Query psy15979
Match_columns 152
No_of_seqs 164 out of 1479
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 17:53:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15979.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15979hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 99.8 4.6E-18 1E-22 149.7 12.7 122 3-128 467-704 (1051)
2 cd05762 Ig8_MLCK Eighth immuno 99.4 2.1E-12 4.5E-17 86.5 7.1 56 2-57 40-97 (98)
3 cd05748 Ig_Titin_like Immunogl 99.2 4.9E-11 1.1E-15 75.3 7.3 50 2-51 24-73 (74)
4 cd05735 Ig8_DSCAM Eight immuno 99.2 1.4E-10 3E-15 76.1 7.3 51 7-57 32-88 (88)
5 cd05894 Ig_C5_MyBP-C C5 immuno 99.1 2.5E-10 5.4E-15 74.6 7.3 50 2-51 35-85 (86)
6 cd05852 Ig5_Contactin-1 Fifth 99.1 1.8E-10 3.8E-15 73.1 6.0 47 2-51 26-72 (73)
7 cd04971 Ig_TrKABC_d5 Fifth dom 99.1 2.1E-10 4.5E-15 74.3 6.3 36 16-51 44-79 (81)
8 cd05892 Ig_Myotilin_C C-termin 99.1 2.5E-10 5.5E-15 72.8 6.6 50 2-51 23-74 (75)
9 cd05747 Ig5_Titin_like M5, fif 99.1 4.1E-10 8.9E-15 74.1 7.0 50 2-51 43-92 (92)
10 cd05866 Ig1_NCAM-2 First immun 99.1 4.1E-10 8.8E-15 74.6 6.7 49 2-50 40-89 (92)
11 cd05855 Ig_TrkB_d5 Fifth domai 99.1 3.3E-10 7.2E-15 73.1 5.8 50 2-51 23-77 (79)
12 cd05737 Ig_Myomesin_like_C C-t 99.1 4.8E-10 1E-14 73.8 6.7 50 2-51 41-91 (92)
13 cd05746 Ig4_Peroxidasin Fourth 99.1 3.1E-10 6.7E-15 70.9 5.3 47 2-51 23-69 (69)
14 cd05853 Ig6_Contactin-4 Sixth 99.1 3.2E-10 6.9E-15 74.2 5.2 46 6-51 34-80 (85)
15 cd05723 Ig4_Neogenin Fourth im 99.0 9.7E-10 2.1E-14 69.0 6.5 47 2-51 24-70 (71)
16 cd05745 Ig3_Peroxidasin Third 99.0 7.3E-10 1.6E-14 70.0 5.6 46 3-51 28-73 (74)
17 cd05865 Ig1_NCAM-1 First immun 99.0 1.3E-09 2.8E-14 72.7 7.0 46 6-51 47-94 (96)
18 cd05870 Ig5_NCAM-2 Fifth immun 99.0 1.3E-09 2.8E-14 72.6 7.0 46 6-51 52-97 (98)
19 cd05893 Ig_Palladin_C C-termin 99.0 1.2E-09 2.7E-14 69.6 6.4 46 6-51 28-74 (75)
20 cd04969 Ig5_Contactin_like Fif 99.0 7.8E-10 1.7E-14 69.6 5.4 47 2-51 26-72 (73)
21 cd05744 Ig_Myotilin_C_like Imm 99.0 1.9E-09 4.1E-14 68.5 7.1 46 6-51 28-74 (75)
22 cd05743 Ig_Perlecan_D2_like Im 99.0 1.1E-09 2.4E-14 69.9 5.6 46 2-47 26-71 (78)
23 cd04975 Ig4_SCFR_like Fourth i 99.0 1.7E-09 3.7E-14 72.8 6.4 50 2-51 44-98 (101)
24 cd05732 Ig5_NCAM-1_like Fifth 99.0 2.2E-09 4.8E-14 70.7 6.8 46 6-51 50-95 (96)
