+.+ |.+
T Consensus 340 ~~~~-----~~~~---------~~~~~c~-~~~lehv~~~~~i~~~~rg~l~~~l~sp~g~~s~l~~~r~~d~~~~-f~d 403 (431)
T KOG3525|consen 340 KDSL-----LRDR---------SDTDECK-VKYLEHVQVRVTITHPRRGDLQLYLFSPSGTKSRLLAPRPRDHSYE-FTD 403 (431)
T ss_pred cchh-----hccc---------cccccee-eeeeeeEEEEEEeecccccceEEeeecCCceeecccccChhhhccc-ccC
Confidence 4321 1111 3445555 6799999999999999999999999999999999999999999888 999
Q ss_pred ceeeeccccCCCCCccEEEEEEECCc
Q psy15976 286 WPFMSVHSWGEQPFGSWYLEIHNEGR 311 (319)
Q Consensus 286 ~~f~s~~f~gE~~~G~W~l~i~d~~~ 311 (319)
|+||++++|||+++|+|+|.|.|.+.
T Consensus 404 w~f~~v~~w~e~~~g~~~l~~~~~~~ 429 (431)
T KOG3525|consen 404 WNFMTVHCWGENAEGTWKLEVQDVET 429 (431)
T ss_pred CcceeeeecccCcceeEEEEEecccC
Confidence 99999999999999999999998764
No 3
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.95 E-value=1.8e-27 Score=223.73 Aligned_cols=94 Identities=20% Similarity=0.206 Sum_probs=76.5
Q ss_pred CCCceEecccCC-CeeccCCCCcchHHHHHHHHHHHHhhC-CCCCHHHHHHHHHhhcCCCCCCCCCcccCCCCCcccCcc
Q psy15976 101 FEHQVVTTDLHH-DCTSNHTGTSASAPLAAGICALALEAN-PGLTWRDMQHIVVATARPANLRAPDWATNGVGRNVSHSF 178 (319)
Q Consensus 101 ~g~~i~st~~~~-~~~~~~sGTS~AaP~vaG~~AL~l~~~-p~lt~~~v~~~l~~ta~~~~~~~~~~~~~~~g~~~~~~~ 178 (319)
||..++++.+.+ +.|..++|||||||+|||++||+++++ |.+++++|+++|..+|.........+..+. +.++.++
T Consensus 209 pG~~i~~~~~~~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~~~--~~~~~~~ 286 (312)
T cd07489 209 PGGNILSTYPLAGGGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSALPD--LAPVAQQ 286 (312)
T ss_pred CCCCEEEeeeCCCCceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccccC--CCCHhhc
Confidence 566676666553 346778999999999999999999999 999999999999999998765544333322 4667899
Q ss_pred eeeecCHHHHHHHHhccC
Q psy15976 179 GYGLMDATAMVRLARQWK 196 (319)
Q Consensus 179 G~G~vda~~av~~a~~~~ 196 (319)
|||+||+.+||+.+.++.
T Consensus 287 G~G~vn~~~a~~~~~~~~ 304 (312)
T cd07489 287 GAGLVNAYKALYATTTLS 304 (312)
T ss_pred CcceeeHHHHhcCCcccc
Confidence 999999999999887765
No 4
>PTZ00262 subtilisin-like protease; Provisional
Probab=99.94 E-value=1.2e-26 Score=231.36 Aligned_cols=84 Identities=24% Similarity=0.297 Sum_probs=69.4
Q ss_pred CCCCceEecccCCCeeccCCCCcchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCCCCCcccCCCCCcccCcce
Q psy15976 100 SFEHQVVTTDLHHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLRAPDWATNGVGRNVSHSFG 179 (319)
Q Consensus 100 ~~g~~i~st~~~~~~~~~~sGTS~AaP~vaG~~AL~l~~~p~lt~~~v~~~l~~ta~~~~~~~~~~~~~~~g~~~~~~~G 179 (319)
.||..|+++.+.+ .|..++|||||||||||++|||++++|+|+++||+++|..||.+.... ...++
T Consensus 536 APG~dI~St~p~g-~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~-------------~n~~~ 601 (639)
T PTZ00262 536 APGTNIYSTFPKN-SYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSL-------------KNKVK 601 (639)
T ss_pred eCCCCeeeccCCC-ceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCC-------------CCccc
Confidence 3788899988765 467799999999999999999999999999999999999999865321 11333
Q ss_pred e-eecCHHHHHHHHhccCc
Q psy15976 180 Y-GLMDATAMVRLARQWKT 197 (319)
Q Consensus 180 ~-G~vda~~av~~a~~~~~ 197 (319)
+ |+||+.+||++|..-+.
T Consensus 602 wgG~LDa~kAV~~Ai~~~~ 620 (639)
T PTZ00262 602 WGGYLDIHHAVNLAIASKH 620 (639)
T ss_pred cCcEEcHHHHHHHHHhccc
Confidence 3 89999999999886543
No 5
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=99.94 E-value=4.5e-26 Score=212.40 Aligned_cols=156 Identities=53% Similarity=0.795 Sum_probs=113.0
Q ss_pred CCcHHHHhcCCCCCCcEEEEecCCCCCCCcccccCCCCCcceecCCCCCCCCCCC--CCCcccc----------------
Q psy15976 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPMPRY--DQIFPDL---------------- 62 (319)
Q Consensus 1 inv~~aW~~g~tG~GV~VAVIDtGid~~HpdL~~~~~~~~~~d~~~~~~~~~p~~--~~~~~~~---------------- 62 (319)
||+.++|+.|++|+||+||||||||+..||||++++.....|+|...+.++.|.. ...|+++
T Consensus 26 ~~~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gHGT~vAgiiag~~~~~~~~~ 105 (297)
T cd04059 26 LNVTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDPEASYDFNDNDPDPTPRYDDDNSHGTRCAGEIAAVGNNGICGV 105 (297)
T ss_pred cccHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccccccccccCCCCCCCCccccccccCcceeeEEEeecCCCcccc
Confidence 6899999999999999999999999999999999888778899988777776664 2233333
Q ss_pred --------------------------ccccCCcccEEeCC---CC-----C-----------------------------
Q psy15976 63 --------------------------YHLEHKHVAKRSAD---PS-----H----------------------------- 79 (319)
Q Consensus 63 --------------------------~~~~~~~i~i~s~s---P~-----d----------------------------- 79 (319)
+.+..+.++|+++| +. +
T Consensus 106 GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AA 185 (297)
T cd04059 106 GVAPGAKLGGIRMLDGDVTDVVEAESLGLNPDYIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAA 185 (297)
T ss_pred cccccceEeEEEecCCccccHHHHHHHhcccCCceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeC
Confidence 11223345666666 10 0
Q ss_pred -----------------CcceeeecC---CceeeeecCCCC------C-------CCceEecccC--CCeeccCCCCcch
Q psy15976 80 -----------------HHHTRLISE---PVVTTTYSSGSS------F-------EHQVVTTDLH--HDCTSNHTGTSAS 124 (319)
Q Consensus 80 -----------------~~~~isvg~---~~~~~~~s~g~~------~-------g~~i~st~~~--~~~~~~~sGTS~A 124 (319)
+.++++||+ ......||+.+. + +..|+++++. ..++..++|||||
T Consensus 186 GN~g~~~~~~~~~~~~~~~~vi~Vga~~~~g~~~~~s~~g~~~~~~a~g~~~~~~~~~i~~~~~~~~~~~~~~~sGTS~A 265 (297)
T cd04059 186 GNGGNLGDNCNCDGYNNSIYTISVSAVTANGVRASYSEVGSSVLASAPSGGSGNPEASIVTTDLGGNCNCTSSHNGTSAA 265 (297)
T ss_pred CCCCCCCCCCCCCcccCCCceEEEEeeCCCCCCcCCCCCCCcEEEEecCCCCCCCCCceEeCCCCCCCCcccccCCcchh
Confidence 222333331 001112222211 2 2348888887 4788899999999
Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHhhcC
Q psy15976 125 APLAAGICALALEANPGLTWRDMQHIVVATAR 156 (319)
Q Consensus 125 aP~vaG~~AL~l~~~p~lt~~~v~~~l~~ta~ 156 (319)
||+|||++|||+|++|+|+++|||++|+.||+
T Consensus 266 aP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 266 APLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred hhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999985
No 6
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=99.91 E-value=3.7e-24 Score=198.02 Aligned_cols=68 Identities=43% Similarity=0.515 Sum_probs=59.9
Q ss_pred CCeeccCCCCcchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCCCCCcccCCCCCcccCcceeeecCHHHHHH
Q psy15976 112 HDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLRAPDWATNGVGRNVSHSFGYGLMDATAMVR 190 (319)
Q Consensus 112 ~~~~~~~sGTS~AaP~vaG~~AL~l~~~p~lt~~~v~~~l~~ta~~~~~~~~~~~~~~~g~~~~~~~G~G~vda~~av~ 190 (319)
++.|..++|||||||||||++|||+|++|+++++||+++|+.+|++.... . ++..||||+||+.+||+
T Consensus 207 ~~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~--g---------~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 207 GDGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEP--G---------YDNASGSGLVDADRAVA 274 (275)
T ss_pred CCceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCC--C---------CCCCcCcCcccHHHHhh
Confidence 45677899999999999999999999999999999999999999876422 1 25689999999999996
No 7
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=99.90 E-value=1.9e-23 Score=198.89 Aligned_cols=83 Identities=22% Similarity=0.283 Sum_probs=60.6
Q ss_pred CCCceEecccCCCeeccCCCCcchHHHHHHHHHHHHhh----CCCCCHHH----HHHHHHhhcCCCCCCCCCcccCCCC-
Q psy15976 101 FEHQVVTTDLHHDCTSNHTGTSASAPLAAGICALALEA----NPGLTWRD----MQHIVVATARPANLRAPDWATNGVG- 171 (319)
Q Consensus 101 ~g~~i~st~~~~~~~~~~sGTS~AaP~vaG~~AL~l~~----~p~lt~~~----v~~~l~~ta~~~~~~~~~~~~~~~g- 171 (319)
||..|+++... ++|..++|||||||+|||++|||+|+ +|.|++++ ||++|+.||.+.... +..+
T Consensus 255 pG~~i~s~~~~-~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~------~~~~~ 327 (346)
T cd07475 255 PGGNIYSTVND-NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDS------EDTKT 327 (346)
T ss_pred CCCCeEEecCC-CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCccccc------CCCCc
Confidence 44455555544 45677899999999999999999998 79999887 677778888842111 1111
Q ss_pred CcccCcceeeecCHHHHHH
Q psy15976 172 RNVSHSFGYGLMDATAMVR 190 (319)
Q Consensus 172 ~~~~~~~G~G~vda~~av~ 190 (319)
......+|+|+||+.+||+
T Consensus 328 ~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 328 YYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred cCCccccCcchhcHHHhhC
Confidence 2224577999999999984
No 8
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.89 E-value=5.8e-23 Score=191.17 Aligned_cols=81 Identities=23% Similarity=0.209 Sum_probs=66.1
Q ss_pred CCCceEecccC-CCeeccCCCCcchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCCCCCcccCCCCCcccCcce
Q psy15976 101 FEHQVVTTDLH-HDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLRAPDWATNGVGRNVSHSFG 179 (319)
Q Consensus 101 ~g~~i~st~~~-~~~~~~~sGTS~AaP~vaG~~AL~l~~~p~lt~~~v~~~l~~ta~~~~~~~~~~~~~~~g~~~~~~~G 179 (319)
+|..+.++... +++|..++|||||||+|||++|||+|++|+|++++||++|+.||++.......+ .++..+|
T Consensus 214 pG~~i~~~~~~~~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~~~-------~~~~~~G 286 (295)
T cd07474 214 PGVDIMSTAPGSGTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDGVV-------YPVSRQG 286 (295)
T ss_pred CcCceEeeccCCCCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCCCc-------CChhccC
Confidence 45556665554 256778999999999999999999999999999999999999999876544322 2467999
Q ss_pred eeecCHHHH
Q psy15976 180 YGLMDATAM 188 (319)
Q Consensus 180 ~G~vda~~a 188 (319)
+|+||+.+|
T Consensus 287 ~G~l~~~~A 295 (295)
T cd07474 287 AGRVDALRA 295 (295)
T ss_pred cceeccccC
Confidence 999999875
No 9
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=99.89 E-value=7.1e-23 Score=187.54 Aligned_cols=57 Identities=25% Similarity=0.360 Sum_probs=48.9
Q ss_pred CCCceEecccCCCeeccCCCCcchHHHHHHHHHHHHhhCC----CCCHHHHHHHHHhhcCCC
Q psy15976 101 FEHQVVTTDLHHDCTSNHTGTSASAPLAAGICALALEANP----GLTWRDMQHIVVATARPA 158 (319)
Q Consensus 101 ~g~~i~st~~~~~~~~~~sGTS~AaP~vaG~~AL~l~~~p----~lt~~~v~~~l~~ta~~~ 158 (319)
||..|+++...++ |..++|||||||||||++|||+|++| .+++.+||++|.++|++.
