RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15976
(319 letters)
>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET:
DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus}
SCOP: b.18.1.20 c.41.1.1
Length = 471
Score = 243 bits (622), Expect = 1e-77
Identities = 130/223 (58%), Positives = 151/223 (67%), Gaps = 1/223 (0%)
Query: 89 PVVTTTYSSGSSFEHQVVTTDLHHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQ 148
+ TTYSSG+ E Q+VTTDL CT +HTGTSASAPLAAGI AL LEAN LTWRDMQ
Sbjct: 228 STLATTYSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQ 287
Query: 149 HIVVATARPANLRAPDWATNGVGRNVSHSFGYGLMDATAMVRLARQWKTVPEQFKCEASP 208
H+VV T++PA+L A DWATNGVGR VSHS+GYGL+DA AMV LA+ W TV Q KC
Sbjct: 288 HLVVQTSKPAHLNADDWATNGVGRKVSHSYGYGLLDAGAMVALAQNWTTVAPQRKCI-VE 346
Query: 209 SEPSEMERPIPAKSSIRLKLDVTECPHVNYLEHVQARVTLSAHRRGDLQIVLVSPAGTRA 268
+ + + + E H+ LEHVQAR+TLS +RRGDL I L+SP GTR+
Sbjct: 347 ILVEPKDIGKRLEVRKAVTACLGEPNHITRLEHVQARLTLSYNRRGDLAIHLISPMGTRS 406
Query: 269 TLLATRPHDSSKAGFNAWPFMSVHSWGEQPFGSWYLEIHNEGR 311
TLLA RPHD S GFN W FM+ HSW E P G W LEI N
Sbjct: 407 TLLAARPHDYSADGFNDWAFMTTHSWDEDPAGEWVLEIENTSE 449
Score = 93.6 bits (232), Expect = 1e-21
Identities = 36/61 (59%), Positives = 47/61 (77%)
Query: 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPMPRYDQIFP 60
+NV+ AW +G TG G+V++ILDDG+EK+HPDL NYDP AS+DVN D DP PRY Q+
Sbjct: 25 LNVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYDPGASFDVNDQDPDPQPRYTQMND 84
Query: 61 D 61
+
Sbjct: 85 N 85
>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT
like protease, serine protease; HET: NDG; 1.90A
{Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB:
1r64_A* 1ot5_A*
Length = 503
Score = 218 bits (556), Expect = 2e-67
Identities = 68/224 (30%), Positives = 112/224 (50%), Gaps = 7/224 (3%)
Query: 92 TTTYSSGSSFEHQVVTTDLHHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIV 151
+ S + ++D++ C+++H GTSA+APLAAG+ L LEANP LTWRD+Q++
Sbjct: 242 VMAVTYSSGSGEYIHSSDINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLS 301
Query: 152 VATARPANL-RAPDWATNGVGRNVSHSFGYGLMDATAMVRLARQWKTVPEQFKCEASPSE 210
+ +A DW + +G+ SH +G+G +DA ++ +++ W+ V Q
Sbjct: 302 ILSAVGLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIEMSKTWENVNAQTWFYLPT-- 359
Query: 211 PSEMERPIPAKSSIRLKLDVTEC----PHVNYLEHVQARVTLSAHRRGDLQIVLVSPAGT 266
+ + ++ + ++E + +EHV V + RG + L+SPAG
Sbjct: 360 LYVSQSTNSTEETLESVITISEKSLQDANFKRIEHVTVTVDIDTEIRGTTTVDLISPAGI 419
Query: 267 RATLLATRPHDSSKAGFNAWPFMSVHSWGEQPFGSWYLEIHNEG 310
+ L RP D S GF W FMSV WGE G W +++
Sbjct: 420 ISNLGVVRPRDVSSEGFKDWTFMSVAHWGENGVGDWKIKVKTTE 463
Score = 93.2 bits (231), Expect = 2e-21
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPMPRYD 56
+NV W ITG GVV I+DDGL+ ++ DL N+ S+D N + + P PR
Sbjct: 41 INVLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCAEGSWDFNDNTNLPKPRLS 96
>2oxa_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas
sobria} PDB: 3hjr_A
Length = 600
Score = 192 bits (487), Expect = 1e-56
Identities = 59/251 (23%), Positives = 93/251 (37%), Gaps = 33/251 (13%)
Query: 92 TTTYSSGSSFEHQVVTTDLHHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIV 151
T ++ H D D GTS++ P +G AL + A P L+ RD++ ++
Sbjct: 306 NRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLL 365
Query: 152 VATARPANLRAPD--------------------WATNGVGRNVSHSFGYGLMDATAMVRL 191
+A + + W N G S ++G+GL+D + L
Sbjct: 366 ARSATRVDAKHQPVMVSYTSSTGKVRDVKGLEGWERNAAGMWFSPTYGFGLIDVNKALEL 425
Query: 192 ARQWKTVPEQFKCEASPSEPSEMERPIPAKSSIRLKLDVTECPHVNYLEHVQARVTLSAH 251
A + +P + + I T +E VQ V+L
Sbjct: 426 AANHQPLPPLVQLPWQKINVTGSAAAIAD-VGNSPTSSTTRIATPLTVEAVQVMVSLDHQ 484
Query: 252 RRGDLQIVLVSPAGTRATLLAT------RPHDSSKAGFNA------WPFMSVHSWGEQPF 299
R DL I LVSPAGTR+ LL+ + D + GF +S +GE
Sbjct: 485 RLPDLLIELVSPAGTRSILLSPFNSLVGQSLDQQQLGFVRTKGLRDMRMLSNKFYGESAQ 544
Query: 300 GSWYLEIHNEG 310
