BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15979
(152 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 20 LMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
L I KV SD GNY+C TN + H+ G P P I R+
Sbjct: 158 LYIAKVEKSDVGNYTCVVTNTVTNHKVL----GPPTPLILRN 195
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 20 LMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
L I KV SD GNY+C TN + H+ G P P I R+
Sbjct: 159 LYIAKVEKSDVGNYTCVVTNTVTNHKVL----GPPTPLILRN 196
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH--RAYLELSGKPN 55
+E E+ I+ +GS L +R ++ SD G Y C ATN G+ +A+L++ +P+
Sbjct: 45 IEENEKYIL--KGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPH 97
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 11 METRGSR--HTLMIRKVVASDFGNYSCEATNPMGKHR--AYLEL 50
+E +G +L I+ V SD G Y CEA + +G H+ YL++
Sbjct: 148 IEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH--RAYLEL 50
+E E+ I+ +GS L +R ++ SD G Y C ATN G+ +A+L++
Sbjct: 235 IEENEKYIL--KGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
Score = 29.3 bits (64), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR 45
++ +T+R +++ G R L I D G Y C+AT+ G+ +
Sbjct: 44 KIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQ 87
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH--RAYLEL 50
+E E+ I+ +GS L +R ++ SD G Y C ATN G+ +A+L++
Sbjct: 139 IEENEKYIL--KGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 32.7 bits (73), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
H+L+I V + D G Y+C ATN G++ LEL
Sbjct: 66 HSLIIEPVTSRDAGIYTCIATNRAGQNSFSLEL 98
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
L T+ R + T + T I V ASD GNYS N GK A L+
Sbjct: 49 LSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLT 97
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
L T+ R + T + T I V ASD GNYS N GK A L+
Sbjct: 55 LSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLT 103
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 32/96 (33%)
Query: 11 METRGSRHTLMIRKVVASDFGNYSCEATNPMGK--------------------------- 43
M + G HTL + D G Y+C ATN +G+
Sbjct: 56 MSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYG 115
Query: 44 -----HRAYLELSGKPNPAIFRSHPQGRLPNSYNIT 74
R ++ G+P PA+ H Q L NS NIT
Sbjct: 116 AVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENIT 151
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 31.6 bits (70), Expect = 0.17, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Query: 34 SCEATNPMGKHRAY-----LELSGKPNPAIFRSHPQGRLPNSYNITW---MVSSYTPLEE 85
+C A +P R + +EL GKP+ A F P G Y W M SSYT LEE
Sbjct: 52 NCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGW--GGYVYPWIEAMSSSYTWLEE 109
Query: 86 FKIK 89
++K
Sbjct: 110 IRLK 113
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 11 METRGSR--HTLMIRKVVASDFGNYSCEATNPMGKHR--AYLELSGKP 54
+E +G +L I+ V SD G Y CEA + +G H+ YL++ P
Sbjct: 54 IEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAP 101
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 13 TRGSRHTLMIRKVVASDFGNYSCEATNPMG 42
+ G + L I +DFG Y+C ATN +G
Sbjct: 153 STGRKMILEIAPTSDNDFGRYNCTATNHIG 182
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 11 METRGSR--HTLMIRKVVASDFGNYSCEATNPMGKHR--AYLELSGKP 54
+E +G +L I+ V SD G Y CEA + +G H+ YL++ P
Sbjct: 54 IEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAP 101
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 13 TRGSRHTLMIRKVVASDFGNYSCEATNPMG 42
+ G + L I +DFG Y+C ATN +G
Sbjct: 153 STGRKMILEIAPTSDNDFGRYNCTATNHIG 182
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 19/92 (20%)
Query: 20 LMIRKVVASDFGNYSCEATNPMG-------KHRAYLELSGKPNPAIFRSHPQGRLP-NSY 71
L I + ASD GNYSC AT+ M A L L+ + + +F + R P +Y
Sbjct: 159 LYIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAE-DTRLFAPSIKARFPAETY 217
Query: 72 NITWMVSSYTPLEEF-------KIKYRKIPGN 96
+V LE F +IK+RK+ G+
Sbjct: 218 A---LVGQQVTLECFAFGNPVPRIKWRKVDGS 246
