Query psy15977
Match_columns 152
No_of_seqs 140 out of 1104
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 17:50:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h8k_A Ubiquitin-conjugating e 100.0 1.9E-48 6.5E-53 290.4 16.5 149 2-152 16-164 (164)
2 2ucz_A UBC7, ubiquitin conjuga 100.0 1.6E-48 5.5E-53 291.1 15.5 148 2-151 17-164 (165)
3 2c2v_B Ubiquitin-conjugating e 100.0 3E-47 1E-51 281.5 13.7 135 2-152 18-152 (154)
4 2r0j_A Ubiquitin carrier prote 100.0 4.5E-47 1.5E-51 279.1 13.9 135 2-152 14-148 (149)
5 4gpr_A Ubiquitin-conjugating e 100.0 7.4E-47 2.5E-51 278.5 14.9 134 2-151 17-150 (151)
6 2ayv_A Ubiquitin-conjugating e 100.0 9.8E-47 3.4E-51 281.9 15.0 133 2-150 34-166 (166)
7 2awf_A Ubiquitin-conjugating e 100.0 3.6E-47 1.2E-51 285.7 11.7 142 2-145 30-172 (172)
8 1fxt_A Ubiquitin-conjugating e 100.0 3.6E-47 1.2E-51 279.6 10.8 134 2-150 14-148 (149)
9 2c4o_A Ubiquitin-conjugating e 100.0 2.6E-46 8.7E-51 279.4 15.5 134 1-150 31-164 (165)
10 1zdn_A Ubiquitin-conjugating e 100.0 9.1E-47 3.1E-51 280.0 12.8 133 2-150 26-158 (158)
11 1z2u_A Ubiquitin-conjugating e 100.0 1.8E-46 6E-51 276.2 14.0 133 2-150 17-149 (150)
12 1ayz_A UBC2, ubiquitin-conjuga 100.0 1.9E-46 6.5E-51 281.0 14.4 134 2-151 17-150 (169)
13 2aak_A UBC1, ubiquitin conjuga 100.0 3E-46 1E-50 275.5 14.5 134 2-151 17-150 (152)
14 2e2c_A Ubiquitin conjugating e 100.0 3.4E-46 1.1E-50 276.3 14.2 134 2-152 22-155 (156)
15 1jat_A Ubiquitin-conjugating e 100.0 1.9E-46 6.5E-51 277.4 12.7 134 2-151 18-151 (155)
16 3rz3_A Ubiquitin-conjugating e 100.0 3E-46 1E-50 283.1 13.4 148 1-150 19-172 (183)
17 1yh2_A HSPC150 protein similar 100.0 9.7E-46 3.3E-50 277.1 15.3 138 2-151 17-154 (169)
18 3rcz_B SUMO-conjugating enzyme 100.0 7.5E-46 2.6E-50 276.3 13.8 137 1-150 22-162 (163)
19 2gjd_A Ubiquitin-conjugating e 100.0 1.3E-45 4.3E-50 273.6 13.5 137 2-151 17-157 (157)
20 2bep_A Ubiquitin-conjugating e 100.0 3.4E-45 1.2E-49 271.7 15.8 132 5-152 27-159 (159)
21 3bzh_A Ubiquitin-conjugating e 100.0 3.3E-45 1.1E-49 279.6 14.9 133 2-150 61-193 (194)
22 1i7k_A Ubiquitin-conjugating e 100.0 1.6E-45 5.6E-50 278.2 12.1 134 2-152 43-176 (179)
23 2f4z_A Tgtwinscan_2721 - E2 do 100.0 3.5E-45 1.2E-49 279.2 13.9 130 7-152 63-193 (193)
24 2grr_A Ubiquitin-conjugating e 100.0 3.7E-45 1.3E-49 272.0 13.2 138 2-152 20-161 (161)
25 2pwq_A Ubiquitin conjugating e 100.0 2.3E-45 7.9E-50 284.5 12.4 134 2-151 36-170 (216)
26 3fn1_B NEDD8-conjugating enzym 100.0 7.9E-45 2.7E-49 271.6 14.4 141 1-151 26-167 (167)
27 1tte_A Ubiquitin-conjugating e 100.0 1.3E-45 4.4E-50 285.7 9.5 136 1-151 14-150 (215)
28 1wzv_A Ubiquitin-conjugating e 100.0 8.7E-45 3E-49 268.4 13.4 134 2-151 17-151 (155)
29 3k9o_A Ubiquitin-conjugating e 100.0 3.2E-44 1.1E-48 275.5 15.8 132 5-152 24-156 (201)
30 1c4z_D UBCH7, ubiquitin conjug 100.0 1.2E-44 4.2E-49 267.4 12.2 136 1-151 14-149 (154)
31 1yrv_A Ubiquitin-conjugating l 100.0 2.9E-44 1E-48 269.1 10.9 132 2-148 36-168 (169)
32 1y8x_A Ubiquitin-conjugating e 100.0 2.8E-43 9.5E-48 261.7 15.2 129 4-148 19-147 (160)
33 3e46_A Ubiquitin-conjugating e 100.0 5.1E-43 1.7E-47 276.8 15.8 132 5-152 76-208 (253)
34 2onu_A Ubiquitin-conjugating e 100.0 1.1E-43 3.7E-48 262.0 10.8 129 7-151 17-147 (152)
35 2nvu_C NEDD8-conjugating enzym 100.0 6.2E-43 2.1E-47 264.3 14.8 130 4-149 39-168 (180)
36 2y9m_A Ubiquitin-conjugating e 100.0 1.8E-42 6.1E-47 260.1 15.5 129 8-150 36-167 (172)
37 2z5d_A Ubiquitin-conjugating e 100.0 6.3E-43 2.2E-47 263.9 9.4 128 7-151 40-169 (179)
38 4ddg_A Ubiquitin-conjugating e 100.0 7.1E-42 2.4E-46 285.7 14.2 135 1-151 15-149 (399)
39 3o2u_A NEDD8-conjugating enzym 100.0 1.8E-41 6.2E-46 258.2 13.8 130 5-150 43-178 (190)
40 1yf9_A Ubiquitin carrier prote 100.0 1.2E-41 4.1E-46 255.4 10.5 122 15-151 33-156 (171)
41 4ds2_A Ubiquitin-conjugating e 100.0 1.8E-39 6.1E-44 242.7 11.3 122 6-143 37-163 (167)
42 2q0v_A Ubiquitin-conjugating e 100.0 1.1E-39 3.7E-44 241.5 9.3 117 2-134 34-156 (156)
43 1jat_B Ubiquitin-conjugating e 100.0 5.8E-39 2E-43 233.2 6.0 113 2-128 19-137 (138)
44 2fo3_A Ubiquitin-conjugating e 100.0 5.3E-38 1.8E-42 224.6 10.9 104 2-119 19-123 (125)
45 3ceg_A Baculoviral IAP repeat- 100.0 8.8E-38 3E-42 253.6 11.8 139 3-150 90-242 (323)
46 2a4d_A Ubiquitin-conjugating e 100.0 9.8E-38 3.4E-42 231.7 10.3 115 2-127 38-157 (160)
47 2h2y_A Ubiquitin-conjugating e 100.0 3.5E-37 1.2E-41 223.3 11.4 102 2-117 33-135 (136)
48 2hlw_A Ubiquitin-conjugating e 100.0 2.2E-37 7.4E-42 232.0 5.7 114 2-126 48-166 (170)
49 2a7l_A Hypothetical ubiquitin- 100.0 4.9E-36 1.7E-40 217.3 9.4 98 2-113 35-136 (136)
50 2f4w_A Ubiquitin-conjugating e 100.0 6.2E-34 2.1E-38 216.2 12.1 105 2-119 27-131 (187)
51 1zuo_A Hypothetical protein LO 100.0 4.1E-35 1.4E-39 222.5 2.0 100 6-118 47-159 (186)
52 2z6o_A UFM1-conjugating enzyme 99.9 8.2E-24 2.8E-28 156.2 2.0 96 16-128 52-158 (172)
53 3r3q_A Suppressor protein STP2 99.8 8.7E-20 3E-24 135.1 8.2 91 15-119 56-161 (162)
54 3kpa_A Probable ubiquitin fold 99.6 2.1E-16 7.3E-21 114.5 1.7 59 20-78 58-127 (168)
55 3obq_A Tumor susceptibility ge 99.5 1.7E-14 5.8E-19 105.0 7.0 80 16-114 50-138 (146)
56 2ebm_A RWD domain-containing p 95.6 0.04 1.4E-06 37.9 6.8 42 19-60 37-78 (128)
57 2daw_A RWD domain containing p 93.8 0.3 1E-05 34.8 7.8 23 38-60 76-98 (154)
58 2day_A Ring finger protein 25; 93.4 0.31 1E-05 33.3 7.0 42 19-60 39-82 (128)
59 2yz0_A Serine/threonine-protei 92.6 0.35 1.2E-05 33.5 6.4 41 19-60 45-85 (138)
60 2ebk_A RWD domain-containing p 91.6 0.41 1.4E-05 32.8 5.6 41 19-60 39-79 (128)
61 1ukx_A GCN2, GCN2 EIF2alpha ki 91.0 0.29 1E-05 33.8 4.4 24 37-60 63-86 (137)
62 3zqs_A E3 ubiquitin-protein li 89.6 1.1 3.6E-05 33.3 6.6 65 17-113 23-87 (186)
63 2dax_A Protein C21ORF6; RWD do 87.3 0.42 1.4E-05 33.8 3.1 24 37-60 73-96 (152)
64 2cwb_A Chimera of immunoglobul 68.3 1 3.6E-05 30.5 0.0 30 116-147 22-51 (108)
65 1h3o_B Transcription initiatio 26.4 74 0.0025 19.8 3.5 42 108-151 11-52 (76)
66 2jrw_A Cyclic extended PEP.1; 25.9 25 0.00086 17.0 0.9 16 50-65 4-19 (26)
67 3rls_A YAF9, protein AF-9 homo 24.3 2E+02 0.0069 20.7 6.0 44 16-61 29-72 (175)
68 2bum_A Protocatechuate 3,4-dio 23.8 69 0.0024 23.7 3.5 26 35-60 109-139 (209)
No 1
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=1.9e-48 Score=290.40 Aligned_cols=149 Identities=50% Similarity=0.846 Sum_probs=142.5
Q ss_pred CCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCCC
Q psy15977 2 NKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEP 81 (152)
Q Consensus 2 ~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~ 81 (152)
++++++||++.+++++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|+||+++|..+
T Consensus 16 ~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV~~~G~iCl~iL~~~ 95 (164)
T 3h8k_A 16 TLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAP 95 (164)
T ss_dssp HHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTSBBCCGGGSCS
T ss_pred HhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCCCCCCcEeeecccCc
Confidence 56789999999977779999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhccC
Q psy15977 82 GDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSYG 152 (152)
Q Consensus 82 ~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~~ 152 (152)
+.+.++++.+.++|+|++||++||++|++||.+|++++|+|.+||++ |++|+++|+++|++++++.+.|
T Consensus 96 ~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~--~~~~~~~f~~~~~~~~~~s~~~ 164 (164)
T 3h8k_A 96 GDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKM--WRDDREQFYKIAKQIVQKSLGL 164 (164)
T ss_dssp CSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHH--HHHCHHHHHHHHHHHHHHHHTC
T ss_pred ccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHH--HHHCHHHHHHHHHHHHHHhhcC
Confidence 88888888888999999999999999999999999999999999999 9999999999999999998764
No 2
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.6e-48 Score=291.11 Aligned_cols=148 Identities=49% Similarity=0.809 Sum_probs=141.6
Q ss_pred CCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCCC
Q psy15977 2 NKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEP 81 (152)
Q Consensus 2 ~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~ 81 (152)
++++++||++.+++++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|+||||||+++|+||+++|..+
T Consensus 17 ~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~~G~iCl~iL~~~ 96 (165)
T 2ucz_A 17 IKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSP 96 (165)
T ss_dssp HHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTBCTTSBBCCGGGSCC
T ss_pred HhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCCCCCCCcEeehhhCCc
Confidence 46789999999977779999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhcc
Q psy15977 82 GDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSY 151 (152)
Q Consensus 82 ~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~ 151 (152)
+.+.++++.+.++|+|++||++||++|++||.+|++++|+|.+||++ |++|+++|+++|++++++++.
