Query psy15977
Match_columns 152
No_of_seqs 140 out of 1104
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 17:50:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417|consensus 100.0 1.2E-51 2.6E-56 298.6 13.1 136 1-152 13-148 (148)
2 COG5078 Ubiquitin-protein liga 100.0 3.2E-50 6.9E-55 296.3 14.8 136 1-151 17-152 (153)
3 KOG0425|consensus 100.0 5.4E-49 1.2E-53 285.7 14.8 147 1-149 17-163 (171)
4 KOG0419|consensus 100.0 1E-46 2.3E-51 266.8 12.2 132 1-148 16-147 (152)
5 PTZ00390 ubiquitin-conjugating 100.0 5.6E-46 1.2E-50 275.2 15.7 136 1-152 14-149 (152)
6 PLN00172 ubiquitin conjugating 100.0 1.3E-45 2.9E-50 271.9 15.4 134 1-150 13-146 (147)
7 KOG0426|consensus 100.0 4.4E-44 9.6E-49 253.7 13.3 146 1-148 16-161 (165)
8 KOG0424|consensus 100.0 4.5E-42 9.7E-47 246.4 13.5 137 2-151 17-157 (158)
9 PF00179 UQ_con: Ubiquitin-con 100.0 9.6E-42 2.1E-46 248.8 10.5 131 2-146 10-140 (140)
10 KOG0418|consensus 100.0 3.4E-41 7.3E-46 251.5 13.0 131 6-152 23-154 (200)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 6.2E-40 1.3E-44 239.6 14.0 131 1-146 11-141 (141)
12 smart00212 UBCc Ubiquitin-conj 100.0 2.9E-39 6.2E-44 237.1 15.5 136 1-150 10-145 (145)
13 KOG0421|consensus 100.0 2.3E-39 4.9E-44 232.6 9.0 130 2-148 42-171 (175)
14 KOG0422|consensus 100.0 2.4E-35 5.2E-40 210.7 11.3 133 4-151 17-149 (153)
15 KOG0416|consensus 100.0 1.3E-34 2.7E-39 213.2 10.5 129 7-151 18-148 (189)
16 KOG0420|consensus 100.0 3E-34 6.6E-39 211.5 10.5 131 5-151 42-175 (184)
17 KOG0423|consensus 100.0 9.5E-34 2.1E-38 209.3 6.6 132 1-148 22-153 (223)
18 KOG0894|consensus 99.9 3E-27 6.4E-32 180.1 11.5 113 1-128 17-133 (244)
19 KOG0427|consensus 99.9 1.1E-26 2.3E-31 164.9 10.1 99 1-114 27-126 (161)
20 KOG0429|consensus 99.9 1.1E-22 2.4E-27 155.7 12.2 130 3-149 33-168 (258)
21 KOG0428|consensus 99.9 2.1E-21 4.5E-26 150.9 8.4 97 3-114 24-122 (314)
22 KOG0895|consensus 99.7 7.5E-18 1.6E-22 151.6 7.2 110 2-118 864-977 (1101)
23 KOG0895|consensus 99.6 8.1E-15 1.8E-19 132.3 10.0 107 1-114 294-404 (1101)
24 KOG0896|consensus 99.3 6.7E-12 1.5E-16 89.8 8.0 93 10-113 27-122 (138)
25 KOG0897|consensus 98.8 1.7E-08 3.7E-13 70.5 6.0 90 39-145 13-109 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.5 4.3E-07 9.2E-12 65.7 6.8 67 35-114 34-106 (133)
27 PF05743 UEV: UEV domain; Int 98.3 1.6E-06 3.6E-11 61.9 5.5 78 19-114 32-117 (121)
28 KOG2391|consensus 97.7 0.00014 3E-09 59.8 6.9 76 27-116 56-139 (365)
29 PF14462 Prok-E2_E: Prokaryoti 97.3 0.0039 8.5E-08 44.6 9.1 102 8-113 13-120 (122)
30 PF14457 Prok-E2_A: Prokaryoti 96.0 0.012 2.7E-07 44.0 4.4 63 40-114 56-126 (162)
31 smart00591 RWD domain in RING 95.1 0.52 1.1E-05 31.7 9.7 26 35-60 39-64 (107)
32 PF05773 RWD: RWD domain; Int 94.4 0.12 2.6E-06 35.1 5.1 44 18-61 28-73 (113)
33 PF08694 UFC1: Ubiquitin-fold 91.8 0.22 4.7E-06 36.6 3.4 53 27-79 55-118 (161)
34 PF06113 BRE: Brain and reprod 74.5 8.2 0.00018 32.2 5.4 34 33-66 61-95 (333)
35 PF14460 Prok-E2_D: Prokaryoti 73.4 7.4 0.00016 29.2 4.5 21 59-79 89-112 (175)
36 KOG3357|consensus 69.7 7.9 0.00017 28.1 3.7 59 21-79 52-121 (167)
37 TIGR03737 PRTRC_B PRTRC system 64.1 13 0.00028 29.4 4.3 38 60-114 131-172 (228)
38 KOG4018|consensus 56.9 22 0.00048 27.8 4.3 39 18-57 29-69 (215)
39 KOG0309|consensus 51.7 54 0.0012 30.7 6.5 42 20-61 449-491 (1081)
40 PF06113 BRE: Brain and reprod 51.5 19 0.00042 30.1 3.4 24 37-60 306-329 (333)
41 PF09765 WD-3: WD-repeat regio 49.5 22 0.00047 29.1 3.4 65 16-113 122-187 (291)
42 cd00421 intradiol_dioxygenase 46.9 28 0.00061 25.2 3.4 25 36-60 65-90 (146)
43 cd03457 intradiol_dioxygenase_ 42.5 35 0.00077 26.0 3.5 26 35-60 85-110 (188)
44 PF14455 Metal_CEHH: Predicted 41.6 1.5E+02 0.0032 22.2 8.1 89 21-114 38-174 (177)
45 PF03847 TFIID_20kDa: Transcri 38.9 93 0.002 19.7 4.5 43 107-151 4-46 (68)
46 cd03459 3,4-PCD Protocatechuat 34.6 57 0.0012 24.1 3.5 25 36-60 72-101 (158)
47 KOG0662|consensus 30.1 50 0.0011 25.9 2.5 55 51-118 167-225 (292)
48 cd05845 Ig2_L1-CAM_like Second 27.0 1.4E+02 0.0031 20.0 4.1 26 34-61 16-41 (95)
49 PF03366 YEATS: YEATS family; 26.7 1.9E+02 0.0041 19.0 4.9 40 20-61 2-41 (84)
50 KOG1047|consensus 25.9 65 0.0014 29.0 2.8 29 32-61 248-279 (613)
51 PF08804 gp32: gp32 DNA bindin 25.4 40 0.00088 23.0 1.2 34 118-151 60-93 (94)
52 cd07981 TAF12 TATA Binding Pro 25.3 1.8E+02 0.004 18.3 4.6 43 107-151 6-48 (72)
53 TIGR02423 protocat_alph protoc 23.4 1.1E+02 0.0023 23.5 3.3 25 36-60 96-125 (193)
54 PF13950 Epimerase_Csub: UDP-g 23.3 60 0.0013 20.0 1.6 19 94-112 37-55 (62)
55 PF00845 Gemini_BL1: Geminivir 22.5 2.1E+02 0.0045 23.1 4.8 47 18-65 101-156 (276)
56 PF11333 DUF3135: Protein of u 22.3 1.6E+02 0.0035 19.4 3.6 24 123-148 7-30 (83)
57 PF14798 Ca_hom_mod: Calcium h 22.2 89 0.0019 25.0 2.7 20 132-151 219-238 (251)
58 smart00107 BTK Bruton's tyrosi 21.3 41 0.0009 18.7 0.5 16 62-77 7-23 (36)
59 COG4957 Predicted transcriptio 21.2 47 0.001 24.3 0.9 18 39-56 104-121 (148)
60 cd03463 3,4-PCD_alpha Protocat 20.8 1.3E+02 0.0029 22.8 3.4 23 37-59 93-120 (185)
No 1
>KOG0417|consensus
Probab=100.00 E-value=1.2e-51 Score=298.57 Aligned_cols=136 Identities=38% Similarity=0.802 Sum_probs=131.8
Q ss_pred CCCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCC
Q psy15977 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHE 80 (152)
Q Consensus 1 l~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~ 80 (152)
|+++|++||++.+ +++|+++|+++|.||.|||||||+|++.|.||++||++||+|+|.|+||||||+++|+||+++|+
T Consensus 13 l~~dp~~~~~~~~-~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G~IclDILk- 90 (148)
T KOG0417|consen 13 LLRDPPPGCSAGP-VGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNGRICLDILK- 90 (148)
T ss_pred HhcCCCCCCccCC-CCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCccccchHHhhh-
Confidence 4688999999998 66799999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhccC
Q psy15977 81 PGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSYG 152 (152)
Q Consensus 81 ~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~~ 152 (152)
++|+|+.||++||++|+++|.+||+++|++.++|++ |+.|+++|+++||+|+.++|.|
T Consensus 91 ------------~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~--~k~d~~~~~~~ARewt~kyA~~ 148 (148)
T KOG0417|consen 91 ------------DQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAEL--YKTDRAKYERTAREWTRKYAMG 148 (148)
T ss_pred ------------ccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHH--HHhhHHHHHHHHHHHHHHHhcC
Confidence 679999999999999999999999999999999999 9999999999999999999875
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-50 Score=296.28 Aligned_cols=136 Identities=47% Similarity=0.881 Sum_probs=131.8
Q ss_pred CCCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCC
Q psy15977 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHE 80 (152)
Q Consensus 1 l~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~ 80 (152)
|+++++++|++.|++++|+++|+++|.||++||||||+|++.|.||++||++||+|+|.++||||||+.+|+|||++|+
T Consensus 17 l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~~G~vCLdIL~- 95 (153)
T COG5078 17 LQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDPSGNVCLDILK- 95 (153)
T ss_pred HhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCCCCCChhHHHh-
Confidence 4678899999999877799999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhcc
Q psy15977 81 PGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSY 151 (152)
Q Consensus 81 ~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~ 151 (152)
+.|+|+++|++||++|+++|.+||.++|+|.|||++ |++|+++|+++|++++++++.