G+W LE+ +
Sbjct: 545 GTWRLEVTDVA 555
Score = 86.9 bits (214), Expect = 4e-19
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPMPRYD 56
+N+ A G+ G GV + ++DDGL HPDL N P S +V + DDP P
Sbjct: 57 LNLWWAHRTGVLGHGVNVAVVDDGLAIAHPDLADNVRP-GSKNVVTGSDDPTPTDP 111
>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide,
hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP:
c.41.1.1
Length = 671
Score = 57.8 bits (139), Expect = 2e-09
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 11/93 (11%)
Query: 120 GTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLRAPDWATNGVGRNVSHSFG 179
GTS +AP G+ A+ L+ P ++ ++ TA N D H G
Sbjct: 379 GTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGWD-----------HDTG 427
Query: 180 YGLMDATAMVRLARQWKTVPEQFKCEASPSEPS 212
YGL+ A ++ + E+F+ + ++ +
Sbjct: 428 YGLVKLDAALQGPLPTQGGVEEFQVVVTDAKGN 460
Score = 47.8 bits (113), Expect = 3e-06
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPMPRYDQ 57
+ V E +G +++ ++D G++ HPDL Y ++ P
Sbjct: 141 IGVTQQLWEEASGTNIIVAVVDTGVDGTHPDLEGQVIA--GYRPAFDEELPAGTDSS 195
>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel,
hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1
PDB: 1wme_A 1wmf_A
Length = 434
Score = 56.9 bits (137), Expect = 3e-09
Identities = 37/225 (16%), Positives = 71/225 (31%), Gaps = 27/225 (12%)
Query: 92 TTTYSSGSSFEHQVVTTDLHHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIV 151
T S+ SS H + GTS + P+ AG A E
Sbjct: 225 TFILSARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITP---- 280
Query: 152 VATARPANLRA--PDWATNGVGRNVSHSFGYGLMDATAMVRLARQWKTVPEQFKCEASPS 209
+P+ L+A A + + + G+G + + +A ++ S S
Sbjct: 281 ----KPSLLKAALIAGAADIGLGYPNGNQGWGRVTLDKSLNVAYVNESSS------LSTS 330
Query: 210 EPSEMERPIPAKSSIRLKLDVTECPHVNYLEHVQARVTLSAHRRGDLQIVLVSPAGTRAT 269
+ + A +++ L ++ P A T S DL +V+ +P GT
Sbjct: 331 QKATYSFTATAGKPLKISLVWSDAP---------ASTTASVTLVNDLDLVITAPNGT--Q 379
Query: 270 LLATRPHDSSKAGFNAWPFMSVHSWGEQPFGSWYLEIHNEGRYFG 314
+ ++ + G++ +E+ G
Sbjct: 380 YVGNDFTSPYNDNWDGRNNVENVFINAPQSGTYTIEVQAYNVPVG 424
Score = 41.5 bits (97), Expect = 2e-04
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 1 MNVQGAWEE-GITGKGVVITILDDGLEKDHPDLIQNYDP----LASYDVNSHDD 49
+ A G+ G+G ++ + D GL+ D + A Y + ++
Sbjct: 8 VKADVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGKITALYALGRTNN 61
>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli}
Length = 347
Score = 50.1 bits (120), Expect = 3e-07
Identities = 11/81 (13%), Positives = 29/81 (35%), Gaps = 12/81 (14%)
Query: 119 TGTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLRAPDWATNGVGRNVSHSF 178
+GTS + + +G+ A NP T +++ ++ +A
Sbjct: 269 SGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLVDK------------VT 316
Query: 179 GYGLMDATAMVRLARQWKTVP 199
+++A + + + +P
Sbjct: 317 EGRVLNAEKAISMFCKKNYIP 337
Score = 33.1 bits (76), Expect = 0.093
Identities = 5/57 (8%), Positives = 13/57 (22%), Gaps = 5/57 (8%)
Query: 1 MNVQGAWEE-GITGKGVVITILDDGLEKDHPDLIQNYDP---LASYDVNSHDDDPMP 53
+ + VV++++D G+ L +
Sbjct: 30 IGLTETTMSLTDKNTPVVVSVVDSGVA-FIGGLSDSEFAKFSFTQDGSPFPVKKSEA 85
>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like
protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP:
c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A*
Length = 310
Score = 49.6 bits (119), Expect = 4e-07
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 120 GTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLRAPDWATNGVGRNVSHSFG 179
GTS + P +G+ A NP L+ ++ + A+ G ++ G
Sbjct: 248 GTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKS----VDIKGGYGAAIGDDYASG 303
Query: 180 YGLMDA 185
+G
Sbjct: 304 FGFARV 309
Score = 42.3 bits (100), Expect = 1e-04
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASY--DVNSHDDDPM 52
+ G G+ I +LD G+ HPDL+ N + + ++
