RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15977
(152 letters)
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation
pathway, structural genomics, structural genomics
consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB:
1pzv_A
Length = 172
Score = 231 bits (590), Expect = 2e-79
Identities = 109/140 (77%), Positives = 125/140 (89%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
LNKNPVEGFSAGL+DD+D+Y+WEVLIIGPPDT+YEGG FKAHL FPK+YPLRPPKMKF+T
Sbjct: 29 LNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFIT 88
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
EIWHPN++KNGDVCISILHEPG+DKYGYE+ ERWLP+HTVETI+ISVISMLADPN +SP
Sbjct: 89 EIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSP 148
Query: 121 ANVDAAVSQYSSENYHWVRR 140
ANVDAA N + R+
Sbjct: 149 ANVDAAKEWREDRNGEFKRK 168
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase,
UBL conjugation pathway, endo reticulum, membrane,
metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A
2kly_A
Length = 164
Score = 225 bits (575), Expect = 4e-77
Identities = 77/146 (52%), Positives = 99/146 (67%), Gaps = 6/146 (4%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L NP EG AG +++ + ++WE LI+GP DT +E G F A L FP +YPL PPKM+F
Sbjct: 15 LTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTC 74
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
E++HPNI +G VCISILH PGDD GYE + ERW PV +VE IL+SV+SMLA+PNDES
Sbjct: 75 EMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESG 134
Query: 121 ANVDAAV------SQYSSENYHWVRR 140
ANVDA+ Q+ V++
Sbjct: 135 ANVDASKMWRDDREQFYKIAKQIVQK 160
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase,
yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 165
Score = 224 bits (574), Expect = 6e-77
Identities = 72/146 (49%), Positives = 93/146 (63%), Gaps = 6/146 (4%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L K+ G AG +++I+ W+ LI GPPDT Y G F A L FPK+YPL PPK+ F
Sbjct: 16 LIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTP 75
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I HPNI NG+VCISILH PGDD YE A ERW PV +VE IL+SV+SML++PN ES
Sbjct: 76 SILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESG 135
Query: 121 ANVDAAV------SQYSSENYHWVRR 140
AN+DA + ++ + + +
Sbjct: 136 ANIDACILWRDNRPEFERQVKLSILK 161
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme
domain, E2 domain, ligase-ligas inhibitor complex; HET:
U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Length = 183
Score = 225 bits (575), Expect = 9e-77
Identities = 76/127 (59%), Positives = 91/127 (71%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L + PVEGF LVD+ D+Y WEV I GPP+T YEGG+FKA L FP +YP PP +F+T
Sbjct: 19 LQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLT 78
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
++WHPNI + GDVCISILH P DD E ERW P V TIL+SVIS+L +PN SP
Sbjct: 79 KMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSP 138
Query: 121 ANVDAAV 127
ANVDA+V
Sbjct: 139 ANVDASV 145
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics
consortium, SGC, ubiquitin- conjugating enzyme; 2.18A
{Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 189 bits (483), Expect = 5e-63
Identities = 43/127 (33%), Positives = 72/127 (56%), Gaps = 13/127 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L +N +G +A V + D+ +WEV I G +++++G F+ +HF EY PP +KF+T
Sbjct: 35 LKENNYKGITAKPVSE-DMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFIT 93
Query: 61 EIWHPNI-EKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDES 119
+HPN+ G CI L P E+W +T+ +IL+++ ML++P E+
Sbjct: 94 IPFHPNVDPHTGQPCIDFLDNP-----------EKWNTNYTLSSILLALQVMLSNPVLEN 142
Query: 120 PANVDAA 126
P N++AA
Sbjct: 143 PVNLEAA 149
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 185 bits (473), Expect = 1e-61
Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 15/130 (11%)
Query: 1 LNKNPVEGFSAGLVDDS----DIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKM 56
K+ GF A V + D+ KWE I G T + GG + + +P EYP +PPK+
Sbjct: 16 WRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKV 75
Query: 57 KFVTEIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPN 116
KF +HPN+ +G +C+SIL+E + W P T++ I++ V +L PN
Sbjct: 76 KFPAGFYHPNVYPSGTICLSILNED-----------QDWRPAITLKQIVLGVQDLLDSPN 124
Query: 117 DESPANVDAA 126
SPA A
Sbjct: 125 PNSPAQEPAW 134
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein
interaction, protein ligase complex; HET: DNA; 1.90A
{Schizosaccharomyces pombe}
Length = 163
Score = 185 bits (472), Expect = 2e-61
Identities = 49/130 (37%), Positives = 70/130 (53%), Gaps = 15/130 (11%)
Query: 1 LNKNPVEGFSAGLVDDS----DIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKM 56
++ GF A S D+ W+V I G P T +EGG +K + FP+EYP RPPK
Sbjct: 22 WRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKC 81
Query: 57 KFVTEIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPN 116