T Consensus 96 ------------~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~--~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 96 ------------DRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATL--YREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred ------------CCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHH--HHhCHHHHHHHHHHHHHHhcc
Confidence 889999999999999999999999999999999999 999999999999999999874
No 3
>KOG0425|consensus
Probab=100.00 E-value=5.4e-49 Score=285.68 Aligned_cols=147 Identities=64% Similarity=1.125 Sum_probs=144.0
Q ss_pred CCCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCC
Q psy15977 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHE 80 (152)
Q Consensus 1 l~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~ 80 (152)
|+++|.+|+++..++++|+++|.+.|+||++|.|+||.|+..+.||.+||.+||+++|.|++|||||+++|+||+++|..
T Consensus 17 L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~~G~vCISILH~ 96 (171)
T KOG0425|consen 17 LQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYEDGDVCISILHP 96 (171)
T ss_pred HhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCCCCCEEEEeecC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHh
Q psy15977 81 PGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSML 149 (152)
Q Consensus 81 ~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~ 149 (152)
++.++++++...+.|+|.+|+++||++|.+||.+||.++|+|.+||+. |++|+++|.+++++++++-
T Consensus 97 pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~--~Ren~~EykkkV~r~vr~s 163 (171)
T KOG0425|consen 97 PGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKE--WRENPEEYKKKVRRCVRRS 163 (171)
T ss_pred CCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHH--HhhCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 9999999999999998864
No 4
>KOG0419|consensus
Probab=100.00 E-value=1e-46 Score=266.79 Aligned_cols=132 Identities=42% Similarity=0.788 Sum_probs=127.1
Q ss_pred CCCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCC
Q psy15977 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHE 80 (152)
Q Consensus 1 l~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~ 80 (152)
||++|+.|+++.|+++ |++.|.+.|+||.+|||+||+|++.|+|+++||.+||.|+|.+++|||||+.+|.+||++|+
T Consensus 16 lqedpp~gisa~P~~~-niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~G~iClDiLq- 93 (152)
T KOG0419|consen 16 LQEDPPAGISAAPVEN-NIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQ- 93 (152)
T ss_pred hhcCCCCCccCCCCcc-ceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCCCcchHHHHh-
Confidence 6889999999999555 99999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHH
Q psy15977 81 PGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSM 148 (152)
Q Consensus 81 ~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~ 148 (152)
..|+|.|++..||.+||+||.+|++.+|+|.+||++ |.+|+.+|++++++.+.+
T Consensus 94 ------------NrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~L--f~e~~rey~rrVk~~veq 147 (152)
T KOG0419|consen 94 ------------NRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARL--FSENKREYERRVKETVEQ 147 (152)
T ss_pred ------------cCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHH--HhhChHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999 999999999999988654
No 5
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=5.6e-46 Score=275.21 Aligned_cols=136 Identities=32% Similarity=0.679 Sum_probs=130.0
Q ss_pred CCCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCC
Q psy15977 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHE 80 (152)
Q Consensus 1 l~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~ 80 (152)
|++++++|+.+.+ .++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+++|.||+++|.
T Consensus 14 l~~~~~~~i~~~~-~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~G~iCl~iL~- 91 (152)
T PTZ00390 14 LANDPPPGIKAEP-DPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILK- 91 (152)
T ss_pred HHhCCCCCeEEEE-CCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCCCeEECccCc-
Confidence 3567899999999 55699999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhccC
Q psy15977 81 PGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSYG 152 (152)
Q Consensus 81 ~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~~ 152 (152)
++|+|++||++||++|++||.+|++++|+|.+||++ |++|+++|+++|+++++++|.|
T Consensus 92 ------------~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~--~~~d~~~f~~~a~~~~~~~a~~ 149 (152)
T PTZ00390 92 ------------DKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADH--FKNNRADAEKVAREWNQKYAKH 149 (152)
T ss_pred ------------ccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHH--HHHCHHHHHHHHHHHHHHHhcc
Confidence 789999999999999999999999999999999999 9999999999999999999854
No 6
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.3e-45 Score=271.91 Aligned_cols=134 Identities=38% Similarity=0.755 Sum_probs=128.9
Q ss_pred CCCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCC
Q psy15977 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHE 80 (152)
Q Consensus 1 l~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~ 80 (152)
|++++++|+.+.+ .++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+|+||||+.+|.||+++|.
T Consensus 13 l~~~~~~~~~~~~-~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G~iCl~il~- 90 (147)
T PLN00172 13 LLKDPPSNCSAGP-SDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNGSICLDILR- 90 (147)
T ss_pred HHhCCCCCeEEEE-CCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCCEEEcccCc-
Confidence 4578899999999 56699999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhc
Q psy15977 81 PGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLS 150 (152)
Q Consensus 81 ~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~ 150 (152)
++|+|++||++||++|++||.+|++++|+|.+||++ |.+|+++|+++|+++++++|
T Consensus 91 ------------~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~--~~~~~~~f~~~a~~~~~~~a 146 (147)
T PLN00172 91 ------------DQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARV--FKENRSRYEATAREWTQRYA 146 (147)
T ss_pred ------------CCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHH--HHHCHHHHHHHHHHHHHHhh
Confidence 789999999999999999999999999999999999 99999999999999999886
No 7
>KOG0426|consensus
Probab=100.00 E-value=4.4e-44 Score=253.74 Aligned_cols=146 Identities=53% Similarity=0.920 Sum_probs=142.7
Q ss_pred CCCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCC
Q psy15977 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHE 80 (152)
Q Consensus 1 l~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~ 80 (152)
|..++|+|+.+.|.+++|++.|.|.|.||++|+|+||.|..+|.||.|||.+||+++|...+|||||+.+|+||+++|..
T Consensus 16 Lt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy~dG~VCISILHa 95 (165)
T KOG0426|consen 16 LTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHA 95 (165)
T ss_pred HccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcccCCCeEEEEEeeC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHH
Q psy15977 81 PGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSM 148 (152)
Q Consensus 81 ~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~ 148 (152)
++++...++...+.|+|..+++.||+++.+||.+||.++.+|.+|+++ +++|+++|++.|+..+.+
T Consensus 96 PGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~m--WRe~R~ef~~i~~~lvrK 161 (165)
T KOG0426|consen 96 PGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKM--WREDREEFEKIAKRLVRK 161 (165)
T ss_pred CCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHH--HHHhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 999999999999988765
No 8
>KOG0424|consensus
Probab=100.00 E-value=4.5e-42 Score=246.36 Aligned_cols=137 Identities=33% Similarity=0.608 Sum_probs=129.6
Q ss_pred CCCCCCCeEEEecCCC----CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEecc
Q psy15977 2 NKNPVEGFSAGLVDDS----DIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISI 77 (152)
Q Consensus 2 ~~~p~~g~~~~p~~~~----n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~ 77 (152)
.++.+.||++.|+.+. |++.|+|.|.|++||+||||.|.+++.||++||++||+++|.+++|||||++.|.|||++
T Consensus 17 rk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HPNVypsgtVcLsi 96 (158)
T KOG0424|consen 17 RKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPNVYPSGTVCLSI 96 (158)
T ss_pred hhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCCCcCCCCcEehhh
Confidence 4678899999998553 699999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhcc
Q psy15977 78 LHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSY 151 (152)
Q Consensus 78 l~~~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~ 151 (152)
|++. .+|+|+.||.+||++||.||.+||..+|+|.||... |..|+.+|+++|+.+++++|.
T Consensus 97 L~e~-----------~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~--~~~~r~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 97 LNEE-----------KDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTI--YCQDRAEYEKRVRAQAKEYAK 157 (158)
T ss_pred hccc-----------cCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHH--HhhCHHHHHHHHHHHHHHhcc
Confidence 9852 459999999999999999999999999999999999 999999999999999999874
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=9.6e-42 Score=248.82 Aligned_cols=131 Identities=43% Similarity=0.846 Sum_probs=119.2
Q ss_pred CCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCCC
Q psy15977 2 NKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEP 81 (152)
Q Consensus 2 ~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~ 81 (152)
+++++.|+.+.+.+++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+|+||||+.+|.||+++|..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~icl~~l~~- 88 (140)
T PF00179_consen 10 QKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGRICLDILNP- 88 (140)
T ss_dssp HHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSBBGHGGGTT-
T ss_pred hhCCCCCEEEEECCCCChheEEEEEeccCccceecccccccccccccccccccccccccccccccccccccchhhhhhc-
Confidence 5678999999996656999999999999999999999999999999999999999999999999999999999999973
Q ss_pred CCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHH
Q psy15977 82 GDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIK 146 (152)
Q Consensus 82 ~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~ 146 (152)
+.|+|+++|.+||.+|+++|.+|+.++++|.+||++ |++|+++|+++|++|.