T Consensus 193 pG~~i~~~~~~~~-~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~ 253 (255)
T cd07479 193 YGSGVYGSKLKGG-CRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRL 253 (255)
T ss_pred cCCCeeccccCCC-eEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccC
Confidence 4566666666555 45689999999999999999999999 799999999999999875
No 10
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=99.87 E-value=5e-22 Score=185.26 Aligned_cols=55 Identities=24% Similarity=0.402 Sum_probs=49.3
Q ss_pred CCCceEecccCCCeeccCCCCcchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhcC
Q psy15976 101 FEHQVVTTDLHHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATAR 156 (319)
Q Consensus 101 ~g~~i~st~~~~~~~~~~sGTS~AaP~vaG~~AL~l~~~p~lt~~~v~~~l~~ta~ 156 (319)
||..|+++...+ .|..++|||||||+|||++|||+|++|+|+++|||++|++||+
T Consensus 237 PG~~i~s~~~~~-~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 237 PGERIYSTTPDN-EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred CCCCeEeccCcC-CeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 677888877655 4667899999999999999999999999999999999999984
No 11
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.86 E-value=1e-21 Score=184.42 Aligned_cols=56 Identities=21% Similarity=0.231 Sum_probs=47.4
Q ss_pred CCCceEeccc---------CCCeeccCCCCcchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhcC
Q psy15976 101 FEHQVVTTDL---------HHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATAR 156 (319)
Q Consensus 101 ~g~~i~st~~---------~~~~~~~~sGTS~AaP~vaG~~AL~l~~~p~lt~~~v~~~l~~ta~ 156 (319)
||..|++... ....|..++|||||||+|||++|||+|++|+++++|||++|+.||+
T Consensus 243 pG~~i~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 243 PGVDILAAWTPEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred ccCceeecccCccccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 5556655543 1355677899999999999999999999999999999999999985
No 12
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.86 E-value=2.3e-21 Score=179.57 Aligned_cols=65 Identities=28% Similarity=0.372 Sum_probs=53.5
Q ss_pred eeeecCCC------CCCCceEecccCC---------CeeccCCCCcchHHHHHHHHHHHHh----h-CCCCCHHHHHHHH
Q psy15976 92 TTTYSSGS------SFEHQVVTTDLHH---------DCTSNHTGTSASAPLAAGICALALE----A-NPGLTWRDMQHIV 151 (319)
Q Consensus 92 ~~~~s~g~------~~g~~i~st~~~~---------~~~~~~sGTS~AaP~vaG~~AL~l~----~-~p~lt~~~v~~~l 151 (319)
.+.||+.+ .||..|+++...+ +|+..++|||||||+|||++|||++ + ||.|+++||+++|
T Consensus 193 ~~~fSn~G~~vdi~APG~~i~s~~~~~~~~~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L 272 (277)
T cd04843 193 RLAFSNYGSRVDVYGWGENVTTTGYGDLQDLGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELL 272 (277)
T ss_pred cccccCCCCccceEcCCCCeEecCCCCcccccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Confidence 35666654 3888999988754 3567899999999999999999975 3 5999999999999
Q ss_pred HhhcC
Q psy15976 152 VATAR 156 (319)
Q Consensus 152 ~~ta~ 156 (319)
..|++
T Consensus 273 ~~t~~ 277 (277)
T cd04843 273 TATGT 277 (277)
T ss_pred HhcCC
Confidence 99874
No 13
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.86 E-value=5.1e-21 Score=179.04 Aligned_cols=49 Identities=43% Similarity=0.608 Sum_probs=44.7
Q ss_pred CCeeccCCCCcchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCC
Q psy15976 112 HDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANL 160 (319)
Q Consensus 112 ~~~~~~~sGTS~AaP~vaG~~AL~l~~~p~lt~~~v~~~l~~ta~~~~~ 160 (319)
++.|..++|||||||||||++|||+|++|.++++||+++|..+|++...
T Consensus 239 ~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~~ 287 (298)
T cd07494 239 NDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVTK 287 (298)
T ss_pred CCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC
Confidence 4557779999999999999999999999999999999999999997644
No 14
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=99.86 E-value=2.1e-21 Score=179.02 Aligned_cols=60 Identities=23% Similarity=0.251 Sum_probs=51.4
Q ss_pred CCCceEecccCCCeeccCCCCcchHHHHHHHHHHHHhhCCC----CCHHHHHHHHHhhcCCCCCC
Q psy15976 101 FEHQVVTTDLHHDCTSNHTGTSASAPLAAGICALALEANPG----LTWRDMQHIVVATARPANLR 161 (319)
Q Consensus 101 ~g~~i~st~~~~~~~~~~sGTS~AaP~vaG~~AL~l~~~p~----lt~~~v~~~l~~ta~~~~~~ 161 (319)
||..|+++.+.+ .|..++|||||||+|||++|||+|.+|. +++++||++|+.||++....
T Consensus 192 pG~~i~~~~~~~-~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 192 PGENILGAALGG-EVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred cCCCceeecCCC-CeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCc
Confidence 567777776654 4667899999999999999999999887 89999999999999987543
No 15
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=99.86 E-value=3.4e-21 Score=176.35 Aligned_cols=152 Identities=21% Similarity=0.312 Sum_probs=102.9
Q ss_pred CCcHHHHhcCCCCCCcEEEEecCCCCCCCcccccCCCCCcceecCCCCCCCCCCCCCCcccc------------------
Q psy15976 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPMPRYDQIFPDL------------------ 62 (319)
Q Consensus 1 inv~~aW~~g~tG~GV~VAVIDtGid~~HpdL~~~~~~~~~~d~~~~~~~~~p~~~~~~~~~------------------ 62 (319)
|+++.+|+.+ +|+||+|||||+||+.+||+|.. .....++++...+.++. ....|+++
T Consensus 16 ~~~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~-~~~~~~~~~~~~~~~~~--d~~~HGT~vagii~~~~~~~~~~~Gi 91 (260)
T cd07484 16 IGAPKAWDIT-GGSGVTVAVVDTGVDPTHPDLLK-VKFVLGYDFVDNDSDAM--DDNGHGTHVAGIIAAATNNGTGVAGV 91 (260)
T ss_pred cChHHHHhhc-CCCCCEEEEEeCCCCCCCccccc-CCcccceeccCCCCCCC--CCCCcHHHHHHHHhCccCCCCceEeE
Confidence 6889999998 99999999999999999999853 34455677766554422 22233322
Q ss_pred --------------------------ccc-cCCcccEEeCC---CC----------------------------------
Q psy15976 63 --------------------------YHL-EHKHVAKRSAD---PS---------------------------------- 78 (319)
Q Consensus 63 --------------------------~~~-~~~~i~i~s~s---P~---------------------------------- 78 (319)
+.+ ..+.++|+++| +.