+F ++HPN+ +G VC+SIL+E E W P T++ IL+ + +L DPN
Sbjct: 82 RFTPPLFHPNVYPSGTVCLSILNEE-----------EGWKPAITIKQILLGIQDLLDDPN 130
Query: 117 DESPANVDAA 126
SPA +A
Sbjct: 131 IASPAQTEAY 140
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 185 bits (472), Expect = 2e-61
Identities = 51/126 (40%), Positives = 75/126 (59%), Gaps = 14/126 (11%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
+ ++ G SA + D ++ W +IIGP DT YE G F+ L F +EYP +PP +KF++
Sbjct: 16 MKEDAPPGVSASPLPD-NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLS 74
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
E++HPN+ NG++C+ IL RW P + V +IL S+ S+ DPN SP
Sbjct: 75 EMFHPNVYANGEICLDILQ-------------NRWTPTYDVASILTSIQSLFNDPNPASP 121
Query: 121 ANVDAA 126
ANV+AA
Sbjct: 122 ANVEAA 127
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle,
nucleotide-binding, UBL CON pathway; 2.50A {Homo
sapiens} PDB: 2edi_A
Length = 167
Score = 185 bits (471), Expect = 3e-61
Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 17/147 (11%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L N D + ++ +++ + P + Y+GG F+ P Y + PPK+K +T
Sbjct: 26 LEANLPCTCKVHFPDPNKLHCFQL-TVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLT 84
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLAD-PNDES 119
+IWHPNI + G++C+S+L E D W P T++ ++ + S+ D N +
Sbjct: 85 KIWHPNITETGEICLSLLREHSIDG-------TGWAPTRTLKDVVWGLNSLFTDLLNFDD 137
Query: 120 PANVDAAVSQYSSENYHWVRRKKIFIK 146
P N++AA H +R K+ F
Sbjct: 138 PLNIEAAE--------HHLRDKEDFRN 156
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase;
2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A
2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Length = 152
Score = 184 bits (469), Expect = 4e-61
Identities = 49/126 (38%), Positives = 73/126 (57%), Gaps = 14/126 (11%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P G S D+ +I W +I GP DT ++GG FK L F ++YP +PP ++FV+
Sbjct: 16 LQQDPPAGISGAPQDN-NIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVS 74
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
++HPNI +G +C+ IL +W P++ V IL S+ S+L DPN SP
Sbjct: 75 RMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSP 121
Query: 121 ANVDAA 126
AN +AA
Sbjct: 122 ANSEAA 127
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin
carrier protein, thioester ligase; 2.00A {Spisula
solidissima} SCOP: d.20.1.1
Length = 156
Score = 184 bits (468), Expect = 8e-61
Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 21/146 (14%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L + G +A D +++KW + GP DT+YE +K L FP +YP +PP +KF T
Sbjct: 21 LLMSGDPGITAFPDGD-NLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTT 79
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
WHPN++++G++C+ IL E W + V TIL+S+ S+L +PN+ SP
Sbjct: 80 PCWHPNVDQSGNICLDILK-------------ENWTASYDVRTILLSLQSLLGEPNNASP 126
Query: 121 ANVDAAVSQYSSENYH------WVRR 140
N AA +S++ + +
Sbjct: 127 LNAQAA-DMWSNQTEYKKVLHEKYKT 151
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A
1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A*
1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Length = 161
Score = 183 bits (466), Expect = 1e-60
Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 15/130 (11%)
Query: 1 LNKNPVEGFSAGLVDD----SDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKM 56
K+ GF A + ++ WE I G T +EGG FK + F +YP PPK
Sbjct: 19 WRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKC 78
Query: 57 KFVTEIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPN 116
KF ++HPN+ +G VC+SIL E + W P T++ IL+ + +L +PN
Sbjct: 79 KFEPPLFHPNVYPSGTVCLSILEED-----------KDWRPAITIKQILLGIQELLNEPN 127
Query: 117 DESPANVDAA 126
+SPA +A
Sbjct: 128 IQSPAQAEAY 137
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens}
SCOP: d.20.1.1
Length = 179
Score = 181 bits (461), Expect = 2e-59
Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 14/126 (11%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L + +G SA D +++KW I G T+YE +K L FP YP P +KF+T
Sbjct: 42 LMMSGDKGISAFPESD-NLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLT 100
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+HPN++ G++ + IL E+W ++ V TIL+S+ S+L +PN +SP
Sbjct: 101 PCYHPNVDTQGNISLDILK-------------EKWSALYDVRTILLSIQSLLGEPNIDSP 147
Query: 121 ANVDAA 126
N AA
Sbjct: 148 LNTHAA 153
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure,
elongated shape, E3 ubiquitin ligase, E2 ubiquitin
conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1
PDB: 1fbv_C* 3sy2_C 3sqv_C
Length = 154
Score = 179 bits (456), Expect = 4e-59
Identities = 40/126 (31%), Positives = 69/126 (54%), Gaps = 13/126 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
+ K ++ F VD++++ W+ LI P + Y+ G F+ ++FP EYP +PPK+ F T
Sbjct: 14 IRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKT 72
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPNI++ G VC+ ++ E W P + ++ S+I+++ DP E P