T Consensus 89 -----------~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~--~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 89 -----------ESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAEL--YKNDREEFEKKAREWA 140 (140)
T ss_dssp -----------TTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHH--HHHCHHHHHHHHHHH-
T ss_pred -----------ccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHH--HHHCHHHHHHHHHHcC
Confidence 569999999999999999999999999999999999 9999999999999973
No 10
>KOG0418|consensus
Probab=100.00 E-value=3.4e-41 Score=251.46 Aligned_cols=131 Identities=33% Similarity=0.733 Sum_probs=126.2
Q ss_pred CCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCC-CCcEEeccCCCCCCC
Q psy15977 6 VEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEK-NGDVCISILHEPGDD 84 (152)
Q Consensus 6 ~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~-~G~icl~~l~~~~~~ 84 (152)
..|+.+..+++ |+.+.++.|.||+|||||||.|.++|.+|++|||+||+|+|.|+||||||++ +|.|||++|+
T Consensus 23 q~~I~ve~vn~-~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVSs~tGaICLDilk----- 96 (200)
T KOG0418|consen 23 QAGIIVEMVNE-NLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNVSSQTGAICLDILK----- 96 (200)
T ss_pred hcceEEEEccC-ChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCCCcccccchhhhhh-----
Confidence 56899999765 9999999999999999999999999999999999999999999999999987 8999999998
Q ss_pred CcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhccC
Q psy15977 85 KYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSYG 152 (152)
Q Consensus 85 ~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~~ 152 (152)
+.|++++||+++|++||++|..|.+.+|.+..+|++ |.+|++.|.+.|+.|+..+|-|
T Consensus 97 --------d~Wa~slTlrtvLislQalL~~pEp~dPqDavva~q--y~~n~~~F~~TAr~WT~~fA~~ 154 (200)
T KOG0418|consen 97 --------DQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQ--YVDNYEMFYKTARYWTTEFAGG 154 (200)
T ss_pred --------cccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHH--HhhhHHHHHHHHHHHHHHHhCC
Confidence 899999999999999999999999999999999999 9999999999999999999865
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=6.2e-40 Score=239.63 Aligned_cols=131 Identities=43% Similarity=0.834 Sum_probs=123.6
Q ss_pred CCCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCC
Q psy15977 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHE 80 (152)
Q Consensus 1 l~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~ 80 (152)
|++++++|+++.+ +++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.++++||||+.+|.||+++|..
T Consensus 11 l~~~~~~~~~v~~-~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~icl~~l~~ 89 (141)
T cd00195 11 LKKDPPSGISAEP-VEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGKICLSILKT 89 (141)
T ss_pred HHhCCCCCeEEEE-CCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCCCchhhcCC
Confidence 4577889999999 555999999999999999999999999999999999999999999999999999999999999972
Q ss_pred CCCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHH
Q psy15977 81 PGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIK 146 (152)
Q Consensus 81 ~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~ 146 (152)
+.|+|++++++||.+|+++|.+|+.++++|.+||++ |++|+++|+++|++++
T Consensus 90 ------------~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~--~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 90 ------------HGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKL--YKENREEFKKKAREWT 141 (141)
T ss_pred ------------CCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHH--HHHCHHHHHHHHHHhC
Confidence 349999999999999999999999999999999999 9999999999999863
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=2.9e-39 Score=237.10 Aligned_cols=136 Identities=43% Similarity=0.853 Sum_probs=128.2
Q ss_pred CCCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCC
Q psy15977 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHE 80 (152)
Q Consensus 1 l~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~ 80 (152)
|++++++|+.+.+.+++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.++++||||+++|.||++.|..
T Consensus 10 ~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G~icl~~l~~ 89 (145)
T smart00212 10 LLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSGEICLDILKQ 89 (145)
T ss_pred HHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCCCEehhhcCC
Confidence 35678889999996656999999999999999999999999999999999999999999999999999999999999963
Q ss_pred CCCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhc
Q psy15977 81 PGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLS 150 (152)
Q Consensus 81 ~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~ 150 (152)
++|+|++++++||.+|+++|.+|+.++++|.+||++ |++|+++|+++|++++++.+
T Consensus 90 ------------~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~--~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 90 ------------EKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATL--YKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred ------------CCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHH--HHHCHHHHHHHHHHHHHHhC
Confidence 579999999999999999999999999999999999 99999999999999998863
No 13
>KOG0421|consensus
Probab=100.00 E-value=2.3e-39 Score=232.61 Aligned_cols=130 Identities=37% Similarity=0.683 Sum_probs=122.3
Q ss_pred CCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCCC
Q psy15977 2 NKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEP 81 (152)
Q Consensus 2 ~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~ 81 (152)
+....+||++.| +++|++.|.++|.||++|+|+|-.|++.+.||.+||+.||+|+|+|+.|||||+-.|.|||++|+
T Consensus 42 mms~~~gISAFP-~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~GnIcLDILk-- 118 (175)
T KOG0421|consen 42 MMSNTPGISAFP-ESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSGNICLDILK-- 118 (175)
T ss_pred HhcCCCCcccCc-CcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccccchHHHHH--
Confidence 344568999999 55599999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHH
Q psy15977 82 GDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSM 148 (152)
Q Consensus 82 ~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~ 148 (152)
+.|+..|.+++||++||+||.+||.++|+|..||++ +. |.++|++.+.+.-++
T Consensus 119 -----------dKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAel--W~-d~~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 119 -----------DKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAEL--WS-DQEEYKKYLEALYKE 171 (175)
T ss_pred -----------HHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHH--hc-CHHHHHHHHHHHhhc
Confidence 889999999999999999999999999999999999 88 999999998876543
No 14
>KOG0422|consensus
Probab=100.00 E-value=2.4e-35 Score=210.67 Aligned_cols=133 Identities=33% Similarity=0.674 Sum_probs=123.4
Q ss_pred CCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCCCCC
Q psy15977 4 NPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEPGD 83 (152)
Q Consensus 4 ~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~~~ 83 (152)
++...+.-.-++++|++.|++.|. |.+-||..|.|++.|.||.+|||+||+|.|.|+||||||++.|.||+.++..
T Consensus 17 ~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe~gqvClPiis~--- 92 (153)
T KOG0422|consen 17 NKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDEKGQVCLPIISA--- 92 (153)
T ss_pred ccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCCCCceeeeeeec---
Confidence 333344434457889999999999 8999999999999999999999999999999999999999999999999975
Q ss_pred CCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhcc
Q psy15977 84 DKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSY 151 (152)
Q Consensus 84 ~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~ 151 (152)
++|.|++++.+||+++.+++.+|+++.|++.|+|.. |..|+.+|.++|.+++++++.
T Consensus 93 ---------EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~e--y~~d~~kF~K~Aee~tkK~~e 149 (153)
T KOG0422|consen 93 ---------ENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEE--YIKDPKKFVKNAEEFTKKYSE 149 (153)
T ss_pred ---------ccccCcccHHHHHHHHHHHhcCCCccccchhhHHHH--HHHCHHHHHHhHHHHHHHhcC
Confidence 999999999999999999999999999999999999 999999999999999999875
No 15
>KOG0416|consensus
Probab=100.00 E-value=1.3e-34 Score=213.20 Aligned_cols=129 Identities=26% Similarity=0.555 Sum_probs=120.1
Q ss_pred CCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCC-CCcEEeccCCCCCCCC
Q psy15977 7 EGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEK-NGDVCISILHEPGDDK 85 (152)
Q Consensus 7 ~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~-~G~icl~~l~~~~~~~ 85 (152)
.+..|.. .++++.+++|.+.||++|||+||++++++.+|++||++.|.|.|.++||||||+. .|.|||+.++
T Consensus 18 s~yeV~~-ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLDViN------ 90 (189)
T KOG0416|consen 18 SDYEVTI-INDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSVCLDVIN------ 90 (189)
T ss_pred cCCeEEE-ecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCccHHHHHh------
Confidence 3556666 4558999999999999999999999999999999999999999999999999997 8999999998
Q ss_pred cccccccCCCCCcCCHHHHHHH-HHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhcc
Q psy15977 86 YGYERAYERWLPVHTVETILIS-VISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSY 151 (152)
Q Consensus 86 ~~~~~~~~~W~p~~ti~~iL~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~ 151 (152)
+.|+|.+.+..|+.. |-.||..||+.+|+|.|||.+ |..++++|++++++++++||.
T Consensus 91 -------QtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal--~l~~~~~Y~~~v~eY~~kYA~ 148 (189)
T KOG0416|consen 91 -------QTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAAL--YLRDPEEYEEKVKEYIKKYAT 148 (189)
T ss_pred -------hhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHH--HhcCHHHHHHHHHHHHHHhcC
Confidence 789999999999977 458999999999999999999 999999999999999999984
No 16
>KOG0420|consensus
Probab=100.00 E-value=3e-34 Score=211.47 Aligned_cols=131 Identities=31% Similarity=0.573 Sum_probs=117.6
Q ss_pred CCCCeEEEecC-CCCce--eEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCCC
Q psy15977 5 PVEGFSAGLVD-DSDIY--KWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEP 81 (152)
Q Consensus 5 p~~g~~~~p~~-~~n~~--~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~ 81 (152)
-|++++....+ .++++ +++++|. |.++.|+||.|.|.+.+|+.||+.||+|+|+|+||||||+.+|.|||++|+
T Consensus 42 Lp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLnILR-- 118 (184)
T KOG0420|consen 42 LPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLNILR-- 118 (184)
T ss_pred CCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHHHHH--
Confidence 35566533322 23444 5999998 999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhcc
Q psy15977 82 GDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSY 151 (152)
Q Consensus 82 ~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~ 151 (152)
++|+|+.++.+|+.+++++|.+|++++|+|.|||++ +++|++.|+.+|+...+..+-
T Consensus 119 -----------edW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~--l~~n~e~F~~~Vr~~m~gg~v 175 (184)
T KOG0420|consen 119 -----------EDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAV--LKSNREGFENNVRRAMSGGCV 175 (184)
T ss_pred -----------hcCccccchHHHHHHHHHHhccCCCcccccHHHHHH--HHhCHHHHHHHHHHHHhcCcc
Confidence 789999999999999999999999999999999999 999999999999998877653
No 17
>KOG0423|consensus
Probab=100.00 E-value=9.5e-34 Score=209.27 Aligned_cols=132 Identities=31% Similarity=0.641 Sum_probs=126.2
Q ss_pred CCCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCC
Q psy15977 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHE 80 (152)
Q Consensus 1 l~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~ 80 (152)
|...||.||.|.+ +++|+...++.|.||.||||++|+|++.+.+..|||.+||+-.|+|+||||||-.||.||.+.|.