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
Query: 15 GSRHTLMIRKVV------ASDFGNYSCEATNPMG 42
GSRH L+ +V A D G Y C A+NP+G
Sbjct: 52 GSRHQLVGGNLVIMNPTKAQDAGVYQCLASNPVG 85
>pdb|2Y23|A Chain A, Crystal Structure Of The Myomesin Domains My9-My11
Length = 312
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 4 ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYL 48
E + R +E++G++ + + + D G YSC+ T+ G +YL
Sbjct: 44 EDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYL 88
>pdb|1GMM|A Chain A, Carbohydrate Binding Module Cbm6 From Xylanase U
Clostridium Thermocellum
pdb|1UXX|X Chain X, Cbm6ct From Clostridium Thermocellum In Complex With
Xylopentaose
Length = 133
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 19 TLMIRKVVASDFG--NY---SCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLP 68
TL+ VAS G NY SC TN G+H YL SG N F G P
Sbjct: 79 TLIGTLTVASTGGWNNYEEKSCSITNTTGQHDLYLVFSGPVNIDYFIFDSNGVNP 133
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 30.4 bits (67), Expect = 0.42, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKPNPAIFRSHP 63
TL I + S G Y+C A+NP+G A L LS P F P
Sbjct: 158 TLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKP 204
Score = 30.0 bits (66), Expect = 0.53, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG 42
+L + M+ + + +L+I KV SD G Y+C+A N +G
Sbjct: 45 KLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVG 85
Score = 29.3 bits (64), Expect = 0.79, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRL 67
TL + KV D G Y+C A+N GK +L + P + R+
Sbjct: 254 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRI 302
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex
With Obscurin- Like 1
Length = 107
Score = 30.0 bits (66), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATN 39
+L +ER G+ H L++ + +D G Y C A N
Sbjct: 53 QLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 90
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 30.0 bits (66), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
TL + KV D G Y+C A+N GK +L + P +
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPPRFIK 103
>pdb|2K1M|A Chain A, 3d Nmr Structure Of Domain Cc0 Of Cardiac Myosin Binding
Protein C (Mybpc)
Length = 95
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 11 METRGSRHTLMIRKVVASDFGNYSCEA 37
+ T G+RHTL +R+V +D G+Y+ A
Sbjct: 56 LATEGTRHTLTVREVGPADQGSYAVIA 82
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 14 RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
G ++L+I + D G YS ATN +G+ + EL
Sbjct: 155 EGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
>pdb|3LD8|B Chain B, Structure Of Jmjd6 And Fab Fragments
pdb|3LDB|B Chain B, Structure Of Jmjd6 Complexd With Alpha-Ketoglutarate And
Fab Fragment
Length = 220
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 15 GSRHTLMIRKVVASDFGNYSCE--ATNP----MGKHRAYLELSGKPNPAIFRSHPQGRLP 68
G+ +TL I V A D G Y C+ +NP G KP +IF +
Sbjct: 74 GTDYTLTITSVQAEDMGQYFCQQGISNPYTFGAGTKLEIKRADAKPTVSIFPPSSEQLGT 133
Query: 69 NSYNITWMVSSYTPLEEFKIKYRKIPGNE 97
S + V+++ P ++ +K+ K+ G+E
Sbjct: 134 GSATLVCFVNNFYP-KDINVKW-KVDGSE 160
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATN 39
R + +T G+ L I K ASD GNYSC AT+
Sbjct: 151 RFVSQTTGN---LYIAKTEASDLGNYSCFATS 179
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATN 39
+L +ER G+ H L++ + +D G Y C A N
Sbjct: 54 QLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 91
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 14 RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
G ++L+I + D G YS ATN +G+ + EL
Sbjct: 155 EGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
>pdb|2EDQ|A Chain A, Solution Structure Of The Ig-Like Domain (3713-3806) Of
Human Obscurin
Length = 107
Score = 30.0 bits (66), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIF 59
L +R + GSR L IR + D G YSC G+ R L+ + PA F
Sbjct: 47 LRDGDRHSLRQDGSRCELQIRGLAVVDAGEYSC----VCGQERTSATLTVRALPARF 99