Sbjct: 73 KIYHPNIDEKGQVCLPVISA------------ENWKPATKTDQVIQSLIALVNDPQPEHP 120
Query: 121 ANVDAA 126
D A
Sbjct: 121 LRADLA 126
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 178 bits (453), Expect = 1e-58
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 13/126 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L K P DD+++ W ++ P Y F + FP EYP +PP +KF T
Sbjct: 16 LQKKPPPYLRNLSSDDANVLVWHA-LLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTT 74
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPN+++NG +C+ I+ E W P +L ++ ++ PN P
Sbjct: 75 KIYHPNVDENGQICLPIISS------------ENWKPCTKTCQVLEALNVLVNRPNIREP 122
Query: 121 ANVDAA 126
+D A
Sbjct: 123 LRMDLA 128
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein
complex, ubiquitin conjugating ENZY complex, peroxisomal
protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A
2y9o_A
Length = 172
Score = 174 bits (443), Expect = 7e-57
Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 25/152 (16%)
Query: 1 LNKNPVEGF--SAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKF 58
NP G S +D++D+ KWE +I GP DT YE F+ + P YP+ PPK+ F
Sbjct: 27 PIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISF 86
Query: 59 V-TEIWHPNI-EKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPN 116
+ I H N+ G++C++IL E W PV + + +V +L +P
Sbjct: 87 MQNNILHCNVKSATGEICLNILKP------------EEWTPVWDLLHCVHAVWRLLREPV 134
Query: 117 DESPANVDAAVSQYSSENY--------HWVRR 140
+SP +VD + + +++
Sbjct: 135 CDSPLDVDIG-NIIRCGDMSAYQGIVKYFLAE 165
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 169 bits (429), Expect = 6e-55
Identities = 39/130 (30%), Positives = 55/130 (42%), Gaps = 14/130 (10%)
Query: 1 LNKNPVEGFSAGLV--DDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKF 58
N EG S GL DD + W I G P T++E + + YP PP +KF
Sbjct: 34 QKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKF 93
Query: 59 VTEIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISV-ISMLADPND 117
T+I ++ G V + LH + W +T+ETILIS+ ML+ N
Sbjct: 94 DTKIEMSCVDNCGRVIKNNLHIL-----------KNWNRNYTIETILISLRQEMLSSANK 142
Query: 118 ESPANVDAAV 127
P + V
Sbjct: 143 RLPQPNEGEV 152
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway,
structural genomics, protein structure initiative; 1.10A
{Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A
2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B
3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D
4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Length = 150
Score = 167 bits (424), Expect = 2e-54
Identities = 53/147 (36%), Positives = 80/147 (54%), Gaps = 22/147 (14%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P SAG V D D++ W+ I+GPP++ Y+GG F +HFP +YP +PPK+ F T
Sbjct: 16 LGRDPPAQCSAGPVGD-DLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTT 74
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I+HPNI NG +C+ IL +W P T+ +L+S+ S+L DPN + P
Sbjct: 75 RIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDP 121
Query: 121 ANVDAAVSQYSS--ENY-----HWVRR 140
+ A Y + E Y W ++
Sbjct: 122 LVPEIA-RIYKTDRERYNQLAREWTQK 147
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo
sapiens} SCOP: d.20.1.1
Length = 158
Score = 166 bits (423), Expect = 5e-54
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 14/126 (11%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L +P +G ++ D+ +V I GP T Y GG F+ L K++P PPK F+T
Sbjct: 25 LTADPPDGIKVFPNEE-DLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLT 83
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPN+ NG++C+++L W + +L+++ +L PN ES
Sbjct: 84 KIFHPNVGANGEICVNVLK-------------RDWTAELGIRHVLLTIKCLLIHPNPESA 130
Query: 121 ANVDAA 126
N +A
Sbjct: 131 LNEEAG 136
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL
conjugation pathway; HET: CME; 1.94A {Homo sapiens}
SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Length = 165
Score = 166 bits (422), Expect = 9e-54
Identities = 49/126 (38%), Positives = 72/126 (57%), Gaps = 14/126 (11%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P SAG V D D++ W+ I+GP D+ Y+GG F +HFP +YP +PPK+ F T
Sbjct: 31 LARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT 89
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I+HPNI NG +C+ IL +W P T+ +L+S+ S+L DPN + P
Sbjct: 90 RIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDP 136
Query: 121 ANVDAA 126
+ A
Sbjct: 137 LVPEIA 142
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural
genomics consortium, ubiquit ubiquitin-conjugating
enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP:
d.20.1.1
Length = 166
Score = 164 bits (418), Expect = 4e-53
Identities = 49/126 (38%), Positives = 74/126 (58%), Gaps = 14/126 (11%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L+K+P SAG V D D++ W+ I+GP D+ Y GG F ++HFP +YP +PPK+ F T
Sbjct: 33 LSKDPPTNCSAGPVGD-DMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTT 91