T Consensus 22 l~~~PPdGIKV~~-NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNGEICVNtLK- 99 (223)
T KOG0423|consen 22 LDESPPDGIKVVV-NEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANGEICVNTLK- 99 (223)
T ss_pred cccCCCCceEEec-ChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCceehhhhhh-
Confidence 4568999999998 78899999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHH
Q psy15977 81 PGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSM 148 (152)
Q Consensus 81 ~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~ 148 (152)
.+|+|+..|+.||+.|.++|..|++++.+|.+|.++ ..+++++|.++|+-.+..
T Consensus 100 ------------kDW~p~LGirHvLltikCLLI~PnPESALNEeAGkm--LLEnYdeYa~rARl~TeI 153 (223)
T KOG0423|consen 100 ------------KDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKM--LLENYDEYARRARLYTEI 153 (223)
T ss_pred ------------cccCcccchhhHhhhhheeeecCChHHHHhHHHHHH--HHHhHHHHHHHHHHHHHh
Confidence 789999999999999999999999999999999999 999999999999977643
No 18
>KOG0894|consensus
Probab=99.95 E-value=3e-27 Score=180.10 Aligned_cols=113 Identities=35% Similarity=0.697 Sum_probs=100.4
Q ss_pred CCCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCc--cCCCCcEEeccC
Q psy15977 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPN--IEKNGDVCISIL 78 (152)
Q Consensus 1 l~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPn--i~~~G~icl~~l 78 (152)
|+++|+++|.+.| .++|+.+||.+|.||+||||+||.|+.+|.||++||++||.|+++| || +-.+.++||++.
T Consensus 17 l~k~Pv~~i~A~P-~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiT----PNGRFktntRLCLSiS 91 (244)
T KOG0894|consen 17 LCKDPVPYIVARP-NPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMIT----PNGRFKTNTRLCLSIS 91 (244)
T ss_pred HHhCCchhhccCC-CccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEEC----CCCceecCceEEEecc
Confidence 5789999999999 7779999999999999999999999999999999999999999999 66 445889999998
Q ss_pred CCCCCCCcccccccCCCCCcCCHHHHHHHHHHhhCC--CCCCCcccHHHHHh
Q psy15977 79 HEPGDDKYGYERAYERWLPVHTVETILISVISMLAD--PNDESPANVDAAVS 128 (152)
Q Consensus 79 ~~~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~--p~~~~p~n~~aa~~ 128 (152)
+. |++.|+|+++|.+||.++.|+|.+ |...+....+.-+.
T Consensus 92 Df----------HPdsWNP~WsVStILtGLlSFM~e~~pTtGSI~tS~~~kr 133 (244)
T KOG0894|consen 92 DF----------HPDSWNPGWSVSTILTGLLSFMTEDSPTTGSIETSDQDKR 133 (244)
T ss_pred cc----------CcCcCCCcccHHHHHHHHHHHHhcCCCccCcccccHHHHH
Confidence 74 789999999999999999999986 77776655554443
No 19
>KOG0427|consensus
Probab=99.94 E-value=1.1e-26 Score=164.94 Aligned_cols=99 Identities=32% Similarity=0.801 Sum_probs=93.8
Q ss_pred CCCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEeccc-ccCccCCCCcEEeccCC
Q psy15977 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEI-WHPNIEKNGDVCISILH 79 (152)
Q Consensus 1 l~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i-~HPni~~~G~icl~~l~ 79 (152)
+|.+||.|+.... .+ |+.+|.+.+.|.+||.|+|..|.+.++||+.||+..|+|.|..++ .||+|++||.|||++|.
T Consensus 27 ~q~~pP~G~~~~v-~d-nlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYSNGHICL~iL~ 104 (161)
T KOG0427|consen 27 WQNNPPTGFKHRV-TD-NLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYSNGHICLDILY 104 (161)
T ss_pred HhcCCCCcceeec-cc-chheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceecCCeEEEEeec
Confidence 5789999999885 44 999999999999999999999999999999999999999999986 69999999999999998
Q ss_pred CCCCCCcccccccCCCCCcCCHHHHHHHHHHhhCC
Q psy15977 80 EPGDDKYGYERAYERWLPVHTVETILISVISMLAD 114 (152)
Q Consensus 80 ~~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~ 114 (152)
++|+|++++.+|.++|.+||.+
T Consensus 105 -------------d~WsPAmsv~SvClSIlSMLSS 126 (161)
T KOG0427|consen 105 -------------DSWSPAMSVQSVCLSILSMLSS 126 (161)
T ss_pred -------------ccCCcchhhHHHHHHHHHHHcc
Confidence 8899999999999999999986
No 20
>KOG0429|consensus
Probab=99.89 E-value=1.1e-22 Score=155.66 Aligned_cols=130 Identities=18% Similarity=0.329 Sum_probs=117.8
Q ss_pred CCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCC--CCCceeEecccccCccCC-CCcEEeccCC
Q psy15977 3 KNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPL--RPPKMKFVTEIWHPNIEK-NGDVCISILH 79 (152)
Q Consensus 3 ~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~--~pP~v~f~t~i~HPni~~-~G~icl~~l~ 79 (152)
+.+.+||+|.| +-.|-+.|.++|++ ..+.|.||+|+|+|.+|++||. ..|+|.|.+.++||+|.+ ++.+|++-..
T Consensus 33 ~ekL~gIyviP-Syan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~skeLdl~raf 110 (258)
T KOG0429|consen 33 REKLDGIYVIP-SYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKELDLNRAF 110 (258)
T ss_pred hccCCceEEcc-cccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccceeHhhhh
Confidence 57889999999 77799999999995 5678999999999999999994 899999999999999998 7899998776
Q ss_pred CCCCCCcccccccCCCCC-cCCHHHHHHHHHHhhCCCCCCCc--ccHHHHHhhhhHhhHHHHHHHHHHHHHHh
Q psy15977 80 EPGDDKYGYERAYERWLP-VHTVETILISVISMLADPNDESP--ANVDAAVSQYSSENYHWVRRKKIFIKSML 149 (152)
Q Consensus 80 ~~~~~~~~~~~~~~~W~p-~~ti~~iL~~i~~ll~~p~~~~p--~n~~aa~~~~~~~~~~~f~~~~~~~~~~~ 149 (152)
..|+- ..+|++||..||..|.+|+.+.+ .|+|||.+ |++++++|.++|++++...
T Consensus 111 -------------~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l--~~k~r~ef~~rvqe~vk~s 168 (258)
T KOG0429|consen 111 -------------PEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVL--YKKHRDEFRERVQECVKAS 168 (258)
T ss_pred -------------hhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHH--HHHhHHHHHHHHHHHHHHH
Confidence 45988 67799999999999999998866 49999999 9999999999999998754
No 21
>KOG0428|consensus
Probab=99.85 E-value=2.1e-21 Score=150.87 Aligned_cols=97 Identities=33% Similarity=0.802 Sum_probs=87.0
Q ss_pred CCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCc--cCCCCcEEeccCCC
Q psy15977 3 KNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPN--IEKNGDVCISILHE 80 (152)
Q Consensus 3 ~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPn--i~~~G~icl~~l~~ 80 (152)
++|...+.+.| -|+|+++||++|.||.||-|+||+||.+|.||.+||++||.+..+| || +.-+.+|||++.+.
T Consensus 24 ~~Ptd~yha~p-lEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLT----pNGRFE~nkKiCLSISgy 98 (314)
T KOG0428|consen 24 KDPTDHYHAQP-LEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLT----PNGRFEVNKKICLSISGY 98 (314)
T ss_pred cCchhhhhhcc-chhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEc----CCCceeeCceEEEEecCC
Confidence 57888888899 4559999999999999999999999999999999999999999999 66 33477899999863
Q ss_pred CCCCCcccccccCCCCCcCCHHHHHHHHHHhhCC
Q psy15977 81 PGDDKYGYERAYERWLPVHTVETILISVISMLAD 114 (152)
Q Consensus 81 ~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~ 114 (152)
+++.|.|+++|++.|+.|..+|-.