Sbjct: 13 IYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNNVEQCKDFTGATTPINNSCT 66
>3t41_A Epidermin leader peptide processing serine protea; structural
genomics, center for structural genomics of infec
diseases, csgid; 1.95A {Staphylococcus aureus} PDB:
3qfh_A
Length = 471
Score = 48.0 bits (114), Expect = 2e-06
Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 13/79 (16%)
Query: 120 GTSASAPLAAGICALALEA-NPGLTWRDMQHIVVATARPANLRAPDWATNGVGRNVSHSF 178
GT+ + P +G AL ++ + ++ N + +
Sbjct: 405 GTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNKPFS------------RY 452
Query: 179 GYGLMDATAMVRLARQWKT 197
G+G +D + +A Q +
Sbjct: 453 GHGELDVYKALNVANQKAS 471
Score = 43.7 bits (103), Expect = 4e-05
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 2 NVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLAS--YDVNSHDDDP 51
N ++++ I I+D G+ K+H DL N+ + +N
Sbjct: 134 NNGASYDDLPKHANTKIAIIDTGVMKNHDDLKNNFSTDSKNLVPLNGFRGTE 185
>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP:
c.41.1.1
Length = 280
Score = 47.6 bits (114), Expect = 2e-06
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPM 52
AW+ G I ++D G++ HPDL YD +D DPM
Sbjct: 18 TYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGKVIK--GYDFVDNDYDPM 67
Score = 44.1 bits (105), Expect = 2e-05
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 15/70 (21%)
Query: 120 GTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLRAPDWATNGVGRNVSHSFG 179
GTS ++P AG+ AL +++ + TA + F
Sbjct: 224 GTSMASPHVAGLAALLASQGR--NNIEIRQAIEQTADKISGTGTY-------------FK 268
Query: 180 YGLMDATAMV 189
YG +++ V
Sbjct: 269 YGRINSYNAV 278
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert
beta barrel domain hydrolase; HET: PMS; 1.40A
{Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Length = 441
Score = 47.8 bits (114), Expect = 2e-06
Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 15/115 (13%)
Query: 89 PVVTTTYS----SGSSFEHQVVTTDLHHDCTSNHTGTSASAPLAAGICALALEANPGLTW 144
P V+ + + ++ + + GTS + P +G+ L +P +
Sbjct: 332 PSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSA 391
Query: 145 RDMQHIVVATARPANLRAPDWATNGVGRNVSHSFGYGLMDATAMVRLARQWKTVP 199
++ + ATA ++ D + GYG+++A A + T P
Sbjct: 392 SQVRAALNATADDLSVAGRD-----------NQTGYGMINAVAAKAYLDESCTGP 435
Score = 40.5 bits (95), Expect = 5e-04
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Query: 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPM 52
+ + I I+D G ++ H DL N + + P
Sbjct: 11 VGATVLSD--SQAGNRTICIIDSGYDRSHNDLNANNVTGTNNSGTGNWYQPG 60
>3afg_A Subtilisin-like serine protease; propeptide, thermococcus
kodakaraensis, hydrolas protease; 2.00A {Thermococcus
kodakarensis}
Length = 539
Score = 47.9 bits (114), Expect = 3e-06
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPM 52
+ W G G G+ I I+D G++ HPDL + D + P
Sbjct: 126 VMATNMWNLGYDGSGITIGIIDTGIDASHPDLQGKV--IGWVDFVNGKTTPY 175
Score = 46.0 bits (109), Expect = 1e-05
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 120 GTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLRAPDWATNGVGRNVSHSFG 179
GT+ + P AGI AL L+A+P T ++ ++ TA ++G
Sbjct: 357 GTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADI----------VKPDEIADIAYG 406
Query: 180 YGLMDATAMVRLA 192
G ++A
Sbjct: 407 AGRVNAYKAAYYD 419
>1kn6_A Prohormone convertase 1; beta-alpha-beta-BETA-alpha-beta,
hydrolase; NMR {Mus musculus} SCOP: d.58.3.3
Length = 90
Score = 43.8 bits (103), Expect = 3e-06
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 59 FPDLYHLEHKHVAKRSADPSHHHHTRLISEPVV 91
+ Y +HK +RS + H RL + V
Sbjct: 44 LENHYLFKHKSHPRRSRRSALHITKRLSDDDRV 76
>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein
inhibitor, hydrolase; 1.10A {Bacillus licheniformis}
SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A
1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A
2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ...