T Consensus 92 ap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~p 171 (260)
T cd07484 92 APKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGGLGSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYP 171 (260)
T ss_pred CCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCCCCCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCC
Confidence 000 11234555555 21
Q ss_pred -CCcceeeecC---CceeeeecCCC------CCCCceEecccCCCeeccCCCCcchHHHHHHHHHHHHhhCCCCCHHHHH
Q psy15976 79 -HHHHTRLISE---PVVTTTYSSGS------SFEHQVVTTDLHHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQ 148 (319)
Q Consensus 79 -d~~~~isvg~---~~~~~~~s~g~------~~g~~i~st~~~~~~~~~~sGTS~AaP~vaG~~AL~l~~~p~lt~~~v~ 148 (319)
....+++||+ ....+.||+.+ .+|..++++... ++|..++|||||||+|||++||+++++| ++++||+
T Consensus 172 a~~~~vi~Vga~~~~~~~~~~s~~g~~~~~~apG~~i~~~~~~-~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~ 249 (260)
T cd07484 172 AAYPGAIAVAATDQDDKRASFSNYGKWVDVSAPGGGILSTTPD-GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVR 249 (260)
T ss_pred CCCCCeEEEEeeCCCCCcCCcCCCCCCceEEeCCCCcEeecCC-CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHH
Confidence 1344455541 11122333322 156666666554 4567799999999999999999999999 9999999
Q ss_pred HHHHhhcCCC
Q psy15976 149 HIVVATARPA 158 (319)
Q Consensus 149 ~~l~~ta~~~ 158 (319)
++|+.+|++.
T Consensus 250 ~~L~~tA~~~ 259 (260)
T cd07484 250 DALKKTADDI 259 (260)
T ss_pred HHHHHhCccC
Confidence 9999999864
No 16
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=99.85 E-value=3e-21 Score=176.34 Aligned_cols=147 Identities=18% Similarity=0.178 Sum_probs=99.1
Q ss_pred HHhcCCCCCCcEEEEecCCCCCCCcccccCCCCCcceecCCCCCCCCCCCCCCcccc-----------------------
Q psy15976 6 AWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPMPRYDQIFPDL----------------------- 62 (319)
Q Consensus 6 aW~~g~tG~GV~VAVIDtGid~~HpdL~~~~~~~~~~d~~~~~~~~~p~~~~~~~~~----------------------- 62 (319)
.|..+++|+||+|||||+||+.+||||+++... .+++...+. +.....|+++
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~~~~--~~~~~~~~~---~~d~~~HGT~vAgiia~~~~GvAp~a~i~~~~i 91 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGRAIW--GADFVGGDP---DSDCNGHGTHVAGTVGGKTYGVAKKANLVAVKV 91 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCCeee--eeecCCCCC---CCCCCccHHHHHHHHHccccCcCCCCeEEEEEE
Confidence 677789999999999999999999999987533 455554432 1111222222
Q ss_pred ---------------ccc--c----CCcccEEeCC---CCC-----------------------------------Ccce
Q psy15976 63 ---------------YHL--E----HKHVAKRSAD---PSH-----------------------------------HHHT 83 (319)
Q Consensus 63 ---------------~~~--~----~~~i~i~s~s---P~d-----------------------------------~~~~ 83 (319)
+.+ . ...++|+++| +.. ...+
T Consensus 92 ~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~v 171 (255)
T cd04077 92 LDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGASTALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEA 171 (255)
T ss_pred eCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCCCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCce
Confidence 000 0 1235677766 211 2334
Q ss_pred eeecC---CceeeeecCCCC------CCCceEecccC-CCeeccCCCCcchHHHHHHHHHHHHhhCCCCCHHHHHHHHHh
Q psy15976 84 RLISE---PVVTTTYSSGSS------FEHQVVTTDLH-HDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVA 153 (319)
Q Consensus 84 isvg~---~~~~~~~s~g~~------~g~~i~st~~~-~~~~~~~sGTS~AaP~vaG~~AL~l~~~p~lt~~~v~~~l~~ 153 (319)
|+||+ ......||+.+. ||..|.++... +..+..++|||||||+|||++|||++++|+++++||+++|+.
T Consensus 172 i~Vga~~~~~~~~~~S~~g~~~~i~apG~~i~~~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~ 251 (255)
T cd04077 172 ITVGATDSDDARASFSNYGSCVDIFAPGVDILSAWIGSDTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLN 251 (255)
T ss_pred EEEeccCCCCCccCcccCCCCCcEEeCCCCeEecccCCCCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHh
Confidence 45541 111223444322 56667776653 456778999999999999999999999999999999999999
Q ss_pred hcCC
Q psy15976 154 TARP 157 (319)
Q Consensus 154 ta~~ 157 (319)
||++
T Consensus 252 tA~~ 255 (255)
T cd04077 252 LATK 255 (255)
T ss_pred hccC
Confidence 9974
No 17
>PF01483 P_proprotein: Proprotein convertase P-domain; InterPro: IPR002884 This domain, termed the P domain is approximately 150 amino acids in length and C-terminal to a serine endopeptidase domain which belong to MEROPS peptidase family S8 (clan SB), subfamily S8B (kexin). The domain is primarily associated with the calcium-dependent serine endopeptidases, kex2/subtilisin proprotein convertases (PCs), which have been identified in all eukaryotes [] and in the gammaproteobacteria, Nostoc (cyanobacteria) and in Streptomyces avermitilis. The P domain appears necessary for folding and maintaining the endopeptidase catalytic domain and to regulate its calcium and acidic pH dependence. In addition, contained within the middle of the P domain in most PC family members is the cognate integrin binding RGD sequence [], which may be required for intracellular compartmentalization and maintenance of enzyme stability within the ER. The integrity of the RGD sequence of proprotein convertase PC1 is critical for its zymogen and C-terminal processing and for its cellular trafficking [, ]. The carboxy-terminal tail provides uniqueness to each PC family member being the least conserved region of all convertases [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1P8J_E 1OT5_B 2ID4_A 1R64_A 3HJR_A.
Probab=99.85 E-value=9.7e-22 Score=150.99 Aligned_cols=79 Identities=44% Similarity=0.781 Sum_probs=63.6
Q ss_pred eeeEEEEEEEeecCCCceEEEEECCCCCeeEecccCCCCCCCCCcccceeeeccccCCCCCccEEEEEEE-CCc-ccccc
Q psy15976 239 LEHVQARVTLSAHRRGDLQIVLVSPAGTRATLLATRPHDSSKAGFNAWPFMSVHSWGEQPFGSWYLEIHN-EGR-YFGEL 316 (319)
Q Consensus 239 ~e~v~v~v~i~h~~~gdl~i~L~SP~GT~s~l~~~~~~d~~~~~~~~~~f~s~~f~gE~~~G~W~l~i~d-~~~-~~~~~ 316 (319)
||+|+|+|+|+|+++|||+|+|+||+||++.|+..+..|....++..|+|++++||||+++|+|+|+|.| ... ..|+|
T Consensus 1 vE~v~v~v~i~H~~~gdL~i~L~SP~Gt~~~L~~~~~~d~~~~~~~~~~f~~~~f~Ge~~~G~W~L~v~D~~~~~~~G~l 80 (87)
T PF01483_consen 1 VEHVQVSVDITHPYRGDLRITLISPSGTRSTLKDRRGSDDSGSGFLNWTFTSVAFWGESANGTWTLRVTDRNSPGDTGTL 80 (87)
T ss_dssp EEEEEEEEEEEESSGGGEEEEEE-TT--EEEEE-SSTTHHHSTSEEEEEEEESTTTT-B--EEEEEEEEEBSSTTS-EEE
T ss_pred CcEEEEEEEEEcCCcCCEEEEEECCCCCEEEEECCcCCCcccccccccEEEEEeecCccCCCEEEEEEEECCCCCCcEEE
Confidence 7999999999999999999999999999999999888765557888999999999999999999999999 443 46776
Q ss_pred c
Q psy15976 317 T 317 (319)
Q Consensus 317 ~ 317 (319)
+
T Consensus 81 ~ 81 (87)
T PF01483_consen 81 N 81 (87)
T ss_dssp E
T ss_pred E
Confidence 5
No 18
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=99.85 E-value=4.7e-21 Score=176.94 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=46.0
Q ss_pred CCC-ceEecccC-----CCeeccCCCCcchHHHHHHHHHHHHhhCCC-CCHHHHHHHHHhh
Q psy15976 101 FEH-QVVTTDLH-----HDCTSNHTGTSASAPLAAGICALALEANPG-LTWRDMQHIVVAT 154 (319)
Q Consensus 101 ~g~-~i~st~~~-----~~~~~~~sGTS~AaP~vaG~~AL~l~~~p~-lt~~~v~~~l~~t 154 (319)
||. .++++.+. .++|..++|||||||+|||++|||+|++|+ ++++||+++|+.|
T Consensus 213 pG~~~i~~~~~~~~~~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 213 PGVGTILSTVPKLDGDGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred CCCCccccccccccCCCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 555 56666553 356788999999999999999999999999 9999999999875
No 19
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.84 E-value=8.4e-21 Score=172.22 Aligned_cols=68 Identities=29% Similarity=0.310 Sum_probs=56.9
Q ss_pred CCCceEecccCCCeeccCCCCcchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCCCCCcccCCCCCcccCccee
Q psy15976 101 FEHQVVTTDLHHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLRAPDWATNGVGRNVSHSFGY 180 (319)
Q Consensus 101 ~g~~i~st~~~~~~~~~~sGTS~AaP~vaG~~AL~l~~~p~lt~~~v~~~l~~ta~~~~~~~~~~~~~~~g~~~~~~~G~ 180 (319)
||..|+++...++ |..++|||||||||||++||++|++| ++++||+++|.+||++..... ++..|||
T Consensus 172 pG~~i~~~~~~~~-~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~~-----------~d~~~G~ 238 (239)
T cd05561 172 PGVDVWVAAPGGG-YRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPPG-----------RDPVFGY 238 (239)
T ss_pred cccceecccCCCC-EEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCCC-----------cCCCcCC
Confidence 6777887665554 56789999999999999999999999 999999999999998654332 2568898
Q ss_pred e
Q psy15976 181 G 181 (319)
Q Consensus 181 G 181 (319)
|
T Consensus 239 G 239 (239)
T cd05561 239 G 239 (239)
T ss_pred C
Confidence 7
No 20
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=99.84 E-value=1.6e-20 Score=172.52 Aligned_cols=55 Identities=29% Similarity=0.299 Sum_probs=48.1
Q ss_pred CCCceEecccCCCeeccCCCCcchHHHHHHHHHHHHhhCCC--CCHHHHHHHHHhhcC
Q psy15976 101 FEHQVVTTDLHHDCTSNHTGTSASAPLAAGICALALEANPG--LTWRDMQHIVVATAR 156 (319)