T Consensus 99 ----------HPEtWqPSWSiRTALlAlIgFmPt 122 (314)
T KOG0428|consen 99 ----------HPETWQPSWSIRTALLALIGFMPT 122 (314)
T ss_pred ----------CccccCcchhHHHHHHHHHccccC
Confidence 779999999999999999999863
No 22
>KOG0895|consensus
Probab=99.72 E-value=7.5e-18 Score=151.59 Aligned_cols=110 Identities=25% Similarity=0.523 Sum_probs=96.7
Q ss_pred CCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecc--cccCccCCCCcEEeccCC
Q psy15977 2 NKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTE--IWHPNIEKNGDVCISILH 79 (152)
Q Consensus 2 ~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~--i~HPni~~~G~icl~~l~ 79 (152)
..+-|.||.|.- .|+.+....+.|.||.||||.+|.|.|++.||++||.+||.|...+. .++||.|.+|+||+++|+
T Consensus 864 ~~~~~~~~~vr~-~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~l~ 942 (1101)
T KOG0895|consen 864 PLSLPSGIFVRA-YEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSLLN 942 (1101)
T ss_pred hccCCCceEEEe-chHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccccceehhhhc
Confidence 456688999998 78788899999999999999999999999999999999999999987 689999999999999999
Q ss_pred CCCCCCcccccccCCCCCcCCHHHHHHHHHHhhCC--CCCC
Q psy15977 80 EPGDDKYGYERAYERWLPVHTVETILISVISMLAD--PNDE 118 (152)
Q Consensus 80 ~~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~--p~~~ 118 (152)
.|. |...+-|+|+-++.+||.+||.|... |-.+
T Consensus 943 tw~------g~~~e~w~~~s~~lq~l~s~q~l~l~~~py~n 977 (1101)
T KOG0895|consen 943 TWH------GRGNEVWNPSSSILQVLVSIQGLVLNEEPYFN 977 (1101)
T ss_pred ccc------CCCccccCcchhHHHHHHHhhhhhcccccccC
Confidence 543 23458899999999999999999753 5443
No 23
>KOG0895|consensus
Probab=99.58 E-value=8.1e-15 Score=132.27 Aligned_cols=107 Identities=32% Similarity=0.618 Sum_probs=96.2
Q ss_pred CCCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecc---cccCccCCCCcEEecc
Q psy15977 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTE---IWHPNIEKNGDVCISI 77 (152)
Q Consensus 1 l~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~---i~HPni~~~G~icl~~ 77 (152)
|.++.++|+.+.+ ++.++...++.|.||.||||++|+|.|+|.||..||..||.+.+++. .+.||.|.+|+||+++
T Consensus 294 lskdlpEgifvrp-~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn~GKVcLsl 372 (1101)
T KOG0895|consen 294 LSKDLPEGIFVRP-DEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYNDGKVCLSL 372 (1101)
T ss_pred hcccCCCCccccc-cccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcccCceEEeee
Confidence 3567899999999 77799999999999999999999999999999999999999999998 5899999999999999
Q ss_pred CCCCCCCCcccccccCCCCCc-CCHHHHHHHHHHhhCC
Q psy15977 78 LHEPGDDKYGYERAYERWLPV-HTVETILISVISMLAD 114 (152)
Q Consensus 78 l~~~~~~~~~~~~~~~~W~p~-~ti~~iL~~i~~ll~~ 114 (152)
|..+... ..+.|+|. .+|.++|.+||.++.+
T Consensus 373 LgTwtg~------~~e~wtp~~~sl~qvL~sIQ~Li~~ 404 (1101)
T KOG0895|consen 373 LGTWTGS------RREKWTPNGSSLLQVLESIQGLILN 404 (1101)
T ss_pred eeecccc------cccCCCccccchhhhhhhhhhhhcc
Confidence 9864332 33789997 8899999999999875
No 24
>KOG0896|consensus
Probab=99.33 E-value=6.7e-12 Score=89.77 Aligned_cols=93 Identities=31% Similarity=0.550 Sum_probs=75.6
Q ss_pred EEEecCCCCc--eeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCC-CCcEEeccCCCCCCCCc
Q psy15977 10 SAGLVDDSDI--YKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEK-NGDVCISILHEPGDDKY 86 (152)
Q Consensus 10 ~~~p~~~~n~--~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~-~G~icl~~l~~~~~~~~ 86 (152)
+....+++|+ ..|..+|.||+.|+||+.+|.++|.+.++||..||.|+|.++|--+.|++ +|.|.-..+.
T Consensus 27 s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g~Vd~~~i~------- 99 (138)
T KOG0896|consen 27 SWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNGVVDPRDIT------- 99 (138)
T ss_pred eccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCCccCccccc-------
Confidence 3333344454 58999999999999999999999999999999999999999998888876 6666543222
Q ss_pred ccccccCCCCCcCCHHHHHHHHHHhhC
Q psy15977 87 GYERAYERWLPVHTVETILISVISMLA 113 (152)
Q Consensus 87 ~~~~~~~~W~p~~ti~~iL~~i~~ll~ 113 (152)
-..+|+-++++..+|.++..++.
T Consensus 100 ----~L~~W~~~y~~~~vl~~lr~~m~ 122 (138)
T KOG0896|consen 100 ----VLARWQRSYSIKMVLGQLRKEMM 122 (138)
T ss_pred ----hhhcccccchhhHHHHhhhHHHH
Confidence 11789999999999999997654
No 25
>KOG0897|consensus
Probab=98.78 E-value=1.7e-08 Score=70.47 Aligned_cols=90 Identities=19% Similarity=0.346 Sum_probs=67.1
Q ss_pred EEEEEEcCCCCCCCCCceeEecccccCccC-----CCCcEEeccCCCCCCCCcccccccCCCCCcCCHHHHHHHHHHhhC
Q psy15977 39 FKAHLHFPKEYPLRPPKMKFVTEIWHPNIE-----KNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLA 113 (152)
Q Consensus 39 f~~~i~~p~~yP~~pP~v~f~t~i~HPni~-----~~G~icl~~l~~~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~ 113 (152)
.-+.+.|+++||+.||.++... |.++ .+|.||+.+|.. ++|+.+++|+.++++|..++.
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~----p~~~~Gyvl~ggAIcmellt~------------qgwssay~Ve~vi~qiaatlV 76 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVK----PLEDEGYVLEGGAICMELLTK------------QGWSSAYEVERVIMQIAATLV 76 (122)
T ss_pred eEeeeecccCCCCCCCcceeee----ecccCCEEecchhhHHHHHcc------------ccccchhhHHHHHHHHHHHhh
Confidence 4567889999999999998776 5555 479999999985 899999999999999999998
Q ss_pred CCC--CCCcccHHHHHhhhhHhhHHHHHHHHHHH
Q psy15977 114 DPN--DESPANVDAAVSQYSSENYHWVRRKKIFI 145 (152)
Q Consensus 114 ~p~--~~~p~n~~aa~~~~~~~~~~~f~~~~~~~ 145 (152)
.-. ...+++.+.. ++......+.|+..++-+
T Consensus 77 kG~~ri~~~a~k~sk-~~s~~qa~~sfksLv~~h 109 (122)
T KOG0897|consen 77 KGGARIEFPAEKSSK-LYSHSQAQQSFKSLVQIH 109 (122)
T ss_pred ccceeEecCcchhhh-HhhHHHHHHHHHHHHHHH
Confidence 633 3455555444 522233344677666654
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.50 E-value=4.3e-07 Score=65.75 Aligned_cols=67 Identities=28% Similarity=0.672 Sum_probs=59.0
Q ss_pred CCcEEEEEEEcCCCCCCCCCceeEeccc---ccCccCCCCcEEe---ccCCCCCCCCcccccccCCCCCcCCHHHHHHHH
Q psy15977 35 EGGFFKAHLHFPKEYPLRPPKMKFVTEI---WHPNIEKNGDVCI---SILHEPGDDKYGYERAYERWLPVHTVETILISV 108 (152)
Q Consensus 35 ~gg~f~~~i~~p~~yP~~pP~v~f~t~i---~HPni~~~G~icl---~~l~~~~~~~~~~~~~~~~W~p~~ti~~iL~~i 108 (152)
.|+.+.+.|.+|++||..||.|...... +=|||+.+|.+|+ ...- +.|.|.-++.++|..+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~-------------D~~~P~~~~~~~l~~a 100 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVL-------------DPWDPEGIIADCLERA 100 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCccc-------------CccCHHHHHHHHHHHH
Confidence 6899999999999999999999888654 6899999999999 3332 7899999999999999
Q ss_pred HHhhCC
Q psy15977 109 ISMLAD 114 (152)
Q Consensus 109 ~~ll~~ 114 (152)
+.+|.+
T Consensus 101 ~~lL~~ 106 (133)
T PF14461_consen 101 IRLLED 106 (133)
T ss_pred HHHHHH
Confidence 999984
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.29 E-value=1.6e-06 Score=61.87 Aligned_cols=78 Identities=18% Similarity=0.423 Sum_probs=55.6
Q ss_pred ceeEEEEEeCCCCCCCCCcEE--EEEEEcCCCCCCCCCceeEecccc-----cCccCCCCcEEeccCCCCCCCCcccccc
Q psy15977 19 IYKWEVLIIGPPDTMYEGGFF--KAHLHFPKEYPLRPPKMKFVTEIW-----HPNIEKNGDVCISILHEPGDDKYGYERA 91 (152)
Q Consensus 19 ~~~w~~~i~Gp~~tpy~gg~f--~~~i~~p~~yP~~pP~v~f~t~i~-----HPni~~~G~icl~~l~~~~~~~~~~~~~ 91 (152)
+....++|. -.|+|..| .+.|.+|.+||.+||.+....... +.+|+++|+|.+..|
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL------------- 94 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL------------- 94 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-------------
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-------------
Confidence 444555553 35777777 578889999999999998876632 449999999999999
Q ss_pred cCCCCC-cCCHHHHHHHHHHhhCC
Q psy15977 92 YERWLP-VHTVETILISVISMLAD 114 (152)
Q Consensus 92 ~~~W~p-~~ti~~iL~~i~~ll~~ 114 (152)
++|++ +.++.+++..++..|.+
T Consensus 95 -~~W~~~~s~L~~lv~~l~~~F~~ 117 (121)
T PF05743_consen 95 -QNWNPPSSNLVDLVQELQAVFSE 117 (121)
T ss_dssp -HT--TTTS-HHHHHHHHHHCCCH
T ss_pred -ccCCCCCCCHHHHHHHHHHHHhH
Confidence 57998 78899999999988863
No 28
>KOG2391|consensus
Probab=97.68 E-value=0.00014 Score=59.84 Aligned_cols=76 Identities=21% Similarity=0.436 Sum_probs=61.1
Q ss_pred eCCCCCCCCCcEEE--EEEEcCCCCCCCCCceeEeccc-----ccCccCCCCcEEeccCCCCCCCCcccccccCCCCC-c
Q psy15977 27 IGPPDTMYEGGFFK--AHLHFPKEYPLRPPKMKFVTEI-----WHPNIEKNGDVCISILHEPGDDKYGYERAYERWLP-V 98 (152)
Q Consensus 27 ~Gp~~tpy~gg~f~--~~i~~p~~yP~~pP~v~f~t~i-----~HPni~~~G~icl~~l~~~~~~~~~~~~~~~~W~p-~ 98 (152)
.|---.+|.|.+|. +.|.+.+.||..||.+....+- -|-+|+.+|.|.|..|. +|.+ +
T Consensus 56 ~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh--------------~W~~ps 121 (365)
T KOG2391|consen 56 DGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH--------------NWDPPS 121 (365)
T ss_pred cCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc--------------cCCCcc
Confidence 34444578887765 6777999999999999776541 38999999999999994 6988 7
Q ss_pred CCHHHHHHHHHHhhCCCC
Q psy15977 99 HTVETILISVISMLADPN 116 (152)
Q Consensus 99 ~ti~~iL~~i~~ll~~p~ 116 (152)
..+..++..+.+.|.++.