T Consensus 97 ~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~--~~~~~~~y~~~v~~~~~~~~~ 164 (165)
T 2ucz_A 97 GDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACIL--WRDNRPEFERQVKLSILKSLG 164 (165)
T ss_dssp CSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHH--HHTTHHHHHHHHHHHHHHHTT
T ss_pred cccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHH--HHHCHHHHHHHHHHHHHHHhh
Confidence 88888888888999999999999999999999999999999999999 999999999999999998764
No 3
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3e-47 Score=281.50 Aligned_cols=135 Identities=34% Similarity=0.675 Sum_probs=127.6
Q ss_pred CCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCCC
Q psy15977 2 NKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEP 81 (152)
Q Consensus 2 ~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~ 81 (152)
++++++||++.+ .++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|.||+++|+
T Consensus 18 ~~~~~~~i~~~~-~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~-- 94 (154)
T 2c2v_B 18 LAEPVPGIKAEP-DESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILK-- 94 (154)
T ss_dssp HHSCCTTEEEEE-CSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTCBBCCHHHH--
T ss_pred HhCCCCCEEEEE-CCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCccCCeEEchhcc--
Confidence 467899999999 55699999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhccC
Q psy15977 82 GDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSYG 152 (152)
Q Consensus 82 ~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~~ 152 (152)
++|+|++||++||++|++||.+|++++|+|.+||++ |++|+++|+++|+++++++|.+
T Consensus 95 -----------~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~--~~~d~~~f~~~ar~~~~~~a~~ 152 (154)
T 2c2v_B 95 -----------DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQ--WKTNEAQAIETARAWTRLYAMN 152 (154)
T ss_dssp -----------TSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHH--HHHHHHHHHHHHHHHHHHHSSC
T ss_pred -----------CCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHH--HHHCHHHHHHHHHHHHHHhcCC
Confidence 789999999999999999999999999999999999 9999999999999999999853
No 4
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=4.5e-47 Score=279.12 Aligned_cols=135 Identities=30% Similarity=0.644 Sum_probs=129.7
Q ss_pred CCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCCC
Q psy15977 2 NKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEP 81 (152)
Q Consensus 2 ~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~ 81 (152)
++++++||++.+ +++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|+||+++|.
T Consensus 14 ~~~~~~~i~~~~-~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~-- 90 (149)
T 2r0j_A 14 ANEPPPGIMAVP-VPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILK-- 90 (149)
T ss_dssp HHSCCTTEEEEE-ETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCBBCCGGGT--
T ss_pred HhCCCCCEEEEE-CCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCCCEEechhcC--
Confidence 467899999999 55699999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhccC
Q psy15977 82 GDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSYG 152 (152)
Q Consensus 82 ~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~~ 152 (152)
++|+|++||++||++|++||.+|++++|+|.+||++ |++|+++|+++|+++++++|.+
T Consensus 91 -----------~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~--~~~~~~~f~~~~~~~~~~~a~~ 148 (149)
T 2r0j_A 91 -----------DKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEH--FKQDKNDAEHVARQWNKIYANN 148 (149)
T ss_dssp -----------TTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHH--HHHCHHHHHHHHHHHHHHHSCC
T ss_pred -----------CCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHH--HHHCHHHHHHHHHHHHHHHccC
Confidence 789999999999999999999999999999999999 9999999999999999999853
No 5
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=7.4e-47 Score=278.53 Aligned_cols=134 Identities=35% Similarity=0.723 Sum_probs=129.3
Q ss_pred CCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCCC
Q psy15977 2 NKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEP 81 (152)
Q Consensus 2 ~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~ 81 (152)
+++++.||++.+ .++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+++|+||+++|.
T Consensus 17 ~~~~~~~i~~~p-~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~iL~-- 93 (151)
T 4gpr_A 17 QQDPPCNCSAGP-VGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKNGVICLDILK-- 93 (151)
T ss_dssp HHSCCTTEEEEE-SSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGT--
T ss_pred HhCCCCCEEEEE-cCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceECCCCEEEccccc--
Confidence 567899999999 55699999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhcc
Q psy15977 82 GDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSY 151 (152)
Q Consensus 82 ~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~ 151 (152)
++|+|++||++||++|+++|.+|++++|+|.+||++ |++|+++|+++|++|++++|.
T Consensus 94 -----------~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~--~~~d~~~f~~~ar~~~~~ya~ 150 (151)
T 4gpr_A 94 -----------DQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANV--LRANKKQFEDTAREWTRMYAR 150 (151)
T ss_dssp -----------TTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHH--HHHCHHHHHHHHHHHHHHHCC
T ss_pred -----------CCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHH--HHHCHHHHHHHHHHHHHHhcC
Confidence 789999999999999999999999999999999999 999999999999999999984
No 6
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=9.8e-47 Score=281.86 Aligned_cols=133 Identities=35% Similarity=0.743 Sum_probs=128.5
Q ss_pred CCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCCC
Q psy15977 2 NKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEP 81 (152)
Q Consensus 2 ~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~ 81 (152)
++++++||++.+ +++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|.||+++|.
T Consensus 34 ~~~~~~gi~~~~-~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~G~ICL~iL~-- 110 (166)
T 2ayv_A 34 SKDPPTNCSAGP-VGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAICLDILK-- 110 (166)
T ss_dssp HHSCCTTEEEEE-CSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCTTCBBCCGGGT--
T ss_pred HhCCCCCEEEEE-cCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCCCCCeEEccccc--
Confidence 467899999999 66699999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhc
Q psy15977 82 GDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLS 150 (152)
Q Consensus 82 ~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~ 150 (152)
++|+|++||++||++|++||.+|++++|+|.+||++ |++|+++|+++|+++++++|
T Consensus 111 -----------~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l--~~~d~~~f~~~ar~~~~~~A 166 (166)
T 2ayv_A 111 -----------DQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHL--YKSDRMRYDQTAREWSQKYA 166 (166)
T ss_dssp -----------TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHH--HHHCHHHHHHHHHHHHHHHC
T ss_pred -----------ccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHH--HHHCHHHHHHHHHHHHHHhC
Confidence 789999999999999999999999999999999999 99999999999999999986
No 7
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=3.6e-47 Score=285.67 Aligned_cols=142 Identities=77% Similarity=1.335 Sum_probs=101.3
Q ss_pred CCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCCC
Q psy15977 2 NKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEP 81 (152)
Q Consensus 2 ~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~ 81 (152)
++++++||++.+++++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|+||+++|..+
T Consensus 30 ~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPNV~~~G~IClsiL~~~ 109 (172)
T 2awf_A 30 NKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEP 109 (172)
T ss_dssp HHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTCBBCCGGGSCC
T ss_pred HhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCCCCCCCcEehhhcCCc
Confidence 56789999999977789999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHH-HHHHHHHHH
Q psy15977 82 GDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYH-WVRRKKIFI 145 (152)
Q Consensus 82 ~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~-~f~~~~~~~ 145 (152)
+.++|+++...++|+|++||++||++|++||.+|++++|+|.+||++ |++|++ +|+++||++
T Consensus 110 ~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~--~~~d~~~~f~~~vr~~ 172 (172)
T 2awf_A 110 GEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKE--WREDRNGEFKRKVARC 172 (172)
T ss_dssp ---------CTTSCCTTCCHHHHHHHHHHHHSCC-------------------------------
T ss_pred ccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHH--HHHCcHHHHHHHHHhC
Confidence 77888888888999999999999999999999999999999999999 999999 999999875
No 8
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=3.6e-47 Score=279.58 Aligned_cols=134 Identities=32% Similarity=0.678 Sum_probs=128.8
Q ss_pred CCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCC-CCcEEeccCCC
Q psy15977 2 NKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEK-NGDVCISILHE 80 (152)
Q Consensus 2 ~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~-~G~icl~~l~~ 80 (152)
++++++||++.+.+++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|.
T Consensus 14 ~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~~~G~iCl~iL~- 92 (149)
T 1fxt_A 14 KDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILK- 92 (149)
T ss_dssp HHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCSSSCCBCCHHHH-
T ss_pred HhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcCCCCeEeCCcCC-
Confidence 46788999999966669999999999999999999999999999999999999999999999999998 9999999997
Q ss_pred CCCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhc
Q psy15977 81 PGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLS 150 (152)
Q Consensus 81 ~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~ 150 (152)
++|+|++||++||++|++||.+|++++|+|.+||++ |++|+++|+++|++|++++|
T Consensus 93 ------------~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~--~~~d~~~f~~~a~~~~~~~a 148 (149)
T 1fxt_A 93 ------------NAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQH--YLRDRESFNKTAALWTRLYA 148 (149)
T ss_dssp ------------TSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHH--HHHCSSHHHHHHHHHHHHHC
T ss_pred ------------CCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHH--HHHCHHHHHHHHHHHHHHhc
Confidence 789999999999999999999999999999999999 99999999999999999987
No 9
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=2.6e-46 Score=279.36 Aligned_cols=134 Identities=36% Similarity=0.742 Sum_probs=129.1
Q ss_pred CCCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCC
Q psy15977 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHE 80 (152)
Q Consensus 1 l~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~ 80 (152)
|++++++||++.+ .++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+++|.||+++|+
T Consensus 31 l~~~~~~gi~~~p-~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~~~G~ICl~iL~- 108 (165)
T 2c4o_A 31 LARDPPAQCSAGP-VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR- 108 (165)
T ss_dssp HHSSCCTTEEEEE-SSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCTTCBBCCGGGT-
T ss_pred HHhCCCCCEEEEE-cCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCCCCCeEeehhhc-
Confidence 3578899999999 55699999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhc
Q psy15977 81 PGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLS 150 (152)
Q Consensus 81 ~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~ 150 (152)
++|+|++||++||++|+++|.+|++++|+|.+||++ |++|+++|+++|+++++++|
T Consensus 109 ------------~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~--~~~d~~~y~~~ar~~~~~~a 164 (165)
T 2c4o_A 109 ------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARI--YKTDREKYNRIAREWTQKYA 164 (165)
T ss_dssp ------------TTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHH--HHHCHHHHHHHHHHHHHHTT
T ss_pred ------------CCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999999999999 99999999999999999987
No 10
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=9.1e-47 Score=279.96 Aligned_cols=133 Identities=30% Similarity=0.614 Sum_probs=128.7
Q ss_pred CCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCCC
Q psy15977 2 NKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEP 81 (152)
Q Consensus 2 ~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~ 81 (152)
++++++||++.+ +++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|+||||||+.+|+||+++|.
T Consensus 26 ~~~~~~gi~~~~-~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~-- 102 (158)
T 1zdn_A 26 TADPPDGIKVFP-NEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLK-- 102 (158)
T ss_dssp HHSCCTTEEEEE-CSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBCHHHHT--
T ss_pred HhCCCCCEEEEE-CCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCCCCCCEEehhhcC--
Confidence 467899999999 67799999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhc
Q psy15977 82 GDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLS 150 (152)
Q Consensus 82 ~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~ 150 (152)
++|+|+++|++||++|++||.+|++++|+|.+||++ |++|+++|+++|+++++++|
T Consensus 103 -----------~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~--~~~d~~~f~~~a~~~t~~~A 158 (158)
T 1zdn_A 103 -----------RDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRL--LLENYEEYAARARLLTEIHG 158 (158)
T ss_dssp -----------TTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHH--HHHCHHHHHHHHHHHHHHHC
T ss_pred -----------CCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHH--HHHCHHHHHHHHHHHHHHhC
Confidence 789999999999999999999999999999999999 99999999999999999986
No 11
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=1.8e-46 Score=276.19 Aligned_cols=133 Identities=35% Similarity=0.753 Sum_probs=128.4
Q ss_pred CCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCCC
Q psy15977 2 NKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEP 81 (152)
Q Consensus 2 ~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~ 81 (152)
++++++||++.+ .++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|.||+++|.
T Consensus 17 ~~~~~~~~~~~~-~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~-- 93 (150)
T 1z2u_A 17 GRDPPAQCSAGP-VGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-- 93 (150)
T ss_dssp HHSCCSSEEEEE-ETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGT--
T ss_pred HhCCCCCEEEEE-CCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCCCCCeEeecccc--
Confidence 467899999999 45699999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhc
Q psy15977 82 GDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLS 150 (152)
Q Consensus 82 ~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~ 150 (152)
++|+|++||++||++|++||.+|++++|+|.+||++ |++|+++|+++|+++++++|
T Consensus 94 -----------~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~--~~~~~~~f~~~~~~~~~~~a 149 (150)
T 1z2u_A 94 -----------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARI--YKTDRERYNQLAREWTQKYA 149 (150)
T ss_dssp -----------TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHH--HHHCHHHHHHHHHHHHHHHC
T ss_pred -----------CCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999999999999 99999999999999999987
No 12
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.9e-46 Score=281.03 Aligned_cols=134 Identities=37% Similarity=0.680 Sum_probs=128.9
Q ss_pred CCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCCC
Q psy15977 2 NKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEP 81 (152)
Q Consensus 2 ~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~ 81 (152)
++++++||++.+ .++|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|+||||||+.+|.||+++|.
T Consensus 17 ~~~~~~gi~~~p-~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI~~~G~ICl~iL~-- 93 (169)
T 1ayz_A 17 KEDAPPGVSASP-LPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQ-- 93 (169)
T ss_dssp HHSCCTTEEEEE-ETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBCCGGGT--
T ss_pred HhCCCCCEEEEe-cCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCCCCCCeEeehhhc--
Confidence 567899999999 46699999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhcc
Q psy15977 82 GDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSY 151 (152)
Q Consensus 82 ~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~ 151 (152)
++|+|+++|++||++|++||.+|++++|+|.+||++ |++|+++|+++|++++++++.