Q Consensus 101 ~g~~i~st~~~~~~~~~~sGTS~AaP~vaG~~AL~l~~~p~--lt~~~v~~~l~~ta~ 156 (319)
||..|.++... ++|..++|||||||+|||++|||+|++|+ ++++||+++|+.||+
T Consensus 208 pG~~i~s~~~~-~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 208 PGVNIRSAVPG-GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred CCCCeEEecCC-CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 55566666654 56777999999999999999999999999 999999999999985
No 21
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.83 E-value=2.3e-20 Score=175.43 Aligned_cols=42 Identities=29% Similarity=0.296 Sum_probs=38.5
Q ss_pred eeccCCCCcchHHHHHHHHHHHHhhCC------CCCHHHHHHHHHhhc
Q psy15976 114 CTSNHTGTSASAPLAAGICALALEANP------GLTWRDMQHIVVATA 155 (319)
Q Consensus 114 ~~~~~sGTS~AaP~vaG~~AL~l~~~p------~lt~~~v~~~l~~ta 155 (319)
.|..++|||||||||||++|||+|++| .+++.+||.+|+.||
T Consensus 264 ~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 264 AFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred ceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 567799999999999999999999876 589999999999986
No 22
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.82 E-value=4.7e-20 Score=169.14 Aligned_cols=54 Identities=24% Similarity=0.305 Sum_probs=45.3
Q ss_pred CCceEecccCCCeeccCCCCcchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhcC
Q psy15976 102 EHQVVTTDLHHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATAR 156 (319)
Q Consensus 102 g~~i~st~~~~~~~~~~sGTS~AaP~vaG~~AL~l~~~p~lt~~~v~~~l~~ta~ 156 (319)
|..+++... .+.|..++|||||||+|||++|||++++|+|+++||+++|..||+
T Consensus 208 G~~~~~~~~-~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 208 GTGIYVING-DGNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred CCCeEEEcC-CCcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 344444333 445677899999999999999999999999999999999999984
No 23
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.82 E-value=6.3e-20 Score=164.23 Aligned_cols=55 Identities=22% Similarity=0.319 Sum_probs=48.4
Q ss_pred CCCceEecccCCCeeccCCCCcchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhcC
Q psy15976 101 FEHQVVTTDLHHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATAR 156 (319)
Q Consensus 101 ~g~~i~st~~~~~~~~~~sGTS~AaP~vaG~~AL~l~~~p~lt~~~v~~~l~~ta~ 156 (319)
||..|.++... ++|..++|||||||+|||++|||+|++|+|+++||+++|.+||+
T Consensus 168 pg~~i~~~~~~-~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 168 DGVDIIAPAPH-GRYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred CCCCeEeecCC-CCEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 56677766554 45677999999999999999999999999999999999999985
No 24
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.82 E-value=6.2e-20 Score=171.55 Aligned_cols=53 Identities=26% Similarity=0.272 Sum_probs=45.0
Q ss_pred CCCceEecccCCCeeccCCCCcchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q psy15976 101 FEHQVVTTDLHHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVAT 154 (319)
Q Consensus 101 ~g~~i~st~~~~~~~~~~sGTS~AaP~vaG~~AL~l~~~p~lt~~~v~~~l~~t 154 (319)
||..|+++... ++|..++|||||||+|||++||++|++|++++++++++|++.
T Consensus 218 pG~~i~s~~~~-~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~ 270 (297)
T cd07480 218 PGVDIVSAAPG-GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQAR 270 (297)
T ss_pred CCCCeEeecCC-CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHH
Confidence 56677766554 456779999999999999999999999999999999888843
No 25
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=99.79 E-value=4.3e-19 Score=161.78 Aligned_cols=56 Identities=27% Similarity=0.299 Sum_probs=49.2
Q ss_pred CCCceEecccC-CCeeccCCCCcchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhcC
Q psy15976 101 FEHQVVTTDLH-HDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATAR 156 (319)
Q Consensus 101 ~g~~i~st~~~-~~~~~~~sGTS~AaP~vaG~~AL~l~~~p~lt~~~v~~~l~~ta~ 156 (319)
||..|+++... ...+..++|||||||+|||++||++|++|.|+++||+.+|+.||+
T Consensus 211 pG~~i~~~~~~~~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 211 PGENIYSTDPDGGNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred CcCceeecccCCCCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 56667777663 456778999999999999999999999999999999999999985
No 26
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.79 E-value=4.8e-19 Score=161.38 Aligned_cols=56 Identities=27% Similarity=0.297 Sum_probs=46.3
Q ss_pred CCCceEec---ccCCCeeccCCCCcchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhcC
Q psy15976 101 FEHQVVTT---DLHHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATAR 156 (319)
Q Consensus 101 ~g~~i~st---~~~~~~~~~~sGTS~AaP~vaG~~AL~l~~~p~lt~~~v~~~l~~ta~ 156 (319)
+|..+.++ ....+.|..++|||||||+|||++|||++++|+++++|||++|+.||+
T Consensus 196 pG~~i~~~~~~~~~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 196 PGVDVYSARQGANGDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred ccCCeEccccCCCCCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 44455552 223455678999999999999999999999999999999999999984
No 27
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.79 E-value=8.7e-19 Score=160.23 Aligned_cols=56 Identities=30% Similarity=0.292 Sum_probs=48.3
Q ss_pred CCCceEec--------ccCCCeeccCCCCcchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhcC
Q psy15976 101 FEHQVVTT--------DLHHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATAR 156 (319)
Q Consensus 101 ~g~~i~st--------~~~~~~~~~~sGTS~AaP~vaG~~AL~l~~~p~lt~~~v~~~l~~ta~ 156 (319)
||..+++. ....+.+..++|||||||+|||++|||++++|.++++||+.+|+.||+
T Consensus 201 pG~~i~~~~~~~~~~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 201 PGENIVSCRSPGGNPGAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred cccceEeccccccccCCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 56667665 334566778999999999999999999999999999999999999985
No 28
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.78 E-value=1.5e-18 Score=158.62 Aligned_cols=55 Identities=27% Similarity=0.356 Sum_probs=47.1
Q ss_pred CCCceEecccCCCeeccCCCCcchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhcC
Q psy15976 101 FEHQVVTTDLHHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATAR 156 (319)
Q Consensus 101 ~g~~i~st~~~~~~~~~~sGTS~AaP~vaG~~AL~l~~~p~lt~~~v~~~l~~ta~ 156 (319)
||..+++... .++|..++|||||||+|||++||++|++|.++++|||++|+.||+
T Consensus 205 pG~~~~~~~~-~~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 205 PGVDILSTSP-GGGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred ccCCeEeccC-CCcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 4555666443 456778999999999999999999999999999999999999984
No 29
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.77 E-value=1.8e-18 Score=160.73 Aligned_cols=42 Identities=33% Similarity=0.431 Sum_probs=38.9
Q ss_pred CeeccCCCCcchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q psy15976 113 DCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVAT 154 (319)
Q Consensus 113 ~~~~~~sGTS~AaP~vaG~~AL~l~~~p~lt~~~v~~~l~~t 154 (319)
..|..++|||||||+|||++||++|++|+|+++||+++|+.|
T Consensus 244 ~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 244 STYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 456788999999999999999999999999999999999865
No 30
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=99.76 E-value=7.6e-19 Score=161.88 Aligned_cols=69 Identities=30% Similarity=0.524 Sum_probs=59.1
Q ss_pred eeccCCCCcchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCCCCCcccCCCCCcccCcceeeecCHHHHHH
Q psy15976 114 CTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLRAPDWATNGVGRNVSHSFGYGLMDATAMVR 190 (319)
Q Consensus 114 ~~~~~sGTS~AaP~vaG~~AL~l~~~p~lt~~~v~~~l~~ta~~~~~~~~~~~~~~~g~~~~~~~G~G~vda~~av~ 190 (319)
++..++|||||||+|||++||+++++|++++++|+++|..+|.+.... . +..++..||||++|+.+||+
T Consensus 214 ~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~-------~-~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 214 SYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGST-------N-GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp EEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSET-------T-SSSSHHHHTTSBE-HHHHHH
T ss_pred cccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcC-------C-CCCCCCCccCChhCHHHHhC
Confidence 466789999999999999999999999999999999999999987511 1 34557789999999999985
No 31
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=99.76 E-value=2.4e-18 Score=159.82 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=45.0
Q ss_pred CCCceEecc--------cCCCeeccCCCCcchHHHHHHHHHHHHhhCCCCCH--------HHHHHHHHhhcC
Q psy15976 101 FEHQVVTTD--------LHHDCTSNHTGTSASAPLAAGICALALEANPGLTW--------RDMQHIVVATAR 156 (319)
Q Consensus 101 ~g~~i~st~--------~~~~~~~~~sGTS~AaP~vaG~~AL~l~~~p~lt~--------~~v~~~l~~ta~ 156 (319)
