BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15977
(152 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 238 bits (606), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 109/140 (77%), Positives = 125/140 (89%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
LNKNPVEGFSAGL+DD+D+Y+WEVLIIGPPDT+YEGG FKAHL FPK+YPLRPPKMKF+T
Sbjct: 29 LNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFIT 88
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
EIWHPN++KNGDVCISILHEPG+DKYGYE+ ERWLP+HTVETI+ISVISMLADPN +SP
Sbjct: 89 EIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSP 148
Query: 121 ANVDAAVSQYSSENYHWVRR 140
ANVDAA N + R+
Sbjct: 149 ANVDAAKEWREDRNGEFKRK 168
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 224 bits (570), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 105/141 (74%), Positives = 123/141 (87%), Gaps = 2/141 (1%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
+ + PV+GFSAGLVDD+DIYKWEVL+IGPPDT+YEGGFFKA L FP++YP +PPKMKF++
Sbjct: 15 MRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFIS 74
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
EIWHPNI+K G+VCISILH+PGDDK+GYER ERWLPVHTVETIL+SVISML DPN ESP
Sbjct: 75 EIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESP 134
Query: 121 ANVDAAVSQYSSENYHWVRRK 141
ANVDAA Q ENY ++K
Sbjct: 135 ANVDAAKMQ--RENYAEFKKK 153
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 162 bits (409), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 101/148 (68%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L NP EG AG +++ + ++WE LI+GP DT +E G F A L FP +YPL PPKM+F
Sbjct: 21 LTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTC 80
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
E++HPNI +G VCISILH PGDD GYE + ERW PV +VE IL+SV+SMLA+PNDES
Sbjct: 81 EMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESG 140
Query: 121 ANVDAAVSQYSSENYHWVRRKKIFIKSM 148
ANVDA+ + K+I KS+
Sbjct: 141 ANVDASKMWRDDREQFYKIAKQIVQKSL 168
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 162 bits (409), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 101/148 (68%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L NP EG AG +++ + ++WE LI+GP DT +E G F A L FP +YPL PPKM+F
Sbjct: 15 LTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTC 74
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
E++HPNI +G VCISILH PGDD GYE + ERW PV +VE IL+SV+SMLA+PNDES
Sbjct: 75 EMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESG 134
Query: 121 ANVDAAVSQYSSENYHWVRRKKIFIKSM 148
ANVDA+ + K+I KS+
Sbjct: 135 ANVDASKMWRDDREQFYKIAKQIVQKSL 162
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 162 bits (409), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 80/151 (52%), Positives = 99/151 (65%), Gaps = 7/151 (4%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L + PVEGF LVD+ D+Y WEV I GPP+T YEGG+FKA L FP +YP PP +F+T
Sbjct: 19 LQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLT 78
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
++WHPNI + GDVCISILH P DD E ERW P V TIL+SVIS+L +PN SP
Sbjct: 79 KMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSP 138
Query: 121 ANVDAAV-------SQYSSENYHWVRRKKIF 144
ANVDA+V S+ Y + RK++
Sbjct: 139 ANVDASVMYRKWKESKGKDREYTDIIRKQVL 169
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 162 bits (409), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 101/148 (68%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L NP EG AG +++ + ++WE LI+GP DT +E G F A L FP +YPL PPKM+F
Sbjct: 18 LTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTC 77
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
E++HPNI +G VCISILH PGDD GYE + ERW PV +VE IL+SV+SMLA+PNDES
Sbjct: 78 EMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESG 137
Query: 121 ANVDAAVSQYSSENYHWVRRKKIFIKSM 148
ANVDA+ + K+I KS+
Sbjct: 138 ANVDASKMWRDDREQFYKIAKQIVQKSL 165
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 162 bits (409), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 101/148 (68%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L NP EG AG +++ + ++WE LI+GP DT +E G F A L FP +YPL PPKM+F
Sbjct: 19 LTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTC 78
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
E++HPNI +G VCISILH PGDD GYE + ERW PV +VE IL+SV+SMLA+PNDES
Sbjct: 79 EMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESG 138
Query: 121 ANVDAAVSQYSSENYHWVRRKKIFIKSM 148
ANVDA+ + K+I KS+
Sbjct: 139 ANVDASKMWRDDREQFYKIAKQIVQKSL 166
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 161 bits (408), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 76/127 (59%), Positives = 91/127 (71%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L + PVEGF LVD+ D+Y WEV I GPP+T YEGG+FKA L FP +YP PP +F+T
Sbjct: 16 LQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLT 75
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
++WHPNI + GDVCISILH P DD E ERW P V TIL+SVIS+L +PN SP
Sbjct: 76 KMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSP 135
Query: 121 ANVDAAV 127
ANVDA+V
Sbjct: 136 ANVDASV 142
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 147 bits (372), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/127 (56%), Positives = 88/127 (69%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L K+ G AG +++I+ W+ LI GPPDT Y G F A L FPK+YPL PPK+ F
Sbjct: 16 LIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTP 75
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I HPNI NG+VCISILH PGDD YE A ERW PV +VE IL+SV+SML++PN ES
Sbjct: 76 SILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESG 135
Query: 121 ANVDAAV 127
AN+DA +
Sbjct: 136 ANIDACI 142
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 110 bits (275), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 80/142 (56%), Gaps = 15/142 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P SAG V D D++ W+ I+GPPD+ Y+GG F +HFP +YP +PPK+ F T
Sbjct: 31 LQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTT 89
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPNI NG +C+ IL +W P TV +L+S+ S+L DPN + P
Sbjct: 90 KIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSICSLLCDPNPDDP 136
Query: 121 ANVDAAVSQYSSENYHWVRRKK 142
D A Y S+ + R +
Sbjct: 137 LVPDIA-QIYKSDKEKYNRHAR 157
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 110 bits (274), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 80/142 (56%), Gaps = 15/142 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P SAG V D D++ W+ I+GPPD+ Y+GG F +HFP +YP +PPK+ F T
Sbjct: 15 LQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTT 73
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPNI NG +C+ IL +W P TV +L+S+ S+L DPN + P
Sbjct: 74 KIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSICSLLCDPNPDDP 120
Query: 121 ANVDAAVSQYSSENYHWVRRKK 142
D A Y S+ + R +
Sbjct: 121 LVPDIA-QIYKSDKEKYNRHAR 141
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 110 bits (274), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 80/142 (56%), Gaps = 15/142 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P SAG V D D++ W+ I+GPPD+ Y+GG F +HFP +YP +PPK+ F T
Sbjct: 19 LQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTT 77
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPNI NG +C+ IL +W P TV +L+S+ S+L DPN + P
Sbjct: 78 KIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSICSLLCDPNPDDP 124
Query: 121 ANVDAAVSQYSSENYHWVRRKK 142
D A Y S+ + R +
Sbjct: 125 LVPDIA-QIYKSDKEKYNRHAR 145