T Consensus 94 -----------~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~--~~~d~~~y~~~~r~~~~~~a~ 150 (169)
T 1ayz_A 94 -----------NRWTPTYDVASILTSIQSLFNDPNPASPANVEAATL--FKDHKSQYVKRVKETVEKSWE 150 (169)
T ss_dssp -----------TTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHH--HHHCHHHHHHHHHHHHHHHHH
T ss_pred -----------cCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHH--HHHCHHHHHHHHHHHHHHHcC
Confidence 789999999999999999999999999999999999 999999999999999999874
No 13
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=3e-46 Score=275.50 Aligned_cols=134 Identities=38% Similarity=0.730 Sum_probs=128.9
Q ss_pred CCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCCC
Q psy15977 2 NKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEP 81 (152)
Q Consensus 2 ~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~ 81 (152)
++++++||++.+ .++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|.||+++|.
T Consensus 17 ~~~~~~~i~~~~-~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~-- 93 (152)
T 2aak_A 17 QQDPPAGISGAP-QDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-- 93 (152)
T ss_dssp HHSCCTTEEEEE-ETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBCCGGGT--
T ss_pred HhCCCCCEEEEe-CCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCCCCCCEEechhhc--
Confidence 467889999999 56699999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhcc
Q psy15977 82 GDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSY 151 (152)
Q Consensus 82 ~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~ 151 (152)
++|+|+++|++||++|+++|.+|++++|+|.+||++ |++|+++|+++|+++++++|.
T Consensus 94 -----------~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~--~~~~~~~y~~~~~~~~~~~a~ 150 (152)
T 2aak_A 94 -----------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM--YSESKREYNRRVRDVVEQSWT 150 (152)
T ss_dssp -----------TSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHH--HHHCHHHHHHHHHHHHHHHCC
T ss_pred -----------CCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHH--HHHCHHHHHHHHHHHHHHHcc
Confidence 789999999999999999999999999999999999 999999999999999999875
No 14
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=3.4e-46 Score=276.34 Aligned_cols=134 Identities=35% Similarity=0.629 Sum_probs=128.0
Q ss_pred CCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCCC
Q psy15977 2 NKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEP 81 (152)
Q Consensus 2 ~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~ 81 (152)
++++++||++.+ +++|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++|||||+.+|.||+++|.
T Consensus 22 ~~~~~~~i~~~p-~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~-- 98 (156)
T 2e2c_A 22 LMSGDPGITAFP-DGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILK-- 98 (156)
T ss_dssp HHHCCTTEEEEE-SSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGT--
T ss_pred HhCCCCCEEEEE-CCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCccCceEECcccc--
Confidence 456889999999 56699999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhccC
Q psy15977 82 GDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSYG 152 (152)
Q Consensus 82 ~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~~ 152 (152)
++|+|++||++||++|++||.+|++++|+|.+||++ | +|+++|+++|++++++++.+
T Consensus 99 -----------~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~--~-~d~~~y~~~~~~~~~~~~~~ 155 (156)
T 2e2c_A 99 -----------ENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADM--W-SNQTEYKKVLHEKYKTAQSD 155 (156)
T ss_dssp -----------TTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHH--T-TCHHHHHHHHHHHHHHHHHC
T ss_pred -----------ccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH--h-cCHHHHHHHHHHHHHHhccC
Confidence 789999999999999999999999999999999999 9 89999999999999998864
No 15
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=1.9e-46 Score=277.41 Aligned_cols=134 Identities=32% Similarity=0.654 Sum_probs=129.0
Q ss_pred CCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCCC
Q psy15977 2 NKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEP 81 (152)
Q Consensus 2 ~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~ 81 (152)
++++++||++.+ +++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|+||||||+.+|.||+++|.
T Consensus 18 ~~~~~~~i~~~~-~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~-- 94 (155)
T 1jat_A 18 VSDPVPGITAEP-HDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLK-- 94 (155)
T ss_dssp HHSCCTTEEEEE-ETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCCBCCGGGT--
T ss_pred HhCCCCCEEEEE-CCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCCCCCEEEchhhc--
Confidence 467899999999 55699999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhcc
Q psy15977 82 GDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSY 151 (152)
Q Consensus 82 ~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~ 151 (152)
++|+|+++|++||++|++||.+|++++|+|.+||++ |++|+++|+++|+++++++|.
T Consensus 95 -----------~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~--~~~~~~~f~~~~r~~~~~~a~ 151 (155)
T 1jat_A 95 -----------TNWSPALQIRTVLLSIQALLASPNPNDPLANDVAED--WIKNEQGAKAKAREWTKLYAK 151 (155)
T ss_dssp -----------TTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHH--HHHCHHHHHHHHHHHHHHHSE
T ss_pred -----------cCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHH--HHHCHHHHHHHHHHHHHHhcc
Confidence 789999999999999999999999999999999999 999999999999999999985
No 16
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=3e-46 Score=283.12 Aligned_cols=148 Identities=51% Similarity=0.882 Sum_probs=128.0
Q ss_pred CCCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCC
Q psy15977 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHE 80 (152)
Q Consensus 1 l~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~ 80 (152)
|++++++||++.+.+++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+++|+||+++|..
T Consensus 19 l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~iClsiL~~ 98 (183)
T 3rz3_A 19 LQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHP 98 (183)
T ss_dssp HHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTTBCTTSBBCCTTC--
T ss_pred HHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCCCCCCCcEehhhcCc
Confidence 35678999999966888999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHh------hHHHHHHHHHHHHHHhc
Q psy15977 81 PGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSE------NYHWVRRKKIFIKSMLS 150 (152)
Q Consensus 81 ~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~------~~~~f~~~~~~~~~~~~ 150 (152)
++++.++++...++|+|++||++||++|++||.+|++++|+|.+||++ |++ |+++|+++|++++++..
T Consensus 99 ~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~--~~~~~~~~~~~~~y~~~v~~~v~~s~ 172 (183)
T 3rz3_A 99 PVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVM--YRKWKESKGKDREYTDIIRKQVLGTK 172 (183)
T ss_dssp ------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHH--HHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHH--HHhcccccccHHHHHHHHHHHHHHHH
Confidence 888888888888999999999999999999999999999999999999 988 67899999999998864
No 17
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=9.7e-46 Score=277.15 Aligned_cols=138 Identities=27% Similarity=0.547 Sum_probs=130.0
Q ss_pred CCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCCC
Q psy15977 2 NKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEP 81 (152)
Q Consensus 2 ~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~ 81 (152)
++++++||++.+ +++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|.||+++|+.+
T Consensus 17 ~~~~~~gi~~~~-~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~~G~iCl~iL~~~ 95 (169)
T 1yh2_A 17 ATEPPPGITCWQ-DKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLP 95 (169)
T ss_dssp HHSCCTTEEEEE-SSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGSCT
T ss_pred HhCCCCCEEEEe-CCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCCcCCeEecccccCC
Confidence 467899999998 6679999999999999999999999999999999999999999999999999999999999999631
Q ss_pred CCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhcc
Q psy15977 82 GDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSY 151 (152)
Q Consensus 82 ~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~ 151 (152)
..++|+|++||++||++|++||.+|++++|+|.+||++ |++|+++|.++|++++.++|.
T Consensus 96 ---------~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~--~~~~~~~y~~~~r~~~~~~a~ 154 (169)
T 1yh2_A 96 ---------PKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSE--FKYNKPAFLKNARQWTEKHAR 154 (169)
T ss_dssp ---------TTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHH--HHHCHHHHHHHHHHHHHHHSC
T ss_pred ---------cccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHH--HHhhHHHHHHHHHHHHHHHcc
Confidence 12679999999999999999999999999999999999 999999999999999999985
No 18
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=7.5e-46 Score=276.35 Aligned_cols=137 Identities=36% Similarity=0.647 Sum_probs=129.2
Q ss_pred CCCCCCCCeEEEecCCC----CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEec
Q psy15977 1 LNKNPVEGFSAGLVDDS----DIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCIS 76 (152)
Q Consensus 1 l~~~p~~g~~~~p~~~~----n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~ 76 (152)
|++++++||++.|.+++ |+++|+++|.||+||||+||+|++.|.||++||++||+|+|.|+||||||+++|+||++
T Consensus 22 l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i~HPnV~~~G~iCl~ 101 (163)
T 3rcz_B 22 WRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLS 101 (163)
T ss_dssp HHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCTTSBBCCG
T ss_pred HHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCCccCCCCCCCcEecc
Confidence 35789999999996442 89999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhc
Q psy15977 77 ILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLS 150 (152)
Q Consensus 77 ~l~~~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~ 150 (152)
+|.. .++|+|++||++||++|++||.+|++++|+|.+||++ |++|+++|+++|+++++++|
T Consensus 102 iL~~-----------~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~--~~~d~~~y~~~~r~~~~~ya 162 (163)
T 3rcz_B 102 ILNE-----------EEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTM--FKKDKVEYEKRVRAQARENA 162 (163)
T ss_dssp GGCT-----------TTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHH--HHHCHHHHHHHHHHHHHHTC
T ss_pred ccCC-----------CCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHH--HHHCHHHHHHHHHHHHHHhC
Confidence 9973 2469999999999999999999999999999999999 99999999999999999987
No 19
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=1.3e-45 Score=273.57 Aligned_cols=137 Identities=36% Similarity=0.609 Sum_probs=128.9
Q ss_pred CCCCCCCeEEEecCC----CCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEecc
Q psy15977 2 NKNPVEGFSAGLVDD----SDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISI 77 (152)
Q Consensus 2 ~~~p~~g~~~~p~~~----~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~ 77 (152)
++++++||++.|..+ +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|.||+++
T Consensus 17 ~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~i 96 (157)
T 2gjd_A 17 RKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSI 96 (157)
T ss_dssp HHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCCCTTBCTTSBBCCGG
T ss_pred HhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCccCCCCCCCcEeeec
Confidence 567899999999542 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhcc
Q psy15977 78 LHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSY 151 (152)
Q Consensus 78 l~~~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~ 151 (152)
|.. .++|+|++||++||++|+++|.+|++++|+|.+||++ |++|+++|+++|+++++++|.
T Consensus 97 L~~-----------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~--~~~~~~~y~~~~~~~~~~~a~ 157 (157)
T 2gjd_A 97 LNE-----------DQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRS--FSRNKAEYDKKVLLQAKQYSK 157 (157)
T ss_dssp GCT-----------TTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHH--HHHCHHHHHHHHHHHHHHTBC
T ss_pred ccC-----------CCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHH--HHHCHHHHHHHHHHHHHHhcC
Confidence 973 1379999999999999999999999999999999999 999999999999999999873
No 20
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=3.4e-45 Score=271.70 Aligned_cols=132 Identities=30% Similarity=0.648 Sum_probs=127.0
Q ss_pred CCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCC-CCcEEeccCCCCCC
Q psy15977 5 PVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEK-NGDVCISILHEPGD 83 (152)
Q Consensus 5 p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~-~G~icl~~l~~~~~ 83 (152)
++.||++.+ .++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|.
T Consensus 27 ~~~~i~~~~-~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~~~G~iCl~iL~---- 101 (159)
T 2bep_A 27 SKNQIKVDL-VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK---- 101 (159)
T ss_dssp HTTSEEEEE-CSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCGGGT----
T ss_pred CCCCEEEEe-CCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCCccCCCCCCCEEeChhhh----
Confidence 578999999 5569999999999999999999999999999999999999999999999999995 9999999997
Q ss_pred CCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhccC
Q psy15977 84 DKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSYG 152 (152)
Q Consensus 84 ~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~~ 152 (152)
++|+|++||++||++|++||.+|++++|+|.+||++ |++|+++|+++|++|++++|.|
T Consensus 102 ---------~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~--~~~~~~~f~~~a~~~~~~~a~~ 159 (159)
T 2bep_A 102 ---------DQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQ--YKQNPEMFKQTARLWAHVYAGA 159 (159)
T ss_dssp ---------TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHH--HHHCHHHHHHHHHHHHHHHSCC
T ss_pred ---------ccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHH--HHHCHHHHHHHHHHHHHHhhcC
Confidence 789999999999999999999999999999999999 9999999999999999999976
No 21
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=3.3e-45 Score=279.64 Aligned_cols=133 Identities=35% Similarity=0.651 Sum_probs=128.5
Q ss_pred CCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCCC
Q psy15977 2 NKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEP 81 (152)
Q Consensus 2 ~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~ 81 (152)
++++++||++.+ .++|+++|+++|.||+||||+||+|++.|.||++||++||+|+|.|+||||||+.+|.|||++|.
