RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15977
(152 letters)
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 147 bits (371), Expect = 3e-47
Identities = 98/115 (85%), Positives = 111/115 (96%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
LNKNPVEGFSAGL+DD+D+Y+WEVLIIGPPDT+YEGG FKAHL FPK+YPLRPPKMKF+T
Sbjct: 11 LNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFIT 70
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADP 115
EIWHPN++KNGDVCISILHEPG+DKYGYE+ ERWLP+HTVETI+ISVISMLADP
Sbjct: 71 EIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADP 125
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 142 bits (358), Expect = 1e-44
Identities = 103/146 (70%), Positives = 123/146 (84%), Gaps = 6/146 (4%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
+ + PV+GFSAGLVDD+DIYKWEVL+IGPPDT+YEGGFFKA L FP++YP +PPKMKF++
Sbjct: 12 MRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFIS 71
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
EIWHPNI+K G+VCISILH+PGDDK+GYER ERWLPVHTVETIL+SVISML DPN ESP
Sbjct: 72 EIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESP 131
Query: 121 ANVDAAV------SQYSSENYHWVRR 140
ANVDAA +++ + VRR
Sbjct: 132 ANVDAAKMQRENYAEFKKKVAQCVRR 157
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Length = 164
Score = 121 bits (305), Expect = 1e-36
Identities = 72/126 (57%), Positives = 87/126 (69%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L K+ G AG +++I+ W+ LI GPPDT Y G F A L FPK+YPL PPK+ F
Sbjct: 15 LIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTP 74
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I HPNI NG+VCISILH PGDD YE A ERW PV +VE IL+SV+SML++PN ES
Sbjct: 75 SILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESG 134
Query: 121 ANVDAA 126
AN+DA
Sbjct: 135 ANIDAC 140
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 104 bits (259), Expect = 7e-30
Identities = 50/143 (34%), Positives = 76/143 (53%), Gaps = 14/143 (9%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L + G +A D +++KW + GP DT+YE +K L FP +YP +PP +KF T
Sbjct: 21 LLMSGDPGITAF-PDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTT 79
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
WHPN++++G++C+ IL E W + V TIL+S+ S+L +PN+ SP
Sbjct: 80 PCWHPNVDQSGNICLDILK-------------ENWTASYDVRTILLSLQSLLGEPNNASP 126
Query: 121 ANVDAAVSQYSSENYHWVRRKKI 143
N AA + Y V +K
Sbjct: 127 LNAQAADMWSNQTEYKKVLHEKY 149
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Length = 149
Score = 101 bits (253), Expect = 5e-29
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 18/146 (12%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
+ +P + V +SDI+ + +GPP T YEGG F + P EYP +PPKM+F T
Sbjct: 13 VKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDT 72
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+++HPNI + W PV T+++ LIS+ ++L P P
Sbjct: 73 KVYHPNISSVTGAICLDIL------------KNAWSPVITLKSALISLQALLQSPEPNDP 120
Query: 121 ANVDAAV------SQYSSENYHWVRR 140
+ + A ++ W R
Sbjct: 121 QDAEVAQHYLRDRESFNKTAALWTRL 146
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
Length = 136
Score = 101 bits (252), Expect = 5e-29
Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 13/121 (10%)
Query: 4 NPVEGFSAGLVDDSDI--YKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTE 61
E S GL D DI KW I+GPP + +E + + YP PPK+ F+++
Sbjct: 20 FGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISK 79
Query: 62 IWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPA 121
I P + + H W +T+ET+L+ + +A P ++
Sbjct: 80 INLPCVNPTTGEVQTDFHTL-----------RDWKRAYTMETLLLDLRKEMATPANKKLR 128
Query: 122 N 122
Sbjct: 129 Q 129
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 101 bits (252), Expect = 6e-29
Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 16/131 (12%)
Query: 1 LNKNPVEGF-SAGLVDDSDIY--KWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMK 57
K +G S GL DD D+ +W +IIGPP T+YE + + +YP PP ++
Sbjct: 17 GQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVR 76
Query: 58 FVTEIWHPNI-EKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADP- 115
FVT+I + NG V + +W ++++ +L + ++