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 81/142 (57%), Gaps = 15/142 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P SAG V D D++ W+ I+GP D+ Y+GG F +HFP +YP +PPK+ F T
Sbjct: 18 LQRDPPAQCSAGPVGD-DLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT 76
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPNI NG +C+ IL +W P TV +L+S+ S+L DPN + P
Sbjct: 77 KIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSICSLLCDPNPDDP 123
Query: 121 ANVDAA-VSQYSSENYHWVRRK 141
D A + + E Y+ + R+
Sbjct: 124 LVPDIAHIYKSDKEKYNRLARE 145
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 15/142 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P SAG V D D++ W+ I+GPP++ Y+GG F +HFP +YP +PPK+ F T
Sbjct: 16 LGRDPPAQCSAGPVGD-DLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTT 74
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I+HPNI NG +C+ IL +W P T+ +L+S+ S+L DPN + P
Sbjct: 75 RIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDP 121
Query: 121 ANVD-AAVSQYSSENYHWVRRK 141
+ A + + E Y+ + R+
Sbjct: 122 LVPEIARIYKTDRERYNQLARE 143
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 107 bits (266), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 79/149 (53%), Gaps = 20/149 (13%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L K+P SAG V D D++ W+ I+GP D+ Y GG F +HFP +YP +PPK+ F T
Sbjct: 13 LGKDPPSSSSAGPVGD-DLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTT 71
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I+HPNI NG +C+ IL ++W P T+ +L+S+ S+L DPN + P
Sbjct: 72 RIYHPNINSNGSICLDILR-------------DQWSPALTISKVLLSISSLLTDPNPDDP 118
Query: 121 ANVDAA------VSQYSSENYHWVRRKKI 143
+ A S+Y W R+ I
Sbjct: 119 LVPEIAHVYKTDRSRYELSAREWTRKYAI 147
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 106 bits (265), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 80/142 (56%), Gaps = 15/142 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P SAG V D D++ W+ I+GP D+ Y+GG F +HFP +YP +PPK+ F T
Sbjct: 23 LARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT 81
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I+HPNI NG +C+ IL +W P T+ +L+S+ S+L DPN + P
Sbjct: 82 RIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDP 128
Query: 121 ANVD-AAVSQYSSENYHWVRRK 141
+ A + Q E Y+ + R+
Sbjct: 129 LVPEIARIYQTDREKYNRIARE 150
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 80/142 (56%), Gaps = 15/142 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P SAG V D D++ W+ I+GP D+ Y+GG F +HFP +YP +PPK+ F T
Sbjct: 18 LARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT 76
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I+HPNI NG +C+ IL +W P T+ +L+S+ S+L DPN + P
Sbjct: 77 RIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDP 123
Query: 121 ANVD-AAVSQYSSENYHWVRRK 141
+ A + + E Y+ + R+
Sbjct: 124 LVPEIARIYKTDREKYNRIARE 145
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 80/142 (56%), Gaps = 15/142 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P SAG V D D++ W+ I+GP D+ Y+GG F +HFP +YP +PPK+ F T
Sbjct: 31 LARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT 89
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I+HPNI NG +C+ IL +W P T+ +L+S+ S+L DPN + P
Sbjct: 90 RIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDP 136
Query: 121 ANVD-AAVSQYSSENYHWVRRK 141
+ A + + E Y+ + R+
Sbjct: 137 LVPEIARIYKTDREKYNRIARE 158
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 80/142 (56%), Gaps = 15/142 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P SAG V D D++ W+ I+GP D+ Y+GG F +HFP +YP +PPK+ F T
Sbjct: 13 LARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT 71
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I+HPNI NG +C+ IL +W P T+ +L+S+ S+L DPN + P
Sbjct: 72 RIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDP 118
Query: 121 ANVD-AAVSQYSSENYHWVRRK 141
+ A + + E Y+ + R+
Sbjct: 119 LVPEIARIYKTDREKYNRIARE 140
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 80/142 (56%), Gaps = 15/142 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P SAG V D D++ W+ I+GP D+ Y+GG F +HFP +YP +PPK+ F T
Sbjct: 15 LARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT 73
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I+HPNI NG +C+ IL +W P T+ +L+S+ S+L DPN + P
Sbjct: 74 RIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDP 120
Query: 121 ANVD-AAVSQYSSENYHWVRRK 141
+ A + + E Y+ + R+
Sbjct: 121 LVPEIARIYKTDREKYNRIARE 142
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 80/142 (56%), Gaps = 15/142 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P SAG V D D++ W+ I+GP D+ Y+GG F +HFP +YP +PPK+ F T
Sbjct: 15 LARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT 73
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I+HPNI NG +C+ IL +W P T+ +L+S+ S+L DPN + P
Sbjct: 74 RIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDP 120
Query: 121 ANVD-AAVSQYSSENYHWVRRK 141
+ A + + E Y+ + R+
Sbjct: 121 LVPEIARIYKTDREKYNRIARE 142
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 80/142 (56%), Gaps = 15/142 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P SAG V D D++ W+ I+GP D+ Y+GG F +HFP +YP +PPK+ F T
Sbjct: 15 LARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT 73
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I+HPNI NG +C+ IL +W P T+ +L+S+ S+L DPN + P
Sbjct: 74 RIYHPNINSNGSICLDILR-------------SQWGPALTISKVLLSICSLLCDPNPDDP 120
Query: 121 ANVD-AAVSQYSSENYHWVRRK 141
+ A + + E Y+ + R+
Sbjct: 121 LVPEIARIYKTDREKYNRIARE 142
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 80/142 (56%), Gaps = 15/142 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P SAG V D D++ W+ I+GP D+ Y+GG F +HFP +YP +PPK+ F T
Sbjct: 15 LARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT 73
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I+HPNI NG +C+ IL +W P T+ +L+S+ S+L DPN + P
Sbjct: 74 RIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDP 120
Query: 121 ANVD-AAVSQYSSENYHWVRRK 141
+ A + + + Y+ + R+
Sbjct: 121 LVPEIARIYKTDRDKYNRISRE 142
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 80/142 (56%), Gaps = 15/142 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P SAG V D D++ W+ I+GP D+ Y+GG F +HFP +YP +PPK+ F T
Sbjct: 23 LARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT 81
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I+HPNI NG +C+ IL +W P T+ +L+S+ S+L DPN + P
Sbjct: 82 RIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDP 128
Query: 121 ANVD-AAVSQYSSENYHWVRRK 141
+ A + + + Y+ + R+
Sbjct: 129 LVPEIARIYKTDRDKYNRISRE 150
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 80/142 (56%), Gaps = 15/142 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P SAG V D D++ W+ I+GP D+ Y+GG F +HFP +YP +PPK+ F T
Sbjct: 21 LARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT 79
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I+HPNI NG +C+ IL +W P T+ +L+S+ S+L DPN + P
Sbjct: 80 RIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDP 126
Query: 121 ANVD-AAVSQYSSENYHWVRRK 141
+ A + + + Y+ + R+
Sbjct: 127 LVPEIARIYKTDRDKYNRISRE 148
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 80/142 (56%), Gaps = 15/142 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P SAG V D D++ W+ I+GP D+ Y+GG F +HFP +YP +PPK+ F T
Sbjct: 12 LARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT 70
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I+HPNI NG +C+ IL +W P T+ +L+S+ S+L DPN + P
Sbjct: 71 RIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDP 117
Query: 121 ANVD-AAVSQYSSENYHWVRRK 141
+ A + + + Y+ + R+
Sbjct: 118 LVPEIARIYKTDRDKYNRISRE 139