T Consensus 61 ~~~~~~gi~~~p-~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~G~ICL~iL~-- 137 (194)
T 3bzh_A 61 TLDPPPNCSAGP-KGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILK-- 137 (194)
T ss_dssp HHSCCTTEEEEE-SSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTCBBCCGGGT--
T ss_pred HhCCCCCceeec-ccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceECCCCceechhhh--
Confidence 467899999999 56699999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhc
Q psy15977 82 GDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLS 150 (152)
Q Consensus 82 ~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~ 150 (152)
++|+|+++|.+||++|++||.+|++++|+|.+||++ |++|+++|+++|++|+.++|
T Consensus 138 -----------~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l--~~~d~~~f~~~ar~~t~~ya 193 (194)
T 3bzh_A 138 -----------DNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQ--YMTNRAEHDRMARQWTKRYA 193 (194)
T ss_dssp -----------TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHH--HHHCHHHHHHHHHHHHHHHC
T ss_pred -----------ccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHH--HHHCHHHHHHHHHHHHHHhh
Confidence 789999999999999999999999999999999999 99999999999999999987
No 22
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.6e-45 Score=278.16 Aligned_cols=134 Identities=33% Similarity=0.536 Sum_probs=127.4
Q ss_pred CCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCCC
Q psy15977 2 NKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEP 81 (152)
Q Consensus 2 ~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~ 81 (152)
++++++||++.+ +++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|+||||||+.+|+||+++|.
T Consensus 43 ~~~~~~gi~~~p-~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~G~ICL~iL~-- 119 (179)
T 1i7k_A 43 MMSGDKGISAFP-ESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILK-- 119 (179)
T ss_dssp HHHCCTTEEEEE-ETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCTTCBBCCGGGT--
T ss_pred HhCCCCCEEEEE-cCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCccccCCeEEcccCc--
Confidence 456889999999 56699999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhccC
Q psy15977 82 GDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSYG 152 (152)
Q Consensus 82 ~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~~ 152 (152)
++|+|+++|++||++|++||.+|++++|+|.+||++ | +|+++|+++|++++++++-|
T Consensus 120 -----------~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l--~-~d~~~f~~~v~~~v~~~~~~ 176 (179)
T 1i7k_A 120 -----------EKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAEL--W-KNPTAFKKYLQETYSKQVTS 176 (179)
T ss_dssp -----------TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHH--T-TSHHHHHHHHHHHHHTTCC-
T ss_pred -----------CcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHH--h-hCHHHHHHHHHHHHHHHhcc
Confidence 789999999999999999999999999999999999 9 99999999999999988754
No 23
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=3.5e-45 Score=279.23 Aligned_cols=130 Identities=40% Similarity=0.757 Sum_probs=123.8
Q ss_pred CCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccC-CCCcEEeccCCCCCCCC
Q psy15977 7 EGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIE-KNGDVCISILHEPGDDK 85 (152)
Q Consensus 7 ~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~-~~G~icl~~l~~~~~~~ 85 (152)
.||++.+. ++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+ .+|.||+++|.
T Consensus 63 ~gi~v~~~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~------ 135 (193)
T 2f4z_A 63 HGVSAQIV-GGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILK------ 135 (193)
T ss_dssp -CEEEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCCGGGT------
T ss_pred CcEEEEEc-CCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeEEEecCCccCCCcCCCCEEECcccc------
Confidence 79999994 56999999999999999999999999999999999999999999999999999 58999999997
Q ss_pred cccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhccC
Q psy15977 86 YGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSYG 152 (152)
Q Consensus 86 ~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~~ 152 (152)
++|+|++||++||++|++||.+|++++|+|.+||++ |++|+++|+++|++|++++|.+
T Consensus 136 -------~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l--~~~d~~~f~~~ar~~t~~ya~~ 193 (193)
T 2f4z_A 136 -------HEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKM--MIENHPLFVQTAKLWTETFAKE 193 (193)
T ss_dssp -------TTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHH--HHHCHHHHHHHHHHHHHHHCC-
T ss_pred -------ccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHH--HHHCHHHHHHHHHHHHHHHccC
Confidence 679999999999999999999999999999999999 9999999999999999999853
No 24
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=3.7e-45 Score=272.02 Aligned_cols=138 Identities=33% Similarity=0.579 Sum_probs=129.2
Q ss_pred CCCCCCCeEEEecC----CCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEecc
Q psy15977 2 NKNPVEGFSAGLVD----DSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISI 77 (152)
Q Consensus 2 ~~~p~~g~~~~p~~----~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~ 77 (152)
++++++||.+.+.. ++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|.||+++
T Consensus 20 ~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~i 99 (161)
T 2grr_A 20 RKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99 (161)
T ss_dssp HHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCSTTBCTTSBBCCGG
T ss_pred HhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecCcccCCCCCCCeEeehh
Confidence 56788999999853 36899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhccC
Q psy15977 78 LHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSYG 152 (152)
Q Consensus 78 l~~~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~~ 152 (152)
|.. .++|+|+++|++||++|++||.+|++++|+|.+||++ |++|+++|+++|+++++++|.+
T Consensus 100 L~~-----------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~--~~~~~~~y~~~~~~~~~~~a~~ 161 (161)
T 2grr_A 100 LEE-----------DKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTI--YCQNRVEYEKRVRAQAKKFAPS 161 (161)
T ss_dssp GCT-----------TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHH--HHHCHHHHHHHHHHHHHHTCC-
T ss_pred cCC-----------CCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHH--HHHCHHHHHHHHHHHHHHHhcC
Confidence 972 1479999999999999999999999999999999999 9999999999999999999853
No 25
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=2.3e-45 Score=284.47 Aligned_cols=134 Identities=34% Similarity=0.743 Sum_probs=128.3
Q ss_pred CCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCC-CCcEEeccCCC
Q psy15977 2 NKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEK-NGDVCISILHE 80 (152)
Q Consensus 2 ~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~-~G~icl~~l~~ 80 (152)
++++++||++.+ .++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|.
T Consensus 36 ~~~~~~gi~~~p-~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~- 113 (216)
T 2pwq_A 36 ENENVQEIDAHI-KDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLK- 113 (216)
T ss_dssp HHSCTTTEEEEE-CSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCHHHH-
T ss_pred HhCCCCCEEEEE-cCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCCcCCCCEEEchhhc-
Confidence 467889999999 5569999999999999999999999999999999999999999999999999994 8999999997
Q ss_pred CCCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhcc
Q psy15977 81 PGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSY 151 (152)
Q Consensus 81 ~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~ 151 (152)
++|+|++||++||++|++||.+|++++|+|.+||++ |++|+++|+++|++|++++|.
T Consensus 114 ------------~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~--~~~d~~~f~~~ar~~t~~ya~ 170 (216)
T 2pwq_A 114 ------------NEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKM--YKENHALFVKTASVWTKTFAT 170 (216)
T ss_dssp ------------HHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHH--HHHCHHHHHHHHHHHHHHHSC
T ss_pred ------------ccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHH--HHHCHHHHHHHHHHHHHHhcC
Confidence 679999999999999999999999999999999999 999999999999999999985
No 26
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=7.9e-45 Score=271.61 Aligned_cols=141 Identities=27% Similarity=0.488 Sum_probs=130.6
Q ss_pred CCCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCC
Q psy15977 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHE 80 (152)
Q Consensus 1 l~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~ 80 (152)
|++++++||++.+.+++|++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|.||+++|..
T Consensus 26 l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~iL~~ 104 (167)
T 3fn1_B 26 LEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLRE 104 (167)
T ss_dssp HGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSBCTTCCBCCGGGSB
T ss_pred HHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCCCCCCEEechhhcc
Confidence 46788999999987778999999998 89999999999999999999999999999999999999999999999999974
Q ss_pred CCCCCcccccccCCCCCcCCHHHHHHHHHHhhCC-CCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhcc
Q psy15977 81 PGDDKYGYERAYERWLPVHTVETILISVISMLAD-PNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSY 151 (152)
Q Consensus 81 ~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~-p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~ 151 (152)
++ ..+++|+|++||++||++|++||.+ |++++|+|.+||++ |++|+++|+++|+++++++|.
T Consensus 105 ~~-------~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~--~~~~~~~f~~~~r~~~~~~A~ 167 (167)
T 3fn1_B 105 HS-------IDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEH--HLRDKEDFRNKVDDYIKRYAR 167 (167)
T ss_dssp CS-------SSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHH--HHHCHHHHHHHHHHHHHHHCC
T ss_pred CC-------CCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHH--HHHCHHHHHHHHHHHHHHhcC
Confidence 21 1235899999999999999999999 79999999999999 999999999999999999874
No 27
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=1.3e-45 Score=285.69 Aligned_cols=136 Identities=32% Similarity=0.668 Sum_probs=130.1
Q ss_pred CCCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCC-CCcEEeccCC
Q psy15977 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEK-NGDVCISILH 79 (152)
Q Consensus 1 l~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~-~G~icl~~l~ 79 (152)
|++++++||++.+.+++++++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||++ +|.||+++|.
T Consensus 14 l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~ 93 (215)
T 1tte_A 14 VKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILR 93 (215)
T ss_dssp HHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSCSSSSCCCSSTTT
T ss_pred HHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCcCCCCEEECccCC
Confidence 357899999999976667789999999999999999999999999999999999999999999999999 9999999997
Q ss_pred CCCCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhcc
Q psy15977 80 EPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSY 151 (152)
Q Consensus 80 ~~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~ 151 (152)
++|+|++||++||++|++||.+|++++|+|.+||++ |++|+++|.++|++|++++|.
T Consensus 94 -------------~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~--~~~d~~~f~~~ar~~t~~yA~ 150 (215)
T 1tte_A 94 -------------NAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQH--YLRDRESFNKTAALWTRLYAS 150 (215)
T ss_dssp -------------CCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHH--HHHCHHHHHHHHHHHHHHSSC
T ss_pred -------------CCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHH--HHHCHHHHHHHHHHHHHHhcc
Confidence 789999999999999999999999999999999999 999999999999999999985
No 28
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=8.7e-45 Score=268.43 Aligned_cols=134 Identities=28% Similarity=0.605 Sum_probs=127.5
Q ss_pred CCCCCCCeEE-EecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCC
Q psy15977 2 NKNPVEGFSA-GLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHE 80 (152)
Q Consensus 2 ~~~p~~g~~~-~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~ 80 (152)
++++++||++ .+ +++|+++|+++|. |++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|.||+++|..
T Consensus 17 ~~~~~~~i~~~~~-~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~iCl~iL~~ 94 (155)
T 1wzv_A 17 QKKPPPYLRNLSS-DDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISS 94 (155)
T ss_dssp HHSCCTTEEEEEE-CSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBCCCGGGCT
T ss_pred HhCCCCCEEEEec-CCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCCCCCeEeecCCCc
Confidence 4678899999 55 7789999999999 9999999999999999999999999999999999999999999999999931
Q ss_pred CCCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhcc
Q psy15977 81 PGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSY 151 (152)
Q Consensus 81 ~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~ 151 (152)
++|+|+++|++||++|++||.+|++++|+|.+||++ |++|+++|+++|+++++++|.
T Consensus 95 ------------~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~--~~~~~~~y~~~~r~~~~~~a~ 151 (155)
T 1wzv_A 95 ------------ENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADL--LTQNPELFRKNAEEFTLRFGV 151 (155)
T ss_dssp ------------TTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHH--HHHCHHHHHHHHHHHHHHHCE
T ss_pred ------------cCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHH--HHHHHHHHHHHHHHHHHHhcc
Confidence 789999999999999999999999999999999999 999999999999999999874
No 29
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=3.2e-44 Score=275.52 Aligned_cols=132 Identities=30% Similarity=0.648 Sum_probs=126.3
Q ss_pred CCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCC-CCcEEeccCCCCCC
Q psy15977 5 PVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEK-NGDVCISILHEPGD 83 (152)
Q Consensus 5 p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~-~G~icl~~l~~~~~ 83 (152)
++.||++.+ .++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||++ +|.||+++|.
T Consensus 24 ~~~~i~~~~-~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~~G~iCl~iL~---- 98 (201)
T 3k9o_A 24 SKNQIKVDL-VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK---- 98 (201)
T ss_dssp HTTSEEEEE-CSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCCGGGT----
T ss_pred CCCCEEEEE-CCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcccCCCcCCCCeeeCcccc----
Confidence 368999999 4569999999999999999999999999999999999999999999999999995 9999999997
Q ss_pred CCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhccC
Q psy15977 84 DKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSYG 152 (152)
Q Consensus 84 ~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~~ 152 (152)
++|+|++||++||++|++||.+|++++|+|.+||++ |++|+++|.++|++|++++|.+
T Consensus 99 ---------~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~--~~~~~~~f~~~a~~~~~~~a~~ 156 (201)
T 3k9o_A 99 ---------DQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQ--YKQNPEMFKQTARLWAHVYAGA 156 (201)
T ss_dssp ---------TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHH--HHHCHHHHHHHHHHHHHHHHCC
T ss_pred ---------cCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHH--HHHCHHHHHHHHHHHHHHhccc
Confidence 789999999999999999999999999999999999 9999999999999999999853
No 30
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=1.2e-44 Score=267.41 Aligned_cols=136 Identities=30% Similarity=0.676 Sum_probs=128.1
Q ss_pred CCCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCC
Q psy15977 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHE 80 (152)
Q Consensus 1 l~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~ 80 (152)
|++++++|+.+.+.+++|+++|+++|. |++|||+||+|+++|.||++||++||+|+|.|+||||||+++|.||+++|..