>pdb|4HPY|L Chain L, Crystal Structure Of Rv144-elicited Antibody Ch59 In
Complex With V2 Peptide
Length = 215
Score = 30.0 bits (66), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY-----LELSGKPNPA---- 57
ER + G+ TL I D +Y C +T+ G HR + L + G+P A
Sbjct: 60 ERFSGSSSGTMATLTISGAQVEDEADYYCYSTDSSGNHRVFGGGTKLTVLGQPKAAPSVT 119
Query: 58 IFRSHPQGRLPNSYNITWMVSSYTP 82
+F + N + ++S + P
Sbjct: 120 LFPPSSEELQANKATLVCLISDFYP 144
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
TL + KV D G Y+C A+N GK +L + P +
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIK 103
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
F17r Mutant Complex
Length = 109
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATN 39
+L +ER G+ H L++ + +D G Y C A N
Sbjct: 54 QLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 91
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 29.6 bits (65), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
+LE +E+ + L ++ + D G Y C+ N G+ +Y EL
Sbjct: 42 QLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAEL 90
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 29.3 bits (64), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR 45
++ +T+R +++ G R L I D G Y C+AT+ G+ +
Sbjct: 40 KIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQ 83
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK 43
++ +T+R +++ G R L I D G Y C+AT+ G+
Sbjct: 42 KIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQ 83
>pdb|4FS0|A Chain A, Crystal Structure Of Mutant F136d Of Mouse Nectin-2
Extracellular Fragment D1-D2
Length = 225
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 19 TLMIRKVVASDFGNYSCE-ATNPMGKHRA--YLELSGKPN 55
TL R + D GNY+CE AT+P G R +L + +P
Sbjct: 84 TLAFRGLRVEDEGNYTCEFATDPNGTRRGVTWLRVIAQPE 123
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHR--AYLELSGKPN 55
TL V+ SD G Y+C TN G AYL +S P+
Sbjct: 63 TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSSGPS 101
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKP 54
+ TT++ I L IR V D G Y+C A N +G H A+L + P
Sbjct: 171 VNTTDKEI-------EVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAP 217
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKP 54
+ TT++ I L IR V D G Y+C A N +G H A+L + P
Sbjct: 171 VNTTDKEI-------EVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAP 217
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKP 54
+ TT++ I L IR V D G Y+C A N +G H A+L + P
Sbjct: 170 VNTTDKEI-------EVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAP 216
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKP 54
+ TT++ I L IR V D G Y+C A N +G H A+L + P
Sbjct: 171 VNTTDKEI-------EVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAP 217
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKP 54
+ TT++ I L IR V D G Y+C A N +G H A+L + P
Sbjct: 169 VNTTDKEI-------EVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAP 215
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 4 ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
+ + I+ +G H+L+ V ASD G Y+C A N G+ ++L
Sbjct: 49 DDLHKMIVSEKG-LHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95
>pdb|4DKD|C Chain C, Crystal Structure Of Human Interleukin-34 Bound To Human
Csf-1r
Length = 292
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKH 44
TL + +V GNYSC A+N GKH
Sbjct: 246 TLNLDQVDFQHAGNYSCVASNVQGKH 271
>pdb|2EDH|A Chain A, Solution Structure Of The Pdz Domain (3614- 3713 ) From
Human Obscurin
Length = 113
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPA 57
L +R + G+R L IR +VA D G Y C GK R L+ + P+
Sbjct: 58 LRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMPS 108
>pdb|2LU7|A Chain A, Solution Nmr Structure Of Ig Like Domain (1277-1357) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578d
Length = 84
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEA 37
RL + R +E G+R L ++ + D G Y C+A