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 82/146 (56%), Gaps = 15/146 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P G S G D++I W +I GP DT ++GG FK L F ++YP +PP ++FV+
Sbjct: 16 LQQDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVS 74
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
++HPNI +G +C+ IL +W P++ V IL S+ S+L DPN SP
Sbjct: 75 RMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSP 121
Query: 121 ANVDAAVSQYSSENYHWVRRKKIFIK 146
AN +AA YS + RR + ++
Sbjct: 122 ANSEAA-RMYSESKREYNRRVRDVVE 146
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 103 bits (257), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 79/135 (58%), Gaps = 15/135 (11%)
Query: 8 GFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNI 67
G SA + D ++ W +IIGP DT YE G F+ L F +EYP +PP +KF++E++HPN+
Sbjct: 23 GVSASPLPD-NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNV 81
Query: 68 EKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAV 127
NG++C+ IL RW P + V +IL S+ S+ DPN SPANV+AA
Sbjct: 82 YANGEICLDILQ-------------NRWTPTYDVASILTSIQSLFNDPNPASPANVEAA- 127
Query: 128 SQYSSENYHWVRRKK 142
+ + +V+R K
Sbjct: 128 TLFKDHKSQYVKRVK 142
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 103 bits (257), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 15/142 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P AG V D D++ W+ I+GPPD+ Y+GG F +HFP +YP +PPK+ F T
Sbjct: 19 LQRDPPAHCRAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTT 77
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPNI NG + + IL +W P TV +L+S+ S+L DPN + P
Sbjct: 78 KIYHPNINSNGSIKLDILR-------------SQWSPALTVSKVLLSICSLLCDPNPDDP 124
Query: 121 ANVDAAVSQYSSENYHWVRRKK 142
D A Y S+ + R +
Sbjct: 125 LVPDIA-QIYKSDKEKYNRHAR 145
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 103 bits (256), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 15/142 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P SAG V D D++ W+ I+GP D+ Y+GG F +HFP +YP +PPK+ F T
Sbjct: 15 LARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT 73
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I+HPNI NG +C+ L +W P T+ +L+S+ S+L DPN + P
Sbjct: 74 RIYHPNINSNGSICLDALR-------------SQWSPALTISKVLLSICSLLCDPNPDDP 120
Query: 121 ANVD-AAVSQYSSENYHWVRRK 141
+ A + + E Y+ + R+
Sbjct: 121 LVPEIARIYKTDREKYNRIARE 142
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 103 bits (256), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 15/142 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P SAG V D D++ W+ +GP D+ Y+GG F +HFP +YP +PPK+ F T
Sbjct: 15 LARDPPAQCSAGPVGD-DMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT 73
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I+HPNI NG +C+ IL +W P T+ +L+S+ S+L DPN + P
Sbjct: 74 RIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDP 120
Query: 121 ANVD-AAVSQYSSENYHWVRRK 141
+ A + + E Y+ + R+
Sbjct: 121 LVPEIARIYKTDREKYNRIARE 142
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 102 bits (255), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 72/120 (60%), Gaps = 14/120 (11%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L+K+P SAG V D D++ W+ I+GP D+ Y GG F ++HFP +YP +PPK+ F T
Sbjct: 33 LSKDPPTNCSAGPVGD-DMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTT 91
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPNI G +C+ IL ++W P T+ +L+S+ S+L DPN + P
Sbjct: 92 KIYHPNINSQGAICLDILK-------------DQWSPALTISKVLLSISSLLTDPNPDDP 138
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 102 bits (255), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 71/120 (59%), Gaps = 14/120 (11%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P SAG V D D+Y W+ I+GP D+ Y GG F +HFP +YP +PPK+ F T
Sbjct: 14 LERDPPTSCSAGPVGD-DLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTT 72
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPNI NG++C+ IL ++W P T+ +L+S+ S+L D N + P
Sbjct: 73 KIYHPNINANGNICLDILK-------------DQWSPALTLSKVLLSICSLLTDANPDDP 119
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 102 bits (254), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 14/152 (9%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P G S +D +I WE +I GP +T +E G FK L F +EYP +PP +KF++
Sbjct: 16 LQEDPPAGVSGAPTED-NILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFIS 74
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+++HPN+ +G +C+ IL RW P + V IL S+ S+L +PN SP
Sbjct: 75 KMFHPNVYADGSICLDILQ-------------NRWSPTYDVAAILTSIQSLLDEPNPNSP 121
Query: 121 ANVDAAVSQYSSENYHWVRRKKIFIKSMLSYG 152
AN AA + + R ++I +S L++G
Sbjct: 122 ANSLAAQLYQENRREYEKRVQQIVEQSWLNFG 153
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 102 bits (254), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 14/152 (9%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P G S +D +I WE +I GP +T +E G FK L F +EYP +PP +KF++
Sbjct: 19 LQEDPPAGVSGAPTED-NILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFIS 77
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+++HPN+ +G +C+ IL RW P + V IL S+ S+L +PN SP
Sbjct: 78 KMFHPNVYADGSICLDILQ-------------NRWSPTYDVAAILTSIQSLLDEPNPNSP 124
Query: 121 ANVDAAVSQYSSENYHWVRRKKIFIKSMLSYG 152
AN AA + + R ++I +S L++G
Sbjct: 125 ANSLAAQLYQENRREYEKRVQQIVEQSWLNFG 156
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 15/142 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P SAG V D D++ W+ I+GP D+ Y+GG F +HFP +YP +PPK+ F T
Sbjct: 15 LARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT 73
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I+HPNI NG + + IL +W P T+ +L+S+ S+L DPN + P
Sbjct: 74 RIYHPNINSNGSISLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDP 120
Query: 121 ANVD-AAVSQYSSENYHWVRRK 141
+ A + + E Y+ + R+
Sbjct: 121 LVPEIARIYKTDREKYNRIARE 142
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 15/142 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P SAG V D D++ W+ I+GP D+ Y+GG F +HFP +YP +PPK+ F T
Sbjct: 16 LARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT 74
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I+HPNI NG + + IL +W P T+ +L+S+ S+L DPN + P
Sbjct: 75 RIYHPNINSNGSISLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDP 121
Query: 121 ANVD-AAVSQYSSENYHWVRRK 141
+ A + + E Y+ + R+
Sbjct: 122 LVPEIARIYKTDREKYNRIARE 143
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 15/142 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P SAG V D D++ W+ I+GP D+ Y+GG F +HFP +YP +PPK+ F T
Sbjct: 31 LARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT 89
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I+HPNI NG + + IL +W P T+ +L+S+ S+L DPN + P
Sbjct: 90 RIYHPNINSNGSIXLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDP 136
Query: 121 ANVD-AAVSQYSSENYHWVRRK 141
+ A + + E Y+ + R+
Sbjct: 137 LVPEIARIYKTDREKYNRIARE 158
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 99.8 bits (247), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 79/142 (55%), Gaps = 15/142 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P SAG V D D++ W+ I+GP D+ Y+GG F +HFP +YP +PPK+ F T
Sbjct: 13 LARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT 71
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I+HPNI NG + + IL +W P T+ +L+S+ S+L DPN + P
Sbjct: 72 RIYHPNINSNGSISLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDP 118
Query: 121 ANVD-AAVSQYSSENYHWVRRK 141
+ A + + + Y+ + R+
Sbjct: 119 LVPEIARIYKTDRDKYNRISRE 140