25 KOG4221|consensus 99.0 9.3E-09 2E-13 92.2 12.3 115 18-133 483-609 (1381)
26 PF07679 I-set: Immunoglobulin 99.0 1.8E-09 4E-14 70.0 6.0 50 2-51 40-89 (90)
27 cd05854 Ig6_Contactin-2 Sixth 99.0 2.7E-09 5.8E-14 69.5 6.7 36 16-51 45-80 (85)
28 cd05895 Ig_Pro_neuregulin-1 Im 99.0 2.9E-09 6.3E-14 67.5 6.7 43 7-49 33-75 (76)
29 cd05869 Ig5_NCAM-1 Fifth immun 98.9 3.7E-09 7.9E-14 70.3 7.1 45 7-51 52-96 (97)
30 KOG3513|consensus 98.9 8.6E-09 1.9E-13 91.9 10.9 120 2-130 371-511 (1051)
31 cd05750 Ig_Pro_neuregulin Immu 98.9 4E-09 8.6E-14 66.3 6.1 39 11-49 36-74 (75)
32 cd05725 Ig3_Robo Third immunog 98.9 5.5E-09 1.2E-13 65.0 6.6 43 6-51 26-68 (69)
33 cd05763 Ig_1 Subgroup of the i 98.9 7.1E-09 1.5E-13 65.5 6.8 44 6-51 30-73 (75)
34 cd04976 Ig2_VEGFR Second immun 98.9 2.7E-09 5.8E-14 67.1 4.7 45 3-51 24-68 (71)
35 cd05736 Ig2_Follistatin_like S 98.9 4.7E-09 1E-13 66.4 5.7 44 8-53 31-74 (76)
36 cd05764 Ig_2 Subgroup of the i 98.9 6.8E-09 1.5E-13 65.3 6.1 44 5-51 30-73 (74)
37 cd05863 Ig2_VEGFR-3 Second imm 98.9 4.1E-09 8.8E-14 65.9 5.0 37 15-51 28-64 (67)
38 cd05876 Ig3_L1-CAM Third immun 98.9 6.7E-09 1.4E-13 65.1 5.8 36 16-51 34-69 (71)
39 cd05891 Ig_M-protein_C C-termi 98.9 9E-09 1.9E-13 67.9 6.3 49 3-51 42-91 (92)
40 cd04970 Ig6_Contactin_like Six 98.8 8.1E-09 1.8E-13 66.8 5.8 36 16-51 45-80 (85)
41 cd05859 Ig4_PDGFR-alpha Fourth 98.8 6.9E-09 1.5E-13 69.8 5.6 35 17-51 64-98 (101)
42 KOG4221|consensus 98.8 2.8E-08 6.1E-13 89.2 10.8 116 15-130 571-706 (1381)
43 cd05726 Ig4_Robo Fhird immunog 98.8 1E-08 2.2E-13 67.1 6.0 44 5-51 37-80 (90)
44 cd05851 Ig3_Contactin-1 Third 98.8 1E-08 2.2E-13 67.1 5.9 35 17-51 52-86 (88)
45 cd05730 Ig3_NCAM-1_like Third 98.8 1.2E-08 2.6E-13 67.3 6.0 43 7-51 49-91 (95)
46 cd05864 Ig2_VEGFR-2 Second imm 98.8 5.1E-09 1.1E-13 65.9 4.0 34 17-50 33-66 (70)
47 cd05857 Ig2_FGFR Second immuno 98.8 2E-08 4.3E-13 64.7 6.8 36 16-51 49-84 (85)
48 cd04973 Ig1_FGFR First immunog 98.8 1.2E-08 2.5E-13 65.4 5.6 46 2-51 33-78 (79)
49 cd04972 Ig_TrkABC_d4 Fourth do 98.8 3.6E-08 7.7E-13 64.5 7.4 44 8-51 46-89 (90)
50 cd05728 Ig4_Contactin-2-like F 98.8 1.6E-08 3.5E-13 65.6 5.4 46 2-51 39-84 (85)
51 cd05731 Ig3_L1-CAM_like Third 98.8 1.1E-08 2.4E-13 63.5 4.0 37 16-52 34-70 (71)
52 cd04974 Ig3_FGFR Third immunog 98.7 9.4E-09 2E-13 67.4 3.8 35 17-51 54-88 (90)