Sbjct: 35 RLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDA 70
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 9 RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG 42
RI E +G H L+I V D Y ATN G
Sbjct: 53 RIQEFKGGYHQLIIASVTDDDATVYQVRATNQGG 86
>pdb|2L7J|A Chain A, Solution Structure Of The Third Immunoglobulin-Like
Domain Of Nectin-1
Length = 95
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 19 TLMIRK-VVASDFGNYSCEATNPMGKHRAYLELS 51
TL R + S G Y CEATNP+G +E++
Sbjct: 59 TLFFRGPITYSLAGTYICEATNPIGTRSGQVEVN 92
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169
Of Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 9 RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG 42
RI E +G H L+I V D Y ATN G
Sbjct: 53 RIQEFKGGYHQLIIASVTDDDATVYQVRATNQGG 86
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 9 RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG 42
RI E +G H L+I V D Y ATN G
Sbjct: 51 RIQEFKGGYHQLIIASVTDDDATVYQVRATNQGG 84
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 27.7 bits (60), Expect = 2.5, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHR 45
H L I +V D GNY+ TNP+ K +
Sbjct: 381 HVLTIMEVSERDTGNYTVILTNPISKEK 408
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHR 45
H L I +V D GNY+ TNP+ K +
Sbjct: 251 HVLTIMEVSERDTGNYTVILTNPISKEK 278
>pdb|1KNO|A Chain A, Crystal Structure Of The Complex Of A Catalytic Antibody
Fab With A Transition State Analog: Structural
Similarities In Esterase-Like Abzymes
pdb|1KNO|C Chain C, Crystal Structure Of The Complex Of A Catalytic Antibody
Fab With A Transition State Analog: Structural
Similarities In Esterase-Like Abzymes
pdb|1KNO|E Chain E, Crystal Structure Of The Complex Of A Catalytic Antibody
Fab With A Transition State Analog: Structural
Similarities In Esterase-Like Abzymes
Length = 214
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 15 GSRHTLMIRKVVASDFGNYSC--EATNPM----GKHRAYLELSGKPNPAIFRSHPQGRLP 68
GS ++L I + + DF +Y C A++P G L P +IF +
Sbjct: 68 GSDYSLTISSLESEDFADYYCLQYASSPYTFGGGTKLEILRADAAPTVSIFPPSSEQLTS 127
Query: 69 NSYNITWMVSSYTPLEEFKIKYRKIPGNE 97
++ ++++ P ++ +K+ KI G+E
Sbjct: 128 GGASVVCFLNNFYP-KDINVKW-KIDGSE 154
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNP 40
R + +T G+ L I V ASD GNYSC ++P
Sbjct: 59 RFVSQTNGN---LYIANVEASDKGNYSCFVSSP 88
>pdb|3ALP|A Chain A, Cell Adhesion Protein
pdb|3ALP|B Chain B, Cell Adhesion Protein
pdb|3U83|A Chain A, Crystal Structure Of Nectin-1
Length = 331
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 31 GNYSCEATNPMGKHRAYLEL 50
G Y CEATNP+G +E+
Sbjct: 297 GTYICEATNPIGTRSGQVEV 316
>pdb|3U82|B Chain B, Binding Of Herpes Simplex Virus Glycoprotein D To Nectin-1
Exploits Host Cell Adhesion
Length = 317
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 31 GNYSCEATNPMGKHRAYLEL 50
G Y CEATNP+G +E+
Sbjct: 283 GTYICEATNPIGTRSGQVEV 302
>pdb|4FMF|A Chain A, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|B Chain B, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|C Chain C, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|D Chain D, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
Length = 313
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 31 GNYSCEATNPMGKHRAYLELS 51
G Y CEATNP+G +E++
Sbjct: 282 GTYICEATNPIGTRSGQVEVN 302
>pdb|3SKU|E Chain E, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|D Chain D, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|F Chain F, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
Length = 319
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 31 GNYSCEATNPMGKHRAYLELS 51
G Y CEATNP+G +E++
Sbjct: 282 GTYICEATNPIGTRSGQVEVN 302
>pdb|4FMK|A Chain A, Crystal Structure Of Mouse Nectin-2 Extracellular Fragment
D1-D2
pdb|4FN0|A Chain A, Crystal Structure Of Mouse Nectin-2 Extracellular Fragment
D1-D2, 2nd Crystal Form
pdb|4FN0|B Chain B, Crystal Structure Of Mouse Nectin-2 Extracellular Fragment