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 99.4 bits (246), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 78/145 (53%), Gaps = 20/145 (13%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
+ ++P SAG V D DI+ W I GP D+ Y+GG F +HFP +YP + P++ F+T
Sbjct: 16 IQQDPPCNCSAGPVGD-DIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMT 74
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+++HPNI KNG +C+ IL ++W P T+ +L+S+ S+L DPN P
Sbjct: 75 KVYHPNINKNGVICLDILK-------------DQWSPALTLSRVLLSISSLLTDPNPSDP 121
Query: 121 -----ANV-DAAVSQYSSENYHWVR 139
ANV A Q+ W R
Sbjct: 122 LDPEVANVLRANKKQFEDTAREWTR 146
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 15/142 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P SAG V D D++ W+ I+GP D+ Y+GG F +HFP +YP +PPK+ F T
Sbjct: 12 LARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT 70
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I+HPNI NG + + IL +W P + +L+S+ S+L DPN + P
Sbjct: 71 RIYHPNINSNGSISLDILR-------------SQWSPALKISKVLLSICSLLCDPNPDDP 117
Query: 121 ANVD-AAVSQYSSENYHWVRRK 141
+ A + + E Y+ + R+
Sbjct: 118 LVPEIARIYKTDREKYNRIARE 139
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 66/112 (58%), Gaps = 13/112 (11%)
Query: 15 DDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVC 74
D +++KW + GP DT+YE +K L FP +YP +PP +KF T WHPN++++G++C
Sbjct: 34 DGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNIC 93
Query: 75 ISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAA 126
+ IL E W + V TIL+S+ S+L +PN+ SP N AA
Sbjct: 94 LDILK-------------ENWTASYDVRTILLSLQSLLGEPNNASPLNAQAA 132
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 96.3 bits (238), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 15/142 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P AG V D D++ W+ I+GP D+ Y+GG F +HFP +YP +PPK+ F T
Sbjct: 13 LARDPPAQCRAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT 71
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I+HP I NG + + IL +W P T+ +L+S+ S+L DPN + P
Sbjct: 72 RIYHPAINSNGSISLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDP 118
Query: 121 ANVD-AAVSQYSSENYHWVRRK 141
+ A + + E Y+ + R+
Sbjct: 119 LVPEIARIYKTDREKYNRIARE 140
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 15/122 (12%)
Query: 4 NPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIW 63
P + GL D+ W+V I G P T +EGG +K + FP+EYP RPPK +F ++
Sbjct: 33 KPCKSSDGGL----DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLF 88
Query: 64 HPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANV 123
HPN+ +G VC+SIL+E E W P T++ IL+ + +L DPN SPA
Sbjct: 89 HPNVYPSGTVCLSILNE-----------EEGWKPAITIKQILLGIQDLLDDPNIASPAQT 137
Query: 124 DA 125
+A
Sbjct: 138 EA 139
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 72/130 (55%), Gaps = 19/130 (14%)
Query: 8 GFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNI 67
G SA +V DI++W I GP T YEGG F + P +YP PPKMKFVT+IWHPNI
Sbjct: 64 GVSAQIVG-GDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNI 122
Query: 68 -EKNGDVCISIL-HEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDA 125
+ G +C+ IL HE W P T+ T L+S+ +MLADP P DA
Sbjct: 123 SSQTGAICLDILKHE--------------WSPALTIRTALLSIQAMLADPVPTDPQ--DA 166
Query: 126 AVSQYSSENY 135
V++ EN+
Sbjct: 167 EVAKMMIENH 176
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 92.8 bits (229), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 73/126 (57%), Gaps = 14/126 (11%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P G S G +++I +W +I GP T +E G FK + F +EYP +PP ++F++
Sbjct: 16 LQEDPPVGVS-GAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLS 74
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+++HPN+ +G +C+ IL RW P + V +IL S+ S+L +PN SP
Sbjct: 75 KMFHPNVYADGSICLDILQ-------------NRWSPTYDVSSILTSIQSLLDEPNPNSP 121
Query: 121 ANVDAA 126
AN AA
Sbjct: 122 ANSQAA 127
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 76/139 (54%), Gaps = 17/139 (12%)
Query: 14 VDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNI-EKNGD 72
+ DS+ ++W I GP T YEGG F + P +YP PPK+KFVT+IWHPNI + G
Sbjct: 47 IKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGA 106
Query: 73 VCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSS 132
+C+ +L W P T+ T L+S+ ++L+DP + P DA V++
Sbjct: 107 ICLDVLK-------------NEWSPALTIRTALLSIQALLSDPQPDDPQ--DAEVAKMYK 151
Query: 133 ENYH-WVRRKKIFIKSMLS 150
EN+ +V+ ++ K+ +
Sbjct: 152 ENHALFVKTASVWTKTFAT 170
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 90.1 bits (222), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 76/133 (57%), Gaps = 14/133 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L PV G A D+S+ + V+I GP D+ +EGG FK L P+EYP+ PK++F+T
Sbjct: 13 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 71
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPN++K G +C+ IL ++W P + T+L+S+ ++L+ PN + P
Sbjct: 72 KIYHPNVDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDP 118
Query: 121 ANVDAAVSQYSSE 133
D A ++E
Sbjct: 119 LANDVAEQWKTNE 131
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 90.1 bits (222), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 76/133 (57%), Gaps = 14/133 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L PV G A D+S+ + V+I GP D+ +EGG FK L P+EYP+ PK++F+T
Sbjct: 15 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 73
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPN++K G +C+ IL ++W P + T+L+S+ ++L+ PN + P
Sbjct: 74 KIYHPNVDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDP 120
Query: 121 ANVDAAVSQYSSE 133
D A ++E
Sbjct: 121 LANDVAEQWKTNE 133
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 90.1 bits (222), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 76/133 (57%), Gaps = 14/133 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L PV G A D+S+ + V+I GP D+ +EGG FK L P+EYP+ PK++F+T
Sbjct: 17 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 75
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPN++K G +C+ IL ++W P + T+L+S+ ++L+ PN + P
Sbjct: 76 KIYHPNVDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDP 122
Query: 121 ANVDAAVSQYSSE 133
D A ++E
Sbjct: 123 LANDVAEQWKTNE 135
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 90.1 bits (222), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 76/133 (57%), Gaps = 14/133 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L PV G A D+S+ + V+I GP D+ +EGG FK L P+EYP+ PK++F+T
Sbjct: 20 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 78
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPN++K G +C+ IL ++W P + T+L+S+ ++L+ PN + P
Sbjct: 79 KIYHPNVDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDP 125
Query: 121 ANVDAAVSQYSSE 133
D A ++E
Sbjct: 126 LANDVAEQWKTNE 138
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 90.1 bits (222), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 76/133 (57%), Gaps = 14/133 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L PV G A D+S+ + V+I GP D+ +EGG FK L P+EYP+ PK++F+T
Sbjct: 18 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 76
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPN++K G +C+ IL ++W P + T+L+S+ ++L+ PN + P
Sbjct: 77 KIYHPNVDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDP 123
Query: 121 ANVDAAVSQYSSE 133
D A ++E
Sbjct: 124 LANDVAEQWKTNE 136
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 71/144 (49%), Gaps = 22/144 (15%)
Query: 4 NPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIW 63
+P SAG D +IY+W I+GPP ++YEGG F + F EYP +PPK+ F T I+
Sbjct: 63 DPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIY 121
Query: 64 HPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANV 123