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPNI G +C+ IL ++W P T+ +L+S+ S+L DPN + P
Sbjct: 92 KIYHPNINSQGAICLDILK-------------DQWSPALTISKVLLSISSLLTDPNPDDP 138
Query: 121 ANVDAA 126
+ A
Sbjct: 139 LVPEIA 144
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics,
structural genomics consortium, unknown function; 1.86A
{Plasmodium vivax} SCOP: d.20.1.1
Length = 125
Score = 163 bits (414), Expect = 4e-53
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
NP + + + +I W V +G +T+Y +K + FP +YPL+PP + F+
Sbjct: 18 FLNNPPINCTLDVHPN-NIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQ 76
Query: 61 E-IWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDES 119
+ H ++ NGD+C+S+L + + P ++ +++S+ISML+ ++
Sbjct: 77 KPPKHTHVYSNGDICLSLLG-------------DDYNPSLSISGLVLSIISMLSSAKEKK 123
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural
genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo
sapiens} SCOP: d.20.1.1
Length = 169
Score = 164 bits (417), Expect = 5e-53
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L P G + D + I+G +T YE G FK + P+ YP PP+++F+T
Sbjct: 16 LATEPPPGITCWQDKD-QMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLT 74
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I+HPNI+ G +C+ +L P W P + T+L S+ ++++PN + P
Sbjct: 75 PIYHPNIDSAGRICLDVLKLPPKGA---------WRPSLNIATVLTSIQLLMSEPNPDDP 125
Query: 121 ANVDAA 126
D +
Sbjct: 126 LMADIS 131
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown
function, structural genomics consortium, SGC; 2.80A
{Plasmodium falciparum 3D7}
Length = 136
Score = 163 bits (414), Expect = 6e-53
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 15/119 (12%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
KNP + + +I W V +G +T+Y +K + FP YPL+PP + F+
Sbjct: 32 FLKNPPINCTIDVHPS-NIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQ 90
Query: 61 E-IWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDE 118
+ H ++ NGD+C+S+L + + P ++ +++S+ISML+ ++
Sbjct: 91 KPPKHTHVYSNGDICLSVLG-------------DDYNPSLSISGLILSIISMLSSAKEK 136
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces
cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Length = 149
Score = 163 bits (414), Expect = 8e-53
Identities = 43/127 (33%), Positives = 66/127 (51%), Gaps = 14/127 (11%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
+ +P + V +SDI+ + +GPP T YEGG F + P EYP +PPKM+F T
Sbjct: 13 VKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDT 72
Query: 61 EIWHPNIEK-NGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDES 119
+++HPNI G +C+ IL W PV T+++ LIS+ ++L P
Sbjct: 73 KVYHPNISSVTGAICLDILK-------------NAWSPVITLKSALISLQALLQSPEPND 119
Query: 120 PANVDAA 126
P + + A
Sbjct: 120 PQDAEVA 126
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein
complex, E3 ligase, ubiquitiny TPR, heat-shock protein;
2.9A {Homo sapiens} SCOP: d.20.1.1
Length = 154
Score = 159 bits (404), Expect = 3e-51
Identities = 44/126 (34%), Positives = 71/126 (56%), Gaps = 14/126 (11%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L PV G A + + + V+I GP D+ +EGG FK L P+EYP+ PK++F+T
Sbjct: 17 LLAEPVPGIKAEPDES-NARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 75
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPN++K G +C+ IL ++W P + T+L+S+ ++L+ PN + P
Sbjct: 76 KIYHPNVDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDP 122
Query: 121 ANVDAA 126
D A
Sbjct: 123 LANDVA 128
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas
conjugation pathway, structural genomics, structural
genomi consortium; 1.85A {Plasmodium falciparum} PDB:
3e95_A
Length = 149
Score = 159 bits (404), Expect = 3e-51
Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 14/126 (11%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L P G A V + + + +LI GP T YEGG +K L P++YP+ PPK++F+T
Sbjct: 13 LANEPPPGIMAVPVPE-NYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLT 71
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPNI+K G +C+ IL ++W P + T+L+S+ ++L+ P + P
Sbjct: 72 KIYHPNIDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSSPEPDDP 118
Query: 121 ANVDAA 126
+ A
Sbjct: 119 LDSKVA 124
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation
pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Length = 194
Score = 160 bits (406), Expect = 5e-51
Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 22/147 (14%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
+ +P SAG D +IY+W I+GPP ++YEGG F + F EYP +PPK+ F T
Sbjct: 60 ITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRT 118
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I+H NI G +C+ IL + W P T+ +L+S+ S+L D N P
Sbjct: 119 RIYHCNINSQGVICLDILK-------------DNWSPALTISKVLLSICSLLTDCNPADP 165
Query: 121 ANVDAAVSQYSS--ENY-----HWVRR 140
A +QY + + W +R
Sbjct: 166 LVGSIA-TQYMTNRAEHDRMARQWTKR 191
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics,
PSI, protein structure initiative; 2.63A {Trypanosoma