||..++++. ....+|..++|||||||+|||++|||+|++|++++ .++|.+|+.||+
T Consensus 222 pG~~i~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 222 PGTGILSARSGGGGIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCCCeEeccCCCCCCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 556666664 23456778999999999999999999999765555 499999999885
No 32
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.75 E-value=4.8e-18 Score=153.77 Aligned_cols=43 Identities=40% Similarity=0.573 Sum_probs=39.8
Q ss_pred CCeeccCCCCcchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q psy15976 112 HDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVAT 154 (319)
Q Consensus 112 ~~~~~~~sGTS~AaP~vaG~~AL~l~~~p~lt~~~v~~~l~~t 154 (319)
++++..++|||||||+|||++|||+|++|+|+++|||++|+.|
T Consensus 200 ~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 200 GGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred CCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 4567789999999999999999999999999999999999865
No 33
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=99.75 E-value=5e-18 Score=167.35 Aligned_cols=70 Identities=26% Similarity=0.353 Sum_probs=56.3
Q ss_pred CCCceEecccCCCeeccCCCCcchHHHHHHHHHHHHhhC------CCCCHHHHHHHHHhhcCCCCCCCCCcccCCCCCcc
Q psy15976 101 FEHQVVTTDLHHDCTSNHTGTSASAPLAAGICALALEAN------PGLTWRDMQHIVVATARPANLRAPDWATNGVGRNV 174 (319)
Q Consensus 101 ~g~~i~st~~~~~~~~~~sGTS~AaP~vaG~~AL~l~~~------p~lt~~~v~~~l~~ta~~~~~~~~~~~~~~~g~~~ 174 (319)
||..|+++.+.+ .|..++|||||||||||++|||+|.. |.+++++||.+|+.+|++.... .++
T Consensus 380 PG~~i~s~~~~~-~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~tA~~~~~~----------~~p 448 (455)
T cd07478 380 PGVNILTASPGG-GYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGARRRPGD----------EYP 448 (455)
T ss_pred cCCCEEEeecCC-cEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHHHhCccCCCC----------CCC
Confidence 677788777655 46779999999999999999999965 5579999999999999976421 123
Q ss_pred cCcceee
Q psy15976 175 SHSFGYG 181 (319)
Q Consensus 175 ~~~~G~G 181 (319)
+..+|||
T Consensus 449 n~~~GyG 455 (455)
T cd07478 449 NPEWGYG 455 (455)
T ss_pred CCCCCCC
Confidence 5688987
No 34
>COG4935 Regulatory P domain of the subtilisin-like proprotein convertases and other proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=8.5e-18 Score=141.56 Aligned_cols=104 Identities=29% Similarity=0.565 Sum_probs=80.3
Q ss_pred CCccccCCCCceEEEEeeccCCCccceeeEEEEEEEeecCCCceEEEEECCCCC--eeEecccCCCCCCCCCcccceeee
Q psy15976 213 EMERPIPAKSSIRLKLDVTECPHVNYLEHVQARVTLSAHRRGDLQIVLVSPAGT--RATLLATRPHDSSKAGFNAWPFMS 290 (319)
Q Consensus 213 ~~~~~ip~~~~~~~~~~~~~~~~~~~~e~v~v~v~i~h~~~gdl~i~L~SP~GT--~s~l~~~~~~d~~~~~~~~~~f~s 290 (319)
..+..+|+....++..++.... -+++.+|+|+|+|+|++||||+|.|+||+|. .+.+...|+.|+...+|..|.||+
T Consensus 12 ~~~~~~pd~~~~~~~~~~~v~~-~~~ik~v~V~VdI~H~yrGDL~I~L~sP~g~~Il~~~~~~~~~D~~~q~~~~~s~~l 90 (177)
T COG4935 12 NLNLTLPDNDLQTISSSFSVAD-ANFIKDVTVRVDITHEYRGDLRITLISPSGQGILSNLTLGRRYDDDSQGYNDQSFML 90 (177)
T ss_pred ccccccCCCcccccEEEEEecC-CCceeeEEEEEeccccccccEEEEEeCCCCcceEEeeccCCccccccceeeeeeeee
Confidence 3456778776555444433322 3678899999999999999999999999963 333333566777778999999999
Q ss_pred ccccCCCCCccEEEEEEECCc-cccccc
Q psy15976 291 VHSWGEQPFGSWYLEIHNEGR-YFGELT 317 (319)
Q Consensus 291 ~~f~gE~~~G~W~l~i~d~~~-~~~~~~ 317 (319)
+++|||.+.|+|+|+|.|... .-|.|+
T Consensus 91 ~~~~ge~~~G~W~L~V~D~~~g~~Gtf~ 118 (177)
T COG4935 91 VQLWGERAEGNWRLEVQDLAGGHTGTFH 118 (177)
T ss_pred eeeccCCCCceEEEEEEecCCCceeEEE
Confidence 999999999999999999754 466665
No 35
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=99.73 E-value=1.6e-17 Score=148.81 Aligned_cols=53 Identities=25% Similarity=0.294 Sum_probs=45.5
Q ss_pred CCCceEecccCCCeeccCCCCcchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q psy15976 101 FEHQVVTTDLHHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVAT 154 (319)
Q Consensus 101 ~g~~i~st~~~~~~~~~~sGTS~AaP~vaG~~AL~l~~~p~lt~~~v~~~l~~t 154 (319)
||..++++...+ .+..++|||||||+|||++|||+|++|++++++|+++|+.|
T Consensus 177 pg~~i~~~~~~~-~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 177 PGVDILSTYPNN-DYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred CCCCeEEecCCC-CEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 566676666544 45678999999999999999999999999999999999865
No 36
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.72 E-value=2.1e-17 Score=153.90 Aligned_cols=45 Identities=27% Similarity=0.298 Sum_probs=41.8
Q ss_pred CCeeccCCCCcchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhcC
Q psy15976 112 HDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATAR 156 (319)
Q Consensus 112 ~~~~~~~sGTS~AaP~vaG~~AL~l~~~p~lt~~~v~~~l~~ta~ 156 (319)
++.|..++|||||||+|||++|||++++|++++.+||++|+.+|+
T Consensus 247 ~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 247 GGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 456778899999999999999999999999999999999999884
No 37
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.70 E-value=4.7e-17 Score=148.39 Aligned_cols=38 Identities=34% Similarity=0.399 Sum_probs=32.2
Q ss_pred CCCceEeccc--CCCeeccCCCCcchHHHHHHHHHHHHhh
Q psy15976 101 FEHQVVTTDL--HHDCTSNHTGTSASAPLAAGICALALEA 138 (319)
Q Consensus 101 ~g~~i~st~~--~~~~~~~~sGTS~AaP~vaG~~AL~l~~ 138 (319)
||..|+++.. .++.|..++|||||||||||++||+|+.
T Consensus 190 PG~~i~s~~~~~~~~~~~~~sGTS~Atp~vaGvaAL~l~~ 229 (247)
T cd07491 190 PGENVEARDRPPLSNSFVTHTGSSVATALAAGLAALILYC 229 (247)
T ss_pred CCCceecCCcCCCCCCeeeeccHHHHHHHHHHHHHHHHHH
Confidence 7888888865 2456778999999999999999999974
No 38
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=99.70 E-value=8.3e-17 Score=149.50 Aligned_cols=43 Identities=28% Similarity=0.278 Sum_probs=39.3
Q ss_pred CCeeccCCCCcchHHHHHHHHHHHHhhCCCCCH-HHHHHHHHhh
Q psy15976 112 HDCTSNHTGTSASAPLAAGICALALEANPGLTW-RDMQHIVVAT 154 (319)
Q Consensus 112 ~~~~~~~sGTS~AaP~vaG~~AL~l~~~p~lt~-~~v~~~l~~t 154 (319)
.++|..++|||||||+|||++|||+|++|.+++ +||+++|++|
T Consensus 251 ~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 251 EGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred CCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 345667899999999999999999999999999 9999999875
No 39
>KOG4266|consensus
Probab=99.69 E-value=1.4e-16 Score=155.28 Aligned_cols=82 Identities=21% Similarity=0.302 Sum_probs=64.8
Q ss_pred ceEecccCCCeeccCCCCcchHHHHHHHHHHHHh----hCCCCCHHHHHHHHHhhcCCCCCCCCCcccCCCCCcccCcce
Q psy15976 104 QVVTTDLHHDCTSNHTGTSASAPLAAGICALALE----ANPGLTWRDMQHIVVATARPANLRAPDWATNGVGRNVSHSFG 179 (319)
Q Consensus 104 ~i~st~~~~~~~~~~sGTS~AaP~vaG~~AL~l~----~~p~lt~~~v~~~l~~ta~~~~~~~~~~~~~~~g~~~~~~~G 179 (319)
++...++.++|.. .||||.|+|.|||+++|+.+ +.--+++..+++.|.+.|.+....+- ..+|
T Consensus 388 ~v~GS~v~~GCr~-LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~NM------------fEQG 454 (1033)
T KOG4266|consen 388 DVMGSKVSTGCRS-LSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGPNM------------FEQG 454 (1033)
T ss_pred ccccCcccccchh-ccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCCch------------hhcc
Confidence 3344455578875 79999999999999999977 23337899999999999998653321 2679
Q ss_pred eeecCHHHHHHHHhccCcc
Q psy15976 180 YGLMDATAMVRLARQWKTV 198 (319)
Q Consensus 180 ~G~vda~~av~~a~~~~~~ 198 (319)
.|.+|..++.+..+.+++.
T Consensus 455 aGkldLL~syqiL~SYkP~ 473 (1033)
T KOG4266|consen 455 AGKLDLLESYQILKSYKPR 473 (1033)
T ss_pred CcchhHHHHHHHHHhcCCC
Confidence 9999999999999987753
No 40
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=99.61 E-value=3.6e-15 Score=144.22 Aligned_cols=57 Identities=23% Similarity=0.137 Sum_probs=46.1
Q ss_pred CCCceEeccc-CCCeeccCCCCcchHHHHHHHHHHHHh----hCCCCCHHHHHHHHHhhcCC
Q psy15976 101 FEHQVVTTDL-HHDCTSNHTGTSASAPLAAGICALALE----ANPGLTWRDMQHIVVATARP 157 (319)
Q Consensus 101 ~g~~i~st~~-~~~~~~~~sGTS~AaP~vaG~~AL~l~----~~p~lt~~~v~~~l~~ta~~ 157 (319)
||..|.++.. ....|..++|||||||||||++|||++ .+|++++.+||.+|+.||++
T Consensus 350 PG~~I~s~p~~~~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~ 411 (412)
T cd04857 350 PGGAIASVPNWTLQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKK 411 (412)
T ss_pred CCCcEEEcccCCCCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCcc
Confidence 4555655422 234567799999999999999999986 47899999999999999985
No 41
>KOG1153|consensus
Probab=99.46 E-value=9e-14 Score=131.84 Aligned_cols=91 Identities=14% Similarity=0.176 Sum_probs=66.8
Q ss_pred cccEEeCCCCCCcceeeecCCce---eeeecCCCC------CCCceEecccCC-CeeccCCCCcchHHHHHHHHHHHHhh
Q psy15976 69 HVAKRSADPSHHHHTRLISEPVV---TTTYSSGSS------FEHQVVTTDLHH-DCTSNHTGTSASAPLAAGICALALEA 138 (319)
Q Consensus 69 ~i~i~s~sP~d~~~~isvg~~~~---~~~~s~g~~------~g~~i~st~~~~-~~~~~~sGTS~AaP~vaG~~AL~l~~ 138 (319)
+-|-+..||..+.-+|+||+++. .+.||+.+. ||..|.|+...+ ..+...+|||||+|||||++|..|+.