H NI G +C+ IL + W P T+ +L+S+ S+L D N P V
Sbjct: 122 HCNINSQGVICLDILK-------------DNWSPALTISKVLLSICSLLTDCNPADPL-V 167
Query: 124 DAAVSQYSSEN-------YHWVRR 140
+ +QY + W +R
Sbjct: 168 GSIATQYMTNRAEHDRMARQWTKR 191
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 80/147 (54%), Gaps = 14/147 (9%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
+ K ++ F VD++++ W+ LI+ P + Y+ G F+ ++FP EYP +PPK+ F T
Sbjct: 16 IRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKT 74
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPNI++ G VC+ ++ + E W P + ++ S+I+++ DP E P
Sbjct: 75 KIYHPNIDEKGQVCLPVI------------SAENWKPATKTDQVIQSLIALVNDPQPEHP 122
Query: 121 ANVDAAVSQYSSENYHWVRRKKIFIKS 147
D A +YS + + + + F K
Sbjct: 123 LRADLA-EEYSKDRKKFCKNAEEFTKK 148
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 80/147 (54%), Gaps = 14/147 (9%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
+ K ++ F VD++++ W+ LI+ P + Y+ G F+ ++FP EYP +PPK+ F T
Sbjct: 14 IRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKT 72
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPNI++ G VC+ ++ + E W P + ++ S+I+++ DP E P
Sbjct: 73 KIYHPNIDEKGQVCLPVI------------SAENWKPATKTDQVIQSLIALVNDPQPEHP 120
Query: 121 ANVDAAVSQYSSENYHWVRRKKIFIKS 147
D A +YS + + + + F K
Sbjct: 121 LRADLA-EEYSKDRKKFCKNAEEFTKK 146
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 86.3 bits (212), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 76/145 (52%), Gaps = 22/145 (15%)
Query: 4 NPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIW 63
+P + V +SDI+ + +GPP T YEGG F + P EYP +PPKM+F T+++
Sbjct: 17 DPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVY 76
Query: 64 HPNIEK-NGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPAN 122
HPNI G +C+ IL W PV T+++ LIS+ ++L P P
Sbjct: 77 HPNISSVTGAICLDILRNA-------------WSPVITLKSALISLQALLQSPEPNDPQ- 122
Query: 123 VDAAVSQYSSENYHWVRRKKIFIKS 147
DA V+Q H++R ++ F K+
Sbjct: 123 -DAEVAQ------HYLRDRESFNKT 140
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 86.3 bits (212), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 15/143 (10%)
Query: 4 NPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIW 63
+P SAG D +IY+W I+GPP ++YEGG F + F +YP +PPK+ F T I+
Sbjct: 18 DPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIY 76
Query: 64 HPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANV 123
H NI G +C+ IL + W P T+ +L+S+ S+L D N P V
Sbjct: 77 HCNINSQGVICLDILK-------------DNWSPALTISKVLLSICSLLTDCNPADPL-V 122
Query: 124 DAAVSQYSSENYHWVRRKKIFIK 146
+ +QY + R + + K
Sbjct: 123 GSIATQYMTNRAEHDRMARQWTK 145
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 77/148 (52%), Gaps = 22/148 (14%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
+ +P + V +SDI+ + +GPP T YEGG F + P EYP +PPKM+F T
Sbjct: 13 VKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDT 72
Query: 61 EIWHPNIEK-NGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDES 119
+++HPNI G +C+ IL W PV T+++ LIS+ ++L P
Sbjct: 73 KVYHPNISSVTGAICLDILK-------------NAWSPVITLKSALISLQALLQSPEPND 119
Query: 120 PANVDAAVSQYSSENYHWVRRKKIFIKS 147
P DA V+Q H++R ++ F K+
Sbjct: 120 PQ--DAEVAQ------HYLRDRESFNKT 139
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 70/126 (55%), Gaps = 14/126 (11%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L +PV G +A DD+ Y ++V I GP + YE G F+ L+ P +YP+ PK++F+T
Sbjct: 15 LVSDPVPGITAEPHDDNLRY-FQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT 73
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPNI++ G +C+ +L W P + T+L+S+ ++LA PN P
Sbjct: 74 KIYHPNIDRLGRICLDVLK-------------TNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 121 ANVDAA 126
D A
Sbjct: 121 LANDVA 126
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 70/126 (55%), Gaps = 14/126 (11%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L +PV G +A DD+ Y ++V I GP + YE G F+ L+ P +YP+ PK++F+T
Sbjct: 17 LVSDPVPGITAEPHDDNLRY-FQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT 75
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPNI++ G +C+ +L W P + T+L+S+ ++LA PN P
Sbjct: 76 KIYHPNIDRLGRICLDVLK-------------TNWSPALQIRTVLLSIQALLASPNPNDP 122
Query: 121 ANVDAA 126
D A
Sbjct: 123 LANDVA 128
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 70/113 (61%), Gaps = 15/113 (13%)
Query: 22 WEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEP 81
+ +LI GP T YEGG +K L P++YP+ PPK++F+T+I+HPNI+K G +C+ IL
Sbjct: 33 FNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILK-- 90
Query: 82 GDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSEN 134
++W P + T+L+S+ ++L+ P + P +D+ V+++ ++
Sbjct: 91 -----------DKWSPALQIRTVLLSIQALLSSPEPDDP--LDSKVAEHFKQD 130
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 70/113 (61%), Gaps = 15/113 (13%)
Query: 22 WEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEP 81
+ +LI GP T YEGG +K L P++YP+ PPK++F+T+I+HPNI+K G +C+ IL
Sbjct: 33 FNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILK-- 90
Query: 82 GDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSEN 134
++W P + T+L+S+ ++L+ P + P +D+ V+++ ++
Sbjct: 91 -----------DKWSPALQIRTVLLSIQALLSSPEPDDP--LDSKVAEHFKQD 130
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 59/108 (54%), Gaps = 11/108 (10%)
Query: 18 DIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISI 77
++ WE I G T +EGG FK + F +YP PPK KF ++HPN+ +G VC+SI
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 78 LHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDA 125
L E D W P T++ IL+ + +L +PN +SPA +A
Sbjct: 100 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQSPAQAEA 136
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 11/108 (10%)
Query: 18 DIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISI 77
++ WE I G T +EGG FK + F +YP PPK KF ++HPN+ +G VC+SI
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSI 99
Query: 78 LHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDA 125
L E D W P T++ IL+ + +L +PN + PA +A
Sbjct: 100 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEA 136
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 11/108 (10%)
Query: 18 DIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISI 77
++ WE I G T +EGG FK + F +YP PPK KF ++HPN+ +G VC+SI
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 78 LHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDA 125
L E D W P T++ IL+ + +L +PN ++PA +A
Sbjct: 100 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQAPAQAEA 136
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 14/126 (11%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L +PV G +A DD+ Y ++V I GP + YE G F+ L+ P +YP+ PK++F+T
Sbjct: 15 LVSDPVPGITAEPHDDNLRY-FQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT 73
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPNI++ G + + +L W P + T+L+S+ ++LA PN P
Sbjct: 74 KIYHPNIDRLGRISLDVLK-------------TNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 121 ANVDAA 126
D A
Sbjct: 121 LANDVA 126
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 11/108 (10%)
Query: 18 DIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISI 77
++ WE I G T +EGG FK + F +YP PPK KF ++HPN+ +G VC+SI
Sbjct: 39 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 98
Query: 78 LHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDA 125
L E D W P T++ IL+ + +L +PN + PA +A
Sbjct: 99 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEA 135
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 11/108 (10%)
Query: 18 DIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISI 77