T Consensus 122 sdLv~Liq~l~a~f~~~p 139 (365)
T KOG2391|consen 122 SDLVGLIQELIAAFSEDP 139 (365)
T ss_pred chHHHHHHHHHHHhcCCC
Confidence 789999999999998633
No 29
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=97.26 E-value=0.0039 Score=44.56 Aligned_cols=102 Identities=23% Similarity=0.335 Sum_probs=67.6
Q ss_pred CeEEEecCCCCceeEEEEEeC--CCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcE--EeccCCC-CC
Q psy15977 8 GFSAGLVDDSDIYKWEVLIIG--PPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDV--CISILHE-PG 82 (152)
Q Consensus 8 g~~~~p~~~~n~~~w~~~i~G--p~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~i--cl~~l~~-~~ 82 (152)
|+..+.+.+ .-..|.+ |.| -+.+.|....-.+.|.+|+.||..+|.+.+..+-.... ..|.| |-+.... .+
T Consensus 13 g~~~E~v~e-g~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G 88 (122)
T PF14462_consen 13 GLRWETVTE-GGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDG 88 (122)
T ss_pred CceEEEEEe-CCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCC
Confidence 555555445 3334533 444 56677999999999999999999999988876432111 12334 4433322 23
Q ss_pred CCCcccccccCCCCCcC-CHHHHHHHHHHhhC
Q psy15977 83 DDKYGYERAYERWLPVH-TVETILISVISMLA 113 (152)
Q Consensus 83 ~~~~~~~~~~~~W~p~~-ti~~iL~~i~~ll~ 113 (152)
..-.++|.+...|+|.. +|.+.|..|...|.
T Consensus 89 ~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 89 RTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred eeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 33348888889999955 59999999887764
No 30
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.96 E-value=0.012 Score=44.03 Aligned_cols=63 Identities=21% Similarity=0.390 Sum_probs=51.1
Q ss_pred EEEEEcCCCCCCCCCceeEecccc---cCccCCC-----CcEEeccCCCCCCCCcccccccCCCCCcCCHHHHHHHHHHh
Q psy15977 40 KAHLHFPKEYPLRPPKMKFVTEIW---HPNIEKN-----GDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISM 111 (152)
Q Consensus 40 ~~~i~~p~~yP~~pP~v~f~t~i~---HPni~~~-----G~icl~~l~~~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~l 111 (152)
.+.|.|+.+||..+|.|.++-+.| +||++.. ..+|+..-.. ..|.++.++..+|..|...
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~------------~e~~~~~g~~~~l~rl~~W 123 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPW------------SEWRPSWGPEGFLDRLFDW 123 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCH------------HHhhhccCHHHHHHHHHHH
Confidence 367899999999999887777755 5788765 6799865542 6799999999999999998
Q ss_pred hCC
Q psy15977 112 LAD 114 (152)
Q Consensus 112 l~~ 114 (152)
|.+
T Consensus 124 l~~ 126 (162)
T PF14457_consen 124 LRD 126 (162)
T ss_pred HHH
Confidence 863
No 31
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=95.05 E-value=0.52 Score=31.65 Aligned_cols=26 Identities=15% Similarity=0.434 Sum_probs=22.4
Q ss_pred CCcEEEEEEEcCCCCCCCCCceeEec
Q psy15977 35 EGGFFKAHLHFPKEYPLRPPKMKFVT 60 (152)
Q Consensus 35 ~gg~f~~~i~~p~~yP~~pP~v~f~t 60 (152)
....+.+.+.+|++||..+|.|.+.+
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~ 64 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLN 64 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEEC
Confidence 34568999999999999999998876
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=94.35 E-value=0.12 Score=35.10 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=27.9
Q ss_pred CceeEEEEEe--CCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecc
Q psy15977 18 DIYKWEVLII--GPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTE 61 (152)
Q Consensus 18 n~~~w~~~i~--Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~ 61 (152)
+...+.+.+. ....+.-....+.+.+.||++||..+|.|...+.
T Consensus 28 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 28 SPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp SSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred CCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 3345556662 1233344556899999999999999999987764
No 33
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=91.85 E-value=0.22 Score=36.58 Aligned_cols=53 Identities=17% Similarity=0.367 Sum_probs=25.8
Q ss_pred eCCCCCCCCCcE----------EEEEEEcCCCCCCCCCceeEeccc-ccCccCCCCcEEeccCC
Q psy15977 27 IGPPDTMYEGGF----------FKAHLHFPKEYPLRPPKMKFVTEI-WHPNIEKNGDVCISILH 79 (152)
Q Consensus 27 ~Gp~~tpy~gg~----------f~~~i~~p~~yP~~pP~v~f~t~i-~HPni~~~G~icl~~l~ 79 (152)
.-+.||-|.|.+ |.+.+.+|..||..||.|..-.-- --.-.|..|+|||+.=.
T Consensus 55 sn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeLdGKTaKMYRGGkIClt~HF 118 (161)
T PF08694_consen 55 SNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPELDGKTAKMYRGGKICLTDHF 118 (161)
T ss_dssp E-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GGGTTT-SSBCCCCBB---TTH
T ss_pred cCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceeccccCCchhhhhcCceEeeeccc
Confidence 446667666643 456677899999999998653210 11234568999997653
No 34
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=74.55 E-value=8.2 Score=32.20 Aligned_cols=34 Identities=29% Similarity=0.609 Sum_probs=29.6
Q ss_pred CCCCcEEEEEEEcCCCCCCCCCceeEec-ccccCc
Q psy15977 33 MYEGGFFKAHLHFPKEYPLRPPKMKFVT-EIWHPN 66 (152)
Q Consensus 33 py~gg~f~~~i~~p~~yP~~pP~v~f~t-~i~HPn 66 (152)
||.|...+-+|.|...+|..||.+.|.. .-|+|-
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd 95 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPD 95 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCC
Confidence 5999999999999999999999999973 347774
No 35
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=73.39 E-value=7.4 Score=29.24 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=15.1
Q ss_pred eccccc---CccCCCCcEEeccCC
Q psy15977 59 VTEIWH---PNIEKNGDVCISILH 79 (152)
Q Consensus 59 ~t~i~H---Pni~~~G~icl~~l~ 79 (152)
.|++|| +||+.+|+||+....
T Consensus 89 ~T~Ly~aPf~NV~~~g~vC~G~~~ 112 (175)
T PF14460_consen 89 DTPLYHAPFFNVYSNGSVCWGNNS 112 (175)
T ss_pred CCeeEeCCccccCCCCcEeeCCCc
Confidence 344555 499999999987643
No 36
>KOG3357|consensus
Probab=69.69 E-value=7.9 Score=28.07 Aligned_cols=59 Identities=19% Similarity=0.392 Sum_probs=37.0
Q ss_pred eEEEEEeCCCCCCCCCcE----------EEEEEEcCCCCCCCCCceeEeccc-ccCccCCCCcEEeccCC
Q psy15977 21 KWEVLIIGPPDTMYEGGF----------FKAHLHFPKEYPLRPPKMKFVTEI-WHPNIEKNGDVCISILH 79 (152)
Q Consensus 21 ~w~~~i~Gp~~tpy~gg~----------f~~~i~~p~~yP~~pP~v~f~t~i-~HPni~~~G~icl~~l~ 79 (152)
.|.-.=.-++||-|-|.+ |.+.+.+|-.||-.+|.|..-.-- ----.+..|.||+..-.