53 cd05773 Ig8_hNephrin_like Eigh 98.7 4.1E-08 8.9E-13 66.8 6.9 47 6-52 53-104 (109)
54 cd05765 Ig_3 Subgroup of the i 98.7 2.5E-08 5.5E-13 63.5 5.6 35 17-51 46-80 (81)
55 cd04978 Ig4_L1-NrCAM_like Four 98.7 2E-08 4.4E-13 63.2 5.0 36 16-51 39-74 (76)
56 cd04977 Ig1_NCAM-1_like First 98.7 4.9E-08 1.1E-12 64.3 6.7 47 5-51 43-91 (92)
57 cd05758 Ig5_KIRREL3-like Fifth 98.7 4.2E-08 9.1E-13 65.2 6.4 45 6-50 48-97 (98)
58 cd05898 Ig5_KIRREL3 Fifth immu 98.7 4.6E-08 1E-12 65.6 6.5 45 6-50 48-97 (98)
59 cd05858 Ig3_FGFR-2 Third immun 98.7 1.5E-08 3.2E-13 66.4 3.9 35 17-51 54-88 (90)
60 cd05734 Ig7_DSCAM Seventh immu 98.7 5.6E-08 1.2E-12 62.0 6.4 43 5-50 34-77 (79)
61 cd05856 Ig2_FGFRL1-like Second 98.7 6.1E-08 1.3E-12 61.6 6.3 36 16-51 46-81 (82)
62 cd05738 Ig2_RPTP_IIa_LAR_like 98.7 4.7E-08 1E-12 61.7 5.7 39 5-46 28-66 (74)
63 cd05867 Ig4_L1-CAM_like Fourth 98.7 3.7E-08 8E-13 62.4 4.6 35 17-51 40-74 (76)
64 PHA02785 IL-beta-binding prote 98.7 7.2E-07 1.6E-11 71.7 12.9 73 6-81 168-248 (326)
65 cd05739 Ig3_RPTP_IIa_LAR_like 98.6 6.8E-08 1.5E-12 60.4 5.3 33 17-51 37-69 (69)
66 cd05760 Ig2_PTK7 Second immuno 98.6 9.8E-08 2.1E-12 60.8 5.8 38 7-46 29-66 (77)
67 cd05742 Ig1_VEGFR_like First i 98.6 5.5E-08 1.2E-12 62.7 4.6 36 16-51 47-82 (84)
68 cd05740 Ig_CEACAM_D4 Fourth im 98.6 1.3E-07 2.8E-12 62.3 6.1 42 7-50 46-88 (91)
69 cd04968 Ig3_Contactin_like Thi 98.6 8.1E-08 1.8E-12 62.4 4.9 35 17-51 52-86 (88)
70 cd05868 Ig4_NrCAM Fourth immun 98.6 8.1E-08 1.8E-12 61.0 4.3 34 18-51 41-74 (76)
71 PHA02826 IL-1 receptor-like pr 98.6 6E-07 1.3E-11 68.8 9.8 58 17-78 97-154 (227)
72 cd05875 Ig6_hNeurofascin_like 98.6 3E-07 6.5E-12 58.6 6.6 42 4-47 27-72 (77)
73 cd05733 Ig6_L1-CAM_like Sixth 98.5 1.9E-07 4.2E-12 59.4 5.2 38 7-46 30-71 (77)
74 cd05757 Ig2_IL1R_like Second i 98.5 2.8E-07 6.1E-12 60.9 6.1 34 16-49 50-83 (92)
75 cd05724 Ig2_Robo Second immuno 98.5 1.9E-07 4.1E-12 60.0 5.0 38 6-46 42-79 (86)
76 cd05861 Ig1_PDGFR-alphabeta Fr 98.5 1.9E-07 4.1E-12 60.5 5.0 36 16-51 44-81 (84)
77 cd05771 IgC_Tapasin_R Tapasin- 98.5 8.5E-07 1.9E-11 62.5 8.4 65 19-83 2-68 (139)
78 PF00041 fn3: Fibronectin type 98.5 6.9E-07 1.5E-11 56.7 7.1 61 67-127 12-85 (85)
79 KOG4194|consensus 98.5 7.6E-07 1.6E-11 76.0 8.8 72 7-80 660-733 (873)