Sbjct: 77 FVTKINMNGVNSSNGVVDPRAISVLA-----------KWQNSYSIKVVLQELRRLMMSKE 125
Query: 116 NDESPANVDAA 126
N + P +
Sbjct: 126 NMKLPQPPEGQ 136
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 L6 [TaxId: 9606]}
Length = 150
Score = 100 bits (251), Expect = 1e-28
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L K P DD+++ W ++ P Y F + FP EYP +PP +KF T
Sbjct: 12 LQKKPPPYLRNLSSDDANVLVWHA-LLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTT 70
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPN+++NG +C+ I+ W P +L ++ ++ PN P
Sbjct: 71 KIYHPNVDENGQICLPIISSEN------------WKPCTKTCQVLEALNVLVNRPNIREP 118
Query: 121 ANVDAA 126
+D A
Sbjct: 119 LRMDLA 124
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc9 [TaxId: 9606]}
Length = 156
Score = 101 bits (251), Expect = 1e-28
Identities = 44/150 (29%), Positives = 67/150 (44%), Gaps = 21/150 (14%)
Query: 1 LNKNPVEGFSAGLVDD----SDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKM 56
K+ GF A + ++ WE I G T +EGG FK + F +YP PPK
Sbjct: 14 WRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKC 73
Query: 57 KFVTEIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPN 116
KF ++HPN+ +G V +SIL E D W P T++ IL+ + +L +PN
Sbjct: 74 KFEPPLFHPNVYPSGTVSLSILEEDKD-----------WRPAITIKQILLGIQELLNEPN 122
Query: 117 DESPANVDAAV------SQYSSENYHWVRR 140
+ PA +A +Y ++
Sbjct: 123 IQDPAQAEAYTIYCQNRVEYEKRVRAQAKK 152
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch7 [TaxId: 9606]}
Length = 144
Score = 99.8 bits (248), Expect = 2e-28
Identities = 38/126 (30%), Positives = 68/126 (53%), Gaps = 13/126 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
+ K ++ F VD++++ W+ +I P + Y+ G F+ ++FP EYP +PPK+ F T
Sbjct: 11 IRKCGMKNFRNIQVDEANLLTWQG-LIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKT 69
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPNI++ G VC+ ++ W P + ++ S+I+++ DP E P
Sbjct: 70 KIYHPNIDEKGQVCLPVISAEN------------WKPATKTDQVIQSLIALVNDPQPEHP 117
Query: 121 ANVDAA 126
D A
Sbjct: 118 LRADLA 123
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:
4932]}
Length = 153
Score = 99.8 bits (248), Expect = 4e-28
Identities = 50/126 (39%), Positives = 74/126 (58%), Gaps = 14/126 (11%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
+ ++ G SA + D ++ W +IIGP DT YE G F+ L F +EYP +PP +KF++
Sbjct: 15 MKEDAPPGVSASPLPD-NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLS 73
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
E++HPN+ NG++C+ IL W P + V +IL S+ S+ DPN SP
Sbjct: 74 EMFHPNVYANGEICLDILQNR-------------WTPTYDVASILTSIQSLFNDPNPASP 120
Query: 121 ANVDAA 126
ANV+AA
Sbjct: 121 ANVEAA 126
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 97.4 bits (242), Expect = 9e-28
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 16/116 (13%)
Query: 1 LNKNPVEGFSAGLV-DDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFV 59
L +P G + + I +W V + G P T+YEG F+ F YP P++ F
Sbjct: 15 LQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFT 74
Query: 60 TEIW--HPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLA 113
E HP++ NG +C+SIL E W P +V+++ +S+ISML+
Sbjct: 75 GENIPVHPHVYSNGHICLSILT-------------EDWSPALSVQSVCLSIISMLS 117
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC
{Caenorhabditis elegans, E2 2 [TaxId: 6239]}
Length = 147
Score = 98.3 bits (244), Expect = 1e-27
Identities = 51/146 (34%), Positives = 78/146 (53%), Gaps = 20/146 (13%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P SAG V D D++ W+ I+GPP++ Y+GG F +HFP +YP +PPK+ F T
Sbjct: 13 LGRDPPAQCSAGPVGD-DLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTT 71
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I+HPNI NG +C+ IL W P T+ +L+S+ S+L DPN + P
Sbjct: 72 RIYHPNINSNGSICLDILRSQ-------------WSPALTISKVLLSICSLLCDPNPDDP 118
Query: 121 ANVDAAV------SQYSSENYHWVRR 140
+ A +Y+ W ++
Sbjct: 119 LVPEIARIYKTDRERYNQLAREWTQK 144
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 98.3 bits (244), Expect = 1e-27
Identities = 38/126 (30%), Positives = 70/126 (55%), Gaps = 11/126 (8%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L +N +G +A V + D+ +WEV I G +++++G F+ +HF EY PP +KF+T