++ WE I G T +EGG FK + F +YP PPK KF ++HPN+ +G VC+SI
Sbjct: 38 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 97
Query: 78 LHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDA 125
L E D W P T++ IL+ + +L +PN + PA +A
Sbjct: 98 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEA 134
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 11/108 (10%)
Query: 18 DIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISI 77
++ WE I G T +EGG FK + F +YP PPK KF ++HPN+ +G VC+SI
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 78 LHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDA 125
L E D W P T++ IL+ + +L +PN + PA +A
Sbjct: 100 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEA 136
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 11/108 (10%)
Query: 18 DIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISI 77
++ WE I G T +EGG FK + F +YP PPK KF ++HPN+ +G VC+SI
Sbjct: 42 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 101
Query: 78 LHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDA 125
L E D W P T++ IL+ + +L +PN + PA +A
Sbjct: 102 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEA 138
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 79.7 bits (195), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 11/108 (10%)
Query: 18 DIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISI 77
++ WE I G T +EGG FK + F +YP PPK KF ++HPN+ +G VC+SI
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 96
Query: 78 LHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDA 125
L E D W P T++ IL+ + +L +PN + PA +A
Sbjct: 97 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEA 133
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 79.7 bits (195), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 11/108 (10%)
Query: 18 DIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISI 77
++ WE I G T +EGG FK + F +YP PPK KF ++HPN+ +G VC+SI
Sbjct: 39 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 98
Query: 78 LHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDA 125
L E D W P T++ IL+ + +L +PN + PA +A
Sbjct: 99 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEA 135
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 14/120 (11%)
Query: 7 EGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPN 66
+G SA + +++KW I G T+YE +K L FP YP P +KF+T +HPN
Sbjct: 48 KGISA-FPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPN 106
Query: 67 IEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAA 126
++ G++ + IL E+W ++ V TIL+S+ S+L +PN +SP N AA
Sbjct: 107 VDTQGNISLDILK-------------EKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAA 153
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 63/122 (51%), Gaps = 15/122 (12%)
Query: 8 GFSAGLVDDSD----IYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIW 63
GF A V +D + KWE I G T + GG + + +P EYP +PPK+KF +
Sbjct: 23 GFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFY 82
Query: 64 HPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANV 123
HPN+ +G +C+SIL+E D W P T++ I++ V +L PN SPA
Sbjct: 83 HPNVYPSGTICLSILNEDQD-----------WRPAITLKQIVLGVQDLLDSPNPNSPAQE 131
Query: 124 DA 125
A
Sbjct: 132 PA 133
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 11/108 (10%)
Query: 18 DIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISI 77
D+ KWE I G T + GG + + +P EYP +PPK+KF +HPN+ +G +C+SI
Sbjct: 39 DLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSI 98
Query: 78 LHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDA 125
L+E D W P T++ I++ V +L PN SPA A
Sbjct: 99 LNEDQD-----------WRPAITLKQIVLGVQDLLDSPNPNSPAQEPA 135
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 11/108 (10%)
Query: 18 DIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISI 77
++ WE I G T +EGG FK + F +YP PPK KF ++HP + +G VC+SI
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSI 99
Query: 78 LHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDA 125
L E D W P T++ IL+ + +L +PN + PA +A
Sbjct: 100 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEA 136
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 14/126 (11%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L +PV G +A DD+ Y ++V I GP + YE G F+ L+ P +YP+ PK++F+T
Sbjct: 15 LVSDPVPGITAEPHDDNLRY-FQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT 73
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HP I++ G + + +L W P + T+L+S+ ++LA PN P
Sbjct: 74 KIYHPAIDRLGRISLDVLK-------------TNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 121 ANVDAA 126
D A
Sbjct: 121 LANDVA 126
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 75.9 bits (185), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 11/108 (10%)
Query: 18 DIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISI 77
++ WE I G T +EGG FK + F +YP PPK KF ++HPN+ +G V +SI
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSI 96
Query: 78 LHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDA 125
L E D W P T++ IL+ + +L +PN + PA +A
Sbjct: 97 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEA 133
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 11/108 (10%)
Query: 18 DIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISI 77
++ WE I G T +EGG FK + F +YP PPK KF ++HPN+ +G V +SI
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSI 96
Query: 78 LHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDA 125
L E D W P T++ IL+ + +L +PN + PA +A
Sbjct: 97 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEA 133
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 73/127 (57%), Gaps = 13/127 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L +N +G +A V + D+ +WEV I G +++++G F+ +HF EY PP +KF+T
Sbjct: 35 LKENNYKGITAKPVSE-DMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFIT 93
Query: 61 EIWHPNIE-KNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDES 119
+HPN++ G CI L P E+W +T+ +IL+++ ML++P E+
Sbjct: 94 IPFHPNVDPHTGQPCIDFLDNP-----------EKWNTNYTLSSILLALQVMLSNPVLEN 142
Query: 120 PANVDAA 126
P N++AA
Sbjct: 143 PVNLEAA 149
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 72.4 bits (176), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 17/147 (11%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L +P +G ++ D+ +V I GP T Y GG F+ L K++P PPK F+T
Sbjct: 25 LTADPPDGIKV-FPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLT 83
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPN+ NG++C+++L W + +L+++ +L PN ES
Sbjct: 84 KIFHPNVGANGEICVNVLK-------------RDWTAELGIRHVLLTIKCLLIHPNPESA 130
Query: 121 ANVDAAVSQYSSENY-HWVRRKKIFIK 146
N +A + ENY + R ++ +
Sbjct: 131 LNEEAG--RLLLENYEEYAARARLLTE 155
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 58/103 (56%), Gaps = 8/103 (7%)
Query: 25 LIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEPGDD 84
L + P + Y+GG F+ P Y + PPK+K +T+IWHPNI + G++C+S+L E D
Sbjct: 49 LTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSID 108
Query: 85 KYGYERAYERWLPVHTVETILISVISMLAD-PNDESPANVDAA 126
G W P T++ ++ + S+ D N + P N++AA
Sbjct: 109 GTG-------WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAA 144
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 58/103 (56%), Gaps = 8/103 (7%)
Query: 25 LIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEPGDD 84
L + P + Y+GG F+ P Y + PPK+K +T+IWHPNI + G++C+S+L E D
Sbjct: 49 LTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSID 108
Query: 85 KYGYERAYERWLPVHTVETILISVISMLAD-PNDESPANVDAA 126
G W P T++ ++ + S+ D N + P N++AA