80 cd05756 Ig1_IL1R_like First im 98.5 2.6E-07 5.5E-12 61.3 4.7 35 17-51 59-93 (94)
81 cd07702 Ig2_VEGFR-1 Second imm 98.5 2.8E-07 6E-12 58.3 4.6 30 18-47 36-65 (72)
82 cd05874 Ig6_NrCAM Sixth immuno 98.4 5.9E-07 1.3E-11 57.3 5.8 43 6-50 29-76 (77)
83 cd05862 Ig1_VEGFR First immuno 98.4 3.8E-07 8.3E-12 59.4 4.1 35 16-50 48-82 (86)
84 KOG4222|consensus 98.4 1.3E-06 2.7E-11 78.5 7.7 112 17-128 473-614 (1281)
85 cd05848 Ig1_Contactin-5 First 98.3 1.3E-06 2.7E-11 57.8 5.3 29 18-46 58-87 (94)
86 cd05729 Ig2_FGFR_like Second i 98.3 3.7E-06 8E-11 53.5 7.3 37 15-51 48-84 (85)
87 cd05754 Ig3_Perlecan_like Thir 98.3 6.7E-07 1.5E-11 57.7 3.8 34 17-50 51-84 (85)
88 cd05849 Ig1_Contactin-1 First 98.3 3E-06 6.5E-11 56.0 6.7 41 6-50 49-91 (93)
89 cd05850 Ig1_Contactin-2 First 98.3 2.9E-06 6.3E-11 56.0 6.5 37 6-46 50-87 (94)
90 cd05882 Ig1_Necl-1 First (N-te 98.3 3.5E-06 7.6E-11 56.0 6.2 35 5-39 48-83 (95)
91 cd05727 Ig2_Contactin-2-like S 98.3 1.1E-06 2.3E-11 58.7 3.6 39 4-44 48-86 (96)
92 cd05713 Ig_MOG_like Immunoglob 98.2 3.5E-06 7.6E-11 55.9 5.9 45 7-51 51-98 (100)
93 cd04967 Ig1_Contactin First Ig 98.2 3.1E-06 6.8E-11 55.3 5.3 29 18-46 58-87 (91)
94 smart00409 IG Immunoglobulin. 98.2 1E-05 2.2E-10 50.3 7.4 47 5-51 38-84 (86)
95 smart00410 IG_like Immunoglobu 98.2 1E-05 2.2E-10 50.3 7.4 47 5-51 38-84 (86)
96 cd05717 Ig1_Necl-1-3_like Firs 98.2 6.1E-06 1.3E-10 54.3 6.0 37 6-42 49-86 (95)
97 cd05897 Ig2_IL1R2_like Second 98.2 4.3E-06 9.3E-11 55.7 5.1 30 17-46 54-83 (95)
98 cd07701 Ig1_Necl-3 First (N-te 98.2 1E-05 2.2E-10 53.7 6.7 38 5-42 48-86 (95)
99 KOG4222|consensus 98.1 1.1E-05 2.5E-10 72.6 8.7 45 7-54 179-226 (1281)
100 cd05722 Ig1_Neogenin First imm 98.1 1.3E-05 2.9E-10 52.6 6.5 40 8-50 47-93 (95)
101 cd05871 Ig_Semaphorin_classIII 98.1 8E-06 1.7E-10 53.8 5.3 42 6-51 45-87 (91)
102 cd05886 Ig1_Nectin-1_like Firs 98.1 1.1E-05 2.3E-10 54.1 6.0 45 7-51 51-97 (99)
103 cd07693 Ig1_Robo First immunog 98.1 1.4E-05 3E-10 52.2 6.4 26 25-50 71-97 (100)
104 PHA02785 IL-beta-binding prote 98.1 7.5E-05 1.6E-09 60.0 11.6 35 17-51 81-115 (326)
105 cd05877 Ig_LP_like Immunoglobu 98.1 1E-05 2.3E-10 54.2 5.4 45 7-51 56-101 (106)
106 cd07690 Ig1_CD4 First immunogl 98.0 5.6E-06 1.2E-10 55.0 3.6 32 14-45 61-92 (94)