T Consensus 14 l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~ 92 (154)
T 1c4z_D 14 IRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISA 92 (154)
T ss_dssp CSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTCBBCCTTTSS
T ss_pred HHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCCCCEEECCCCCC
Confidence 567889999987767889999999998 9999999999999999999999999999999999999999999999999953
Q ss_pred CCCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhcc
Q psy15977 81 PGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSY 151 (152)
Q Consensus 81 ~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~ 151 (152)
++|+|++||++||++|++||.+|++++|+|.+||++ |++|+++|+++|+++++++|.
T Consensus 93 ------------~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~--~~~~~~~f~~~~~~~~~~~a~ 149 (154)
T 1c4z_D 93 ------------ENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEE--YSKDRKKFCKNAEEFTKKYGE 149 (154)
T ss_dssp ------------SSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHH--HHTCSSTTHHHHHHHHTTC--
T ss_pred ------------CCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHH--HHHhHHHHHHHHHHHHHHhcc
Confidence 689999999999999999999999999999999999 999999999999999999874
No 31
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.9e-44 Score=269.14 Aligned_cols=132 Identities=31% Similarity=0.569 Sum_probs=122.8
Q ss_pred CCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCcc-CCCCcEEeccCCC
Q psy15977 2 NKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNI-EKNGDVCISILHE 80 (152)
Q Consensus 2 ~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni-~~~G~icl~~l~~ 80 (152)
++++++||++.+ .++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||||| +.+|.||+++|+.
T Consensus 36 ~~~~~~gi~~~p-~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~ 114 (169)
T 1yrv_A 36 KENNYKGITAKP-VSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDN 114 (169)
T ss_dssp HHHCCTTEEEEE-CSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCTTTCCBCCHHHHC
T ss_pred HhCCCCCEEEEE-cCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCcccCCCCeEeehhhcC
Confidence 456889999999 56699999999999999999999999999999999999999999999999999 7899999999961
Q ss_pred CCCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHH
Q psy15977 81 PGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSM 148 (152)
Q Consensus 81 ~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~ 148 (152)
.++|+|++||++||++|++||.+|++++|+|.+||++ |++|+++|+++ ++++++
T Consensus 115 -----------~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l--~~~d~~~y~~~-~~~v~~ 168 (169)
T 1yrv_A 115 -----------PEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARI--LVKDESLYRTI-LRLFNR 168 (169)
T ss_dssp -----------GGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHH--HHSCHHHHHHH-HHHHC-
T ss_pred -----------CcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHH--HHHCHHHHHHH-HHHhhC
Confidence 2679999999999999999999999999999999999 99999999998 877653
No 32
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.8e-43 Score=261.74 Aligned_cols=129 Identities=29% Similarity=0.549 Sum_probs=123.0
Q ss_pred CCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCCCCC
Q psy15977 4 NPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEPGD 83 (152)
Q Consensus 4 ~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~~~ 83 (152)
++++|+++...+++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|.||+++|.
T Consensus 19 ~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~---- 93 (160)
T 1y8x_A 19 NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILR---- 93 (160)
T ss_dssp CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCBBCCGGGT----
T ss_pred CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcCCCCCeEEcccch----
Confidence 46789999833677999999998 9999999999999999999999999999999999999999999999999997
Q ss_pred CCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHH
Q psy15977 84 DKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSM 148 (152)
Q Consensus 84 ~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~ 148 (152)
++|+|++||++||++|++||.+|++++|+|.+||++ |++|+++|+++|+++++.
T Consensus 94 ---------~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~--~~~~~~~f~~~v~~~v~~ 147 (160)
T 1y8x_A 94 ---------EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEV--LQNNRRLFEQNVQRSMRG 147 (160)
T ss_dssp ---------TTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHH--HHSCHHHHHHHHHHHHHS
T ss_pred ---------hhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHH--HHHCHHHHHHHHHHHHhh
Confidence 789999999999999999999999999999999999 999999999999999875
No 33
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=5.1e-43 Score=276.79 Aligned_cols=132 Identities=30% Similarity=0.648 Sum_probs=126.4
Q ss_pred CCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCC-CCcEEeccCCCCCC
Q psy15977 5 PVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEK-NGDVCISILHEPGD 83 (152)
Q Consensus 5 p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~-~G~icl~~l~~~~~ 83 (152)
++.||++.+ .++|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|+||||||+. +|.||+++|.
T Consensus 76 ~~~gi~v~p-~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~~G~ICL~iL~---- 150 (253)
T 3e46_A 76 SKNQIKVDL-VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK---- 150 (253)
T ss_dssp HTTSEEEEE-CSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCGGGT----
T ss_pred CCCCEEEEE-CCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCccCCccCCCCeeeccccc----
Confidence 468999999 4569999999999999999999999999999999999999999999999999995 9999999997
Q ss_pred CCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhccC
Q psy15977 84 DKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSYG 152 (152)
Q Consensus 84 ~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~~ 152 (152)
++|+|++||++||++|++||.+|++++|+|.+||++ |++|+++|+++|++|++++|.+
T Consensus 151 ---------~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l--~~~d~~~f~~~ar~~t~~yA~~ 208 (253)
T 3e46_A 151 ---------DQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQ--YKQNPEMFKQTARLWAHVYAGA 208 (253)
T ss_dssp ---------TCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHH--HHHCHHHHHHHHHHHHHHHHCC
T ss_pred ---------CCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHH--HHHCHHHHHHHHHHHHHHhccc
Confidence 789999999999999999999999999999999999 9999999999999999999853
No 34
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=1.1e-43 Score=261.95 Aligned_cols=129 Identities=26% Similarity=0.613 Sum_probs=122.8
Q ss_pred CCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCC-CCcEEeccCCCCCCCC
Q psy15977 7 EGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEK-NGDVCISILHEPGDDK 85 (152)
Q Consensus 7 ~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~-~G~icl~~l~~~~~~~ 85 (152)
.|+++.+. ++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|.
T Consensus 17 ~~~~v~~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~G~iCl~il~------ 89 (152)
T 2onu_A 17 AGYDLELN-NGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVIN------ 89 (152)
T ss_dssp HTCCEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTTCBBCHHHHH------
T ss_pred CCCEEEEc-cCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCcCCeEeccccc------
Confidence 37888884 569999999999999999999999999999999999999999999999999995 9999999997
Q ss_pred cccccccCCCCCcCCHHHHHHH-HHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhcc
Q psy15977 86 YGYERAYERWLPVHTVETILIS-VISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSY 151 (152)
Q Consensus 86 ~~~~~~~~~W~p~~ti~~iL~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~ 151 (152)
++|+|+++|++||++ |++||.+|++++|+|.+||++ |++|+++|+++|+++++++|.
T Consensus 90 -------~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~--~~~d~~~y~~~v~~~~~~~a~ 147 (152)
T 2onu_A 90 -------QTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASL--LMKDKNIYEEKVKEYVKLYAS 147 (152)
T ss_dssp -------HHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHH--HHHCHHHHHHHHHHHHHHHSC
T ss_pred -------ccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHH--HHHCHHHHHHHHHHHHHHhcc
Confidence 789999999999999 689999999999999999999 999999999999999999884
No 35
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=6.2e-43 Score=264.30 Aligned_cols=130 Identities=28% Similarity=0.505 Sum_probs=123.6
Q ss_pred CCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCCCCC
Q psy15977 4 NPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEPGD 83 (152)
Q Consensus 4 ~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~~~ 83 (152)
++++|+++...+++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|.||+++|.
T Consensus 39 ~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNV~~~G~iCl~iL~---- 113 (180)
T 2nvu_C 39 NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILR---- 113 (180)
T ss_dssp CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTSBBCCGGGT----
T ss_pred CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCCCCCCCcEEccccc----
Confidence 46789999843778999999998 9999999999999999999999999999999999999999999999999997
Q ss_pred CCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHh
Q psy15977 84 DKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSML 149 (152)
Q Consensus 84 ~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~ 149 (152)
++|+|++||++||++|++||.+|++++|+|.+||++ |++|+++|+++|+++++.-
T Consensus 114 ---------~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~--~~~d~~~f~~~v~~~v~~~ 168 (180)
T 2nvu_C 114 ---------EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEV--LQNNRRLFEQNVQRSMRGG 168 (180)
T ss_dssp ---------TSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHH--HHHCHHHHHHHHHHHHHSE
T ss_pred ---------ccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHH--HHHCHHHHHHHHHHHHhhC
Confidence 789999999999999999999999999999999999 9999999999999998753
No 36
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=1.8e-42 Score=260.09 Aligned_cols=129 Identities=30% Similarity=0.574 Sum_probs=122.2
Q ss_pred CeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEec-ccccCccC-CCCcEEeccCCCCCCCC
Q psy15977 8 GFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT-EIWHPNIE-KNGDVCISILHEPGDDK 85 (152)
Q Consensus 8 g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t-~i~HPni~-~~G~icl~~l~~~~~~~ 85 (152)
++.+.+++++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.| +||||||+ .+|.||+++|..
T Consensus 36 ~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~~i~HPni~~~~G~iCl~iL~~----- 110 (172)
T 2y9m_A 36 IESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKP----- 110 (172)
T ss_dssp EEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECTTSCCCTTEETTTTEECCGGGST-----
T ss_pred eEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEEEEeeCCeecCCCcCCCCEEeccccCC-----
Confidence 46777767789999999999999999999999999999999999999999999 99999995 799999999963
Q ss_pred cccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHh-hHHHHHHHHHHHHHHhc
Q psy15977 86 YGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSE-NYHWVRRKKIFIKSMLS 150 (152)
Q Consensus 86 ~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~-~~~~f~~~~~~~~~~~~ 150 (152)
++|+|++||++||++|++||.+|++++|+|.+||++ |++ |+++|+++|++++++.+
T Consensus 111 -------~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~--~~~~d~~~f~~~~~~~~~~~~ 167 (172)
T 2y9m_A 111 -------EEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNI--IRCGDMSAYQGIVKYFLAERE 167 (172)
T ss_dssp -------TTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHH--HTTTCHHHHHHHHHHHHHHHH
T ss_pred -------CCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHH--HHhCCHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999 999 99999999999998875
No 37
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.3e-43 Score=263.91 Aligned_cols=128 Identities=27% Similarity=0.545 Sum_probs=122.8
Q ss_pred CCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCC-CCcEEeccCCCCCCCC
Q psy15977 7 EGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEK-NGDVCISILHEPGDDK 85 (152)
Q Consensus 7 ~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~-~G~icl~~l~~~~~~~ 85 (152)
+|+++.+. +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|+
T Consensus 40 ~g~~v~~~--ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~~~G~ICL~iL~------ 111 (179)
T 2z5d_A 40 SKHEVTIL--GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVIN------ 111 (179)
T ss_dssp SSSCEEEE--EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCHHHHH------
T ss_pred CCCEEEEC--CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCCCCCeEeccccc------
Confidence 58889884 47899999999999999999999999999999999999999999999999998 9999999997
Q ss_pred cccccccCCCCCcCCHHHHHHH-HHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhcc
Q psy15977 86 YGYERAYERWLPVHTVETILIS-VISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSY 151 (152)
Q Consensus 86 ~~~~~~~~~W~p~~ti~~iL~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~ 151 (152)
++|+|+++|++||++ |++||.+|++++|+|.+||++ |++|+++|+++|+++++++|.
T Consensus 112 -------~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~--~~~d~~~y~~~vr~~~~~~a~ 169 (179)
T 2z5d_A 112 -------QTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAM--YLHRPEEYKQKIKEYIQKYAT 169 (179)
T ss_dssp -------HHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHH--HHHCHHHHHHHHHHHHHHHSS
T ss_pred -------cCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHH--HHHCHHHHHHHHHHHHHHHcc
Confidence 789999999999999 999999999999999999999 999999999999999999874
No 38
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=7.1e-42 Score=285.71 Aligned_cols=135 Identities=35% Similarity=0.708 Sum_probs=129.6
Q ss_pred CCCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCC
Q psy15977 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHE 80 (152)
Q Consensus 1 l~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~ 80 (152)
|++++++|+++.| .++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+++|.||+++|.