T Consensus 355 ~eDAC~~SPass~~aITVGAst~~D~iA~FSN~G~CVdiFAPGv~IlSs~iGs~~at~ilSGTSMasPhvaG~aAy~ls~ 434 (501)
T KOG1153|consen 355 HEDACNSSPASSKKAITVGASTKNDTIAFFSNWGKCVDIFAPGVNILSSWIGSNNATAILSGTSMASPHVAGLAAYFLSL 434 (501)
T ss_pred chhhhccCcccccccEEecccccccchhhhcCccceeeeecCchhhhhhhhcCccchheeecccccCcchhhhHHHhhhc
Confidence 33444444655777888886544 446777664 888888888763 45667899999999999999999999
Q ss_pred CCC---------CCHHHHHHHHHhhcCCCC
Q psy15976 139 NPG---------LTWRDMQHIVVATARPAN 159 (319)
Q Consensus 139 ~p~---------lt~~~v~~~l~~ta~~~~ 159 (319)
.|. .++.+++..+..-..+..
T Consensus 435 ~~~~~~~f~n~~~s~~~lk~~~l~~~~~d~ 464 (501)
T KOG1153|consen 435 GPLPDSSFANDAGSPSELKKRLLKFKTQDL 464 (501)
T ss_pred CCCChHHhhhccCChHHhhhhhhccccccc
Confidence 883 378888877776666443
No 42
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.43 E-value=1e-12 Score=116.76 Aligned_cols=43 Identities=37% Similarity=0.520 Sum_probs=39.1
Q ss_pred CCeeccCCCCcchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q psy15976 112 HDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVAT 154 (319)
Q Consensus 112 ~~~~~~~sGTS~AaP~vaG~~AL~l~~~p~lt~~~v~~~l~~t 154 (319)
..++..++|||||||+|||++||+++++|++++++++.+|..+
T Consensus 199 ~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 199 GGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred CCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 4456778999999999999999999999999999999999764
No 43
>KOG1114|consensus
Probab=99.20 E-value=4e-11 Score=122.11 Aligned_cols=69 Identities=26% Similarity=0.212 Sum_probs=57.7
Q ss_pred eccCCCCcchHHHHHHHHHHHHh----hCCCCCHHHHHHHHHhhcCCCCCCCCCcccCCCCCcccCcceeeecCHHHHHH
Q psy15976 115 TSNHTGTSASAPLAAGICALALE----ANPGLTWRDMQHIVVATARPANLRAPDWATNGVGRNVSHSFGYGLMDATAMVR 190 (319)
Q Consensus 115 ~~~~sGTS~AaP~vaG~~AL~l~----~~p~lt~~~v~~~l~~ta~~~~~~~~~~~~~~~g~~~~~~~G~G~vda~~av~ 190 (319)
...|+|||||+|+++|.+||||+ .|-..|+..|+..|..||++.+..+ +...|.|++++.+|.+
T Consensus 490 ~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~id------------~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 490 SQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDID------------SFAQGQGMLQVDKAYE 557 (1304)
T ss_pred hhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCccc------------hhccCcceeehhHHHH
Confidence 34689999999999999999976 4677899999999999999875432 2367999999999998
Q ss_pred HHhcc
Q psy15976 191 LARQW 195 (319)
Q Consensus 191 ~a~~~ 195 (319)
...+.
T Consensus 558 yL~q~ 562 (1304)
T KOG1114|consen 558 YLAQS 562 (1304)
T ss_pred HHHHh
Confidence 76655
No 44
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.3e-09 Score=105.01 Aligned_cols=44 Identities=39% Similarity=0.505 Sum_probs=40.4
Q ss_pred eeccCCCCcchHHHHHHHHHHHHhhCC-CCCHHHHHHHHHhhcCC
Q psy15976 114 CTSNHTGTSASAPLAAGICALALEANP-GLTWRDMQHIVVATARP 157 (319)
Q Consensus 114 ~~~~~sGTS~AaP~vaG~~AL~l~~~p-~lt~~~v~~~l~~ta~~ 157 (319)
++..++||||++|+|+|++||+++.+| .+++.+++..+..++..
T Consensus 354 ~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~ 398 (508)
T COG1404 354 DYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL 398 (508)
T ss_pred ceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc
Confidence 378899999999999999999999999 79999999998887773
No 45
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.85 E-value=2.5e-09 Score=97.60 Aligned_cols=50 Identities=26% Similarity=0.188 Sum_probs=39.4
Q ss_pred CCCceEecccCCCeeccCCCCcchHHHHHHHHHHHHhhCCCCCHHHHHHHHHh
Q psy15976 101 FEHQVVTTDLHHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVA 153 (319)
Q Consensus 101 ~g~~i~st~~~~~~~~~~sGTS~AaP~vaG~~AL~l~~~p~lt~~~v~~~l~~ 153 (319)
||..|++ ..+.|..++|||||||||||++|||++++|++...++-.++..
T Consensus 190 PG~~i~s---~~~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~ 239 (247)
T cd07488 190 PGSNYNL---PDGKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIAL 239 (247)
T ss_pred eeeeEEC---CCCceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHH
Confidence 6666766 3345667899999999999999999999999986665555544
No 46
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.00091 Score=71.67 Aligned_cols=22 Identities=41% Similarity=0.397 Sum_probs=19.7
Q ss_pred cCCCCcchHHHHHHHHHHHHhh
Q psy15976 117 NHTGTSASAPLAAGICALALEA 138 (319)
Q Consensus 117 ~~sGTS~AaP~vaG~~AL~l~~ 138 (319)
...|||.|+|+.||++|||-|.
T Consensus 475 ~~GGTS~AtPltAGiiAdi~q~ 496 (1174)
T COG4934 475 VAGGTSLATPLTAGIIADIEQY 496 (1174)
T ss_pred EecccccccchHHHHHHHHHHH
Confidence 4589999999999999999774
No 47
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=96.27 E-value=0.004 Score=60.02 Aligned_cols=27 Identities=44% Similarity=0.347 Sum_probs=23.5
Q ss_pred eeccCCCCcchHHHHHHHHHHHHhhCC
Q psy15976 114 CTSNHTGTSASAPLAAGICALALEANP 140 (319)
Q Consensus 114 ~~~~~sGTS~AaP~vaG~~AL~l~~~p 140 (319)
.+....|||+|||++||++|||.|+..
T Consensus 273 ~~~~~gGTS~aaP~~Ag~~Al~n~~~~ 299 (361)
T cd04056 273 QWYLVGGTSAAAPLFAGLIALINQARL 299 (361)
T ss_pred eEEeeCCccHHHHHHHHHHHHHHHHhh
Confidence 344579999999999999999999876
No 48
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=88.07 E-value=3.8 Score=40.79 Aligned_cols=24 Identities=42% Similarity=0.875 Sum_probs=22.7
Q ss_pred CCCCCcEEEEecCCCCCCCccccc
Q psy15976 11 ITGKGVVITILDDGLEKDHPDLIQ 34 (319)
Q Consensus 11 ~tG~GV~VAVIDtGid~~HpdL~~ 34 (319)
+||+||+|||||||||+.||||+.
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~ 24 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRN 24 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHcc
Confidence 589999999999999999999984
No 49
>PF12975 DUF3859: Domain of unknown function (DUF3859); InterPro: IPR024331 This entry represents a functionally uncharacterised domain, which is found in bacterial proteins.; PDB: 3N6Y_B.
Probab=77.01 E-value=5.4 Score=32.51 Aligned_cols=58 Identities=21% Similarity=0.400 Sum_probs=30.2
Q ss_pred EEEEEeecCCCceEEEEECCCCCeeEecccCCCCCCCCCcccceeeeccccCCCCCccEEEEEEECCc
Q psy15976 244 ARVTLSAHRRGDLQIVLVSPAGTRATLLATRPHDSSKAGFNAWPFMSVHSWGEQPFGSWYLEIHNEGR 311 (319)
Q Consensus 244 v~v~i~h~~~gdl~i~L~SP~GT~s~l~~~~~~d~~~~~~~~~~f~s~~f~gE~~~G~W~l~i~d~~~ 311 (319)
|++-+.||.. |.|..-....+-..... .+-++|.|.+-.+--|...|.|++.|...++
T Consensus 59 lt~~i~HP~i---------p~~~~g~~~~~~~~~v~-~~~~~~~~~~f~~~~e~v~G~Wr~~i~~~g~ 116 (125)
T PF12975_consen 59 LTVCITHPGI---------PDGDKGDTVEPWQGEVY-VGSNDWDFYTFDTPWEPVPGEWRFTIELDGK 116 (125)
T ss_dssp EEEEEEEEEE---------TTS-EEEEEEEEE---T-T-S-EEEEEE--SGGG---EEEEEEEEETTE
T ss_pred EEEEEeCCCC---------CCCCCCCEECcEEEEec-CCCcceEEEEcCcccccCCceEEEEEEECCE
Confidence 5666667643 56655544433222221 3445677777777788889999999987765
No 50
>PF09315 DUF1973: Domain of unknown function (DUF1973); InterPro: IPR015394 These functionally uncharacterised domains are found in various eukaryotic calcium-dependent chloride channels.
Probab=75.41 E-value=11 Score=32.77 Aligned_cols=55 Identities=25% Similarity=0.361 Sum_probs=34.0
Q ss_pred EEeecCCCceEEEEECCCCCeeEecccCCCCCCCCCcccceeeeccccCCCCCccEEEEEEECC
Q psy15976 247 TLSAHRRGDLQIVLVSPAGTRATLLATRPHDSSKAGFNAWPFMSVHSWGEQPFGSWYLEIHNEG 310 (319)
Q Consensus 247 ~i~h~~~gdl~i~L~SP~GT~s~l~~~~~~d~~~~~~~~~~f~s~~f~gE~~~G~W~l~i~d~~ 310 (319)
.+.+.......|.|++|+|+...-.. .|. .+ .+.....-|-.-.|+|++.|.+..