D1-D2, 2nd Crystal Form
pdb|4FN0|C Chain C, Crystal Structure Of Mouse Nectin-2 Extracellular Fragment
D1-D2, 2nd Crystal Form
Length = 225
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 19 TLMIRKVVASDFGNYSCE-ATNPMGKHRA--YLELSGKPN 55
TL R + D GNY+CE AT P G R +L + +P
Sbjct: 84 TLAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPE 123
>pdb|1RIH|L Chain L, Crystal Structure Of Fab 14f7, A Unique Anti-Tumor
Antibody Specific For N-Glycolyl Gm3
Length = 214
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 15 GSRHTLMIRKVVASDFGNYSCEATN--PM----GKHRAYLELSGKPNPAIFRSHPQGRLP 68
G+ TL I V DFG Y C+ +N P+ G P +IF +
Sbjct: 68 GTDFTLSISSVETEDFGMYFCQQSNRWPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTS 127
Query: 69 NSYNITWMVSSYTPLEEFKIKYRKIPGNE 97
++ ++++ P ++ +K+ KI G+E
Sbjct: 128 GGASVVCFLNNFYP-KDINVKW-KIDGSE 154
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homo1
Length = 118
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 1 MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH--RAYLEL 50
+ + T + RI + L IR D G Y+C A+ P G+ AY+E+
Sbjct: 47 VLVSTQDSRIKQLE--NGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEV 96
>pdb|1FH5|L Chain L, Crystal Structure Of The Fab Fragment Of The Monoclonal
Antibody Mak33
Length = 213
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 15 GSRHTLMIRKVVASDFGNYSCEATNPM------GKHRAYLELSGKPNPAIFRSHPQGRLP 68
G+ TL I V DFG Y C+ +N G P +IF +
Sbjct: 68 GTDFTLSINSVETEDFGMYYCQQSNSWPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTS 127
Query: 69 NSYNITWMVSSYTPLEEFKIKYRKIPGNE 97
++ ++++ P ++ +K+ KI G+E
Sbjct: 128 GGASVVCFLNNFYP-KDINVKW-KIDGSE 154
>pdb|1OPG|L Chain L, Opg2 Fab Fragment
pdb|1BM3|L Chain L, Immunoglobulin Opg2 Fab-Peptide Complex
Length = 214
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 15 GSRHTLMIRKVVASDFGNYSCEATNPM------GKHRAYLELSGKPNPAIFRSHPQGRLP 68
G+ TL I V DFG Y C+ +N G P +IF +
Sbjct: 68 GTDFTLSINSVETEDFGMYFCQQSNSWPLTFGGGSKLEIKRADAAPTVSIFPPSSEQLTS 127
Query: 69 NSYNITWMVSSYTPLEEFKIKYRKIPGNE 97
++ ++++ P ++ +K+ KI G+E
Sbjct: 128 GGASVVCFLNNFYP-KDINVKW-KIDGSE 154
>pdb|1QTR|A Chain A, Crystal Structure Analysis Of The Prolyl Aminopeptidase
From Serratia Marcescens
pdb|1WM1|A Chain A, Crystal Structure Of Prolyl Aminopeptidase, Complex With
Pro-tboda
pdb|1X2B|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Sar-Tboda
pdb|1X2E|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Ala-Tboda
Length = 317
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Query: 44 HRAYLELSGKPN--PAIF 59
HR Y ELSG PN PA+F
Sbjct: 25 HRIYWELSGNPNGKPAVF 42
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46
L+ TER + S L I + D G Y CE +NP+ R+
Sbjct: 150 LQLTERMTLSQNNS--ILRIDPIKREDAGEYQCEISNPVSVRRS 191
>pdb|1MLB|A Chain A, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme
pdb|1MLC|A Chain A, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme Complexed With Lysozyme
pdb|1MLC|C Chain C, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme Complexed With Lysozyme
Length = 214
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 15 GSRHTLMIRKVVASDFGNYSCEATNPM------GKHRAYLELSGKPNPAIFRSHPQGRLP 68
G+ TL I V DFG Y C+ +N G P +IF +
Sbjct: 68 GTDFTLSINSVETEDFGMYFCQQSNSWPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTS 127
Query: 69 NSYNITWMVSSYTPLEEFKIKYRKIPGNE 97
++ ++++ P ++ +K+ KI G+E
Sbjct: 128 GGASVVCFLNNFYP-KDINVKW-KIDGSE 154
>pdb|3HFM|L Chain L, Structure Of An Antibody-Antigen Complex. Crystal
Structure Of The HyHEL-10 Fab-Lysozyme Complex
Length = 214
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 15 GSRHTLMIRKVVASDFGNYSCEATNPM------GKHRAYLELSGKPNPAIFRSHPQGRLP 68
G+ TL I V DFG Y C+ +N G P +IF +
Sbjct: 68 GTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTS 127
Query: 69 NSYNITWMVSSYTPLEEFKIKYRKIPGNE 97
++ ++++ P ++ +K+ KI G+E