Sbjct: 16 LKENNYKGITAKPVSE-DMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFIT 74
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+HPN++ + + E+W +T+ +IL+++ ML++P E+P
Sbjct: 75 IPFHPNVDPHTGQPC----------IDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENP 124
Query: 121 ANVDAA 126
N++AA
Sbjct: 125 VNLEAA 130
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch10 [TaxId: 9606]}
Length = 146
Score = 96.0 bits (238), Expect = 8e-27
Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 14/126 (11%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L + +G SA D +++KW I G T+YE +K L FP YP P +KF+T
Sbjct: 13 LMMSGDKGISAFPESD-NLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLT 71
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+HPN++ G++ + IL E+W ++ V TIL+S+ S+L +PN +SP
Sbjct: 72 PCYHPNVDTQGNISLDILK-------------EKWSALYDVRTILLSIQSLLGEPNIDSP 118
Query: 121 ANVDAA 126
N AA
Sbjct: 119 LNTHAA 124
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch8 [TaxId: 9606]}
Length = 148
Score = 96.0 bits (238), Expect = 8e-27
Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 20/146 (13%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
+ +P SAG D +IY+W I+GPP ++YEGG F + F +YP +PPK+ F T
Sbjct: 14 ITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRT 72
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I+H NI G +C+ IL + W P T+ +L+S+ S+L D N P
Sbjct: 73 RIYHCNINSQGVICLDILKDN-------------WSPALTISKVLLSICSLLTDCNPADP 119
Query: 121 ANVDAAVS------QYSSENYHWVRR 140
A ++ W +R
Sbjct: 120 LVGSIATQYMTNRAEHDRMARQWTKR 145
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc13 [TaxId: 9606]}
Length = 149
Score = 95.6 bits (237), Expect = 1e-26
Identities = 49/146 (33%), Positives = 76/146 (52%), Gaps = 20/146 (13%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L PV G A D+S+ + V+I GP D+ +EGG FK L P+EYP+ PK++F+T
Sbjct: 14 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 72
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPN++K G +C+ IL + W P + T+L+S+ ++L+ PN + P
Sbjct: 73 KIYHPNVDKLGRICLDILKDK-------------WSPALQIRTVLLSIQALLSAPNPDDP 119
Query: 121 ANVDAAV------SQYSSENYHWVRR 140
D A +Q W R
Sbjct: 120 LANDVAEQWKTNEAQAIETARAWTRL 145
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC
{Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:
6239]}
Length = 149
Score = 93.3 bits (231), Expect = 9e-26
Identities = 48/126 (38%), Positives = 71/126 (56%), Gaps = 14/126 (11%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L ++P G S +D +I WE +I GP +T +E G FK L F +EYP +PP +KF++
Sbjct: 15 LQEDPPAGVSGAPTED-NILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFIS 73
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+++HPN+ +G +C+ IL W P + V IL S+ S+L +PN SP
Sbjct: 74 KMFHPNVYADGSICLDILQNR-------------WSPTYDVAAILTSIQSLLDEPNPNSP 120
Query: 121 ANVDAA 126
AN AA
Sbjct: 121 ANSLAA 126
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 J2 [TaxId: 9606]}
Length = 157
Score = 93.3 bits (231), Expect = 1e-25
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 15/148 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
+ K+PV A + +I +W ++ GP T YEGG++ L FP+E+P +PP + +T
Sbjct: 13 IKKDPVPYICAEPLPS-NILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMIT 71
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPN--DE 118
N +C+SI + W P +V TIL ++S + +
Sbjct: 72 PNGRFKC--NTRLCLSITDFHP----------DTWNPAWSVSTILTGLLSFMVEKGPTLG 119
Query: 119 SPANVDAAVSQYSSENYHWVRRKKIFIK 146
S D Q + ++ + + K+F +
Sbjct: 120 SIETSDFTKRQLAVQSLAFNLKDKVFCE 147
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Length = 152
Score = 92.9 bits (230), Expect = 2e-25
Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 20/146 (13%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L +PV G +A DD ++ ++V I GP + YE G F+ L+ P +YP+ PK++F+T
Sbjct: 15 LVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT 73
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPNI++ G +C+ +L W P + T+L+S+ ++LA PN P
Sbjct: 74 KIYHPNIDRLGRICLDVLKTN-------------WSPALQIRTVLLSIQALLASPNPNDP 120
Query: 121 ANVDAAV------SQYSSENYHWVRR 140
D A ++ W +