T Consensus 15 l~~~~~~~~~~~p-~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~il~- 92 (399)
T 4ddg_A 15 LARDPPAQCSAGP-VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILR- 92 (399)
T ss_dssp HHHSCCSSEEEEE-ETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBCTTCBBCCGGGT-
T ss_pred HHhCCCCCEEEEE-cCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccCCCCeEeCcccc-
Confidence 3568899999999 45699999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhcc
Q psy15977 81 PGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSY 151 (152)
Q Consensus 81 ~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~ 151 (152)
++|+|++||++||++|++||.+|++++|+|.+||++ |++|+++|+++|++|++++|-
T Consensus 93 ------------~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~--~~~d~~~y~~~~~~~~~~~a~ 149 (399)
T 4ddg_A 93 ------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARI--YKTDREKYNRIAREWTQKYAM 149 (399)
T ss_dssp ------------TSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHH--HHHCHHHHHHHHHHHHHHHTS
T ss_pred ------------cCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHH--HHHCHHHHHHHHHHHHHHhhc
Confidence 789999999999999999999999999999999999 999999999999999999874
No 39
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=1.8e-41 Score=258.21 Aligned_cols=130 Identities=30% Similarity=0.520 Sum_probs=122.8
Q ss_pred CCCCeEEEe---cCCCCce---eEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccC
Q psy15977 5 PVEGFSAGL---VDDSDIY---KWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISIL 78 (152)
Q Consensus 5 p~~g~~~~p---~~~~n~~---~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l 78 (152)
+++|+++.. .+++|++ +|+++|. |++|||+||+|++.|.||++||++||+|+|.|+||||||+.+|.||+++|
T Consensus 43 ~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~iCl~iL 121 (190)
T 3o2u_A 43 LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNIL 121 (190)
T ss_dssp CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECSCCCCTTBCTTSBBCCGGG
T ss_pred CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEecCcccCCCCCCCeEechhc
Confidence 678999982 3778999 9999997 88899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhc
Q psy15977 79 HEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLS 150 (152)
Q Consensus 79 ~~~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~ 150 (152)
. ++|+|++||++||++|+++|.+|++++|+|.+||++ |++|+++|+++|+++++..+
T Consensus 122 ~-------------~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~--~~~d~~~f~~~ar~~~~~~~ 178 (190)
T 3o2u_A 122 R-------------EDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKL--LCEGEKEFAEAVRLTMSGGS 178 (190)
T ss_dssp T-------------TTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHH--HHTCHHHHHHHHHHHHBTCE
T ss_pred c-------------CCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHH--HHHCHHHHHHHHHHHHHhcC
Confidence 7 789999999999999999999999999999999999 99999999999999986543
No 40
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=1.2e-41 Score=255.40 Aligned_cols=122 Identities=27% Similarity=0.503 Sum_probs=116.9
Q ss_pred CCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCC-CCcEEeccCCCCCCCCcccccccC
Q psy15977 15 DDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEK-NGDVCISILHEPGDDKYGYERAYE 93 (152)
Q Consensus 15 ~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~-~G~icl~~l~~~~~~~~~~~~~~~ 93 (152)
.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|. +
T Consensus 33 ~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~~G~iCl~iL~-------------~ 99 (171)
T 1yf9_A 33 PSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVIN-------------Q 99 (171)
T ss_dssp ECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCHHHHH-------------H
T ss_pred CCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcccCCeEeccccc-------------c
Confidence 3569999999999999999999999999999999999999999999999999995 9999999997 7
Q ss_pred CCCCcCCHHHHHHHH-HHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhcc
Q psy15977 94 RWLPVHTVETILISV-ISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSY 151 (152)
Q Consensus 94 ~W~p~~ti~~iL~~i-~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~ 151 (152)
+|+|+++|++||++| ++||.+|++++|+|.+||++ |++|+++|+++|+++++++|.
T Consensus 100 ~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~--~~~d~~~y~~~vr~~~~~~a~ 156 (171)
T 1yf9_A 100 TWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHL--LHADRVGFDALLREHVSTHAT 156 (171)
T ss_dssp HCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHH--HHHCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHH--HHHCHHHHHHHHHHHHHHHcC
Confidence 899999999999997 79999999999999999999 999999999999999999874
No 41
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=1.8e-39 Score=242.66 Aligned_cols=122 Identities=19% Similarity=0.456 Sum_probs=114.6
Q ss_pred CCCeEEEecCCCCceeEEEEEeCCCCCCCC--CcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCCCCC
Q psy15977 6 VEGFSAGLVDDSDIYKWEVLIIGPPDTMYE--GGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEPGD 83 (152)
Q Consensus 6 ~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~--gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~~~ 83 (152)
+.|+.+.+ +++|+++|+++|.||++|||+ ||.|++.|.||++||++||+|+|.|+||||||+.+|.||+++|.
T Consensus 37 ~~~i~~~~-~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~il~---- 111 (167)
T 4ds2_A 37 HSTAIFSV-DTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVN---- 111 (167)
T ss_dssp SSCEEEEE-EESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCEEEESSCCCCSSCCTTSCCCTHHHH----
T ss_pred CCcEEEEe-CCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCEEEEeCCcccccCCCCCEEEcccCc----
Confidence 67899998 667999999999999999999 99999999999999999999999999999999999999999997
Q ss_pred CCcccccccCCCCCcCCHHHHHH-HHHHhhCC--CCCCCcccHHHHHhhhhHhhHHHHHHHHH
Q psy15977 84 DKYGYERAYERWLPVHTVETILI-SVISMLAD--PNDESPANVDAAVSQYSSENYHWVRRKKI 143 (152)
Q Consensus 84 ~~~~~~~~~~~W~p~~ti~~iL~-~i~~ll~~--p~~~~p~n~~aa~~~~~~~~~~~f~~~~~ 143 (152)
++|+|+++++++|+ .|++|+.+ |++++|+|.|||++ |++|+++|+++||
T Consensus 112 ---------~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l--~~~d~~~f~~~vr 163 (167)
T 4ds2_A 112 ---------DFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHY--LEKFPQDFAARVR 163 (167)
T ss_dssp ---------TTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHH--HHHCHHHHHHHHT
T ss_pred ---------CCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHH--HHHCHHHHHHHHh
Confidence 78999999999754 67778775 89999999999999 9999999999998
No 42
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=1.1e-39 Score=241.51 Aligned_cols=117 Identities=29% Similarity=0.489 Sum_probs=107.0
Q ss_pred CCC-CCCCeEEEecCCC--CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcE---Ee
Q psy15977 2 NKN-PVEGFSAGLVDDS--DIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDV---CI 75 (152)
Q Consensus 2 ~~~-p~~g~~~~p~~~~--n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~i---cl 75 (152)
+++ +++||++.+.+++ |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|+| |+
T Consensus 34 ~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNV~~~G~icisCL 113 (156)
T 2q0v_A 34 QKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNL 113 (156)
T ss_dssp HCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTSBBCGGGS
T ss_pred HhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccccCCCccCCeEehhhc
Confidence 455 7889999996543 59999999999999999999999999999999999999999999999999999999 88
Q ss_pred ccCCCCCCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHhhhhHhh
Q psy15977 76 SILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSEN 134 (152)
Q Consensus 76 ~~l~~~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~ 134 (152)
++|+ +|+|++||++||++|++||.+|++++++|.+||++ |++|
T Consensus 114 ~iL~--------------~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~--y~~n 156 (156)
T 2q0v_A 114 HILK--------------NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEV--YSNN 156 (156)
T ss_dssp HHHH--------------TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCB--C---
T ss_pred cccc--------------CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHH--hhhC
Confidence 8883 59999999999999999999999999999999999 8765
No 43
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=5.8e-39 Score=233.19 Aligned_cols=113 Identities=27% Similarity=0.519 Sum_probs=103.1
Q ss_pred CCC-CCCCeEEEecCCC--CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCC-CcE--Ee
Q psy15977 2 NKN-PVEGFSAGLVDDS--DIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKN-GDV--CI 75 (152)
Q Consensus 2 ~~~-p~~g~~~~p~~~~--n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~-G~i--cl 75 (152)
+++ +++|+++.+.+++ |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+ |+| |+
T Consensus 19 ~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~~G~i~~cL 98 (138)
T 1jat_B 19 EKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDF 98 (138)
T ss_dssp HC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCBBCTTS
T ss_pred HhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccccCCEeCCCCEEeeec
Confidence 455 7889999996543 59999999999999999999999999999999999999999999999999996 999 89
Q ss_pred ccCCCCCCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHh
Q psy15977 76 SILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVS 128 (152)
Q Consensus 76 ~~l~~~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~ 128 (152)
++| ++|+|++||++||++|++||.+|++++++|.+||++
T Consensus 99 ~~l--------------~~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~ 137 (138)
T 1jat_B 99 HTL--------------RDWKRAYTMETLLLDLRKEMATPANKKLRQPKEGET 137 (138)
T ss_dssp HHH--------------HTCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCB
T ss_pred ccC--------------CCCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhc
Confidence 988 469999999999999999999999999999999987
No 44
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=5.3e-38 Score=224.62 Aligned_cols=104 Identities=29% Similarity=0.646 Sum_probs=94.0
Q ss_pred CCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEeccc-ccCccCCCCcEEeccCCC
Q psy15977 2 NKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEI-WHPNIEKNGDVCISILHE 80 (152)
Q Consensus 2 ~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i-~HPni~~~G~icl~~l~~ 80 (152)
++++++|+++.+ +++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ +||||+.+|+||+++|.
T Consensus 19 ~~~~~~~~~~~~-~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~~G~iCl~iL~- 96 (125)
T 2fo3_A 19 LNNPPINCTLDV-HPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLG- 96 (125)
T ss_dssp HHSCCTTEEEEE-CTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCTTSBBCCGGGT-
T ss_pred HhCCCCCEEEEe-CcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcCCCCCEEEchhcC-
Confidence 467889999998 677999999999999999999999999999999999999999999997 99999999999999997
Q ss_pred CCCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCC
Q psy15977 81 PGDDKYGYERAYERWLPVHTVETILISVISMLADPNDES 119 (152)
Q Consensus 81 ~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~ 119 (152)
++|+|++||++||++|++||.+|+.+.
T Consensus 97 ------------~~W~P~~~i~~vl~si~~ll~~p~~~~ 123 (125)
T 2fo3_A 97 ------------DDYNPSLSISGLVLSIISMLSSAKEKK 123 (125)
T ss_dssp ------------TTCCTTCCHHHHHHHHHHHHC------
T ss_pred ------------CCCCCCCcHHHHHHHHHHHHhCccccc
Confidence 789999999999999999999988653
No 45
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=8.8e-38 Score=253.60 Aligned_cols=139 Identities=27% Similarity=0.445 Sum_probs=123.0
Q ss_pred CCCCC----CeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecc-----cccCccCCCCcE
Q psy15977 3 KNPVE----GFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTE-----IWHPNIEKNGDV 73 (152)
Q Consensus 3 ~~p~~----g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~-----i~HPni~~~G~i 73 (152)
+++++ ++.+.+ +++|++.|+++|.||++|||+||+|++.|.||++||++||+|+|.|+ ||||||+.+|.|
T Consensus 90 k~~p~g~~~~i~v~~-~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~~~ifHPNV~~~G~I 168 (323)
T 3ceg_A 90 TSLPLSSSSSVFVRC-DEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKV 168 (323)
T ss_dssp HHCCCCSSCCEEEEE-ESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTTTCCCBTTBCTTCBB
T ss_pred hCCCCCcccceeecc-cCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCCcccccCCCCcCCeE
Confidence 34555 455666 66799999999999999999999999999999999999999999998 999999999999
Q ss_pred EeccCCCCCCCCcccccccCCCCCcC-CHHHHHHHHHHhhC--CCCCCCcccHHH--HHhhhhHhhHHHHHHHHHHHHHH
Q psy15977 74 CISILHEPGDDKYGYERAYERWLPVH-TVETILISVISMLA--DPNDESPANVDA--AVSQYSSENYHWVRRKKIFIKSM 148 (152)
Q Consensus 74 cl~~l~~~~~~~~~~~~~~~~W~p~~-ti~~iL~~i~~ll~--~p~~~~p~n~~a--a~~~~~~~~~~~f~~~~~~~~~~ 148 (152)
||++|+.++ +...++|+|++ ||++||++|++||. +|++++|+|.++ +.+ +.+|+++|+++|++++.+
T Consensus 169 CLsiL~~~~------g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~--~~~d~~~Y~~~vr~~t~k 240 (323)
T 3ceg_A 169 CLSILNTWH------GRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPS--GTQSSREYDGNIRQATVK 240 (323)
T ss_dssp CCGGGTSSC------CCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHH--HHHHHHHHHHHHHHHHHH
T ss_pred echhhcccc------CCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhh--hhhhHHHHHHHHHHHHHH
Confidence 999997432 12347899999 89999999999996 688899999987 567 999999999999999998
Q ss_pred hc
Q psy15977 149 LS 150 (152)
Q Consensus 149 ~~ 150 (152)
+|
T Consensus 241 ~A 242 (323)
T 3ceg_A 241 WA 242 (323)
T ss_dssp HT
T ss_pred Hh
Confidence 76
No 46
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=9.8e-38 Score=231.74 Aligned_cols=115 Identities=28% Similarity=0.533 Sum_probs=104.5
Q ss_pred CCCCCCC-eEEEecCCCC--ceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccC-CCCcEEecc
Q psy15977 2 NKNPVEG-FSAGLVDDSD--IYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIE-KNGDVCISI 77 (152)
Q Consensus 2 ~~~p~~g-~~~~p~~~~n--~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~-~~G~icl~~ 77 (152)
++++++| +++.+++++| +++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+ .+|+||+++
T Consensus 38 ~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPNV~~~~G~ICl~i 117 (160)
T 2a4d_A 38 QKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRA 117 (160)
T ss_dssp HSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCBBCGGG
T ss_pred HhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCceeCCEECCCCEEehhh
Confidence 5677788 7888866655 99999999999999999999999999999999999999999999999999 699999999
Q ss_pred CCCCCCCCcccccccCCCCCcCCHHHHHHHHHHhhC-CCCCCCcccHHHHH
Q psy15977 78 LHEPGDDKYGYERAYERWLPVHTVETILISVISMLA-DPNDESPANVDAAV 127 (152)
Q Consensus 78 l~~~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~-~p~~~~p~n~~aa~ 127 (152)
|.. .++|+|++||++||++|++||. +||.++|+|.|||.