107 cd05888 Ig1_Nectin-4_like Frst 98.0 2E-05 4.3E-10 52.7 6.2 45 7-51 51-98 (100)
108 cd05845 Ig2_L1-CAM_like Second 98.0 8.1E-06 1.8E-10 54.4 4.1 39 3-44 46-85 (95)
109 cd05873 Ig_Sema4D_like Immunog 98.0 5E-06 1.1E-10 54.5 3.0 36 2-41 35-71 (87)
110 smart00408 IGc2 Immunoglobulin 98.0 9.2E-06 2E-10 47.8 3.7 27 16-42 37-63 (63)
111 cd05718 Ig1_PVR_like First imm 98.0 2.9E-05 6.3E-10 51.0 6.4 45 7-51 50-96 (98)
112 cd05881 Ig1_Necl-2 First (N-te 97.9 2.7E-05 6E-10 51.8 5.5 35 5-39 48-83 (95)
113 cd05714 Ig_CSPGs_LP Immunoglob 97.9 2.4E-05 5.2E-10 52.4 5.2 38 14-51 64-101 (106)
114 cd05900 Ig_Aggrecan Immunoglob 97.9 2.9E-05 6.2E-10 53.2 5.5 45 7-51 60-107 (112)
115 cd05749 Ig2_Tyro3_like Second 97.9 2.4E-05 5.3E-10 50.4 4.7 29 16-46 47-75 (81)
116 cd05887 Ig1_Nectin-3_like Firs 97.9 5E-05 1.1E-09 50.6 5.9 45 7-51 48-94 (96)
117 cd05774 Ig_CEACAM_D1 First imm 97.8 6.4E-05 1.4E-09 50.9 6.1 42 6-50 61-103 (105)
118 cd05889 Ig1_DNAM-1_like First 97.8 7.2E-05 1.6E-09 49.9 6.3 45 7-51 48-94 (96)
119 KOG4194|consensus 97.8 0.00015 3.3E-09 62.3 9.1 106 16-127 572-698 (873)
120 cd05878 Ig_Aggrecan_like Immun 97.8 6.5E-05 1.4E-09 51.1 5.4 44 7-50 58-104 (110)
121 cd05753 Ig2_FcgammaR_like Seco 97.7 3.7E-05 8.1E-10 49.6 3.3 30 17-46 47-76 (83)
122 PF13927 Ig_3: Immunoglobulin 97.7 3.2E-05 7E-10 47.4 2.9 26 14-39 50-75 (75)
123 KOG0196|consensus 97.7 0.00068 1.5E-08 59.9 11.7 113 18-130 398-530 (996)
124 cd05741 Ig_CEACAM_D1_like Firs 97.7 0.00015 3.3E-09 46.9 6.0 36 7-45 49-84 (92)
125 cd04979 Ig_Semaphorin_C Immuno 97.7 5.7E-05 1.2E-09 49.0 3.9 33 19-51 52-85 (89)
126 PHA02826 IL-1 receptor-like pr 97.7 6.7E-05 1.4E-09 57.5 4.8 39 2-42 174-212 (227)
127 cd05775 Ig_SLAM-CD84_like_N N- 97.7 0.00012 2.5E-09 48.6 5.4 38 7-46 52-89 (97)
128 cd04983 IgV_TCR_alpha_like Imm 97.7 8.4E-05 1.8E-09 49.7 4.8 38 5-42 55-94 (109)
129 cd00099 IgV Immunoglobulin var 97.7 7.2E-05 1.6E-09 49.5 4.2 37 6-42 53-91 (105)
130 cd05860 Ig4_SCFR Fourth immuno 97.6 0.00012 2.7E-09 49.2 4.9 37 16-52 63-99 (101)
131 cd05752 Ig1_FcgammaR_like Frst 97.6 5.1E-05 1.1E-09 48.5 2.8 24 16-40 45-68 (78)
132 cd05896 Ig1_IL1RAPL-1_like Fir 97.6 0.00016 3.5E-09 48.8 5.2 35 17-51 69-103 (104)
133 PF00047 ig: Immunoglobulin do 97.5 0.00013 2.9E-09 43.9 3.7 18 20-37 47-64 (64)