Length = 274
Score = 46.4 bits (111), Expect = 4e-06
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 14/71 (19%)
Query: 120 GTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLRAPDWATNGVGRNVSHSFG 179
GTS ++P AG AL L +P L+ +++ + +TA +G S +G
Sbjct: 218 GTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATY------------LGS--SFYYG 263
Query: 180 YGLMDATAMVR 190
GL++ A +
Sbjct: 264 KGLINVEAAAQ 274
Score = 44.8 bits (107), Expect = 1e-05
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPM 52
+ +G G V + +LD G++ HPDL + + + +
Sbjct: 11 IKADKVQAQGFKGANVKVAVLDTGIQASHPDL----NVVGGASFVAGEAYNT 58
>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A
{Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E*
1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E*
1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E*
1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ...
Length = 281
Score = 46.4 bits (111), Expect = 5e-06
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 14/71 (19%)
Query: 120 GTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLRAPDWATNGVGRNVSHSFG 179
GTS ++P AG AL L +P T ++ + T +G S +G
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTK------------LGD--SFYYG 264
Query: 180 YGLMDATAMVR 190
GL++ A +
Sbjct: 265 KGLINVQAAAQ 275
Score = 44.5 bits (106), Expect = 2e-05
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPM 52
+ +G TG V + ++D G++ HPDL + + +P
Sbjct: 11 IKAPALHSQGYTGSNVKVAVIDSGIDSSHPDL----KVAGGASMVPSETNPF 58
>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A
{Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A
Length = 340
Score = 46.6 bits (111), Expect = 5e-06
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 16/77 (20%)
Query: 120 GTSASAPLAAGICALAL----EANPGLTWRDMQHIVVATARPANLRAPDWATNGVGRNVS 175
GTS + P +G+ AL + N LT +++ ++V+T P +
Sbjct: 274 GTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSP------------FNGRLD 321
Query: 176 HSFGYGLMDATAMVRLA 192
+ G G++DA A V
Sbjct: 322 RALGSGIVDAEAAVNSV 338
Score = 45.8 bits (109), Expect = 7e-06
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 9/87 (10%)
Query: 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDL----IQNYD----PLASYDVNSHDDDPM 52
+ W+ G TG+ VV+ ++D G+ H DL + YD S D + D DP
Sbjct: 19 VKADKVWDMGFTGQNVVVAVVDTGIL-HHRDLNANVLPGYDFISNSQISLDGDGRDADPF 77
Query: 53 PRYDQIFPDLYHLEHKHVAKRSADPSH 79
D +RS H
Sbjct: 78 DEGDWFDNWACGGRPDPRKERSDSSWH 104
>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus}
SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A
1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A
1q5p_A* 1st3_A 1c9n_A*
Length = 269
Score = 46.0 bits (110), Expect = 5e-06
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 14/71 (19%)
Query: 120 GTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLRAPDWATNGVGRNVSHSFG 179
GTS + P AG AL + NP + +++ + TA ++ +G
Sbjct: 213 GTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSL--------------GSTNLYG 258
Query: 180 YGLMDATAMVR 190
GL++A A R
Sbjct: 259 SGLVNAEAATR 269
Score = 40.6 bits (96), Expect = 4e-04
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPM 52
+ A G+TG GV + +LD G+ HPDL + +
Sbjct: 11 VQAPAAHNRGLTGSGVKVAVLDTGIS-THPDL----NIRGGASFVPGEPSTQ 57
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase,
hydrolase, phosphoprotein, protease; 3.14A {Drosophila
melanogaster}
Length = 1354
Score = 46.4 bits (109), Expect = 8e-06
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 16/85 (18%)
Query: 120 GTSASAPLAAGICALALEA----NPGLTWRDMQHIVVATARPANLRAPDWATNGVGRNVS 175
GTS +AP AG AL + N + ++ + TA P
Sbjct: 460 GTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYVDPFA---------- 509
Query: 176 HSFGYGLMDATAMVRLARQWKTVPE 200
G+GL++ + + +
Sbjct: 510 --QGHGLLNVEKAFEHLTEHRQSKD 532
Score = 28.6 bits (63), Expect = 3.7