Sbjct: 128 GGASVVCFLNNFYP-KDINVKW-KIDGSE 154
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46
L+ TER + S L I + D G Y CE +NP+ R+
Sbjct: 150 LQLTERMTLSQNNS--ILRIDPIKREDAGEYQCEISNPVSVRRS 191
>pdb|1XGP|A Chain A, Structure For Antibody Hyhel-63 Y33a Mutant Complexed With
Hen Egg Lysozyme
pdb|1XGQ|A Chain A, Structure For Antibody Hyhel-63 Y33v Mutant Complexed With
Hen Egg Lysozyme
pdb|1XGR|A Chain A, Structure For Antibody Hyhel-63 Y33i Mutant Complexed With
Hen Egg Lysozyme
pdb|1XGT|A Chain A, Structure For Antibody Hyhel-63 Y33l Mutant Complexed With
Hen Egg Lysozyme
Length = 215
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 15 GSRHTLMIRKVVASDFGNYSCEATNPM------GKHRAYLELSGKPNPAIFRSHPQGRLP 68
G+ TL I V DFG Y C+ +N G P +IF +
Sbjct: 69 GTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTS 128
Query: 69 NSYNITWMVSSYTPLEEFKIKYRKIPGNE 97
++ ++++ P ++ +K+ KI G+E
Sbjct: 129 GGASVVCFLNNFYP-KDINVKW-KIDGSE 155
>pdb|1M71|A Chain A, Crystal Structure Of A Monoclonal Fab Specific For
Shigella Flexneri Y Lipopolysaccharide
pdb|1M7D|A Chain A, Crystal Structure Of A Monoclonal Fab Specific For
Shigella Flexneri Y Lipopolysaccharide Complexed With A
Trisaccharide
pdb|1M7I|A Chain A, Crystal Structure Of A Monoclonal Fab Specific For
Shigella Flexneri Y Lipopolysaccharide Complexed With A
Pentasaccharide
pdb|1PZ5|A Chain A, Structural Basis Of Peptide-Carbohydrate Mimicry In An
Antibody Combining Site
Length = 215
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 15 GSRHTLMIRKVVASDFGNYSCEATN--PMGKHRAYLEL---SGKPNPAIFRSHPQGRLPN 69
G+ TL I +V A D G Y C T P LE+ P +IF +
Sbjct: 73 GTDFTLKISRVEAEDLGVYFCSQTTHVPTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSG 132
Query: 70 SYNITWMVSSYTPLEEFKIKYRKIPGNE 97
++ ++++ P ++ +K+ KI G+E
Sbjct: 133 GASVVCFLNNFYP-KDINVKW-KIDGSE 158
>pdb|4F9P|D Chain D, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
pdb|4F9P|C Chain C, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
Length = 254
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 15 GSRHTLMIRKVVASDFGNYSCEATN 39
G+ TL I V DFG Y C+ +N
Sbjct: 204 GTEFTLSINSVETEDFGIYFCQQSN 228
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 29 DFGNYSCEATNPMGKH 44
DFGNY+C A N +G+
Sbjct: 87 DFGNYNCTAVNRIGQE 102
>pdb|1J1O|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant Ly50f Complexed
With Hen Egg White Lysozyme
Length = 107
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 15 GSRHTLMIRKVVASDFGNYSCEATN 39
G+ TL I V DFG Y C+ +N
Sbjct: 68 GTDFTLSINSVETEDFGMYFCQQSN 92
>pdb|1CGS|L Chain L, Local And Transmitted Conformational Changes On
Complexation Of An Anti-Sweetener Fab
pdb|2CGR|L Chain L, Local And Transmitted Conformational Changes On
Complexation Of An Anti-Sweetener Fab
pdb|1YNK|L Chain L, Identification Of Key Residues Of The Nc6.8 Fab Antibody
Fragment Binding To Synthetic Sweeteners: Crystal
Structure Of Nc6.8 Co-Crystalized With High Potency
Sweetener Compound Sc45647
pdb|1YNL|L Chain L, Identification Of Key Residues Of The Nc6.8 Fab Antibody
Fragment Binding To Synthetic Sweeterners: Crystal
Structure Of Nc6.8 Co-Crystalized With High Potency
Sweetener Compound Sc45647
Length = 219
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY-------LEL---SGKPNPAIFRSHPQ 64
G+ TL I +V A D G Y C G H Y LEL P +IF +
Sbjct: 73 GTAFTLKISRVEAEDLGVYFCS----QGTHVPYTFGGGTKLELKRADAAPTVSIFPPSSE 128
Query: 65 GRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNE 97
++ ++++ P ++ +K+ KI G+E
Sbjct: 129 QLTSGGASVVCFLNNFYP-KDINVKW-KIDGSE 159
>pdb|1DQJ|A Chain A, Crystal Structure Of The Anti-Lysozyme Antibody Hyhel-63
Complexed With Hen Egg White Lysozyme
pdb|1DQM|L Chain L, Crystal Structure Of Anti-Lysozyme Antibody
pdb|1DQQ|A Chain A, Crystal Structure Of Anti-Lysozyme Antibody Hyhel-63
pdb|1DQQ|C Chain C, Crystal Structure Of Anti-Lysozyme Antibody Hyhel-63