Sbjct: 121 LANDVAEDWIKNEQGAKAKAREWTKL 146
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
E2 domain {Toxoplasma gondii [TaxId: 5811]}
Length = 161
Score = 93.0 bits (230), Expect = 2e-25
Identities = 50/127 (39%), Positives = 66/127 (51%), Gaps = 15/127 (11%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
+ G SA +V DI++W I GP T YEGG F + P +YP PPKMKFVT
Sbjct: 26 ATHSTSHGVSAQIVGG-DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVT 84
Query: 61 EIWHPNI-EKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDES 119
+IWHPNI + G +C+ IL W P T+ T L+S+ +MLADP
Sbjct: 85 KIWHPNISSQTGAICLDILK-------------HEWSPALTIRTALLSIQAMLADPVPTD 131
Query: 120 PANVDAA 126
P + + A
Sbjct: 132 PQDAEVA 138
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 M [TaxId: 9606]}
Length = 157
Score = 92.4 bits (229), Expect = 2e-25
Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 22/149 (14%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
LN D D+ +++ +I P + Y+ G F + YP PPK+K T
Sbjct: 15 LNLPK--TCDISFSDPDDLLNFKL-VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCET 71
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
++HPNI+ G+VC++IL E W PV T+ +I+ + + +PN E P
Sbjct: 72 MVYHPNIDLEGNVCLNILR-------------EDWKPVLTINSIIYGLQYLFLEPNPEDP 118
Query: 121 ANVDAAV------SQYSSENYHWVRRKKI 143
N +AA + +R I
Sbjct: 119 LNKEAAEVLQNNRRLFEQNVQRSMRGGYI 147
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme,
E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Length = 109
Score = 90.1 bits (223), Expect = 6e-25
Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
NP + V ++I W V +G +T+Y +K + FP +YPL+PP + F+
Sbjct: 10 FLNNPPINCTLD-VHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQ 68
Query: 61 EI-WHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLA 113
+ H ++ NGD+C+S+L + + P ++ +++S+ISML+
Sbjct: 69 KPPKHTHVYSNGDICLSLLG-------------DDYNPSLSISGLVLSIISMLS 109
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa,
E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 85.6 bits (211), Expect = 1e-22
Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 15/125 (12%)
Query: 3 KNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEI 62
+ LVD+ + + I GPPDT YEGG ++ + P+ YP PPK++F+T+I
Sbjct: 21 ETSKNQIKVDLVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKI 79
Query: 63 WHPNI-EKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESPA 121
WHPNI G +C+ IL + W T+ T+L+S+ ++LA + P
Sbjct: 80 WHPNISSVTGAICLDILKDQ-------------WAAAMTLRTVLLSLQALLAAAEPDDPQ 126
Query: 122 NVDAA 126
+ A
Sbjct: 127 DAVVA 131
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC
{Human(Homo sapiens), E2 S [TaxId: 9606]}
Length = 151
Score = 85.2 bits (210), Expect = 2e-22
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 14/126 (11%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L +P +G ++ D+ +V I GP T Y GG F+ L K++P PPK F+T
Sbjct: 18 LTADPPDGIKV-FPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLT 76
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
+I+HPN+ NG++C+++L W + +L+++ +L PN ES
Sbjct: 77 KIFHPNVGANGEICVNVLK-------------RDWTAELGIRHVLLTIKCLLIHPNPESA 123
Query: 121 ANVDAA 126
N +A
Sbjct: 124 LNEEAG 129
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 85.2 bits (210), Expect = 2e-22
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 15 DDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVC 74
+ ++ V GP T YEGG +K + P +YP + P + F+ +I+HPNI++
Sbjct: 24 ILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTV 83
Query: 75 ISILHEPGDDKYGYERAYERWLPVHTVETILISVIS-MLADPNDESPANVDAA 126
+ + W ++ + I S + +LA PN P N DAA
Sbjct: 84 CLDVI------------NQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAA 124
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 T [TaxId: 9606]}
Length = 154
Score = 84.1 bits (207), Expect = 5e-22
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 16/146 (10%)
Query: 1 LNKNPVEGFSAGLVDDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVT 60
L P G + D + I+G +T YE G FK + P+ YP PP+++F+T
Sbjct: 14 LATEPPPGITCW-QDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLT 72