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 12 TGKGVVITILDDGLEKDHPDL 32
G+ V I I D G++ L
Sbjct: 34 DGRDVTIAIFDSGVDPRATGL 54
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus
pyogenes} PDB: 3eif_A*
Length = 926
Score = 46.2 bits (109), Expect = 1e-05
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDL 32
V+ E+ G G V+ ++D G +K+H
Sbjct: 4 SQVKTLQEKAGKGAGTVVAVIDAGFDKNHEAW 35
Score = 32.7 bits (74), Expect = 0.16
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 120 GTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPA 158
GTS SAPL AGI L + + A+
Sbjct: 405 GTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKV 443
>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces
vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E
Length = 279
Score = 44.1 bits (105), Expect = 2e-05
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPM 52
+ AW+ G G I I+D G++ +HPDL +D +D P
Sbjct: 18 IQAPQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGKVVG--GWDFVDNDSTPQ 66
Score = 42.1 bits (100), Expect = 9e-05
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 15/71 (21%)
Query: 120 GTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLRAPDWATNGVGRNVSHSFG 179
GTS + P AG+ L + +++ + TA + +
Sbjct: 223 GTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKISGTGTY-------------WA 267
Query: 180 YGLMDATAMVR 190
G ++A V+
Sbjct: 268 KGRVNAYKAVQ 278
>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease,
intracellular proteinase regulat; HET: CSX 1PE; 1.56A
{Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A*
Length = 327
Score = 43.8 bits (104), Expect = 3e-05
Identities = 12/53 (22%), Positives = 21/53 (39%)
Query: 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPMP 53
+ W G G +I ++D G + DHPDL + + + D+
Sbjct: 28 VEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNF 80
Score = 35.4 bits (82), Expect = 0.020
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 16/75 (21%)
Query: 120 GTSASAPLAAGICALALEANP-----GLTWRDMQHIVVATARPANLRAPDWATNGVGRNV 174
GT+ +AP AG AL + L+ ++ +V A P A
Sbjct: 248 GTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAE--------- 298
Query: 175 SHSFGYGLMDATAMV 189
G+ +D +
Sbjct: 299 --GNGFLTLDLVERI 311
>4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase,
patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A
Length = 360
Score = 43.6 bits (103), Expect = 5e-05
Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 13/78 (16%)
Query: 119 TGTSASAPLAAGICALAL----EANPGLTWRDMQHIVVATARPANLRAPDWATNGVGRNV 174
TGTS +AP+ GI AL + + + ++ ++ TA P + +
Sbjct: 289 TGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEVVEEPER------ 342
Query: 175 SHSFGYGLMDATAMVRLA 192
G ++ +++
Sbjct: 343 ---CLRGFVNIPGAMKVL 357
Score = 35.9 bits (83), Expect = 0.015
Identities = 5/61 (8%), Positives = 14/61 (22%)
Query: 2 NVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPMPRYDQIFPD 61
+ + + + I I+D + + + P F
Sbjct: 37 GLADLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQS 96
Query: 62 L 62
+
Sbjct: 97 I 97
>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase;
1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A
2zwo_A
Length = 395
Score = 43.2 bits (102), Expect = 6e-05
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 10/79 (12%)
Query: 120 GTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLR------APDWATNGVGRN 173
GT+ + P +G+ AL A + + +R A D G
Sbjct: 319 GTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTG---- 374
Query: 174 VSHSFGYGLMDATAMVRLA 192
+GYG++ A V+ A
Sbjct: 375 WDADYGYGVVRAALAVQAA 393
Score = 39.7 bits (93), Expect = 0.001
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 1 MNVQGAWEEGI-TGKGVVITILDDGLEKDHPDLIQNYDP---LASYDVNSHDDDPM 52
+ W + + + +LD G++ DHPDL N V++ D
Sbjct: 90 VKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLAANIAWCVSTLRGKVSTKLRDCA 145