cruzi}
Length = 167
Score = 158 bits (402), Expect = 8e-51
Identities = 25/128 (19%), Positives = 50/128 (39%), Gaps = 18/128 (14%)
Query: 4 NPVEGFSAGLVDDSDIYKWEVLIIGPPDTMY--EGGFFKAHLHFPKEYPLRPPKMKFVTE 61
+ VD IY W + + P D++Y G ++ + F +YP PP ++FVT
Sbjct: 34 GSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTP 93
Query: 62 IWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLA---DPNDE 118
++ P + G +C +++ + W P ++ V+ + +
Sbjct: 94 VYSPLVTGEGGICDRMVN-------------DFWTPDQHASDVIKLVLDRVFSQYKSRRD 140
Query: 119 SPANVDAA 126
N +A
Sbjct: 141 DDVNPEAR 148
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 159 bits (403), Expect = 2e-50
Identities = 43/127 (33%), Positives = 66/127 (51%), Gaps = 14/127 (11%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
+ +P + V +SDI+ + +GPP T YEGG F + P EYP +PPKM+F T
Sbjct: 14 VKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDT 73
Query: 61 EIWHPNI-EKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDES 119
+++HPNI G +C+ IL W PV T+++ LIS+ ++L P
Sbjct: 74 KVYHPNISSVTGAICLDILR-------------NAWSPVITLKSALISLQALLQSPEPND 120
Query: 120 PANVDAA 126
P + + A
Sbjct: 121 PQDAEVA 127
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A
2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Length = 155
Score = 157 bits (398), Expect = 3e-50
Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 14/126 (11%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L +PV G +A DD ++ ++V I GP + YE G F+ L+ P +YP+ PK++F+T
Sbjct: 17 LVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT 75
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPNI++ G +C+ +L W P + T+L+S+ ++LA PN P
Sbjct: 76 KIYHPNIDRLGRICLDVLK-------------TNWSPALQIRTVLLSIQALLASPNPNDP 122
Query: 121 ANVDAA 126
D A
Sbjct: 123 LANDVA 128
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Length = 138
Score = 156 bits (396), Expect = 3e-50
Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 15/126 (11%)
Query: 4 NPVEGFSAGLVDDSD--IYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTE 61
E S GL D D + KW I+GPP + +E + + YP PPK+ F+++
Sbjct: 22 FGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISK 81
Query: 62 IWHPNI-EKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I P + G+V W +T+ET+L+ + +A P ++
Sbjct: 82 INLPCVNPTTGEVQTDFHTL------------RDWKRAYTMETLLLDLRKEMATPANKKL 129
Query: 121 ANVDAA 126
Sbjct: 130 RQPKEG 135
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural
genomics consortium, (SGC), ligase; 1.82A {Homo sapiens}
SCOP: d.20.1.1
Length = 136
Score = 153 bits (389), Expect = 4e-49
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 16/116 (13%)
Query: 1 LNKNPVEGFSAGLVD-DSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFV 59
L +P G + + I +W V + G P T+YEG F+ F YP P++ F
Sbjct: 34 LQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFT 93
Query: 60 TE--IWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLA 113
E HP++ NG +C+SIL E W P +V+++ +S+ISML+
Sbjct: 94 GENIPVHPHVYSNGHICLSILT-------------EDWSPALSVQSVCLSIISMLS 136
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating
enzyme variant, UBC13, HUBC13, polyubiquitination,
ligase, signaling protein; NMR {Homo sapiens}
Length = 170
Score = 154 bits (390), Expect = 7e-49
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 21/133 (15%)
Query: 1 LNKNPVEGFSA-GLVDDSD--IYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMK 57
K +G + GL DD D + +W +IIGPP T+YE + + +YP PP ++
Sbjct: 47 GQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVR 106
Query: 58 FVTEIWHPNIEKNGDV----CISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLA 113
FVT+I + + V IS+L +W ++++ +L + ++
Sbjct: 107 FVTKINMNGVNSSNGVVDPRAISVLA--------------KWQNSYSIKVVLQELRRLMM 152
Query: 114 DPNDESPANVDAA 126
+
Sbjct: 153 SKENMKLPQPPEG 165
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing,
nuclear protein, UBL conjugation pathway,ubiquitin,
ligase, structural genomics; 1.69A {Homo sapiens} SCOP:
d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Length = 160
Score = 152 bits (386), Expect = 2e-48
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 22/139 (15%)
Query: 1 LNKNPVEGFSA-GLVDDSD--IYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMK 57
K +G + GL DD D + +W +IIGPP T+YE + + +YP PP ++
Sbjct: 37 GQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVR 96
Query: 58 FVTEIWHPNIEKNGDV----CISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLA 113
FVT+I + + V IS+L +W ++++ +L + ++
Sbjct: 97 FVTKINMNGVNSSNGVVDPRAISVLA--------------KWQNSYSIKVVLQELRRLMM 142
Query: 114 DPNDESPANVDAAVSQYSS 132
+ YS+
Sbjct: 143 SKENMKLPQPPEG-QCYSN 160
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase,
UBL conjugation pathway, structural genomics consortium
(SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 187
Score = 153 bits (388), Expect = 2e-48