T Consensus 34 ~v~w~~~~~p~i~L~~P~G~~~~~~~---~d~---~~---~~~~i~ipg~ae~G~W~y~i~~~~ 88 (179)
T PF09315_consen 34 TVTWQNSSPPSITLTDPSGTVYTTFT---TDS---NS---KTARIQIPGTAEVGTWTYSITNTS 88 (179)
T ss_pred EEEECCCCCceEEEECCCCCEEeeeE---Ecc---cc---cEEEEECCCCcccccEEEEEecCC
Confidence 34455557789999999999876511 121 11 122233335555899999997653
No 51
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=69.35 E-value=18 Score=27.44 Aligned_cols=53 Identities=9% Similarity=0.302 Sum_probs=30.2
Q ss_pred cCCCceEEEEECCCCCeeEecccCCCCCCCCCcccceeeeccccCCCCCccEEEEEEE
Q psy15976 251 HRRGDLQIVLVSPAGTRATLLATRPHDSSKAGFNAWPFMSVHSWGEQPFGSWYLEIHN 308 (319)
Q Consensus 251 ~~~gdl~i~L~SP~GT~s~l~~~~~~d~~~~~~~~~~f~s~~f~gE~~~G~W~l~i~d 308 (319)
+....+.|.|..|+|....-... ......|..... ..+--+.+.|+|+|++.-
T Consensus 33 ~~~~~~~v~i~dp~g~~v~~~~~--~~~~~~G~~~~~---~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 33 PANSPVTVTIKDPSGNEVFRWSV--NTTNENGIFSGS---FQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp ESSEEEEEEEEETTSEEEEEEEE--EETTCTTEEEEE---EE--SS---EEEEEEEEE
T ss_pred ccCCceEEEEECCCCCEEEEEEe--eeeCCCCEEEEE---EECCCCCCCEeEEEEEEE
Confidence 44567899999999987643322 011224544333 344455668999999987
No 52
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=56.53 E-value=11 Score=31.50 Aligned_cols=31 Identities=29% Similarity=0.377 Sum_probs=25.9
Q ss_pred cCCCCcchHHHHHHHHHHHHhhCCCCCHHHHH
Q psy15976 117 NHTGTSASAPLAAGICALALEANPGLTWRDMQ 148 (319)
Q Consensus 117 ~~sGTS~AaP~vaG~~AL~l~~~p~lt~~~v~ 148 (319)
.|.|=|= |++|.|.+|++++.+-..|+++|.
T Consensus 73 ~F~gdSd-A~ivrGL~aill~~~~G~t~~eI~ 103 (144)
T COG2166 73 HFFGDSD-ARIVRGLLAILLAAYSGKTAAEIL 103 (144)
T ss_pred EEeccch-hHHHHHHHHHHHHHHcCCCHHHHH
Confidence 3455554 799999999999999999999976
No 53
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=54.82 E-value=11 Score=23.24 Aligned_cols=14 Identities=43% Similarity=0.612 Sum_probs=11.6
Q ss_pred chHHHHHHHHHHHH
Q psy15976 123 ASAPLAAGICALAL 136 (319)
Q Consensus 123 ~AaP~vaG~~AL~l 136 (319)
.|||.+||++|-+.
T Consensus 14 LAAP~iagIi~s~i 27 (35)
T PF13940_consen 14 LAAPIIAGIIASLI 27 (35)
T ss_pred hHhHHHHHHHHHHH
Confidence 58999999988653
No 54
>PRK15019 CsdA-binding activator; Provisional
Probab=53.21 E-value=14 Score=30.99 Aligned_cols=31 Identities=29% Similarity=0.359 Sum_probs=26.6
Q ss_pred CCCCcchHHHHHHHHHHHHhhCCCCCHHHHHH
Q psy15976 118 HTGTSASAPLAAGICALALEANPGLTWRDMQH 149 (319)
Q Consensus 118 ~sGTS~AaP~vaG~~AL~l~~~p~lt~~~v~~ 149 (319)
+.|.| =|++|-|.+||+++..-..++++|..
T Consensus 79 f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 79 FFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 44555 58999999999999999999999875
No 55
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=52.78 E-value=77 Score=23.84 Aligned_cols=50 Identities=16% Similarity=0.355 Sum_probs=29.7
Q ss_pred CCCceEEEEECCCCCeeEecccCCCCCCCCCcccceeeeccccCCCCCccEEEEEEECCc
Q psy15976 252 RRGDLQIVLVSPAGTRATLLATRPHDSSKAGFNAWPFMSVHSWGEQPFGSWYLEIHNEGR 311 (319)
Q Consensus 252 ~~gdl~i~L~SP~GT~s~l~~~~~~d~~~~~~~~~~f~s~~f~gE~~~G~W~l~i~d~~~ 311 (319)
-.++|++.|++|+|+...+. ..|.. +|....+| -- ...|.++|.|.-.+.
T Consensus 30 G~~~~~v~i~~p~g~~~~~~---v~d~~-dGty~v~y-----~P-~~~G~~~i~V~~~g~ 79 (93)
T smart00557 30 GGGELEVEVTGPSGKKVPVE---VKDNG-DGTYTVSY-----TP-TEPGDYTVTVKFGGE 79 (93)
T ss_pred CCCcEEEEEECCCCCeeEeE---EEeCC-CCEEEEEE-----Ee-CCCEeEEEEEEECCE
Confidence 45889999999999654432 12222 34222233 22 234889999986554
No 56
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=51.20 E-value=16 Score=30.29 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=27.4
Q ss_pred CCCCcchHHHHHHHHHHHHhhCCCCCHHHHHHH
Q psy15976 118 HTGTSASAPLAAGICALALEANPGLTWRDMQHI 150 (319)
Q Consensus 118 ~sGTS~AaP~vaG~~AL~l~~~p~lt~~~v~~~ 150 (319)
|.|.| =|++|-|.+||+++.+-..++++|...
T Consensus 74 f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 74 FYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 55666 489999999999999999999998743
No 57
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=46.53 E-value=21 Score=29.60 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=27.2
Q ss_pred cCCCCcchHHHHHHHHHHHHhhCCCCCHHHHHH
Q psy15976 117 NHTGTSASAPLAAGICALALEANPGLTWRDMQH 149 (319)
Q Consensus 117 ~~sGTS~AaP~vaG~~AL~l~~~p~lt~~~v~~ 149 (319)
.+.|-| =|++|-|.+||+++..-..++++|..
T Consensus 68 ~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 68 ELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 345666 58999999999999999999999874
No 58
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=45.47 E-value=23 Score=28.76 Aligned_cols=31 Identities=29% Similarity=0.310 Sum_probs=25.1
Q ss_pred CCCCcchHHHHHHHHHHHHhhCCCCCHHHHHH
Q psy15976 118 HTGTSASAPLAAGICALALEANPGLTWRDMQH 149 (319)
Q Consensus 118 ~sGTS~AaP~vaG~~AL~l~~~p~lt~~~v~~ 149 (319)
+.|.|= |++|-|.+||+++..-..++++|..
T Consensus 60 f~adSd-a~ivkGl~all~~~~~g~t~~eI~~ 90 (125)
T PF02657_consen 60 FRADSD-ARIVKGLLALLLEVLNGQTPEEILA 90 (125)
T ss_dssp EEEEES-SHHHHHHHHHHHHHTTT-BHHHHHH
T ss_pred EEecCc-cHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 455555 6799999999999999999999764
No 59
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=36.67 E-value=42 Score=23.96 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=15.1
Q ss_pred eccccCCCCCccEEEEEEEC
Q psy15976 290 SVHSWGEQPFGSWYLEIHNE 309 (319)
Q Consensus 290 s~~f~gE~~~G~W~l~i~d~ 309 (319)
|.........|.|+++|.|+
T Consensus 34 S~k~~~~~~~G~WrV~V~~~ 53 (66)
T PF11141_consen 34 SSKQNFPDQPGDWRVEVVDE 53 (66)
T ss_pred EEeecCCCCCcCEEEEEEcC
Confidence 33333448999999999986
No 60
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=31.24 E-value=43 Score=20.16 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=15.7
Q ss_pred CCCCCccEEEEEEECCcc
Q psy15976 295 GEQPFGSWYLEIHNEGRY 312 (319)
Q Consensus 295 gE~~~G~W~l~i~d~~~~ 312 (319)
-|...|.+++.|.|.|+.
T Consensus 7 qEDTDgn~qITIeD~GPK 24 (30)
T PF07492_consen 7 QEDTDGNFQITIEDTGPK 24 (30)
T ss_pred ccccCCCcEEEEecCCCe
Confidence 478899999999999874
No 61
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=30.96 E-value=37 Score=18.74 Aligned_cols=17 Identities=18% Similarity=0.429 Sum_probs=13.4
Q ss_pred cchHHHHHHHHHHHHhh
Q psy15976 122 SASAPLAAGICALALEA 138 (319)
Q Consensus 122 S~AaP~vaG~~AL~l~~ 138 (319)
...||++.|++-.+.+.
T Consensus 3 ~iIaPi~VGvvl~l~~~ 19 (21)
T PF13955_consen 3 TIIAPIVVGVVLTLFDH 19 (21)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHHHh
Confidence 45799999999877653
No 62
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=29.21 E-value=54 Score=22.47 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=22.3
Q ss_pred CCCCcchHHHHHHHHH------HHHhhCCCCCHHHHHHHHH
Q psy15976 118 HTGTSASAPLAAGICA------LALEANPGLTWRDMQHIVV 152 (319)
Q Consensus 118 ~sGTS~AaP~vaG~~A------L~l~~~p~lt~~~v~~~l~ 152 (319)
+-||=+..-.+....+ -+++.+|.|+.+||+..|.
T Consensus 14 i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 14 IRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp ETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred EcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 5666666555555443 2677899999999998875
No 63
>PF11903 DUF3423: Protein of unknown function (DUF3423); InterPro: IPR021831 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 73 to 118 amino acids in length.
Probab=28.15 E-value=78 Score=23.21 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=23.1
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhhcCCCC
Q psy15976 132 CALALEANPGLTWRDMQHIVVATARPAN 159 (319)
Q Consensus 132 ~AL~l~~~p~lt~~~v~~~l~~ta~~~~ 159 (319)
++.+.+.||+++..+|+.+|...+....