>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A
{Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A
2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A
Length = 320
Score = 42.8 bits (101), Expect = 9e-05
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 10/79 (12%)
Query: 120 GTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLR------APDWATNGVGRN 173
GT+ + P +G+ AL A + + +R A D G
Sbjct: 244 GTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTG---- 299
Query: 174 VSHSFGYGLMDATAMVRLA 192
+GYG++ A V+ A
Sbjct: 300 WDADYGYGVVRAALAVQAA 318
Score = 41.2 bits (97), Expect = 2e-04
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 1 MNVQGAWEEGI-TGKGVVITILDDGLEKDHPDLIQNYDP---LASYDVNSHDDDPM 52
+ W + + + +LD G++ DHPDL N V++ D
Sbjct: 15 VKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLAANIAWCVSTLRGKVSTKLRDCA 70
>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart
disease, hypercholest low density lipoprotein receptor,
autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens}
PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B
3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A
Length = 546
Score = 38.7 bits (90), Expect = 0.002
Identities = 26/124 (20%), Positives = 38/124 (30%), Gaps = 15/124 (12%)
Query: 113 DCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLRAP--DWATNGV 170
C + +GTS +A AGI A+ L A P LT A LR ++ V
Sbjct: 225 TCFVSQSGTSQAAAHVAGIAAMMLSAEPELT-------------LAELRQRLIHFSAKDV 271
Query: 171 GRNVSHSFGYGLMDATAMVRLARQWKTVPEQFKCEASPSEPSEMERPIPAKSSIRLKLDV 230
++ + L Q C S S R A + ++
Sbjct: 272 INEAWFPEDQRVLTPNLVAALPPSTHGAGWQLFCRTVWSAHSGPTRMATAIARCAPDEEL 331
Query: 231 TECP 234
C
Sbjct: 332 LSCS 335
Score = 27.2 bits (60), Expect = 8.6
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 12 TGKGVVITILDDGLEKDHPDL 32
G V + +LD ++ DH ++
Sbjct: 24 GGSLVEVYLLDTSIQSDHREI 44
>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation,
psychrotrophic, subtilisin-like proteinase, depentent,
hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*
Length = 284
Score = 38.3 bits (90), Expect = 0.002
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 106 VTTDLHHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLRAPDW 165
+ + + +GTS + P AG+ AL L+ N GLT + ++ + A +
Sbjct: 204 IKSAWYDGGYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASENKVSDTRG 263
Query: 166 ATN 168
TN
Sbjct: 264 TTN 266
Score = 28.3 bits (64), Expect = 3.0
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 5 GAWEEGITGKGVVITILDDGLEKDHPDL 32
+ G GV ++D G+ +H +
Sbjct: 20 RNYNANFDGFGVTAYVIDTGVNNNHEEF 47
>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL
receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}
Length = 692
Score = 38.0 bits (88), Expect = 0.003
Identities = 26/124 (20%), Positives = 38/124 (30%), Gaps = 15/124 (12%)
Query: 113 DCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLRAP--DWATNGV 170
C + +GTS +A AGI A+ L A P LT A LR ++ V
Sbjct: 377 TCFVSQSGTSQAAAHVAGIAAMMLSAEPELT-------------LAELRQRLIHFSAKDV 423
Query: 171 GRNVSHSFGYGLMDATAMVRLARQWKTVPEQFKCEASPSEPSEMERPIPAKSSIRLKLDV 230
++ + L Q C S S R A + ++
Sbjct: 424 INEAWFPEDQRVLTPNLVAALPPSTHGAGWQLFCRTVWSAHSGPTRMATAIARCAPDEEL 483
Query: 231 TECP 234
C
Sbjct: 484 LSCS 487
Score = 28.0 bits (62), Expect = 5.0
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 12 TGKGVVITILDDGLEKDHPDL 32
G V + +LD ++ DH ++
Sbjct: 176 GGSLVEVYLLDTSIQSDHREI 196
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.013
Identities = 7/48 (14%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 29 HPDLIQNYDPLASYDVNSHDDDPMPRYDQIFPDL-YHLEHKHVAKRSA 75
H ++ +Y+ ++D + + +Y + + +HL++ +R
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQY--FYSHIGHHLKNIEHPERMT 491
Score = 31.0 bits (69), Expect = 0.57
Identities = 10/70 (14%), Positives = 26/70 (37%), Gaps = 8/70 (11%)