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 15/150 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
+ K+PV A + +I +W ++ GP T YEGG++ L FP+E+P +PP + +T
Sbjct: 26 IKKDPVPYICAEPLPS-NILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMIT 84
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDE-- 118
N +C+SI + W P +V TIL ++S + +
Sbjct: 85 PNGRFKC--NTRLCLSITDFHP----------DTWNPAWSVSTILTGLLSFMVEKGPTLG 132
Query: 119 SPANVDAAVSQYSSENYHWVRRKKIFIKSM 148
S D Q + ++ + + K+F +
Sbjct: 133 SIETSDFTKRQLAVQSLAFNLKDKVFCELF 162
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC,
ligase; 1.90A {Plasmodium yoelii}
Length = 216
Score = 154 bits (390), Expect = 3e-48
Identities = 43/127 (33%), Positives = 66/127 (51%), Gaps = 15/127 (11%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
+ V+ A + D + ++W I GP T YEGG F + P +YP PPK+KFVT
Sbjct: 35 IENENVQEIDAHIKDS-NFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVT 93
Query: 61 EIWHPNI-EKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDES 119
+IWHPNI + G +C+ +L W P T+ T L+S+ ++L+DP +
Sbjct: 94 KIWHPNISSQTGAICLDVLK-------------NEWSPALTIRTALLSIQALLSDPQPDD 140
Query: 120 PANVDAA 126
P + + A
Sbjct: 141 PQDAEVA 147
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2
M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Length = 160
Score = 152 bits (385), Expect = 4e-48
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 14/123 (11%)
Query: 4 NPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIW 63
N + D D+ +++ +I P + Y+ G F + YP PPK+K T ++
Sbjct: 19 NLPKTCDISFSDPDDLLNFKL-VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVY 77
Query: 64 HPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANV 123
HPNI+ G+VC++IL E W PV T+ +I+ + + +PN E P N
Sbjct: 78 HPNIDLEGNVCLNILR-------------EDWKPVLTINSIIYGLQYLFLEPNPEDPLNK 124
Query: 124 DAA 126
+AA
Sbjct: 125 EAA 127
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular
complex, ubiquitin, ATP, conformational change,
thioester, switch, adenylation, protein turnover,
ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Length = 180
Score = 152 bits (386), Expect = 4e-48
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 16/126 (12%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
LN D D+ +++ +I P + Y+ G F + YP PPK+K T
Sbjct: 38 LNLPK--TCDISFSDPDDLLNFKL-VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCET 94
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
++HPNI+ G+V ++IL E W PV T+ +I+ + + +PN E P
Sbjct: 95 MVYHPNIDLEGNVALNILR-------------EDWKPVLTINSIIYGLQYLFLEPNPEDP 141
Query: 121 ANVDAA 126
N +AA
Sbjct: 142 LNKEAA 147
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721,
structural genomics, structural genomics consortium,
SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Length = 193
Score = 149 bits (379), Expect = 6e-47
Identities = 50/127 (39%), Positives = 66/127 (51%), Gaps = 15/127 (11%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
+ G SA +V DI++W I GP T YEGG F + P +YP PPKMKFVT
Sbjct: 57 ATHSTSHGVSAQIVGG-DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVT 115
Query: 61 EIWHPNI-EKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDES 119
+IWHPNI + G +C+ IL W P T+ T L+S+ +MLADP
Sbjct: 116 KIWHPNISSQTGAICLDILK-------------HEWSPALTIRTALLSIQAMLADPVPTD 162
Query: 120 PANVDAA 126
P + + A
Sbjct: 163 PQDAEVA 169
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1;
inhibition, hydrolase-ligase complex; 3.30A {Homo
sapiens} PDB: 4ddi_A
Length = 399
Score = 155 bits (392), Expect = 1e-46
Identities = 50/140 (35%), Positives = 76/140 (54%), Gaps = 15/140 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P SAG V D D++ W+ I+GP D+ Y+GG F +HFP +YP +PPK+ F T
Sbjct: 15 LARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT 73
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I+HPNI NG + + IL +W P T+ +L+S+ S+L DPN + P
Sbjct: 74 RIYHPNINSNGSISLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDP 120
Query: 121 ANVDAAVSQYSSENYHWVRR 140
+ A Y ++ + R
Sbjct: 121 LVPEIA-RIYKTDREKYNRI 139
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating
enzyme, protein degradatio structural proteomics in
europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB:
2bf8_A
Length = 159
Score = 144 bits (366), Expect = 2e-45
Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 15/127 (11%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
+ LVD+ + + I GPPDT YEGG ++ + P+ YP PPK++F+T
Sbjct: 23 SEETSKNQIKVDLVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFIT 81
Query: 61 EIWHPNIEK-NGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDES 119
+IWHPNI G +C+ IL ++W T+ T+L+S+ ++LA +
Sbjct: 82 KIWHPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALLAAAEPDD 128
Query: 120 PANVDAA 126
P + A
Sbjct: 129 PQDAVVA 135
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A
{Saccharomyces cerevisiae} PDB: 3tdi_C
