RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15976
(319 letters)
>d1p8ja1 b.18.1.20 (A:443-578) Furin, C-terminal domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 136
Score = 112 bits (280), Expect = 4e-31
Identities = 58/120 (48%), Positives = 67/120 (55%), Gaps = 9/120 (7%)
Query: 197 TVPEQFKCEASPSEPSEMERPIPAKSSIRLKLDVTECP----HVNYLEHVQARVTLSAHR 252
TV Q KC P + ++ VT C H+ LEHVQAR+TLS +R
Sbjct: 1 TVAPQRKCIVEILVE-----PKDIGKRLEVRKAVTACLGEPNHITRLEHVQARLTLSYNR 55
Query: 253 RGDLQIVLVSPAGTRATLLATRPHDSSKAGFNAWPFMSVHSWGEQPFGSWYLEIHNEGRY 312
RGDL I L+SP GTR+TLLA RPHD S GFN W FM+ HSW E P G W LEI N
Sbjct: 56 RGDLAIHLISPMGTRSTLLAARPHDYSADGFNDWAFMTTHSWDEDPAGEWVLEIENTSEA 115
>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 334
Score = 101 bits (251), Expect = 3e-25
Identities = 79/165 (47%), Positives = 97/165 (58%)
Query: 31 DLIQNYDPLASYDVNSHDDDPMPRYDQIFPDLYHLEHKHVAKRSADPSHHHHTRLISEPV 90
+ Q L S V + + + + + +
Sbjct: 169 GVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQFGNVPWYSEACSST 228
Query: 91 VTTTYSSGSSFEHQVVTTDLHHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHI 150
+ TTYSSG+ E Q+VTTDL CT +HTGTSASAPLAAGI AL LEAN LTWRDMQH+
Sbjct: 229 LATTYSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHL 288
Query: 151 VVATARPANLRAPDWATNGVGRNVSHSFGYGLMDATAMVRLARQW 195
VV T++PA+L A DWATNGVGR VSHS+GYGL+DA AMV LA+ W
Sbjct: 289 VVQTSKPAHLNADDWATNGVGRKVSHSYGYGLLDAGAMVALAQNW 333
Score = 67.5 bits (163), Expect = 2e-13
Identities = 36/64 (56%), Positives = 48/64 (75%)
Query: 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPMPRYDQIFP 60
+NV+ AW +G TG G+V++ILDDG+EK+HPDL NYDP AS+DVN D DP PRY Q+
Sbjct: 24 LNVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYDPGASFDVNDQDPDPQPRYTQMND 83
Query: 61 DLYH 64
+ +
Sbjct: 84 NRHG 87
>d2id4a1 b.18.1.20 (A:461-601) Kexin, C-terminal domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 141
Score = 95.5 bits (237), Expect = 8e-25
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 14/124 (11%)
Query: 192 ARQWKTVPEQFKCEASPSEPSEMERPIPAKSSIRLKLDVTECP----HVNYLEHVQARVT 247
A+ W +P + +++ S + ++ + ++E + +EHV V
Sbjct: 4 AQTWFYLPTLYVSQSTNS----------TEETLESVITISEKSLQDANFKRIEHVTVTVD 53
Query: 248 LSAHRRGDLQIVLVSPAGTRATLLATRPHDSSKAGFNAWPFMSVHSWGEQPFGSWYLEIH 307
+ RG + L+SPAG + L RP D S GF W FMSV WGE G W +++
Sbjct: 54 IDTEIRGTTTVDLISPAGIISNLGVVRPRDVSSEGFKDWTFMSVAHWGENGVGDWKIKVK 113
Query: 308 NEGR 311
Sbjct: 114 TTEN 117
>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 339
Score = 89.1 bits (219), Expect = 9e-21
Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 2/147 (1%)
Query: 52 MPRYDQIFPDLYHLEHKHVAKRSADPSHHHHTRLISEPVVTTTYSSGSSFEH-QVVTTDL 110
+ + + H SE + SS + ++D+
Sbjct: 193 NGGTRGDNCNYDGYTNSIYSITIGAIDHKDLHPPYSEGCSAVMAVTYSSGSGEYIHSSDI 252
Query: 111 HHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLRA-PDWATNG 169
+ C+++H GTSA+APLAAG+ L LEANP LTWRD+Q++ + +A A DW +
Sbjct: 253 NGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSA 312
Query: 170 VGRNVSHSFGYGLMDATAMVRLARQWK 196
+G+ SH +G+G +DA ++ +++ W+
Sbjct: 313 MGKKYSHRYGFGKIDAHKLIEMSKTWE 339
Score = 66.7 bits (161), Expect = 4e-13
Identities = 32/139 (23%), Positives = 49/139 (35%), Gaps = 1/139 (0%)
Query: 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPMPRYDQIFP 60
+NV W ITG GVV I+DDGL+ ++ DL N+ S+D N + + P PR +