T Consensus 118 L~~-----------~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa~ 157 (160)
T 2a4d_A 118 ISV-----------LAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQC 157 (160)
T ss_dssp SHH-----------HHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTCB
T ss_pred cCC-----------ccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhcc
Confidence 851 1579999999999999999996 69999999999983
No 47
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=3.5e-37 Score=223.33 Aligned_cols=102 Identities=31% Similarity=0.669 Sum_probs=96.9
Q ss_pred CCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEeccc-ccCccCCCCcEEeccCCC
Q psy15977 2 NKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEI-WHPNIEKNGDVCISILHE 80 (152)
Q Consensus 2 ~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i-~HPni~~~G~icl~~l~~ 80 (152)
++++++|+++.+ +++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |||||+.+|+||+++|.
T Consensus 33 ~~~~~~~~~~~~-~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~~G~ICl~iL~- 110 (136)
T 2h2y_A 33 LKNPPINCTIDV-HPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLG- 110 (136)
T ss_dssp HHSCCTTEEEEE-CTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTBCTTCCBCCGGGT-
T ss_pred HhCCCCCeEEEe-ccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcCCCCCEEECcccc-
Confidence 467889999998 667999999999999999999999999999999999999999999997 99999999999999997
Q ss_pred CCCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCC
Q psy15977 81 PGDDKYGYERAYERWLPVHTVETILISVISMLADPND 117 (152)
Q Consensus 81 ~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~ 117 (152)
++|+|++||++||++|++||.+|+.
T Consensus 111 ------------~~WsP~~ti~~vL~si~sll~~p~~ 135 (136)
T 2h2y_A 111 ------------DDYNPSLSISGLILSIISMLSSAKE 135 (136)
T ss_dssp ------------TTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred ------------CCCCCCCcHHHHHHHHHHHHhCcCc
Confidence 7899999999999999999999874
No 48
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=2.2e-37 Score=231.99 Aligned_cols=114 Identities=28% Similarity=0.538 Sum_probs=103.3
Q ss_pred CCCCCCC-eEEEecCCCC--ceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccC-CCCcEEecc
Q psy15977 2 NKNPVEG-FSAGLVDDSD--IYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIE-KNGDVCISI 77 (152)
Q Consensus 2 ~~~p~~g-~~~~p~~~~n--~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~-~~G~icl~~ 77 (152)
++++++| +++.+++++| +++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+ .+|+||+++
T Consensus 48 ~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPNV~~~~G~ICl~i 127 (170)
T 2hlw_A 48 QKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRA 127 (170)
T ss_dssp HHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCCSSBCSSSCBBCTTT
T ss_pred HhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccccCCEeCCCCEEEhhh
Confidence 4567777 7788766655 99999999999999999999999999999999999999999999999999 699999998
Q ss_pred CCCCCCCCcccccccCCCCCcCCHHHHHHHHHHhhCC-CCCCCcccHHHH
Q psy15977 78 LHEPGDDKYGYERAYERWLPVHTVETILISVISMLAD-PNDESPANVDAA 126 (152)
Q Consensus 78 l~~~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~-p~~~~p~n~~aa 126 (152)
|.. .++|+|++||++||++|++||.+ ||.++|+|.|||
T Consensus 128 L~~-----------~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 166 (170)
T 2hlw_A 128 ISV-----------LAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 166 (170)
T ss_dssp CHH-----------HHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred cCC-----------CCCCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence 851 15799999999999999999974 999999999998
No 49
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.9e-36 Score=217.30 Aligned_cols=98 Identities=36% Similarity=0.745 Sum_probs=92.5
Q ss_pred CCCCCCCeEEE--ecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccc--cCccCCCCcEEecc
Q psy15977 2 NKNPVEGFSAG--LVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIW--HPNIEKNGDVCISI 77 (152)
Q Consensus 2 ~~~p~~g~~~~--p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~--HPni~~~G~icl~~ 77 (152)
++++++||++. + +++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|+++ ||||+.+|+||+++
T Consensus 35 ~~~~~~gi~v~~~~-~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV~~~G~ICL~i 113 (136)
T 2a7l_A 35 QNDPPPGMTLNEKS-VQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSI 113 (136)
T ss_dssp HHSCCTTCCCCTTC-CCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTBCTTCBBCCGG
T ss_pred HhCCCCCEEEEEee-CccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccCCCCCeEEchh
Confidence 56788999965 6 6779999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCCCCCCcccccccCCCCCcCCHHHHHHHHHHhhC
Q psy15977 78 LHEPGDDKYGYERAYERWLPVHTVETILISVISMLA 113 (152)
Q Consensus 78 l~~~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~ 113 (152)
|+ ++|+|++||++||++|++||.
T Consensus 114 L~-------------~~WsP~~ti~~vL~sI~slL~ 136 (136)
T 2a7l_A 114 LT-------------EDWSPALSVQSVCLSIISMLS 136 (136)
T ss_dssp GT-------------TTCCTTSCHHHHHHHHHHHTC
T ss_pred cC-------------CCCCCCCcHHHHHHHHHHHhC
Confidence 97 789999999999999999984
No 50
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=6.2e-34 Score=216.16 Aligned_cols=105 Identities=31% Similarity=0.654 Sum_probs=90.0
Q ss_pred CCCCCCCeEEEecCCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCCC
Q psy15977 2 NKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEP 81 (152)
Q Consensus 2 ~~~p~~g~~~~p~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~ 81 (152)
++++++||++.+ +++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+ ||||+.+|+||+++|..
T Consensus 27 ~~~~~~~i~~~p-~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~~~~G~ICL~iL~~- 102 (187)
T 2f4w_A 27 KKDPVPYICAEP-LPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKCNTRLCLSITDF- 102 (187)
T ss_dssp HHSCCTTEEEEE-ETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSBCTTSCBC-------
T ss_pred HhCCCCCEEEEE-cCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--CceeccCCeEeeecccc-
Confidence 467899999999 56699999999999999999999999999999999999999999998 99999999999999942
Q ss_pred CCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCC
Q psy15977 82 GDDKYGYERAYERWLPVHTVETILISVISMLADPNDES 119 (152)
Q Consensus 82 ~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~ 119 (152)
+.++|+|+++|.+||++|++||.+|+++.
T Consensus 103 ---------~~~~W~P~~ti~~vL~si~sll~~p~p~~ 131 (187)
T 2f4w_A 103 ---------HPDTWNPAWSVSTILTGLLSFMVEKGPTL 131 (187)
T ss_dssp -------------CCTTCCHHHHHHHHHHHHHSCCCCT
T ss_pred ---------CccCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 12789999999999999999999988763
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=100.00 E-value=4.1e-35 Score=222.46 Aligned_cols=100 Identities=18% Similarity=0.523 Sum_probs=92.8
Q ss_pred CCCeEEEecCCCCceeEEEEEeCC-CCCCCCC-----------cEEEEEEEcCCCCCCCCCceeEecccccC-ccCCCCc
Q psy15977 6 VEGFSAGLVDDSDIYKWEVLIIGP-PDTMYEG-----------GFFKAHLHFPKEYPLRPPKMKFVTEIWHP-NIEKNGD 72 (152)
Q Consensus 6 ~~g~~~~p~~~~n~~~w~~~i~Gp-~~tpy~g-----------g~f~~~i~~p~~yP~~pP~v~f~t~i~HP-ni~~~G~ 72 (152)
+.||++.+. ++|+++|+++|.|| ++|||+| |.|++.|.||++||++||+|+|.|++||| ||+.+|.
T Consensus 47 ~~~~~~~p~-~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~PP~V~f~tpi~hPnnV~~~G~ 125 (186)
T 1zuo_A 47 TGIYSVELI-NDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGA 125 (186)
T ss_dssp TTSEEEEEE-TTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCCEEEEEESCEESTTBCGGGB
T ss_pred CCcEEEEEc-CCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCCCeEEEeCCccCCCccCCCCc
Confidence 678999994 45999999999998 9999998 89999999999999999999999999999 6999999
Q ss_pred EEeccCCCCCCCCcccccccCCCCCcCCHHHHHHHHHHhhCCCCCC
Q psy15977 73 VCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDE 118 (152)
Q Consensus 73 icl~~l~~~~~~~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~ 118 (152)
||+++|.. ++|+|++||++||++|++||.+|+..
T Consensus 126 ICL~iL~~------------~~WsP~~ti~~VL~sI~slL~~p~a~ 159 (186)
T 1zuo_A 126 LCMELLTK------------QGWSSAYSIESVIMQINATLVKGKAR 159 (186)
T ss_dssp BCCGGGST------------TTCCTTSCHHHHHHHHHHHHHHTTCE
T ss_pred EEeccCCC------------CCCCCcCcHHHHHHHHHHHHcCCChh
Confidence 99999963 68999999999999999999988643
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.87 E-value=8.2e-24 Score=156.22 Aligned_cols=96 Identities=16% Similarity=0.241 Sum_probs=80.8
Q ss_pred CCCceeEEEEEeCCCCCCCCCc----------EEEEEEEcCCCCCCCCCceeEecc-cccCccCCCCcEEeccCCCCCCC
Q psy15977 16 DSDIYKWEVLIIGPPDTMYEGG----------FFKAHLHFPKEYPLRPPKMKFVTE-IWHPNIEKNGDVCISILHEPGDD 84 (152)
Q Consensus 16 ~~n~~~w~~~i~Gp~~tpy~gg----------~f~~~i~~p~~yP~~pP~v~f~t~-i~HPni~~~G~icl~~l~~~~~~ 84 (152)
.+|++.|.+++.||+||+|+|| .|.+++.||++||++||+|+|.+. +|||||+.+|+|||++|..+.
T Consensus 52 k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~~~~hpnmY~~G~ICLdIL~kp~-- 129 (172)
T 2z6o_A 52 KNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPL-- 129 (172)
T ss_dssp HHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSSBCTTSBBCCCTTHHHH--
T ss_pred ccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCCCCCCCCCCCCCcEechhhcccc--
Confidence 4589999999999999999999 999999999999999999999998 999999999999999995200
Q ss_pred CcccccccCCCCCcCCHHHHHHHHHHhhCCCCCCCcccHHHHHh
Q psy15977 85 KYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVS 128 (152)
Q Consensus 85 ~~~~~~~~~~W~p~~ti~~iL~~i~~ll~~p~~~~p~n~~aa~~ 128 (152)
| ..|+|+++|.++|.- .+..++..|+..+
T Consensus 130 -W------s~~~P~~~IahiL~l--------gl~pwla~eip~l 158 (172)
T 2z6o_A 130 -W------ARNVPKFGLAHLMAL--------GLGPWLAVEIPDL 158 (172)
T ss_dssp -H------HHHTTSCCHHHHHHH--------THHHHHHHHHHHH
T ss_pred -c------cccCCccCHHHHHhh--------ccCchhhhhhHHH
Confidence 0 235599999999843 3445666777666
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.80 E-value=8.7e-20 Score=135.15 Aligned_cols=91 Identities=21% Similarity=0.404 Sum_probs=80.4
Q ss_pred CCCCceeEEEEEeCCCCCCCCCcE---EEEEEEcCCCCCCCCCceeEec-------c---cc-cCccCCCCcEEeccCCC
Q psy15977 15 DDSDIYKWEVLIIGPPDTMYEGGF---FKAHLHFPKEYPLRPPKMKFVT-------E---IW-HPNIEKNGDVCISILHE 80 (152)
Q Consensus 15 ~~~n~~~w~~~i~Gp~~tpy~gg~---f~~~i~~p~~yP~~pP~v~f~t-------~---i~-HPni~~~G~icl~~l~~ 80 (152)
.++...++-+.+.|.-.++|+|+. |.+.|.||++||++||.|.|.+ + |+ ||||+++|+||++.|
T Consensus 56 ~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~~~~~~I~~hpnVD~~G~I~lpyL-- 133 (162)
T 3r3q_A 56 HSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPIL-- 133 (162)
T ss_dssp CTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTTTSCTTSTHHHHBCTTSBBCCGGG--
T ss_pred cCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccccccccccCCCCCCCCCCcEeCccc--
Confidence 445666777777887779999999 8899999999999999998866 1 77 999999999999999
Q ss_pred CCCCCcccccccCCCCC-cCCHHHHHHHHHHhhCCCCCCC
Q psy15977 81 PGDDKYGYERAYERWLP-VHTVETILISVISMLADPNDES 119 (152)
Q Consensus 81 ~~~~~~~~~~~~~~W~p-~~ti~~iL~~i~~ll~~p~~~~ 119 (152)
++|+| +.++.++|++|+++|.+|+++.