134 cd05715 Ig_P0-like Immunoglobu 97.5 0.0004 8.7E-09 47.3 6.2 37 7-43 67-105 (116)
135 cd05879 Ig_P0 Immunoglobulin ( 97.5 0.00024 5.1E-09 49.0 4.9 36 7-42 67-104 (116)
136 cd04984 IgV_L_lambda Immunoglo 97.5 0.00024 5.1E-09 46.9 4.5 35 6-40 51-85 (98)
137 cd05901 Ig_Versican Immunoglob 97.4 0.00057 1.2E-08 47.2 6.4 45 7-51 65-112 (117)
138 cd05902 Ig_Neurocan Immunoglob 97.4 0.00036 7.8E-09 47.6 5.3 45 7-51 58-105 (110)
139 cd05872 Ig_Sema4B_like Immunog 97.4 0.00018 3.8E-09 46.9 3.4 40 2-46 35-74 (85)
140 cd05899 IgV_TCR_beta Immunoglo 97.4 0.00031 6.6E-09 47.4 4.2 37 6-42 59-96 (110)
141 cd04980 IgV_L_kappa Immunoglob 97.3 0.00027 5.7E-09 47.3 3.8 34 7-40 60-93 (106)
142 cd05846 Ig1_MRC-OX-2_like Firs 97.3 0.00041 8.9E-09 45.8 4.5 45 7-51 49-95 (97)
143 cd05880 Ig_EVA1 Immunoglobulin 97.3 0.00028 6.1E-09 48.3 3.8 29 15-43 76-104 (115)
144 PF07686 V-set: Immunoglobulin 97.3 0.00073 1.6E-08 44.7 5.4 35 6-40 65-101 (114)
145 smart00406 IGv Immunoglobulin 97.2 0.00043 9.4E-09 43.2 3.3 31 6-36 48-80 (81)
146 PHA02633 hypothetical protein; 97.2 0.00095 2.1E-08 40.7 4.5 38 16-53 16-53 (63)
147 cd04982 IgV_TCR_gamma Immunogl 97.2 0.00072 1.6E-08 45.8 4.5 34 6-39 63-98 (116)
148 cd05720 Ig_CD8_alpha Immunoglo 97.0 0.00087 1.9E-08 44.9 3.6 34 6-39 57-90 (104)
149 PF13895 Ig_2: Immunoglobulin 97.0 0.00076 1.6E-08 41.8 3.1 31 20-50 47-78 (80)
150 cd00063 FN3 Fibronectin type 3 96.9 0.0094 2E-07 36.8 7.7 61 68-128 14-87 (93)
151 cd05712 Ig_Siglec_N Immunoglob 96.9 0.0015 3.3E-08 44.8 4.1 34 7-40 67-102 (119)
152 cd05751 Ig1_LILRB1_like First 96.8 0.0011 2.5E-08 43.2 2.9 26 15-40 50-75 (91)
153 cd07706 IgV_TCR_delta Immunogl 96.8 0.0017 3.6E-08 44.1 3.7 34 6-39 58-93 (116)
154 cd07700 IgV_CD8_beta Immunoglo 96.8 0.0018 3.8E-08 43.5 3.7 33 7-39 59-93 (107)
155 cd05716 Ig_pIgR Immunoglobulin 96.6 0.0028 6.2E-08 41.6 3.7 36 6-41 50-87 (98)
156 cd05885 Ig2_Necl-4 Second immu 96.6 0.003 6.5E-08 40.7 3.4 28 17-44 42-69 (80)
157 PHA03376 BARF1; Provisional 96.4 0.0066 1.4E-07 45.4 4.6 35 6-40 75-109 (221)
158 cd00096 Ig Immunoglobulin doma 96.3 0.0089 1.9E-07 34.5 4.3 29 15-43 40-68 (74)
159 PHA02987 Ig domain OX-2-like p 96.1 0.0057 1.2E-07 45.4 3.0 41 7-47 73-116 (189)
160 cd05759 Ig2_KIRREL3-like Secon 96.0 0.012 2.6E-07 37.3 3.7 26 17-42 45-70 (82)