Sbjct: 33 INVLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCAEGSWDFNDNTNLPKPRLSDDYH 92
Query: 61 DLYHLEHKHVAKRSADPSHHHHTRLISEPVVTTTYSSGSSFEHQVVTTDLHH-DCTSNHT 119
K + + + + E + L D S
Sbjct: 93 GTRCAGEIAAKKGNNFCGVGVGYNAKISGIRILSGDITTEDEAASLIYGLDVNDIYSCSW 152
Query: 120 GTSASAPLAAGICALALEA 138
G + G L +A
Sbjct: 153 GPADDGRHLQGPSDLVKKA 171
>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans
[TaxId: 93466]}
Length = 671
Score = 64.3 bits (155), Expect = 4e-12
Identities = 44/273 (16%), Positives = 79/273 (28%), Gaps = 44/273 (16%)
Query: 40 ASYDVNSHDDDPMPRYDQIFPDLYHLEHKHVAKRSADPSHHHHTRLISEP---VVTTTYS 96
++ + S P + L++ R A S + P +++T
Sbjct: 294 SAGNNTSDSHHQYPAGYPGVIQVAALDYYGGTFRVAGFSSRSDGVSVGAPGVTILSTVPG 353
Query: 97 SGS--SFEHQVVTTDLHHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVAT 154
S H + + GTS +AP G+ A+ L+ P ++ ++ T
Sbjct: 354 EDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENT 413
Query: 155 ARPANLRAPDWATNGVGRNVSHSFGYGLMDATAMVRLARQWKTVPEQFKCEASPSEPSEM 214
A N D H GYGL+ A ++ + E+F+ +
Sbjct: 414 AFDFNGNGWD-----------HDTGYGLVKLDAALQGPLPTQGGVEEFQVVVT------- 455
Query: 215 ERPIPAKSSIRLKLDVTECPHVNYLEHVQARVTLSAHRRGDLQIVLVSPAGT-RATLLAT 273
D V + R G P G R + +
Sbjct: 456 --------------DAKGNFGVPTVFVSMMRDN------GSCYYAKTGPDGIARFPHIDS 495
Query: 274 RPHDSSKAGFNAWPFMSVHSWGEQPFGSWYLEI 306
+D G + W GE G + + +
Sbjct: 496 GTYDIFVGGPDHWDRALAPYDGESIPGGYAIAL 528
Score = 50.4 bits (119), Expect = 2e-07
Identities = 17/168 (10%), Positives = 45/168 (26%), Gaps = 5/168 (2%)
Query: 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPMPRYDQIFP 60
+ V E +G +++ ++D G++ HPDL A Y ++ P
Sbjct: 141 IGVTQQLWEEASGTNIIVAVVDTGVDGTHPDLEGQVI--AGYRPAFDEELPAGTDSSYGG 198
Query: 61 DLYHLEHKHVAKRSADP---SHHHHTRLISEPVVTTTYSSGSSFEHQVVTTDLHHDCTSN 117
+A + +++ + G + ++
Sbjct: 199 SAGTHVAGTIAAKKDGKGIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATD 258
Query: 118 HTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLRAPDW 165
H + + ++ +VV+ + +
Sbjct: 259 HGAKVMNHSWGGWGYSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQY 306
>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens,
Novo/BPN' [TaxId: 1390]}
Length = 281
Score = 62.6 bits (151), Expect = 6e-12
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 14/89 (15%)
Query: 107 TTDLHHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLRAPDWA 166
+ L + + GTS ++P AG AL L +P T ++ + T
Sbjct: 206 QSTLPGNKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL-------- 257
Query: 167 TNGVGRNVSHSFGYGLMDATAMVRLARQW 195
S +G GL++ A +
Sbjct: 258 ------GDSFYYGKGLINVQAAAQHHHHH 280
Score = 53.0 bits (126), Expect = 1e-08
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPMPRYDQI 58
+ +G TG V + ++D G++ HPDL + + +P +
Sbjct: 11 IKAPALHSQGYTGSNVKVAVIDSGIDSSHPDL----KVAGGASMVPSETNPFQDNNSH 64
>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]}
Length = 269
Score = 59.9 bits (144), Expect = 5e-11
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 14/80 (17%)
Query: 111 HHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLRAPDWATNGV 170
++ GTS + P AG AL + NP + +++ + TA
Sbjct: 204 PGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSL------------ 251
Query: 171 GRNVSHSFGYGLMDATAMVR 190
++ +G GL++A A R
Sbjct: 252 --GSTNLYGSGLVNAEAATR 269
Score = 48.0 bits (113), Expect = 4e-07
Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 5/82 (6%)