pdb|1NBY|A Chain A, Crystal Structure Of Hyhel-63 Complexed With Hel Mutant
K96a
pdb|1NBZ|A Chain A, Crystal Structure Of Hyhel-63 Complexed With Hel Mutant
K97a
pdb|1NDG|A Chain A, Crystal Structure Of Fab Fragment Of Antibody Hyhel-8
Complexed With Its Antigen Lysozyme
pdb|1NDM|A Chain A, Crystal Structure Of Fab Fragment Of Antibody Hyhel-26
Complexed With Lysozyme
pdb|1XGU|A Chain A, Structure For Antibody Hyhel-63 Y33f Mutant Complexed With
Hen Egg Lysozyme
Length = 214
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 15 GSRHTLMIRKVVASDFGNYSCEATNPM------GKHRAYLELSGKPNPAIFRSHPQGRLP 68
G+ TL I V DFG Y C+ +N G P +IF +
Sbjct: 68 GTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTS 127
Query: 69 NSYNITWMVSSYTPLEEFKIKYRKIPGNE 97
++ ++++ P ++ +K+ KI G+E
Sbjct: 128 GGASVVCFLNNFYP-KDINVKW-KIDGSE 154
>pdb|3A6B|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant Ln32d Complexed
With White Lysozyme
Length = 107
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 15 GSRHTLMIRKVVASDFGNYSCEATN 39
G+ TL I V DFG Y C+ +N
Sbjct: 68 GTDFTLSINSVETEDFGMYFCQQSN 92
>pdb|3A67|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant Ln31d Complexed
With White Lysozyme
Length = 107
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 15 GSRHTLMIRKVVASDFGNYSCEATN 39
G+ TL I V DFG Y C+ +N
Sbjct: 68 GTDFTLSINSVETEDFGMYFCQQSN 92
>pdb|2ZNW|A Chain A, Crystal Structure Of Scfv10 In Complex With Hen Egg
Lysozyme
pdb|2ZNW|B Chain B, Crystal Structure Of Scfv10 In Complex With Hen Egg
Lysozyme
Length = 242
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 15 GSRHTLMIRKVVASDFGNYSCEATN 39
G+ TL I V DFG Y C+ +N
Sbjct: 68 GTDFTLSINSVETEDFGMYFCQQSN 92
>pdb|3D9A|L Chain L, High Resolution Crystal Structure Structure Of Hyhel10
Fab Complexed To Hen Egg Lysozyme
Length = 213
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 15 GSRHTLMIRKVVASDFGNYSCEATN 39
G+ TL I V DFG Y C+ +N
Sbjct: 68 GTDFTLSINSVETEDFGMYFCQQSN 92
>pdb|1C08|A Chain A, Crystal Structure Of Hyhel-10 Fv-Hen Lysozyme Complex
pdb|1IC4|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant(Hd32a)-Hen
Lysozyme Complex
pdb|1IC5|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant(Hd99a)-Hen
Lysozyme Complex
pdb|1IC7|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant(Hd32a99a)-Hen
Lysozyme Complex
pdb|1UA6|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant Sfsf Complexed
With Hen Egg White Lysozyme Complex
pdb|1UAC|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant Sfsf Complexed
With Turkey White Lysozyme
pdb|2DQC|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant(Hy33f) Complexed
With Hen Egg Lysozyme
pdb|2DQD|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant (Hy50f)
Complexed With Hen Egg Lysozyme
pdb|2DQE|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant (Hy53a)
Complexed With Hen Egg Lysozyme
pdb|2DQF|A Chain A, Crystal Structure Of Hyhel-10 Fv Mutant (Y33ay53a)
Complexed With Hen Egg Lysozyme
pdb|2DQF|D Chain D, Crystal Structure Of Hyhel-10 Fv Mutant (Y33ay53a)
Complexed With Hen Egg Lysozyme
pdb|2DQG|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant (Hy53f)
Complexed With Hen Egg Lysozyme
pdb|2DQH|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant (Hy58a)
Complexed With Hen Egg Lysozyme
pdb|2DQJ|L Chain L, Crystal Structure Of Hyhel-10 Fv (Wild-Type) Complexed
With Hen Egg Lysozyme At 1.8a Resolution
Length = 107
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 15 GSRHTLMIRKVVASDFGNYSCEATN 39
G+ TL I V DFG Y C+ +N
Sbjct: 68 GTDFTLSINSVETEDFGMYFCQQSN 92
>pdb|1J1X|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant Ls93a Complexed
With Hen Egg White Lysozyme
Length = 107
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 15 GSRHTLMIRKVVASDFGNYSCEATN 39
G+ TL I V DFG Y C+ +N
Sbjct: 68 GTDFTLSINSVETEDFGMYFCQQSN 92
>pdb|2DQI|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant (Ly50a)