Query: 13 GKGVVITILDDGLEKDHPDLIQNY-----DPLASYDVNSHDDDPMPRYDQIFPDLYHL-- 65
+ +V +++ L ++ L+ P + D + +Q+F Y++
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-YNVSR 133
Query: 66 EHKHVAKRSA 75
++ R A
Sbjct: 134 LQPYLKLRQA 143
Score = 30.6 bits (68), Expect = 0.73
Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 35/116 (30%)
Query: 8 EEGITGKGVVITILDDGLEKDHPDLIQNY-----DPL-----ASYDVNSHDDDPMPRYDQ 57
E +T ++I+ + + +D N+ D L +S +V + +D+
Sbjct: 320 REVLTTNPRRLSIIAESI-RDGLATWDNWKHVNCDKLTTIIESSLNVLE-PAEYRKMFDR 377
Query: 58 --IFPDLYHLEHKHVAKRSADPSHHHHTRLISEPVVTTTYSSGSSFEHQVVTTDLH 111
+FP I +++ + + VV LH
Sbjct: 378 LSVFPP-------SA--------------HIPTILLSLIWFDVIKSDVMVVVNKLH 412
>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K,
subtilase, psychrotrophic, psychrophilic, hydrolase;
1.80A {Serratia SP}
Length = 278
Score = 35.6 bits (83), Expect = 0.014
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 113 DCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATARP 157
T+ +GTS ++P AG+ AL L+ NP L+ + +++ A
Sbjct: 215 SATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATA 259
Score = 27.9 bits (63), Expect = 4.0
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 12 TGKGVVITILDDGLEKDHPDL 32
G GV ++D G+ H +
Sbjct: 29 DGSGVTAFVIDTGVLNTHNEF 49
>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding,
inhibitor, hydrolase-hydro inhibitor complex; HET: PMS;
1.95A {Thermus aquaticus}
Length = 276
Score = 35.6 bits (83), Expect = 0.015
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 113 DCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLRAPDWAT----- 167
T GTS + P AG+ AL LE NP T + ++ A L +
Sbjct: 213 TATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATTGRLSGIGSGSPNRLL 272
Query: 168 -NGV 170
+ +
Sbjct: 273 YSLL 276
Score = 27.5 bits (62), Expect = 6.0
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 12 TGKGVVITILDDGLEKDHPDL 32
TG+GV + ++D G+ H +
Sbjct: 29 TGRGVNVYVIDTGIRTTHREF 49
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET:
NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Length = 649
Score = 35.5 bits (81), Expect = 0.022
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 118 HTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPA-NLRAPDWATNGVGRNVSH 176
+GTS +AP AAGI A+ A+P + ++ ++ TA P N R P ++
Sbjct: 422 ESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKDSDNNKAATPL 481
Query: 177 SFGYGLMDATAMV 189
G G +D +
Sbjct: 482 DMGAGHVDPNRAL 494
Score = 28.6 bits (63), Expect = 3.2
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 4 QGAWEEGITGKGVVITILDDGLEKDHPD 31
G W G+ V++ +LD G+ +
Sbjct: 14 SGLWPASGLGQDVIVAVLDSGIWPESAS 41
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET:
DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Length = 621
Score = 32.3 bits (73), Expect = 0.21
Identities = 7/58 (12%), Positives = 17/58 (29%), Gaps = 4/58 (6%)
Query: 4 QGAWEEGITGKGVVITILDDGLEKDHPDLI-QNYDPLASY---DVNSHDDDPMPRYDQ 57
+V+ +LD G+ + P + + P + ++ R
Sbjct: 12 LTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFRCNRKII 69
Score = 31.2 bits (70), Expect = 0.48
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 119 TGTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPAN 159
+GTS S P GI NP + ++ ++ TA P N
Sbjct: 412 SGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMN 452
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.63
Identities = 44/197 (22%), Positives = 68/197 (34%), Gaps = 60/197 (30%)
Query: 153 ATARPANLRAPDWATNGVGRNVSHSFGYGLMDATAMVRLARQ-----WKTVPEQFKCEAS 207
+ RP L ++G ++ H L+ TA +A Q K +PE + A+
Sbjct: 4 YSTRPLTL------SHG---SLEHVL---LV-PTASFFIASQLQEQFNKILPEPTEGFAA 50
Query: 208 PSEP-SEME-------------RPIPAKSSIR-LKLDVTECPHVNYLE----HVQARVTL 248
EP + E P + L L +TE YLE H A L
Sbjct: 51 DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF-ENCYLEGNDIHALAAKLL 109