Query: 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPMPRYDQIFP 60
+ A G+TG GV + +LD G+ HPDL + +
Sbjct: 11 VQAPAAHNRGLTGSGVKVAVLDTGIS-THPDL----NIRGGASFVPGEPSTQDGNGHGTH 65
Query: 61 DLYHLEHKHVAKRSADPSHHHH 82
+ + + +
Sbjct: 66 VAGTIAALNNSIGVLGVAPSAE 87
>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg
[TaxId: 1423]}
Length = 274
Score = 57.3 bits (137), Expect = 4e-10
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 14/79 (17%)
Query: 111 HHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLRAPDWATNGV 170
+ + GTS ++P AG AL L +P L+ +++ + +TA
Sbjct: 209 PTNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATY------------- 255
Query: 171 GRNVSHSFGYGLMDATAMV 189
S +G GL++ A
Sbjct: 256 -LGSSFYYGKGLINVEAAA 273
Score = 54.2 bits (129), Expect = 4e-09
Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 4/69 (5%)
Query: 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPMPRYDQIFP 60
+ +G G V + +LD G++ HPDL + + + +
Sbjct: 11 IKADKVQAQGFKGANVKVAVLDTGIQASHPDL----NVVGGASFVAGEAYNTDGNGHGTH 66
Query: 61 DLYHLEHKH 69
+
Sbjct: 67 VAGTVAALD 75
>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1
{Pseudoalteromonas sp. AS-11 [TaxId: 247492]}
Length = 435
Score = 55.1 bits (131), Expect = 4e-09
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 119 TGTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLRAPDWATNGVGRNVSHSF 178
GTS + P +G+ L +P + ++ + ATA ++ D +
Sbjct: 366 NGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAGRD-----------NQT 414
Query: 179 GYGLMDATAMVRLARQWKTVP 199
GYG+++A A + T P
Sbjct: 415 GYGMINAVAAKAYLDESCTGP 435
Score = 43.9 bits (102), Expect = 2e-05
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Query: 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPM 52
+ + I I+D G ++ H DL N + + P
Sbjct: 11 VGATVLSD--SQAGNRTICIIDSGYDRSHNDLNANNVTGTNNSGTGNWYQPG 60
>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId:
1421]}
Length = 309
Score = 53.7 bits (127), Expect = 8e-09
Identities = 17/118 (14%), Positives = 32/118 (27%), Gaps = 1/118 (0%)
Query: 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPMPRYDQIFP 60
+ G G+ I +LD G+ HPDL+ N + + + + D+
Sbjct: 13 IYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNNVEQCKDFTGATTPINNSC-TDRNGH 71
Query: 61 DLYHLEHKHVAKRSADPSHHHHTRLISEPVVTTTYSSGSSFEHQVVTTDLHHDCTSNH 118
+ S + SGS + + H +
Sbjct: 72 GTHVAGTALADGGSDQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATA 129
Score = 51.4 bits (121), Expect = 5e-08
Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 106 VTTDLHHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLRAPDW 165
V + ++ + +GTS + P +G+ A NP L+ ++ + A+ +
Sbjct: 234 VYSTWYNGGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKS--VDIKGG 291
Query: 166 ATNGVGRNVSHSFGYG 181
+G + + FG+
Sbjct: 292 YGAAIGDDYASGFGFA 307
>d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus
novosp. MN-32, kumamolisin [TaxId: 198803]}
Length = 357
Score = 50.1 bits (118), Expect = 1e-07
Identities = 12/51 (23%), Positives = 18/51 (35%)
Query: 7 WEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPMPRYDQ 57
+ EG+ G+G I I+ G D L Q + L +Q
Sbjct: 17 FPEGLDGQGQCIAIIALGGGYDETSLAQYFASLGVSAPQVVSVSVDGATNQ 67
Score = 32.4 bits (72), Expect = 0.058
Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 13/90 (14%)
Query: 112 HDCTSNHTGTSASAPLAAGICALALEA--------NPGLTWRDMQ--HIVVATARPANLR 161