Length = 190
Score = 145 bits (368), Expect = 3e-45
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEV----LIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKM 56
L+ P + D + + +I+ P + Y G +L F + YP+ PPK+
Sbjct: 41 LDLPPTVTLNVITSPD-SADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKV 99
Query: 57 KFVTEIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPN 116
+ +I+HPNI+ G+VC++IL E W P +++I+ ++ + +PN
Sbjct: 100 VCLKKIFHPNIDLKGNVCLNILR-------------EDWSPALDLQSIITGLLFLFLEPN 146
Query: 117 DESPANVDAA 126
P N DAA
Sbjct: 147 PNDPLNKDAA 156
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
ATP-binding, isopeptide BO ligase, nucleotide-binding,
UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
3k9p_A 1yla_A 2o25_A
Length = 201
Score = 142 bits (359), Expect = 8e-44
Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 15/127 (11%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
+ LVD+ + + I GPPDT YEGG ++ + P+ YP PPK++F+T
Sbjct: 20 SEETSKNQIKVDLVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFIT 78
Query: 61 EIWHPNI-EKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDES 119
+IWHPNI G +C+ IL ++W T+ T+L+S+ ++LA +
Sbjct: 79 KIWHPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALLAAAEPDD 125
Query: 120 PANVDAA 126
P + A
Sbjct: 126 PQDAVVA 132
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL
structural genomics consortium, SGC, ligase; HET: PG4;
2.38A {Plasmodium falciparum}
Length = 152
Score = 140 bits (354), Expect = 1e-43
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 16/128 (12%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
K + G+ L + ++V+ GP T YEGG +K H+ P +YP P + F+
Sbjct: 11 FTKLIMAGYDLELNNG-STQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMN 69
Query: 61 EIWHPNI-EKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVI-SMLADPNDE 118
++ HPN+ E +G VC+ +++ + W P++++ + + +L PN
Sbjct: 70 KLLHPNVDEASGSVCLDVIN-------------QTWTPLYSLVNVFEVFLPQLLTYPNPS 116
Query: 119 SPANVDAA 126
P N DAA
Sbjct: 117 DPLNSDAA 124
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 139 bits (351), Expect = 4e-42
Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 15/127 (11%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
+ LVD+ + + I GPPDT YEGG ++ + P+ YP PPK++F+T
Sbjct: 72 SEETSKNQIKVDLVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFIT 130
Query: 61 EIWHPNI-EKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDES 119
+IWHPNI G +C+ IL ++W T+ T+L+S+ ++LA +
Sbjct: 131 KIWHPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALLAAAEPDD 177
Query: 120 PANVDAA 126
P + A
Sbjct: 178 PQDAVVA 184
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural
genomics, structural genomics consortium; 2.10A {Homo
sapiens}
Length = 179
Score = 132 bits (335), Expect = 2e-40
Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 20/128 (15%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++ E G + ++ V GP T YEGG +K + P +YP + P + F+
Sbjct: 37 LIESKHEVTILG-----GLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMN 91
Query: 61 EIWHPNI-EKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVI-SMLADPNDE 118
+I+HPNI E +G VC+ +++ + W ++ + I S + +LA PN
Sbjct: 92 KIFHPNIDEASGTVCLDVIN-------------QTWTALYDLTNIFESFLPQLLAYPNPI 138
Query: 119 SPANVDAA 126
P N DAA
Sbjct: 139 DPLNGDAA 146
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 136 bits (344), Expect = 2e-40
Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 25/159 (15%)
Query: 1 LNKNPVEGFSAGL---VDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMK 57
L+ + S+ + D+ + +VLI GP DT Y G F+ ++FP++YP PP +
Sbjct: 88 LSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVN 147
Query: 58 FVTEIWH-----PNIEKNGDVCISILHEPGDDKYGYERAYERWLP-VHTVETILISVISM 111
T H PN+ +G VC+SIL+ E+W P + +L+SV S+
Sbjct: 148 LETTGGHSVRFNPNLYNDGKVCLSILNTWHGRP------EEKWNPQTSSFLQVLVSVQSL 201
Query: 112 L--ADPNDESPANVDAAVSQYSSEN--------YHWVRR 140
+ A+P P + + +++ +
Sbjct: 202 ILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVK 240
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI,
protein structure initiative ubiquitin conjugating
enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Length = 171
Score = 127 bits (320), Expect = 3e-38
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 17/128 (13%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
+ D + ++ V GP T YE G + H+ P +YP + P + F
Sbjct: 21 YMRLCNSTRKVYPSDT--VAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCN 78
Query: 61 EIWHPNI-EKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETIL-ISVISMLADPNDE 118
I HPN+ E++G VC+ +++ + W P++ +E I + + +L PN
Sbjct: 79 RILHPNVDERSGSVCLDVIN-------------QTWTPMYQLENIFDVFLPQLLRYPNPS 125
Query: 119 SPANVDAA 126
P NV AA
Sbjct: 126 DPLNVQAA 133
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating
enzyme, structural genomics consortium ,SGC; 1.80A {Homo
sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Length = 186
Score = 123 bits (311), Expect = 8e-37
Identities = 22/143 (15%), Positives = 50/143 (34%), Gaps = 28/143 (19%)
Query: 2 NKNPVEGFSAGLVDDSDIYKWEVLIIG-PPDTMYEGG-----------FFKAHLHFPKEY 49
+S L++D +Y W V + PD+ + + F +
Sbjct: 43 QSYKTGIYSVELIND-SLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNF 101
Query: 50 PLRPPKMKFVTEIWHPN-IEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISV 108
P PP ++ V + + G +C+ +L + G W +++E++++ +
Sbjct: 102 PFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQG------------WSSAYSIESVIMQI 149
Query: 109 ISMLADPNDESPANVDAAVSQYS 131
+ L + QY+
Sbjct: 150 NATLVKGKARVQFGANKN--QYN 170
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin
binding, protein transport; 1.40A {Homo sapiens} PDB:
3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A
1kpq_A 1m4p_A 1m4q_A 1s1q_A
Length = 146
Score = 31.4 bits (71), Expect = 0.056
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Query: 26 IIGPPDTMYEGGFFKAHLHF--PKEYPLRPPKMKFV-TEIW----HPNIEKNGDVCISIL 78
+ G Y G + + YP PP T +++ NG + + L
Sbjct: 56 LTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYL 115
Query: 79 HE 80
HE
Sbjct: 116 HE 117
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.32
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 26/85 (30%)
Query: 80 EPGDDKYGY-------ERAYERWLPVHTVETILISVIS------MLADPNDES------- 119
E G+ +Y Y E A+ V+ + S++S ++ + S
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 120 -----PAN-VDAAVSQYSSENYHWV 138
V V + NY ++
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFL 94
>3h4x_A Phosphatidylinositol-specific phospholipase C1; PI-PLC,
Ca2+-dependent, catalytic TIM barrel, disulfide-LINK
loop, hydrolase; 1.23A {Streptomyces antibioticus} PDB:
3h4w_A
Length = 339
Score = 27.9 bits (61), Expect = 1.6
Identities = 13/77 (16%), Positives = 20/77 (25%), Gaps = 10/77 (12%)
Query: 64 HPNIEKNGDVCISILHEPGDDKYGYERAYERWL----------PVHTVETILISVISMLA 113
H N N C + ++ + L P H + I +
Sbjct: 76 HSNPLGNNSNCEGAANASELRTKSRDQDFAGCLSDMRAWHDAHPGHRPILLKIEMKDGFN 135
Query: 114 DPNDESPANVDAAVSQY 130
PA DA + Q
Sbjct: 136 AKGGRGPAEFDALIRQK 152
>2ejh_A CYAN-emitting GFP-like protein, kusabira-CYAN (KCY); structural
genomics, NPPSFA, national project on protein structural
and functional analyses; HET: GYS; 1.40A {Fungia
concinna} PDB: 2zo6_A* 2eji_A* 2zo7_A*
Length = 255
Score = 26.5 bits (58), Expect = 3.6
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 31 DTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEK 69
+ +G F+ +P P + T W P+ EK
Sbjct: 138 EISLKGNCFEHKSTIEGTFPDSSPIAQNKTLGWEPSTEK 176
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase,
hemoprotein, flavoprotein, electron transfer,
oxidoreductase; HET: HEM FMN; 2.03A {Bacillus
megaterium} SCOP: c.23.5.1
Length = 191
Score = 25.8 bits (57), Expect = 5.1
Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 9/52 (17%)
Query: 82 GDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSE 133
D +E YE W + S +A + N + S S +
Sbjct: 145 ADASDDFEGTYEEWRE---------HMWSDVAAYFNLDIENSEDNKSTLSLQ 187
>3pu5_A Extracellular solute-binding protein; structural genomics, PSI-2,
protein structure initiative; 2.05A {Bordetella
parapertussis}
Length = 333
Score = 25.8 bits (57), Expect = 5.7
Identities = 5/44 (11%), Positives = 14/44 (31%)
Query: 83 DDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAA 126
+ E + + + V+SM +++A+
Sbjct: 134 ERTVAGEFGKQVFFNNLSSNVRGAEVLSMFGKIYGSGYGDIEAS 177
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase,
NOS, INOS, alternative splicing, calcium,
calmodulin-binding, FAD, FMN, heme, iron, metal-binding;
HET: FMN; 2.50A {Homo sapiens}
Length = 219
Score = 25.5 bits (56), Expect = 7.2
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 82 GDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPANVDAAVSQYSSENYHWV 138
GD+ G E A+ W + + + P + V+ + +Y V
Sbjct: 163 GDELSGQEDAFRSWAV--QTFKAACETFDVRGKQHIQIPKLYTSNVT-WDPHHYRLV 216
>3cb0_A 4-hydroxyphenylacetate 3-monooxygenase; corrin reductase, COBR,
six-stranded anti-parallel beta- barrel,
oxidoreductase; HET: FMN; 1.60A {Brucella melitensis}
Length = 173
Score = 24.9 bits (55), Expect = 9.6
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 64 HPNIEKNGDVCISILHE 80
+ +NG I+ L
Sbjct: 70 NRIFIENGVFAINTLAG 86
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.138 0.438
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,493,667
Number of extensions: 142253
Number of successful extensions: 416
Number of sequences better than 10.0: 1
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 68
Length of query: 152
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 67
Effective length of database: 4,328,508
Effective search space: 290010036
Effective search space used: 290010036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)