T Consensus 35 iGr~~E~np~l~~~~I~~~l~~~~~~~~ 62 (72)
T PF11903_consen 35 IGRAAEDNPDLSYSFIEEMLLAAEEEEE 62 (72)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHhhhccc
Confidence 4567889999999999999998876543
No 64
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=27.32 E-value=79 Score=26.19 Aligned_cols=53 Identities=25% Similarity=0.523 Sum_probs=31.7
Q ss_pred CCCceEEEEECC--CCCeeEecccCCCCCCCCCcccceeeecc-ccCCCC----CccEEEEE
Q psy15976 252 RRGDLQIVLVSP--AGTRATLLATRPHDSSKAGFNAWPFMSVH-SWGEQP----FGSWYLEI 306 (319)
Q Consensus 252 ~~gdl~i~L~SP--~GT~s~l~~~~~~d~~~~~~~~~~f~s~~-f~gE~~----~G~W~l~i 306 (319)
....|+|.+-.| .|++.+|.-..-......|. |.|.... -.||+| -|+|+|+|
T Consensus 87 ~~~~i~I~f~~PV~pG~tv~V~l~~v~NP~~~G~--Y~f~v~a~p~G~~p~~~ylG~~rl~i 146 (146)
T PF10989_consen 87 DGRTITITFDEPVPPGTTVTVVLSPVRNPRSGGT--YQFNVTAFPPGDNPIGQYLGTWRLSI 146 (146)
T ss_pred CCCEEEEEeCCCCCCCCEEEEEEEeeeCCCCCCe--EEEEEEEECCCCCcccceeeEEEEEC
Confidence 466788887664 46766664322212222354 4566554 478886 49999986
No 65
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=23.75 E-value=1.3e+02 Score=19.05 Aligned_cols=25 Identities=12% Similarity=0.036 Sum_probs=21.1
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhhc
Q psy15976 131 ICALALEANPGLTWRDMQHIVVATA 155 (319)
Q Consensus 131 ~~AL~l~~~p~lt~~~v~~~l~~ta 155 (319)
.+..+++..|+++...|+..|....
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 5667889999999999999998644
No 66
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=23.13 E-value=96 Score=19.67 Aligned_cols=24 Identities=17% Similarity=0.172 Sum_probs=19.0
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhhc
Q psy15976 132 CALALEANPGLTWRDMQHIVVATA 155 (319)
Q Consensus 132 ~AL~l~~~p~lt~~~v~~~l~~ta 155 (319)
+--+++..|+++...|++.|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 445788999999999999997654
No 67
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=22.68 E-value=2.6e+02 Score=23.91 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=23.5
Q ss_pred eeEEEEEEEeecCCCce-----EEEEECCCCCeeEecc
Q psy15976 240 EHVQARVTLSAHRRGDL-----QIVLVSPAGTRATLLA 272 (319)
Q Consensus 240 e~v~v~v~i~h~~~gdl-----~i~L~SP~GT~s~l~~ 272 (319)
+.+.+.|..-|...++- ++.+++|+|++..|..
T Consensus 19 ~~~~v~~~~Gh~~~~~~~~~~~~l~~~~~dg~~~~l~~ 56 (215)
T PF10670_consen 19 EEVTVELYFGHPFPGDEFPPDKSLQVISPDGKRIDLPP 56 (215)
T ss_pred CEEEEEEEECCCCCCccccccCceEEECCCCeeecccc
Confidence 45666667777666555 7899999999766644
No 68
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=22.49 E-value=2.8e+02 Score=19.34 Aligned_cols=55 Identities=18% Similarity=0.352 Sum_probs=28.6
Q ss_pred EEEEEeecCCCceEEEEECCCCCeeEecccCCCCCCCCCcccceeeeccccCCCCCccEEEEEE
Q psy15976 244 ARVTLSAHRRGDLQIVLVSPAGTRATLLATRPHDSSKAGFNAWPFMSVHSWGEQPFGSWYLEIH 307 (319)
Q Consensus 244 v~v~i~h~~~gdl~i~L~SP~GT~s~l~~~~~~d~~~~~~~~~~f~s~~f~gE~~~G~W~l~i~ 307 (319)
|+|++++. .+|+.+.|.-++|....-...+ ....+.. ...... -.+.|+|.|+|.
T Consensus 15 l~i~l~~~-~~d~dl~l~~~~g~~~~~~d~~---~~~~~~~--~~i~~~---~~~~GtYyi~V~ 69 (70)
T PF04151_consen 15 LTIDLSGG-SGDADLYLYDSNGNSLASYDDS---SQSGGND--ESITFT---APAAGTYYIRVY 69 (70)
T ss_dssp EEEEECET-TSSEEEEEEETTSSSCEECCCC---TCETTSE--EEEEEE---ESSSEEEEEEEE
T ss_pred EEEEEcCC-CCCeEEEEEcCCCCchhhheec---CCCCCCc--cEEEEE---cCCCEEEEEEEE
Confidence 44455443 2388899999998532211111 1111221 111211 178999999985
No 69
>PF06242 DUF1013: Protein of unknown function (DUF1013); InterPro: IPR010421 This is a family of uncharacterised proteins found in Proteobacteria.
Probab=21.73 E-value=86 Score=25.93 Aligned_cols=61 Identities=20% Similarity=0.290 Sum_probs=39.6
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhhcCCCCC--CCCCcccCCCCCcccCcceeee---cCHHHHHHHHh
Q psy15976 131 ICALALEANPGLTWRDMQHIVVATARPANL--RAPDWATNGVGRNVSHSFGYGL---MDATAMVRLAR 193 (319)
Q Consensus 131 ~~AL~l~~~p~lt~~~v~~~l~~ta~~~~~--~~~~~~~~~~g~~~~~~~G~G~---vda~~av~~a~ 193 (319)
+++-++..||+|+-.||..++-.|...+.. ...-| |.++..+-.-.-.|+ ++...+|+.|+
T Consensus 73 aI~wlvk~hPel~DaQI~kLiGTTK~TI~~IR~rtHW--N~~Ni~P~DPV~LGLCsQ~dLd~~v~kA~ 138 (140)
T PF06242_consen 73 AIAWLVKNHPELSDAQIAKLIGTTKPTIEAIRDRTHW--NSANIKPRDPVTLGLCSQIDLDAAVEKAA 138 (140)
T ss_pred HHHHHHhcCCcccHHHHHHHhcCcHHHHHHHhccccc--ccccCCcCCCceeccccHHHHHHHHHHHh
Confidence 678889999999999999998766543321 12224 334444444455666 67777777664
No 70
>PF15363 DUF4596: Domain of unknown function (DUF4596)
Probab=21.61 E-value=90 Score=20.59 Aligned_cols=11 Identities=27% Similarity=0.709 Sum_probs=8.4
Q ss_pred CCCCCccEEEE
Q psy15976 295 GEQPFGSWYLE 305 (319)
Q Consensus 295 gE~~~G~W~l~ 305 (319)
.-+|+|.||+-
T Consensus 30 ~sSpqGeWTiv 40 (46)
T PF15363_consen 30 CSSPQGEWTIV 40 (46)
T ss_pred cCCCCCceEEE
Confidence 44789999974
No 71
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=21.26 E-value=2.2e+02 Score=21.89 Aligned_cols=44 Identities=20% Similarity=0.366 Sum_probs=25.6
Q ss_pred ceEEEEECCCCCeeEecccCCCCCCCCCcccceeeeccccCCCCCccEEEEEEE
Q psy15976 255 DLQIVLVSPAGTRATLLATRPHDSSKAGFNAWPFMSVHSWGEQPFGSWYLEIHN 308 (319)
Q Consensus 255 dl~i~L~SP~GT~s~l~~~~~~d~~~~~~~~~~f~s~~f~gE~~~G~W~l~i~d 308 (319)
..++.+-+|.-..+.|. . .|++|......+- ....|.|.+.|..
T Consensus 6 g~~FrvwAP~A~~V~l~----G-----dFn~W~~~~~~m~-k~~~G~W~~~i~~ 49 (99)
T cd02854 6 GVTYREWAPNAEEVYLI----G-----DFNNWDRNAHPLK-KDEFGVWEITIPP 49 (99)
T ss_pred eEEEEEECCCCCEEEEE----c-----cCCCCCCcCcccE-ECCCCEEEEEECC
Confidence 46788888888888775 1 2334432111111 1246888888864
No 72
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=20.56 E-value=2.3e+02 Score=30.76 Aligned_cols=51 Identities=18% Similarity=0.262 Sum_probs=30.0
Q ss_pred eecCCCceEEEEECCCCCeeEecccCCCCCCCCCcccceeeeccccCCCCCccEEEEEEEC
Q psy15976 249 SAHRRGDLQIVLVSPAGTRATLLATRPHDSSKAGFNAWPFMSVHSWGEQPFGSWYLEIHNE 309 (319)
Q Consensus 249 ~h~~~gdl~i~L~SP~GT~s~l~~~~~~d~~~~~~~~~~f~s~~f~gE~~~G~W~l~i~d~ 309 (319)
.|... ...|.|++|+|+. .. +...+-...+ -....=|-.-.|+|++.|.+.
T Consensus 522 tw~~~-~p~i~l~dP~G~~---~~----~~~~d~~~~~--a~l~ipg~a~~G~W~y~l~~~ 572 (863)
T TIGR00868 522 TWEFL-KPEIFLQDPSGKS---TS----DFLVDKLNKM--AYLQIPGTAKVGTWTYSLQAS 572 (863)
T ss_pred EcCCC-CceEEEECCCCCc---cc----cceEeecceE--EEEEcCCCCccceeEEEEecc
Confidence 45433 7899999999995 11 1111111111 223344655689999999765
No 73
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=20.55 E-value=2.4e+02 Score=20.71 Aligned_cols=30 Identities=20% Similarity=0.424 Sum_probs=23.7
Q ss_pred EEEEEeecCCCceEEEEECCCCCeeEeccc
Q psy15976 244 ARVTLSAHRRGDLQIVLVSPAGTRATLLAT 273 (319)
Q Consensus 244 v~v~i~h~~~gdl~i~L~SP~GT~s~l~~~ 273 (319)
|++.++....|-|.|--+-++|+...|...
T Consensus 9 v~~~~~~~~~~Yl~l~~~~~~G~v~~L~Pn 38 (83)
T PF14326_consen 9 VRFRVTSNRDGYLYLFYIDADGKVTLLFPN 38 (83)
T ss_pred EEEEEEeCCCeEEEEEEECCCCCEEEEecC
Confidence 444555578889999999999999888754
Done!