T+ GTSA APL A + A + NP L + H + R
Sbjct: 268 DGETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEGNNDIANR 327
Query: 162 APDWATNGVGRNVSHSFGYGLMDATAMVRL 191
A + G G + G G +++
Sbjct: 328 ARIY-QAGPGWD--PCTGLGSPIGIRLLQA 354
>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp.,
AK.1 [TaxId: 1409]}
Length = 280
Score = 49.6 bits (117), Expect = 2e-07
Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Query: 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLAS-YDVNSHDDDPMPRYDQIF 59
AW+ G I ++D G++ HPDL D + D +
Sbjct: 18 TYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGKVIKGYDFVDNDYDPMDLNNHGTHVA 77
Query: 60 PDLYH 64
Sbjct: 78 GIAAA 82
Score = 47.6 bits (112), Expect = 7e-07
Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 15/79 (18%)
Query: 111 HHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLRAPDWATNGV 170
+ + +GTS ++P AG+ AL +++ + TA +
Sbjct: 215 TGNRYAYMSGTSMASPHVAGLAALLASQGR--NNIEIRQAIEQTADKISGTGTY------ 266
Query: 171 GRNVSHSFGYGLMDATAMV 189
F YG +++ V
Sbjct: 267 -------FKYGRINSYNAV 278
>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris
[TaxId: 2026]}
Length = 279
Score = 48.2 bits (113), Expect = 4e-07
Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 15/80 (18%)
Query: 111 HHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLRAPDWATNGV 170
++ +GTS + P AG+ L + +++ + TA +
Sbjct: 214 PTSTYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKIS----------- 260
Query: 171 GRNVSHSFGYGLMDATAMVR 190
+ G ++A V+
Sbjct: 261 --GTGTYWAKGRVNAYKAVQ 278
Score = 45.9 bits (107), Expect = 3e-06
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 1 MNVQGAWEEGITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPMPRYDQIFP 60
+ AW+ G G I I+D G++ +HPDL + +D +D P
Sbjct: 18 IQAPQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGKV--VGGWDFVDNDSTPQNGNGHGTH 74
Query: 61 DLYHLEHKH 69
Sbjct: 75 CAGIAAAVT 83
>d1kn6a_ d.58.3.3 (A:) Prohormone convertase 1 pro-domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 73
Score = 44.4 bits (105), Expect = 5e-07
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 59 FPDLYHLEHKHVAKRSADPSHHHHTRLISEPVV 91
+ Y +HK +RS + H RL + V
Sbjct: 34 LENHYLFKHKSHPRRSRRSALHITKRLSDDDRV 66
>d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43,
N-terminal domain {Bacillus sp. KSM-KP43 [TaxId:
109322]}
Length = 318
Score = 46.0 bits (107), Expect = 2e-06
Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 16/120 (13%)
Query: 77 PSHHHHTRLISEPVVTTTYSSGSSFEHQVVTTDLHHDCTSNHTGTSASAPLAAGICALAL 136
P+ + T S+ SS H + GTS + P+ AG A
Sbjct: 210 PTKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLR 269
Query: 137 EANPGLTWRD-----MQHIVVATARPANLRAPDWATNGVGRNVSHSFGYGLMDATAMVRL 191
E ++ ++A A L P+ + G+G + + +
Sbjct: 270 EHFVKNRGITPKPSLLKAALIAGAADIGLGYPN-----------GNQGWGRVTLDKSLNV 318
Score = 45.6 bits (106), Expect = 3e-06
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 1/57 (1%)
Query: 1 MNVQGAWEE-GITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPMPRYD 56
+ A G+ G+G ++ + D GL+ D + D
Sbjct: 8 VKADVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGKITALYALGRTNNAND 64
>d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium
album), strain limber [TaxId: 37998]}
Length = 279
Score = 42.8 bits (99), Expect = 3e-05
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 111 HHDCTSNHTGTSASAPLAAGICALALEANPGLTWRDMQHIVVATARPANLRAPDWAT 167