Sbjct: 109 GTG-------WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAA 144
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 9/99 (9%)
Query: 26 IIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEPGDDK 85
I+G +T YE G FK + P+ YP PP+++F+T I+HPNI+ G +C+ +L P
Sbjct: 40 ILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGA 99
Query: 86 YGYERAYERWLPVHTVETILISVISMLADPNDESPANVD 124
W P + T+L S+ ++++PN + P D
Sbjct: 100 ---------WRPSLNIATVLTSIQLLMSEPNPDDPLMAD 129
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 16/125 (12%)
Query: 4 NPVEGFSAGL--VDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFV-T 60
NP G L +D++D+ KWE +I GP DT YE F+ + P YP+ PPK+ F+
Sbjct: 30 NPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQN 89
Query: 61 EIWHPNIEK-NGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDES 119
I H N++ G++C++IL E W PV + + +V +L +P +S
Sbjct: 90 NILHSNVKSATGEICLNILKP------------EEWTPVWDLLHCVHAVWRLLREPVSDS 137
Query: 120 PANVD 124
P +VD
Sbjct: 138 PLDVD 142
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 26 IIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEK-NGDVCISILHE 80
I GPPDT YEGG ++ + P+ YP PPK++F+T+IWHPNI G +C+ IL +
Sbjct: 96 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKD 151
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 26 IIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEK-NGDVCISILHE 80
I GPPDT YEGG ++ + P+ YP PPK++F+T+IWHPNI G +C+ IL +
Sbjct: 45 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKD 100
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 26 IIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEK-NGDVCISILHE 80
I GPPDT YEGG ++ + P+ YP PPK++F+T+IWHPNI G +C+ IL +
Sbjct: 60 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKD 115
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 26 IIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEK-NGDVCISILHE 80
I GPPDT YEGG ++ + P+ YP PPK++F+T+IWHPNI G +C+ IL +
Sbjct: 44 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKD 99
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 26 IIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEK-NGDVCISILHE 80
I GPPDT YEGG ++ + P+ YP PPK++F+T+IWHPNI G +C+ IL +
Sbjct: 47 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKD 102
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 16/125 (12%)
Query: 4 NPVEGFSAGL--VDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFV-T 60
NP G L +D++D+ KWE +I GP DT YE F+ + P YP+ PPK+ F+
Sbjct: 30 NPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQN 89
Query: 61 EIWHPNIEK-NGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDES 119
I H N++ G++C++IL E W PV + + +V +L +P +S
Sbjct: 90 NILHCNVKSATGEICLNILKP------------EEWTPVWDLLHCVHAVWRLLREPVCDS 137
Query: 120 PANVD 124
P +VD
Sbjct: 138 PLDVD 142
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 16/125 (12%)
Query: 4 NPVEGFSAGL--VDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFV-T 60
NP G L +D++D+ KWE +I GP DT YE F+ + P YP+ PPK+ F+
Sbjct: 30 NPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQN 89
Query: 61 EIWHPNIEK-NGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDES 119
I H N++ G++C++IL E W PV + + +V +L +P +S
Sbjct: 90 NILHCNVKSATGEICLNILKP------------EEWTPVWDLLHCVHAVWRLLREPVCDS 137
Query: 120 PANVD 124
P +VD
Sbjct: 138 PLDVD 142
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L K P DD+++ W L++ P Y F + FP EYP +PP +KF T
Sbjct: 16 LQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTT 74
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPN+++NG +C+ I+ + E W P +L ++ ++ PN P
Sbjct: 75 KIYHPNVDENGQICLPII------------SSENWKPCTKTCQVLEALNVLVNRPNIREP 122
Query: 121 ANVDAA 126
+D A
Sbjct: 123 LRMDLA 128
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L K P DD+++ W L++ P Y F + FP EYP +PP +KF T
Sbjct: 13 LQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTT 71
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPN+++NG +C+ I+ + E W P +L ++ ++ PN P
Sbjct: 72 KIYHPNVDENGQICLPII------------SSENWKPCTKTCQVLEALNVLVNRPNIREP 119
Query: 121 ANVDAA 126
+D A
Sbjct: 120 LRMDLA 125
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 14 VDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNI-EKNGD 72
+++ ++V+ GP T YEGG +K H+ P +YP P + F+ ++ HPN+ E +G
Sbjct: 23 LNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGS 82
Query: 73 VCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAA 126
VC+ ++++ Y +E +LP +L PN P N DAA
Sbjct: 83 VCLDVINQTWTPLYSLVNVFEVFLP------------QLLTYPNPSDPLNSDAA 124
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 14/112 (12%)
Query: 15 DDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVC 74
D D+ ++ L+I P + Y+ G F + YP PPK+K T ++HPNI+ G+VC
Sbjct: 30 DPDDLLNFK-LVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDLEGNVC 88
Query: 75 ISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAA 126
++IL E W PV T+ +I+ + + +PN E P N +AA
Sbjct: 89 LNILR-------------EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAA 127
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 14/113 (12%)
Query: 14 VDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDV 73
D S K EV I+ P + Y G +L F + YP+ PPK+ + +I+HPNI+ G+V
Sbjct: 58 ADRSQSPKLEV-IVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNV 116
Query: 74 CISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAA 126
C++IL E W P +++I+ ++ + +PN P N DAA
Sbjct: 117 CLNILR-------------EDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAA 156
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 13/105 (12%)
Query: 24 VLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNI-EKNGDVCISILHEPG 82
V GP T YEGG +K + P +YP + P + F+ +I+HPNI E +G VC+ ++++
Sbjct: 55 VKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTW 114
Query: 83 DDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAV 127
Y +E +LP +LA PN P N DAA
Sbjct: 115 TALYDLTNIFESFLP------------QLLAYPNPIDPLNGDAAA 147
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 14/112 (12%)
Query: 15 DDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVC 74
D D+ ++ L+I P + Y+ G F + YP PPK+K T ++HPNI+ G+V
Sbjct: 50 DPDDLLNFK-LVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVA 108
Query: 75 ISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAA 126
++IL E W PV T+ +I+ + + +PN E P N +AA
Sbjct: 109 LNILRED-------------WKPVLTINSIIYGLQYLFLEPNPEDPLNKEAA 147
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 15/101 (14%)
Query: 28 GPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNI-EKNGDVCISILHEPGDDKY 86
GP T YE G + H+ P +YP + P + F I HPN+ E++G VC+ +++
Sbjct: 46 GPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVIN------- 98
Query: 87 GYERAYERWLPVHTVETIL-ISVISMLADPNDESPANVDAA 126
+ W P++ +E I + + +L PN P NV AA
Sbjct: 99 ------QTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAA 133
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 15/100 (15%)
Query: 16 DSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIW--HPNIEKNGDV 73
+ I +W V + G P T+YEG F+ F YP P++ F E HP++ NG +
Sbjct: 50 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHI 109
Query: 74 CISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLA 113
C+SIL E W P +V+++ +S+ISML+
Sbjct: 110 CLSIL-------------TEDWSPALSVQSVCLSIISMLS 136
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 19/150 (12%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
+ K+PV A + S+I +W ++ GP T YEGG++ L FP+E+P +PP + +T
Sbjct: 26 IKKDPVPYICAEPLP-SNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMIT 84