Complexed With Hen Egg Lysozyme
Length = 107
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 15 GSRHTLMIRKVVASDFGNYSCEATN 39
G+ TL I V DFG Y C+ +N
Sbjct: 68 GTDFTLSINSVETEDFGMYFCQQSN 92
>pdb|4DFI|A Chain A, Crystal Structure Of Cell Adhesion Molecule Nectin-2CD112
MUTANT FAMP
Length = 128
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 19 TLMIRKVVASDFGNYSCE-ATNPMGKHRAYLEL 50
TL + + D GNY+CE +T+P G R L
Sbjct: 94 TLALHGLTVEDEGNYTCEFSTSPKGSVRGMTWL 126
>pdb|2ZNX|A Chain A, 5-Fluorotryptophan Incorporated Scfv10 Complexed To Hen
Egg Lysozyme
pdb|2ZNX|B Chain B, 5-Fluorotryptophan Incorporated Scfv10 Complexed To Hen
Egg Lysozyme
Length = 242
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 15 GSRHTLMIRKVVASDFGNYSCEATN 39
G+ TL I V DFG Y C+ +N
Sbjct: 68 GTDFTLSINSVETEDFGMYFCQQSN 92
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 26.6 bits (57), Expect = 6.3, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 9 RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46
R+ + G+R TL + V +D +Y CE NP+ R+
Sbjct: 156 RLQLSNGNR-TLTLFNVTRNDTASYKCETQNPVSARRS 192
>pdb|1N26|A Chain A, Crystal Structure Of The Extra-Cellular Domains Of Human
Interleukin-6 Receptor Alpha Chain
Length = 325
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 20 LMIRKVVASDFGNYSC-EATNPMGKHRAYLEL-SGKPNPAIFRSHP 63
L++R V D GNYSC A P G +++ +P + FR P
Sbjct: 62 LLLRSVQLHDSGNYSCYRAGRPAGTVHLLVDVPPEEPQLSCFRKSP 107
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 20 LMIRKVVASDFGNYSCEATNPMG 42
L+ + ASD G YSCEA N G
Sbjct: 173 LVFDPLSASDTGEYSCEARNGYG 195
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHR--AYLELS 51
TL V+ SD G Y+C TN G AYL +S
Sbjct: 408 TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVS 442
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homolog 2
Length = 100
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 17 RHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELS 51
+ TL I+ + SD G Y+C AT+ G+ A L+++
Sbjct: 61 QGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
>pdb|1J1P|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant Ls91a Complexed
With Hen Egg White Lysozyme
Length = 107
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 15 GSRHTLMIRKVVASDFGNYSCEATN 39
G+ TL I V DFG Y C+ N
Sbjct: 68 GTDFTLSINSVETEDFGMYFCQQAN 92
>pdb|1IGI|L Chain L, 26-10 Fab:digoxin Complex-Affinity And Specificity Due To
Surface Complementarity
pdb|1IGJ|A Chain A, 26-10 Fab:digoxin Complex-Affinity And Specificity Due To
Surface Complementarity
pdb|1IGJ|C Chain C, 26-10 Fab:digoxin Complex-Affinity And Specificity Due To
Surface Complementarity
Length = 219
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 15 GSRHTLMIRKVVASDFGNYSCEATN---PMGKHRAYLEL---SGKPNPAIFRSHPQGRLP 68
G+ TL I +V A D G Y C T P LE+ P +IF +
Sbjct: 73 GTDFTLKISRVEAEDLGIYFCSQTTHVPPTFGGGTKLEIKRADAAPTVSIFPPSSEQLTS 132
Query: 69 NSYNITWMVSSYTPLEEFKIKYRKIPGNE 97
++ ++++ P ++ +K+ KI G+E
Sbjct: 133 GGASVVCFLNNFYP-KDINVKW-KIDGSE 159
>pdb|1HE7|A Chain A, Human Nerve Growth Factor Receptor Trka
Length = 126
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 31 GNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNS 70
GNY+ A NP G+ A + + NP F +P+ +P++
Sbjct: 76 GNYTLLAANPFGQASASIMAAFMDNP--FEFNPEDPIPDT 113
>pdb|1JNL|L Chain L, Crystal Structure Of Fab-Estradiol Complexes
pdb|1JNN|L Chain L, Crystal Structure Of Fab-Estradiol Complexes
Length = 211
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 15 GSRHTLMIRKVVASDFGNYSCE 36
G++++L I + DFGNY C
Sbjct: 68 GTQYSLKINSLQPEDFGNYYCH 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,696,264
Number of Sequences: 62578
Number of extensions: 200079
Number of successful extensions: 837
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 728
Number of HSP's gapped (non-prelim): 136
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)