T Consensus 52 dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpeldgktakmyrggkiclt~hf 121 (167)
T KOG3357|consen 52 DWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPELDGKTAKMYRGGKICLTDHF 121 (167)
T ss_pred cceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccccCchhhhhhcCceEeecccc
Confidence 454444668888888853 445566799999999988542100 00123457999996543
No 37
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=64.14 E-value=13 Score=29.39 Aligned_cols=38 Identities=24% Similarity=0.443 Sum_probs=25.0
Q ss_pred cccccC---ccCCCCcEEeccCCCCCCCCcccccccCCCCC-cCCHHHHHHHHHHhhCC
Q psy15977 60 TEIWHP---NIEKNGDVCISILHEPGDDKYGYERAYERWLP-VHTVETILISVISMLAD 114 (152)
Q Consensus 60 t~i~HP---ni~~~G~icl~~l~~~~~~~~~~~~~~~~W~p-~~ti~~iL~~i~~ll~~ 114 (152)
|++||. ||+++|+||+.... .| ..++.+ +......|.+
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~~----------------~P~~~~~~~-i~~we~~FF~ 172 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNAR----------------LPDRPTVAN-ISAWEDAFFS 172 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCCc----------------CCCCcCHHH-HHHHHHHHhC
Confidence 334554 99999999986542 44 345666 7777776654
No 38
>KOG4018|consensus
Probab=56.86 E-value=22 Score=27.83 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=26.3
Q ss_pred CceeEEEEEeCCCCCCCCC--cEEEEEEEcCCCCCCCCCcee
Q psy15977 18 DIYKWEVLIIGPPDTMYEG--GFFKAHLHFPKEYPLRPPKMK 57 (152)
Q Consensus 18 n~~~w~~~i~Gp~~tpy~g--g~f~~~i~~p~~yP~~pP~v~ 57 (152)
++..+.++|. ...+-+.. +.+.+.+.++++||..+|.|.
T Consensus 29 ~~~~f~v~iq-~e~~e~d~~~~~~~l~~s~tEnYPDe~Pli~ 69 (215)
T KOG4018|consen 29 DPPIFEVTIQ-YEEGENDEPKGSFILVFSLTENYPDEAPLIE 69 (215)
T ss_pred CCccceeeee-cccccCCCccccEEEEEEccCCCCCCCccee
Confidence 3444666665 22222222 278899999999999999993
No 39
>KOG0309|consensus
Probab=51.67 E-value=54 Score=30.71 Aligned_cols=42 Identities=21% Similarity=0.406 Sum_probs=29.4
Q ss_pred eeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCC-CCCceeEecc
Q psy15977 20 YKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPL-RPPKMKFVTE 61 (152)
Q Consensus 20 ~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~-~pP~v~f~t~ 61 (152)
+.-.+.+.||-...-.....++.|.||.+||. .+|+++|..+
T Consensus 449 Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 449 RSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred ceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 45566677665444222455889999999998 6889888754
No 40
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=51.55 E-value=19 Score=30.06 Aligned_cols=24 Identities=21% Similarity=0.530 Sum_probs=21.4
Q ss_pred cEEEEEEEcCCCCCCCCCceeEec
Q psy15977 37 GFFKAHLHFPKEYPLRPPKMKFVT 60 (152)
Q Consensus 37 g~f~~~i~~p~~yP~~pP~v~f~t 60 (152)
-.|-++|.+|..||...|.++|.+
T Consensus 306 F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 306 FTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred eEEEEEEeccCCCCCcCCeEEEEe
Confidence 357788999999999999999987
No 41
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=49.46 E-value=22 Score=29.10 Aligned_cols=65 Identities=20% Similarity=0.427 Sum_probs=42.9
Q ss_pred CCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCCCCCCCcccccccCCC
Q psy15977 16 DSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEPGDDKYGYERAYERW 95 (152)
Q Consensus 16 ~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~~~~~~~~~~~~~~W 95 (152)
++++...++.+.. + ...-.++|.++.+||.++|.+...-++ .. ...|
T Consensus 122 d~~ls~i~l~~~D---~---~R~H~l~l~l~~~yp~~~p~~~~~~P~-------------~~--------------~~~w 168 (291)
T PF09765_consen 122 DDDLSTIKLKIFD---S---SRQHYLELKLPSNYPFEPPSCSLDLPI-------------PF--------------SLSW 168 (291)
T ss_dssp -CCCSEEEEEEET---T---CEEEEEEEETTTTTTTSEEEECS-TTS--------------H--------------HHHH
T ss_pred CCCccEEEEEEEc---C---CceEEEEEEECCCCCCCCceeeCCCCc-------------ch--------------hhhh
Confidence 3477888888872 1 256779999999999999975333321 11 1458
Q ss_pred CC-cCCHHHHHHHHHHhhC
Q psy15977 96 LP-VHTVETILISVISMLA 113 (152)
Q Consensus 96 ~p-~~ti~~iL~~i~~ll~ 113 (152)
.+ ..++.+++..++..+.
T Consensus 169 ~~~~ssL~~v~~qF~~~le 187 (291)
T PF09765_consen 169 SPSQSSLKDVVQQFQEALE 187 (291)
T ss_dssp HCHT-SHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHH
Confidence 88 7788888777776653
No 42
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=46.93 E-value=28 Score=25.18 Aligned_cols=25 Identities=32% Similarity=0.650 Sum_probs=22.5
Q ss_pred CcEEEEEEEcCCCCC-CCCCceeEec
Q psy15977 36 GGFFKAHLHFPKEYP-LRPPKMKFVT 60 (152)
Q Consensus 36 gg~f~~~i~~p~~yP-~~pP~v~f~t 60 (152)
.|.|.|.-.+|-.|| .+||-|.|.-
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 488999999999999 9999998875
No 43
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=42.50 E-value=35 Score=26.00 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.3
Q ss_pred CCcEEEEEEEcCCCCCCCCCceeEec
Q psy15977 35 EGGFFKAHLHFPKEYPLRPPKMKFVT 60 (152)
Q Consensus 35 ~gg~f~~~i~~p~~yP~~pP~v~f~t 60 (152)
+.|.|.|.-.+|--||.++|-|.|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 35889999999999999999998875
No 44
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=41.62 E-value=1.5e+02 Score=22.23 Aligned_cols=89 Identities=18% Similarity=0.313 Sum_probs=52.4
Q ss_pred eEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecc------------------------------cccC-----
Q psy15977 21 KWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTE------------------------------IWHP----- 65 (152)
Q Consensus 21 ~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~------------------------------i~HP----- 65 (152)
...|++..|+-.|=- -...++|.| .||-..||+|.|+.+ ++|+
T Consensus 38 ~~~~iF~~~kvaP~~-~~~~lr~d~-~n~Dl~PPSV~fvDp~T~~~~~~k~l~~~mlr~~~L~~app~~~~~l~qq~~~s 115 (177)
T PF14455_consen 38 TADVIFAAPKVAPRS-IGLRLRFDF-TNWDLRPPSVVFVDPFTGTPLARKDLGLKMLRRPHLPGAPPEMISVLMQQQALS 115 (177)
T ss_pred eEEEEeeCCccCccc-cceEEEEec-cccCcCCCceEEeccccCCcccccccchhhhhcCCCCCCCchhhhhcccccchh
Confidence 344555545555531 224566666 789999999999977 2344
Q ss_pred -----ccCC-CCc--EEeccCCCCCCCCcccccccCCCC-----CcCCHHHHHHHHHHhhCC
Q psy15977 66 -----NIEK-NGD--VCISILHEPGDDKYGYERAYERWL-----PVHTVETILISVISMLAD 114 (152)
Q Consensus 66 -----ni~~-~G~--icl~~l~~~~~~~~~~~~~~~~W~-----p~~ti~~iL~~i~~ll~~ 114 (152)
.-++ +|+ +|+.-..+.+.+ .+-.++.|. ..+++--||.+|-..-..
T Consensus 116 ~~~~~~ah~~~~~pF~Cm~G~rEYH~h---~sH~gd~W~~~Rgsg~~~L~~Il~qiw~~~~~ 174 (177)
T PF14455_consen 116 LQDFLSAHPNTGRPFLCMRGVREYHTH---PSHTGDLWLLHRGSGEGDLGGILDQIWRAWKN 174 (177)
T ss_pred hhhhccCCCCCCCcEEEeccchhhcCC---cccccchHhhhcccCCchhHHHHHHHHHhccC
Confidence 1112 455 898766543333 333445563 356788888887665443
No 45
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=38.89 E-value=93 Score=19.69 Aligned_cols=43 Identities=7% Similarity=-0.051 Sum_probs=30.8
Q ss_pred HHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhcc
Q psy15977 107 SVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSY 151 (152)
Q Consensus 107 ~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~ 151 (152)
.|+.|+..-++...++.++.++ ..+=-+.|...+-..+.++|+
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~--Ll~laddFv~~v~~~ac~lAK 46 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEEL--LLELADDFVDDVVSFACRLAK 46 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHh
Confidence 4667777778888899999999 888888999988888777764
No 46
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=34.59 E-value=57 Score=24.11 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=22.2
Q ss_pred CcEEEEEEEcCCCCC-----CCCCceeEec
Q psy15977 36 GGFFKAHLHFPKEYP-----LRPPKMKFVT 60 (152)
Q Consensus 36 gg~f~~~i~~p~~yP-----~~pP~v~f~t 60 (152)
.|.|.|.-.+|--|| .+||-|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 388999999999999 8999998875
No 47
>KOG0662|consensus
Probab=30.09 E-value=50 Score=25.87 Aligned_cols=55 Identities=20% Similarity=0.504 Sum_probs=42.6
Q ss_pred CCCCceeEecccccCccC--CCCcEEeccCCCCCCCCcccccccCCC--CCcCCHHHHHHHHHHhhCCCCCC
Q psy15977 51 LRPPKMKFVTEIWHPNIE--KNGDVCISILHEPGDDKYGYERAYERW--LPVHTVETILISVISMLADPNDE 118 (152)
Q Consensus 51 ~~pP~v~f~t~i~HPni~--~~G~icl~~l~~~~~~~~~~~~~~~~W--~p~~ti~~iL~~i~~ll~~p~~~ 118 (152)
.+||.|.|-.++|.-.|+ +-|.|--.+.+ .+| -|.-.+.+-|..|..+|..|+-+
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelan-------------agrplfpg~dvddqlkrif~~lg~p~ed 225 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELAN-------------AGRPLFPGNDVDDQLKRIFRLLGTPTED 225 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhh-------------cCCCCCCCCcHHHHHHHHHHHhCCCccc
Confidence 479999999999999887 46766656554 344 56778999999999998877654
No 48
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=27.01 E-value=1.4e+02 Score=19.98 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=20.2
Q ss_pred CCCcEEEEEEEcCCCCCCCCCceeEecc
Q psy15977 34 YEGGFFKAHLHFPKEYPLRPPKMKFVTE 61 (152)
Q Consensus 34 y~gg~f~~~i~~p~~yP~~pP~v~f~t~ 61 (152)
-||..+.+.-.-|+.|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 35667778777889999 599998865
No 49
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=26.73 E-value=1.9e+02 Score=18.96 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=27.6
Q ss_pred eeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecc
Q psy15977 20 YKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTE 61 (152)
Q Consensus 20 ~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~ 61 (152)
.+|.+-+.|+.+.....-+=++...+.+.|+. |...+..+
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~p 41 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKP 41 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSST
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCC
Confidence 58999999988865555667788888888886 66655554
No 50
>KOG1047|consensus
Probab=25.91 E-value=65 Score=28.96 Aligned_cols=29 Identities=31% Similarity=0.595 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEEEcCCCCCC---CCCceeEecc
Q psy15977 32 TMYEGGFFKAHLHFPKEYPL---RPPKMKFVTE 61 (152)
Q Consensus 32 tpy~gg~f~~~i~~p~~yP~---~pP~v~f~t~ 61 (152)
+||.=|.|-+ +.+|++||+ +-|-++|+|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 5777788877 568999995 8999999996
No 51
>PF08804 gp32: gp32 DNA binding protein like; InterPro: IPR012339 This entry is represented by the Bacteriophage T4, Gp32, single-stranded DNA-binding protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Gp32 is essential for T4 DNA replication, recombination and repair, acting to stimulate replisome processing and accuracy through its binding to ssDNA as the replication fork advances. The crystal structure of Gp32 shows an ssDNA binding cleft comprised of regions from three structural subdomains, through which ssDNA can slide freely []. The structure of Gp32 is similar to other phage ssDNA-binding proteins such as Gp2.5 from bacteriophage T4, and gene V protein, both of which have a nucleic acid-binding OB-type fold. However, Gp32 contains a zinc-finger subdomain at residues 63-111 that is not found in the other two phage proteins.; GO: 0003697 single-stranded DNA binding; PDB: 1GPC_A 2A1K_B 2ATQ_B.