Query: 61 EIWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPNDESP 120
I+HPNI+ G +C+ +L P W P + T+L S+ ++++PN + P
Sbjct: 73 PIYHPNIDSAGRICLDVLKLPPKG---------AWRPSLNIATVLTSIQLLMSEPNPDDP 123
Query: 121 ANVDAAVS------QYSSENYHWVRR 140
D + + W +
Sbjct: 124 LMADISSEFKYNKPAFLKNARQWTEK 149
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC
{Leishmania major [TaxId: 5664]}
Length = 158
Score = 81.3 bits (200), Expect = 5e-21
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 13/113 (11%)
Query: 15 DDSDIYKWEVLIIGPPDTMYEGGFFKAHLHFPKEYPLRPPKMKFVTEIWHPNIEKNGDVC 74
+ ++ V GP T YE G + H+ P +YP + P + F I HPN+
Sbjct: 21 PSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNV------- 73
Query: 75 ISILHEPGDDKYGYERAYERWLPVHTVET-ILISVISMLADPNDESPANVDAA 126
+ + + W P++ +E + + +L PN P NV AA
Sbjct: 74 -----DERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAA 121
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 73.0 bits (178), Expect = 1e-17
Identities = 22/153 (14%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 1 LNKNPVEG---FSAGLVDDSDIYKWEVLIIG-PPDTMYEGG-----------FFKAHLHF 45
+ ++ +S L++D +Y W V + PD+ + + F
Sbjct: 16 IYRSQSYKTGIYSVELIND-SLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSF 74
Query: 46 PKEYPLRPPKMKFVTEIW-HPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETI 104
+P PP ++ V + + G +C+ +L + + W +++E++
Sbjct: 75 KDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTK------------QGWSSAYSIESV 122
Query: 105 LISVISMLADPN--DESPANVDAAVSQYSSENY 135
++ + + L + AN + + ++Y
Sbjct: 123 IMQINATLVKGKARVQFGANKNQYNLARAQQSY 155
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 72.3 bits (177), Expect = 1e-17
Identities = 17/110 (15%), Positives = 32/110 (29%), Gaps = 20/110 (18%)
Query: 14 VDDSDIYKWEVLIIGPPDTMYEGGFFKAH--LHFPKEYPLRPPKMKFVTE-----IWHPN 66
V + + + + G Y G + L YP PP +
Sbjct: 41 VFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKH 100
Query: 67 IEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPN 116
++ NG + + LH E P + ++ +I + D
Sbjct: 101 VDANGKIYLPYLH-------------EWKHPQSDLLGLIQVMIVVFGDEP 137
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 152
Score = 61.2 bits (148), Expect = 2e-13
Identities = 19/118 (16%), Positives = 36/118 (30%), Gaps = 27/118 (22%)
Query: 14 VDDSDIYKWEVLIIGPPDTMYEGG---FFKAHLHFPKEYPLRPPKMKFVTE--------- 61
+ + I G T +G + P YP++PP + E
Sbjct: 46 THSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISS 105
Query: 62 --IWHPNIEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADPND 117
I+ NG + + ILH + ++ ++S+L +P
Sbjct: 106 SLPIQEYIDSNGWIALPILH-------------CWDPAAMNLIMVVQELMSLLHEPPQ 150
>d1c8da_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
protein {Canine parvovirus [TaxId: 10788]}
Length = 548
Score = 28.0 bits (62), Expect = 0.52
Identities = 16/136 (11%), Positives = 34/136 (25%), Gaps = 17/136 (12%)
Query: 7 EGFSAGLVDDSDIYKWEVLIIGPPDTM----------YEGGFFKAHLHFPKEYPLRPPKM 56
E F+ D+ Y I + + K +++ + P
Sbjct: 360 ERFTYIAHQDTGRYPEGDWIQNINFNLPVTNDNVLLPTDPIGGKTGINYTNIFNTYGPLT 419
Query: 57 KFVTEIWHPN-IEKNGDVCISILHEPGDDKYGYERAYERWLPVHTVETILISVISMLADP 115
+ + NG + D K + + + V L +
Sbjct: 420 AL----NNVPPVYPNGQIWDKEFDT--DLKPRLHVNAPFVCQNNCPGQLFVKVAPNLTNQ 473
Query: 116 NDESPANVDAAVSQYS 131
D + + + YS
Sbjct: 474 YDPDASANMSRIVTYS 489
>d1fyhb2 b.1.2.1 (B:110-223) Interferon-gamma receptor alpha chain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 23.7 bits (51), Expect = 8.6
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 10/50 (20%)
Query: 53 PPKMKFVTE-------IWHPNIEKNGDVCISILHEPGDDKYGYERAYERW 95
PPK+ E I+HP++ NGD + Y R Y +
Sbjct: 3 PPKLDIRKEEKQIMIDIFHPSVFVNGDEQEVDY---DPETTCYIRVYNVY 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.138 0.438
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 627,921
Number of extensions: 29195
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 37
Length of query: 152
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 74
Effective length of database: 1,336,656
Effective search space: 98912544
Effective search space used: 98912544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.1 bits)