Query: 61 EIWHPN--IEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLAD--PN 116
PN + N +C+SI D W P +V TIL ++S + + P
Sbjct: 85 ----PNGRFKCNTRLCLSITDFHPDT----------WNPAWSVSTILTGLLSFMVEKGPT 130
Query: 117 DESPANVDAAVSQYSSENYHWVRRKKIFIK 146
S D Q + ++ + + K+F +
Sbjct: 131 LGSIETSDFTKRQLAVQSLAFNLKDKVFCE 160
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 12/105 (11%)
Query: 14 VDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWH-----PNIE 68
D+ + +VLI GP DT Y G F+ ++FP++YP PP + T H PN+
Sbjct: 104 CDEERLDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLY 163
Query: 69 KNGDVCISILHEPGDDKYGYERAYERWLP-VHTVETILISVISML 112
+G VC+SIL+ + R E+W P + +L+SV S++
Sbjct: 164 NDGKVCLSILNT------WHGRPEEKWNPQTSSFLQVLVSVQSLI 202
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 58/106 (54%), Gaps = 14/106 (13%)
Query: 14 VDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTE-IWHPNIEKNGD 72
V S+I W V +G +T+Y +K + FP YPL+PP + F+ + H ++ NGD
Sbjct: 44 VHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGD 103
Query: 73 VCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDE 118
+C+S+L GDD + P ++ +++S+ISML+ ++
Sbjct: 104 ICLSVL---GDD----------YNPSLSISGLILSIISMLSSAKEK 136
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 53/120 (44%), Gaps = 14/120 (11%)
Query: 4 NPVEGFSAGL--VDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTE 61
N EG S GL DD + W I G P T++E + + YP PP +KF T+
Sbjct: 37 NVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTK 96
Query: 62 IWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVIS-MLADPNDESP 120
I ++ G V + LH + W +T+ETILIS+ ML+ N P
Sbjct: 97 IEMSCVDNCGRVIKNNLH-----------ILKNWNRNYTIETILISLRQEMLSSANKRLP 145
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 53/120 (44%), Gaps = 14/120 (11%)
Query: 4 NPVEGFSAGL--VDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTE 61
N EG S GL DD + W I G P T++E + + YP PP +KF T+
Sbjct: 41 NVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTK 100
Query: 62 IWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVIS-MLADPNDESP 120
I ++ G V + LH + W +T+ETILIS+ ML+ N P
Sbjct: 101 IEMSCVDNCGRVIKNNLH-----------ILKNWNRNYTIETILISLRQEMLSSANKRLP 149
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 59/106 (55%), Gaps = 14/106 (13%)
Query: 14 VDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTE-IWHPNIEKNGD 72
V ++I W V +G +T+Y +K + FP +YPL+PP + F+ + H ++ NGD
Sbjct: 30 VHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGD 89
Query: 73 VCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDE 118
+C+S+L GDD + P ++ +++S+ISML+ ++
Sbjct: 90 ICLSLL---GDD----------YNPSLSISGLVLSIISMLSSAKEK 122
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 13/114 (11%)
Query: 7 EGFSAGLVDDSDIY--KWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWH 64
E S GL D DI KW I+GPP + +E + + YP PPK+ F+++I
Sbjct: 24 ESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINL 83
Query: 65 PNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDE 118
P + + H D ++RAY T+ET+L+ + +A P ++
Sbjct: 84 PCVNPTTGEVQTDFHTLRD----WKRAY-------TMETLLLDLRKEMATPANK 126
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 13/114 (11%)
Query: 7 EGFSAGLVDDSDIY--KWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWH 64
E S GL D DI KW I+GPP + +E + + YP PPK+ F+++I
Sbjct: 25 ESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINL 84
Query: 65 PNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDE 118
P + + H D ++RAY T+ET+L+ + +A P ++
Sbjct: 85 PCVNPTTGEVQTDFHTLRD----WKRAY-------TMETLLLDLRKEMATPANK 127
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 14 VDDSDIYKWEVLIIGPPDTMY--EGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNG 71
VD IY W + + P D++Y G ++ + F +YP PP ++FVT ++ P + G
Sbjct: 44 VDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEG 103
Query: 72 DVCISILHE 80
+C ++++
Sbjct: 104 GICDRMVND 112
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 9 FSAGLVDDSD--IYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEI 62
S GL DD D + +W +IIGPP T YE + + +YP PP ++FVT+I
Sbjct: 31 VSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI 86
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 9 FSAGLVDDSD--IYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEI 62
S GL DD D + +W +IIGPP T YE + + +YP PP ++FVT+I
Sbjct: 25 VSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI 80
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 9 FSAGLVDDSD--IYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEI 62
S GL DD D + +W +IIGPP T YE + + +YP PP ++FVT+I
Sbjct: 36 VSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI 91
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 9 FSAGLVDDSD--IYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEI 62
S GL DD D + +W +IIGPP T YE + + +YP PP ++FVT+I
Sbjct: 26 VSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI 81
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 10 SAGLVDDSD--IYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEI 62
S GL DD D + +W +IIGPP T+YE + + +YP PP ++FVT+I
Sbjct: 57 SWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI 111
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 10 SAGLVDDSD--IYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEI 62
S GL DD D + +W +IIGPP T+YE + + +YP PP ++FVT+I
Sbjct: 47 SWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI 101
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 10 SAGLVDDSD--IYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEI 62
S GL DD D + +W +I+GPP T+YE + + +YP PP ++FVT+I
Sbjct: 29 SWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI 83
>pdb|3RQ1|A Chain A, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
pdb|3RQ1|B Chain B, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
pdb|3RQ1|C Chain C, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
pdb|3RQ1|D Chain D, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
Length = 418
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 15 DDSDIYKWEVLIIGPPDTMYEGGFF 39
D +DI+K E +G P Y GGFF
Sbjct: 336 DRADIFKQEAAQVGLPXLPYRGGFF 360
>pdb|2PA6|A Chain A, Crystal Structure Of Mj0232 From Methanococcus Jannaschii
pdb|2PA6|B Chain B, Crystal Structure Of Mj0232 From Methanococcus Jannaschii
Length = 427
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 117 DESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSY 151
DE +DAA S++ + Y++V KK+ + +L Y
Sbjct: 241 DEVVFALDAAASEFYKDGYYYVEGKKLTREELLDY 275
>pdb|3H5L|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino Acid
Abc Transporter From Silicibacter Pomeroyi
pdb|3H5L|B Chain B, Crystal Structure Of A Putative Branched-Chain Amino Acid
Abc Transporter From Silicibacter Pomeroyi
Length = 419
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 13/93 (13%)
Query: 16 DSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCI 75
D D Y W PP+T+Y GGF K P K + I P I V I
Sbjct: 126 DPDRY-WGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNK-IAIITGPGIYS---VNI 180
Query: 76 SILHEPGDDKYGYERAYERWLPVHTVETILISV 108
+ G +YGY+ V ET+ I V
Sbjct: 181 ANAIRDGAGEYGYD--------VSLFETVAIPV 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,471,832
Number of Sequences: 62578
Number of extensions: 237829
Number of successful extensions: 624
Number of sequences better than 100.0: 126
Number of HSP's better than 100.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 405
Number of HSP's gapped (non-prelim): 130
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)