T Consensus 134 ------------~~W~p~~s~L~~ll~~l~~lf~ep~~d~ 161 (162)
T 3r3q_A 134 ------------HAWDPAAMNLIMVVQELMSLLHEPPQDQ 161 (162)
T ss_dssp ------------GSCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred ------------ccCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 46999 6899999999999999999875
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.59 E-value=2.1e-16 Score=114.51 Aligned_cols=59 Identities=22% Similarity=0.464 Sum_probs=56.1
Q ss_pred eeEEEEEeCCCCCCCCCc----------EEEEEEEcCCCCCCCCCceeEecc-cccCccCCCCcEEeccC
Q psy15977 20 YKWEVLIIGPPDTMYEGG----------FFKAHLHFPKEYPLRPPKMKFVTE-IWHPNIEKNGDVCISIL 78 (152)
Q Consensus 20 ~~w~~~i~Gp~~tpy~gg----------~f~~~i~~p~~yP~~pP~v~f~t~-i~HPni~~~G~icl~~l 78 (152)
..|...+.||+||+|.|+ .|.+.+.||.+||.+||.|+|.+. .+|||++.+|+|||+++
T Consensus 58 ~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ldgkt~kmYr~GkICLdIh 127 (168)
T 3kpa_A 58 SHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEGKTVKMYRGGKICMTTH 127 (168)
T ss_dssp CCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSSEETTTEECCCTT
T ss_pred CCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccccCcCccccCCCcEEeccc
Confidence 579999999999999999 999999999999999999999995 89999999999999876
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.52 E-value=1.7e-14 Score=105.05 Aligned_cols=80 Identities=21% Similarity=0.446 Sum_probs=70.8
Q ss_pred CCCceeEEEEEeCCCCCCCCCcEEEE--EEEcCCCCCCCCCceeEecc------cccCccCCCCcEEeccCCCCCCCCcc
Q psy15977 16 DSDIYKWEVLIIGPPDTMYEGGFFKA--HLHFPKEYPLRPPKMKFVTE------IWHPNIEKNGDVCISILHEPGDDKYG 87 (152)
Q Consensus 16 ~~n~~~w~~~i~Gp~~tpy~gg~f~~--~i~~p~~yP~~pP~v~f~t~------i~HPni~~~G~icl~~l~~~~~~~~~ 87 (152)
..++..|.++|. .+|+|+.|.+ .|.||++||++||.| |.++ ..||||+.+|+||++.|.
T Consensus 50 ~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~-------- 116 (146)
T 3obq_A 50 SRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLH-------- 116 (146)
T ss_dssp TCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHH--------
T ss_pred hheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEeccccc--------
Confidence 348899999997 6899999984 999999999999999 6655 489999999999999994
Q ss_pred cccccCCCCC-cCCHHHHHHHHHHhhCC
Q psy15977 88 YERAYERWLP-VHTVETILISVISMLAD 114 (152)
Q Consensus 88 ~~~~~~~W~p-~~ti~~iL~~i~~ll~~ 114 (152)
+|++ ..++.++|..+++.|.+
T Consensus 117 ------~W~~~~snL~~ll~~l~~~F~~ 138 (146)
T 3obq_A 117 ------EWKHPQSDLLGLIQVMIVVFGD 138 (146)
T ss_dssp ------TCCTTTCCHHHHHHHHHHHHHH
T ss_pred ------ccCCCCCCHHHHHHHHHHHHhh
Confidence 5988 88999999999999974
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.61 E-value=0.04 Score=37.94 Aligned_cols=42 Identities=10% Similarity=0.177 Sum_probs=28.3
Q ss_pred ceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEec
Q psy15977 19 IYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60 (152)
Q Consensus 19 ~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t 60 (152)
...+.+.|..-.+..-+.-.+.+.+.+|++||.+||.|...+
T Consensus 37 ~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 37 PPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp SCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred CCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 345555554222222234478899999999999999997755
No 57
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=93.83 E-value=0.3 Score=34.84 Aligned_cols=23 Identities=13% Similarity=0.236 Sum_probs=21.0
Q ss_pred EEEEEEEcCCCCCCCCCceeEec
Q psy15977 38 FFKAHLHFPKEYPLRPPKMKFVT 60 (152)
Q Consensus 38 ~f~~~i~~p~~yP~~pP~v~f~t 60 (152)
.+.+.|.+|.+||..+|.|...+
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~ 98 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRS 98 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEEC
T ss_pred eEEEEEEcCCCCCCCCCcEEEEe
Confidence 79999999999999999998665
No 58
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=93.43 E-value=0.31 Score=33.33 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=28.4
Q ss_pred ceeEEEEEeCCCCCCC--CCcEEEEEEEcCCCCCCCCCceeEec
Q psy15977 19 IYKWEVLIIGPPDTMY--EGGFFKAHLHFPKEYPLRPPKMKFVT 60 (152)
Q Consensus 19 ~~~w~~~i~Gp~~tpy--~gg~f~~~i~~p~~yP~~pP~v~f~t 60 (152)
...+.+.|..+.+..- ..-.+.+.+.+|++||..+|.|...+
T Consensus 39 ~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~ 82 (128)
T 2day_A 39 PWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN 82 (128)
T ss_dssp CEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred CeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEc
Confidence 4455556653222111 12478899999999999999998876
No 59
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=92.63 E-value=0.35 Score=33.51 Aligned_cols=41 Identities=15% Similarity=0.269 Sum_probs=29.1
Q ss_pred ceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEec
Q psy15977 19 IYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60 (152)
Q Consensus 19 ~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t 60 (152)
...+.+.|....+ .-..-.+.+.+.+|++||..+|.|...+
T Consensus 45 ~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 85 (138)
T 2yz0_A 45 QIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN 85 (138)
T ss_dssp CSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred CcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence 3456677763222 1123478899999999999999998765
No 60
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.57 E-value=0.41 Score=32.75 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=28.3
Q ss_pred ceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEec
Q psy15977 19 IYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60 (152)
Q Consensus 19 ~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t 60 (152)
...+.+.|... +..=..-.+.+.+.+|++||..+|.|...+
T Consensus 39 ~~~f~i~l~~~-~~~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 79 (128)
T 2ebk_A 39 GTVFRIHTKAE-GFMDADIPLELVFHLPVNYPSCLPGISINS 79 (128)
T ss_dssp CEEEEEEEECC-TTTTCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred CCeEEEEecCC-CCCCCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence 45777777632 210112478999999999999999987553
No 61
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=90.98 E-value=0.29 Score=33.79 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=21.1
Q ss_pred cEEEEEEEcCCCCCCCCCceeEec
Q psy15977 37 GFFKAHLHFPKEYPLRPPKMKFVT 60 (152)
Q Consensus 37 g~f~~~i~~p~~yP~~pP~v~f~t 60 (152)
-.+.+.+.||++||..+|.|....
T Consensus 63 ~~~~L~v~~p~~YP~~~P~i~l~~ 86 (137)
T 1ukx_A 63 VQVELRVKCPPTYPDVVPEIDLKN 86 (137)
T ss_dssp CEEEEEECCCTTTTSSCCCCEEEE
T ss_pred eEEEEEEECCCCCCCCCCcEEEec
Confidence 468999999999999999998754
No 62
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=89.57 E-value=1.1 Score=33.35 Aligned_cols=65 Identities=14% Similarity=0.251 Sum_probs=49.0
Q ss_pred CCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecccccCccCCCCcEEeccCCCCCCCCcccccccCCCC
Q psy15977 17 SDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWL 96 (152)
Q Consensus 17 ~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~~~~~~~~~~~~~~W~ 96 (152)
.++...++.+..-. |....++|.++.+||.++|.+...-++ |. . -.|+
T Consensus 23 ~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~------------~-------------~~w~ 70 (186)
T 3zqs_A 23 TCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYFVDFPV--PF------------C-------------ASWT 70 (186)
T ss_dssp TTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEECCCSS--CC------------C-------------CCCC
T ss_pred CCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeEEcCCC--Cc------------c-------------cccC
Confidence 37788888887433 568899999999999999977655432 11 0 3599
Q ss_pred CcCCHHHHHHHHHHhhC
Q psy15977 97 PVHTVETILISVISMLA 113 (152)
Q Consensus 97 p~~ti~~iL~~i~~ll~ 113 (152)
|..++.+++.+++..+.
T Consensus 71 ~~ssL~~v~~qF~~~Le 87 (186)
T 3zqs_A 71 PQSSLISIYSQFLAAIE 87 (186)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHH
Confidence 99999988888777664
No 63
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=87.35 E-value=0.42 Score=33.80 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=21.2
Q ss_pred cEEEEEEEcCCCCCCCCCceeEec
Q psy15977 37 GFFKAHLHFPKEYPLRPPKMKFVT 60 (152)
Q Consensus 37 g~f~~~i~~p~~yP~~pP~v~f~t 60 (152)
-.+.+.+.+|.+||..||.|....
T Consensus 73 ~~l~L~v~lP~~YP~~~P~i~l~~ 96 (152)
T 2dax_A 73 AMFSLACILPFKYPAVLPEITVRS 96 (152)
T ss_dssp EEEEEEEEECSSTTSSCCCCEEEC
T ss_pred ceEEEEEECCCCCCCCCCeEEEEc
Confidence 368899999999999999998765
No 64
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=68.31 E-value=1 Score=30.48 Aligned_cols=30 Identities=7% Similarity=-0.120 Sum_probs=0.0
Q ss_pred CCCCcccHHHHHhhhhHhhHHHHHHHHHHHHH
Q psy15977 116 NDESPANVDAAVSQYSSENYHWVRRKKIFIKS 147 (152)
Q Consensus 116 ~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~ 147 (152)
....|.+.++|++ |+++++.|.+.|+.|+.
T Consensus 22 ~~~~PQDA~VA~q--y~~~~~~f~~TAr~WT~ 51 (108)
T 2cwb_A 22 TTTEAVDAATAEK--VFKQYANDNGVDGEWTY 51 (108)
T ss_dssp --------------------------------
T ss_pred ccCCchhHHHHHH--HHhchhccccccccccc
Confidence 3457899999999 99999999999999983
No 65
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=26.40 E-value=74 Score=19.79 Aligned_cols=42 Identities=5% Similarity=-0.040 Sum_probs=31.3
Q ss_pred HHHhhCCCCCCCcccHHHHHhhhhHhhHHHHHHHHHHHHHHhcc
Q psy15977 108 VISMLADPNDESPANVDAAVSQYSSENYHWVRRKKIFIKSMLSY 151 (152)
Q Consensus 108 i~~ll~~p~~~~p~n~~aa~~~~~~~~~~~f~~~~~~~~~~~~~ 151 (152)
|+.|+..-++...++.++-++ ..+=.+.|...+-..+-++|+
T Consensus 11 L~~Lv~~idp~~~ld~~vee~--ll~lADdFV~~V~~~ac~lAK 52 (76)
T 1h3o_B 11 LQDLVREVDPNEQLDEDVEEM--LLQIADDFIESVVTAACQLAR 52 (76)
T ss_dssp HHHHHHHHCSSCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 334443335667889999998 888888999998888877764
No 66
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=25.94 E-value=25 Score=16.96 Aligned_cols=16 Identities=31% Similarity=0.704 Sum_probs=9.6
Q ss_pred CCCCCceeEecccccC
Q psy15977 50 PLRPPKMKFVTEIWHP 65 (152)
Q Consensus 50 P~~pP~v~f~t~i~HP 65 (152)
|+.-|.-.|..+.|||
T Consensus 4 pmtlpenyfserpyhp 19 (26)
T 2jrw_A 4 PMTLPENYFSERPYHP 19 (26)
T ss_dssp CCCCSSSSCCSSSCCS
T ss_pred ccccchhhcccCCCCC
Confidence 4445555566666776
No 67
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=24.33 E-value=2e+02 Score=20.72 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=32.3
Q ss_pred CCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCceeEecc
Q psy15977 16 DSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTE 61 (152)
Q Consensus 16 ~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~~p~~yP~~pP~v~f~t~ 61 (152)
++...+|.+-+.|+.+.-...-+=++...+.+.||. |.-.+..+
T Consensus 29 ~~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~n--p~Rvv~~P 72 (175)
T 3rls_A 29 AEHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN--PVRSIEAP 72 (175)
T ss_dssp TTCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSS--CEEEECSS
T ss_pred CCCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCC--CcEEEeCC
Confidence 346789999999987765544577788899999974 55555544
No 68
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=23.83 E-value=69 Score=23.73 Aligned_cols=26 Identities=19% Similarity=0.427 Sum_probs=22.0
Q ss_pred CCcEEEEEEEcCCCCCC-----CCCceeEec
Q psy15977 35 EGGFFKAHLHFPKEYPL-----RPPKMKFVT 60 (152)
Q Consensus 35 ~gg~f~~~i~~p~~yP~-----~pP~v~f~t 60 (152)
+.|.|.|.-.+|--||. +||-|.|.-
T Consensus 109 ~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~V 139 (209)
T 2bum_A 109 GTGFWSFNTIKPGAVPGRKGSTQAPHISLII 139 (209)
T ss_dssp TTCCEEEEEECCCCCBCSTTCBCCCCEEEEE
T ss_pred CCcEEEEEEEccCcccCCCCCccCcEEEEEE
Confidence 45889999999999998 788887764
Done!