161 PF07354 Sp38: Zona-pellucida- 95.7 0.013 2.8E-07 45.7 3.7 37 2-41 24-60 (271)
162 cd04981 IgV_H Immunoglobulin ( 95.6 0.014 3.1E-07 39.9 3.3 33 7-39 63-97 (117)
163 smart00060 FN3 Fibronectin typ 95.4 0.071 1.5E-06 31.6 5.8 57 68-124 14-83 (83)
164 cd07694 Ig2_CD4 Second immunog 94.9 0.11 2.3E-06 34.1 5.6 25 15-39 48-72 (88)
165 KOG4367|consensus 94.5 0.036 7.9E-07 46.2 3.2 79 54-132 438-527 (699)
166 PHA02982 hypothetical protein; 94.4 0.069 1.5E-06 40.5 4.2 40 7-46 89-128 (251)
167 cd05898 Ig5_KIRREL3 Fifth immu 93.9 0.63 1.4E-05 30.9 7.6 16 108-125 77-92 (98)
168 cd05711 Ig_FcalphaRI Immunoglo 93.2 0.12 2.6E-06 33.8 3.4 22 17-38 54-75 (94)
169 cd00098 IgC Immunoglobulin Con 93.1 0.19 4.1E-06 32.2 4.2 26 18-43 62-87 (95)
170 cd05743 Ig_Perlecan_D2_like Im 92.6 0.89 1.9E-05 28.2 6.6 24 108-133 54-77 (78)
171 cd05749 Ig2_Tyro3_like Second 92.0 0.77 1.7E-05 29.2 5.8 19 106-126 57-75 (81)
172 PF11465 Receptor_2B4: Natural 91.4 0.49 1.1E-05 32.1 4.4 39 6-46 61-99 (108)
173 PF01108 Tissue_fac: Tissue fa 91.2 2.4 5.2E-05 28.2 7.8 51 69-119 35-100 (107)
174 cd05851 Ig3_Contactin-1 Third 89.7 2.3 5.1E-05 27.1 6.6 19 107-127 64-82 (88)
175 cd05761 Ig2_Necl-1-4_like Seco 89.5 1.2 2.7E-05 28.0 5.1 26 18-43 45-70 (82)
176 PF08204 V-set_CD47: CD47 immu 88.8 0.36 7.9E-06 33.9 2.3 34 18-52 86-119 (130)
177 cd05883 Ig2_Necl-2 Second immu 88.8 0.52 1.1E-05 30.4 2.9 25 17-41 43-67 (82)
178 KOG1480|consensus 88.2 0.18 4E-06 44.8 0.6 41 3-46 171-211 (909)
179 cd05751 Ig1_LILRB1_like First 88.0 5.1 0.00011 25.6 7.7 61 67-132 15-88 (91)
180 cd04975 Ig4_SCFR_like Fourth i 87.2 2.4 5.2E-05 28.1 5.5 19 106-126 75-93 (101)
181 cd05855 Ig_TrkB_d5 Fifth domai 87.2 2.7 5.8E-05 26.7 5.4 21 106-128 54-74 (79)
182 TIGR00864 PCC polycystin catio 87.0 12 0.00025 38.5 11.7 118 25-145 1664-1788(2740)
183 KOG4258|consensus 86.1 3.3 7.1E-05 37.7 7.0 68 67-134 841-922 (1025)
184 cd04971 Ig_TrKABC_d5 Fifth dom 85.7 2.6 5.5E-05 26.6 4.8 21 106-128 56-76 (81)
185 cd05724 Ig2_Robo Second immuno 85.6 3.3 7.2E-05 25.7 5.4 20 106-127 61-80 (86)
186 cd05850 Ig1_Contactin-2 First 85.6 3.6 7.8E-05 26.5 5.6 19 106-126 69-87 (94)
187 cd07693 Ig1_Robo First immunog 85.5 5.2 0.00011 25.2 6.4 23 106-130 74-96 (100)