Query: 249 SAHRRGDLQIVLVSPAGTRATLLATRP----HDS-----SKAGFNAWPFMSVHSWGEQPF 299
+ ++ + A ++A RP +S G NA +++ +G Q
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEG-NA-QLVAI--FGGQ-- 163
Query: 300 GSWYLEIHNEGRYFGEL 316
G N YF EL
Sbjct: 164 G-------NTDDYFEEL 173
Score = 28.9 bits (64), Expect = 3.3
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 22/57 (38%)
Query: 251 HRRGDL------Q--IVLVSPAGTRATLLATR---PHDSSKAGFNAWPFMSVHSWGE 296
+G L Q + L+ A L ++ P D++ AG HS GE
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFE--DLKSKGLIPADATFAG---------HSLGE 1766
>1lsh_B Lipovitellin (LV-2); vitellogenin, lipoprotein, plasma apolipoprote
apolipoprotein B, APOB; HET: PLD UPL; 1.90A
{Ichthyomyzon unicuspis} SCOP: f.7.1.1
Length = 319
Score = 29.1 bits (64), Expect = 2.0
Identities = 17/167 (10%), Positives = 38/167 (22%), Gaps = 43/167 (25%)
Query: 66 EHKHVAKRSADPSHHHHTRLISEPVVTTTYSSGSSFEHQVVTTDLHHDCTSNHTGTSASA 125
++R + S +++ SS SS T + +
Sbjct: 6 RKPQTSRRH----TPASSSSSSSSSSSSSSSSSSSDSDM----------TVSAESFEKHS 51
Query: 126 PLAAGICALALEAN--------------PGLTWRDMQHIVVATARPANLRA--------- 162
I A+ A+ + + V + + +
Sbjct: 52 KPKVVIVLRAVRADGKQQGLQTTLYYGLTSNGLPKAKIVAVELSDLSVWKLCAKFRLSAH 111
Query: 163 ------PDWATNGVGRNVSHSFGYGLMDATAMVRLARQWKTVPEQFK 203
W N G + + R+ +W +P +
Sbjct: 112 MKAKAAIGWGKNCQQYRAMLEASTGNLQSHPAARVDIKWGRLPSSLQ 158
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 2.5
Identities = 7/16 (43%), Positives = 9/16 (56%), Gaps = 6/16 (37%)
Query: 124 SAPLAAGICALALEAN 139
SAP ALA++A
Sbjct: 36 SAP------ALAIKAT 45
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane,
phosphoprotein, nucleotide-binding, alternative
splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Length = 428
Score = 28.5 bits (63), Expect = 2.8
Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 2/73 (2%)
Query: 41 SYDVNSHDDDPMPRYDQIFPDLYHLEHKHVAKRSADPSHHHHTR--LISEPVVTTTYSSG 98
S VN D D Y Q+ + + K + +R + H+ R + P T G
Sbjct: 210 SGKVNPKDLDSKYAYIQVTHVIPFFDEKELQERKTEFERSHNIRRFMFEMPFTQTGKRQG 269
Query: 99 SSFEHQVVTTDLH 111
E T L
Sbjct: 270 GVEEQCKRRTILT 282
>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A
{Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A
2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A
2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A*
3gt4_A* 3l1k_A 3osz_A ...
Length = 279
Score = 27.9 bits (63), Expect = 4.5
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 12 TGKGVVITILDDGLEKDHPDL 32
G+G + ++D G+E HP+
Sbjct: 29 AGQGSCVYVIDTGIEASHPEF 49
Score = 27.2 bits (61), Expect = 6.5
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 119 TGTSASAPLAAGICALALEANP 140
+GTS + P AG+ A +
Sbjct: 221 SGTSMATPHVAGLAAYLMTLGK 242
>3f7m_A Alkaline serine protease VER112; verticillium psalliotae,
cuticle- degrading protease, nematodes, hydrolase,
secreted, zymogen; 1.60A {Lecanicillium psalliotae}
PDB: 3f7o_A
Length = 279
Score = 27.9 bits (63), Expect = 4.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 12 TGKGVVITILDDGLEKDHPDL 32
G G + ++D G+E HPD
Sbjct: 30 AGAGACVYVIDTGVEDTHPDF 50
Score = 26.8 bits (60), Expect = 8.5
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 106 VTTDLHHDCTSNHTGTSASAPLAAGICALALEANP 140
+T+ T+ +GTS + P AG+ A
Sbjct: 209 ITSTWIGGRTNTISGTSMATPHIAGLAAYLFGLEG 243
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.412
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,128,822
Number of extensions: 307849
Number of successful extensions: 888
Number of sequences better than 10.0: 1
Number of HSP's gapped: 867
Number of HSP's successfully gapped: 76
Length of query: 319
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 225
Effective length of database: 4,077,219
Effective search space: 917374275
Effective search space used: 917374275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)