Probab=25.42 E-value=40 Score=22.95 Aligned_cols=34 Identities=12% Similarity=-0.013 Sum_probs=21.1
Q ss_pred CCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhcc
Q psy15977 118 ESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSY 151 (152)
Q Consensus 118 ~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~ 151 (152)
..|+...+.+..+|..+.+++.+.|+++.++++|
T Consensus 60 ~cPVc~~~~~~~lwn~~~e~~~~~a~~~kRk~sy 93 (94)
T PF08804_consen 60 SCPVCEHISNRDLWNSGKEEDKKIARKQKRKTSY 93 (94)
T ss_dssp TSHHHHHHHHTTHHHH-HHHHHH----HS-EEEE
T ss_pred CCCcccccccccccccCChHHhhhhhhhhhcccc
Confidence 4677777444444999999999999999888876
No 52
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=25.25 E-value=1.8e+02 Score=18.27 Aligned_cols=43 Identities=9% Similarity=-0.065 Sum_probs=32.0
Q ss_pred HHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhcc
Q psy15977 107 SVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSY 151 (152)
Q Consensus 107 ~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~ 151 (152)
.|+.|+..-++...+..+|... +.+=-+.|...+-+.+.++|.
T Consensus 6 ~l~~lv~~id~~~~~~~da~~~--l~~~~e~fv~~v~~~a~~lAk 48 (72)
T cd07981 6 KLQELLKEIDPREQLDPDVEEL--LLEIADDFVDDVVEDACRLAK 48 (72)
T ss_pred HHHHHHHhhCCCCCcCHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3455555545567788999998 888888998888887777763
No 53
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=23.40 E-value=1.1e+02 Score=23.48 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=20.8
Q ss_pred CcEEEEEEEcCCCCCC-----CCCceeEec
Q psy15977 36 GGFFKAHLHFPKEYPL-----RPPKMKFVT 60 (152)
Q Consensus 36 gg~f~~~i~~p~~yP~-----~pP~v~f~t 60 (152)
.|.|.|.-..|-.||. +||-|.|.-
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~V 125 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVSV 125 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 4779999999999998 888776653
No 54
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=23.34 E-value=60 Score=20.02 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=11.9
Q ss_pred CCCCcCCHHHHHHHHHHhh
Q psy15977 94 RWLPVHTVETILISVISML 112 (152)
Q Consensus 94 ~W~p~~ti~~iL~~i~~ll 112 (152)
+|.|.++|.+++...-...
T Consensus 37 gW~p~~~L~~~i~~~w~W~ 55 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNWQ 55 (62)
T ss_dssp ----SSSHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHH
Confidence 6999999999998765543
No 55
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=22.47 E-value=2.1e+02 Score=23.14 Aligned_cols=47 Identities=26% Similarity=0.522 Sum_probs=30.8
Q ss_pred CceeEEEEEeCCCCCCC-CC---cEEEEEEEcC-----CCCCCCCCceeEecccccC
Q psy15977 18 DIYKWEVLIIGPPDTMY-EG---GFFKAHLHFP-----KEYPLRPPKMKFVTEIWHP 65 (152)
Q Consensus 18 n~~~w~~~i~Gp~~tpy-~g---g~f~~~i~~p-----~~yP~~pP~v~f~t~i~HP 65 (152)
|.--|++.... .+|-- .| +.|+..|.+. -|-||+||+|..+++-|-.
T Consensus 101 Dp~PWkl~YrV-~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft~ 156 (276)
T PF00845_consen 101 DPIPWKLYYRV-EDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFTE 156 (276)
T ss_pred CCCCeEEEEEe-ecCccccceeeeeeeceeeecccccccccccCCCceEeeecccCc
Confidence 45557766653 33322 22 3456666665 6889999999999997644
No 56
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=22.35 E-value=1.6e+02 Score=19.42 Aligned_cols=24 Identities=0% Similarity=-0.164 Sum_probs=18.5
Q ss_pred HHHHHhhhhHhhHHHHHHHHHHHHHH
Q psy15977 123 VDAAVSQYSSENYHWVRRKKIFIKSM 148 (152)
Q Consensus 123 ~~aa~~~~~~~~~~~f~~~~~~~~~~ 148 (152)
.+...+ .++|+++|+...++....
T Consensus 7 D~L~~L--A~~dPe~fe~lr~~~~ee 30 (83)
T PF11333_consen 7 DELKEL--AQNDPEAFEQLRQELIEE 30 (83)
T ss_pred HHHHHH--HHhCHHHHHHHHHHHHHH
Confidence 356677 889999999888877653
No 57
>PF14798 Ca_hom_mod: Calcium homeostasis modulator
Probab=22.19 E-value=89 Score=25.01 Aligned_cols=20 Identities=5% Similarity=-0.124 Sum_probs=17.1
Q ss_pred HhhHHHHHHHHHHHHHHhcc
Q psy15977 132 SENYHWVRRKKIFIKSMLSY 151 (152)
Q Consensus 132 ~~~~~~f~~~~~~~~~~~~~ 151 (152)
.++++.|+++++++++++|.
T Consensus 219 ~~E~~lF~~~~~eHA~~lA~ 238 (251)
T PF14798_consen 219 EKEQELFDETAKEHARKLAE 238 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677999999999999885
No 58
>smart00107 BTK Bruton's tyrosine kinase Cys-rich motif. Zinc-binding motif containing conserved cysteines and a histidine. Always found C-terminal to PH domains (but not all PH domains are followed by BTK motifs). The crystal structure shows this motif packs against the PH domain. The PH+Btk module pair has been called the Tec homology (TH) region.
Probab=21.31 E-value=41 Score=18.69 Aligned_cols=16 Identities=25% Similarity=0.653 Sum_probs=12.1
Q ss_pred cccCccCCCCc-EEecc
Q psy15977 62 IWHPNIEKNGD-VCISI 77 (152)
Q Consensus 62 i~HPni~~~G~-icl~~ 77 (152)
-|||.+..+|+ .|..-
T Consensus 7 ~yHP~~~~~G~W~CC~q 23 (36)
T smart00107 7 KYHPSFWVDGKWLCCQQ 23 (36)
T ss_pred ccCCCceeCCeEccCCC
Confidence 38999998887 66543
No 59
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=21.21 E-value=47 Score=24.29 Aligned_cols=18 Identities=28% Similarity=0.835 Sum_probs=13.4
Q ss_pred EEEEEEcCCCCCCCCCce
Q psy15977 39 FKAHLHFPKEYPLRPPKM 56 (152)
Q Consensus 39 f~~~i~~p~~yP~~pP~v 56 (152)
|+-.-.+|.|||+.+|..
T Consensus 104 YR~KW~LP~dYPMvAPnY 121 (148)
T COG4957 104 YRAKWGLPPDYPMVAPNY 121 (148)
T ss_pred HHHhcCCCCCCCccchHH
Confidence 344557899999998853
No 60
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=20.81 E-value=1.3e+02 Score=22.81 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=18.9
Q ss_pred cEEEEEEEcCCCCCC-----CCCceeEe
Q psy15977 37 GFFKAHLHFPKEYPL-----RPPKMKFV 59 (152)
Q Consensus 37 g~f~~~i~~p~~yP~-----~pP~v~f~ 59 (152)
|.|.|.-.+|--||. +||-|.|.
T Consensus 93 G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 93 GRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 789999999999995 77766554
Done!