T + +GTS + P AG+ A + ++I TA +L + T
Sbjct: 213 IGGSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACRYI-ADTANKGDLSNIPFGT 268
Score = 41.2 bits (95), Expect = 7e-05
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 12 TGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPMPRYD 56
G+G + ++D G+E HP+ + +Y +S D + +
Sbjct: 29 AGQGSCVYVIDTGIEASHPEFEGRAQMVKTYYYSSRDGNGHGTHC 73
>d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas
sp., sedolisin [TaxId: 306]}
Length = 369
Score = 41.1 bits (95), Expect = 1e-04
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 8/92 (8%)
Query: 112 HDCTSNHTGTSASAPLAAGICALALEANPG-LTWRDMQHIVVATARPANLRAPDWATNGV 170
+ GTS ++P+ G+ A AN L + ++ P+ + NG
Sbjct: 276 YGQLQQIGGTSLASPIFVGLWARLQSANSNSLGFPAASFYSAISSTPSLVHDVKSGNNGY 335
Query: 171 GRNV-------SHSFGYGLMDATAMVRLARQW 195
G + G+G +D + R
Sbjct: 336 GGYGYNAGTGWDYPTGWGSLDIAKLSAYIRSN 367
Score = 30.3 bits (67), Expect = 0.27
Identities = 5/52 (9%), Positives = 12/52 (23%)
Query: 10 GITGKGVVITILDDGLEKDHPDLIQNYDPLASYDVNSHDDDPMPRYDQIFPD 61
T + I+ G +Q + + + + D
Sbjct: 21 APTAANTTVGIITIGGVSQTLQDLQQFTSANGLASVNTQTIQTGSSNGDYSD 72
>d1hbna1 a.89.1.1 (A:270-549) Alpha chain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 280
Score = 29.3 bits (66), Expect = 0.55
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 7/80 (8%)
Query: 220 AKSSIRLKLDVTECPHVNYLEHV-QARVTLSAHRRGDLQIVLVSPAGTRATLLATRPHDS 278
A +++ LDV LE + L G + +V+ A +T AT +
Sbjct: 94 APNNMDTVLDVATEVTFYGLEQYEEYPALLEDQFGGSQRAAVVAAAAGCSTAFATG---N 150
Query: 279 SKAGFNAW-PFMSVH--SWG 295
++ G + W M +H
Sbjct: 151 AQTGLSGWYLSMYLHKEQHS 170
>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus
aurantiacus [TaxId: 1108]}
Length = 142
Score = 25.4 bits (55), Expect = 5.8
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 34 QNYDPLASYDVNSHDDDPMPRYDQIFPDLYHLEH---KHVAKRSADPSHHHHTRLISEPV 90
NY A+ DV + DL + + ++A S + +++ P+
Sbjct: 62 NNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPL 121
Query: 91 VTTTY 95
TY
Sbjct: 122 DAMTY 126
>d1ta8a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA
ligase {Enterococcus faecalis [TaxId: 1351]}
Length = 313
Score = 25.7 bits (55), Expect = 8.3
Identities = 14/98 (14%), Positives = 23/98 (23%), Gaps = 3/98 (3%)
Query: 25 LEKDHPDLIQNYDP---LASYDVNSHDDDPMPRYDQIFPDLYHLEHKHVAKRSADPSHHH 81
+E + PDLI P + ++ + P D + E +
Sbjct: 48 IETEFPDLITPDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK 107
Query: 82 HTRLISEPVVTTTYSSGSSFEHQVVTTDLHHDCTSNHT 119
E + S V D T
Sbjct: 108 PVAYCCELKIDGLAISLRYENGVFVRGATRGDGTVGEN 145
>d1n1ca_ a.184.1.1 (A:) TorA specific chaperone TorD {Shewanella
massilia [TaxId: 76854]}
Length = 207
Score = 25.4 bits (55), Expect = 9.2
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 298 PFGSWYLEIHNEGRYFGELT 317
P+ S YL +E FGE
Sbjct: 89 PYASLYLSGEDEPLLFGEQH 108
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.131 0.412
Gapped
Lambda K H
0.267 0.0397 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,228,121
Number of extensions: 54880
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 38
Length of query: 319
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 234
Effective length of database: 1,240,546
Effective search space: 290287764
Effective search space used: 290287764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.1 bits)