188 KOG3515|consensus 85.4 2.3 4.9E-05 38.1 5.8 74 19-92 459-534 (741)
189 cd05735 Ig8_DSCAM Eight immuno 85.4 6.7 0.00014 24.9 6.8 21 105-127 56-76 (88)
190 cd04969 Ig5_Contactin_like Fif 85.4 2.3 5E-05 25.8 4.4 20 106-127 49-68 (73)
191 cd04974 Ig3_FGFR Third immunog 85.2 4.8 0.0001 25.6 6.0 21 105-127 64-84 (90)
192 cd05745 Ig3_Peroxidasin Third 85.1 5 0.00011 24.4 5.9 18 107-126 51-68 (74)
193 cd07691 Ig_CD3_gamma_delta Imm 84.3 1.3 2.8E-05 27.6 2.8 23 17-39 32-54 (69)
194 cd05755 Ig2_ICAM-1_like Second 83.9 1.6 3.5E-05 29.2 3.3 28 16-43 60-87 (100)
195 cd05740 Ig_CEACAM_D4 Fourth im 83.8 4.9 0.00011 25.8 5.6 17 107-125 66-82 (91)
196 cd05748 Ig_Titin_like Immunogl 83.0 8 0.00017 23.3 7.2 17 106-124 50-66 (74)
197 PF05790 C2-set: Immunoglobuli 82.6 8.9 0.00019 24.4 6.3 31 19-49 44-75 (80)
198 TIGR00864 PCC polycystin catio 82.6 25 0.00055 36.2 11.8 114 28-144 1481-1601(2740)
199 KOG4802|consensus 82.5 3.3 7.1E-05 34.7 5.2 25 104-128 215-242 (516)
200 cd05750 Ig_Pro_neuregulin Immu 82.3 4.6 0.0001 24.3 4.9 21 105-127 52-72 (75)
201 cd07692 Ig_CD3_epsilon Immunog 82.3 1.5 3.2E-05 27.1 2.5 23 17-40 34-56 (65)
202 cd07705 Ig2_Necl-1 Second immu 82.3 2.1 4.6E-05 27.1 3.4 25 18-42 46-70 (83)
203 KOG0196|consensus 82.2 8.4 0.00018 35.1 7.9 62 66-127 342-427 (996)
204 cd05867 Ig4_L1-CAM_like Fourth 82.2 3.2 7E-05 25.4 4.1 19 106-126 51-69 (76)
205 cd04968 Ig3_Contactin_like Thi 82.1 7.5 0.00016 24.4 6.0 20 105-126 62-81 (88)
206 cd05852 Ig5_Contactin-1 Fifth 82.0 4.4 9.5E-05 24.9 4.7 21 105-127 48-68 (73)
207 cd05762 Ig8_MLCK Eighth immuno 80.4 5.1 0.00011 26.1 4.8 26 105-132 65-90 (98)
208 cd05870 Ig5_NCAM-2 Fifth immun 80.0 9.9 0.00021 24.5 6.1 20 105-126 73-92 (98)
209 cd05884 Ig2_Necl-3 Second immu 80.0 4.6 0.0001 25.7 4.3 24 18-41 46-69 (83)
210 cd05848 Ig1_Contactin-5 First 79.2 11 0.00024 24.2 6.1 19 106-126 69-87 (94)
211 cd05754 Ig3_Perlecan_like Thir 77.6 14 0.00031 22.9 7.1 57 68-127 16-81 (85)
212 KOG4597|consensus 76.5 2.2 4.8E-05 36.2 2.5 35 17-51 256-290 (560)
213 cd05854 Ig6_Contactin-2 Sixth 76.1 8.4 0.00018 24.3 4.8 24 104-129 55-78 (85)
214 KOG3515|consensus 75.2 4 8.7E-05 36.6 3.9 72 17-88 162-241 (741)
215 cd00146 PKD polycystic kidney 75.0 17 0.00036 22.4 6.9 57 69-125 15-73 (81)
216 KOG4228|consensus 74.7 6.6 0.00014 36.6 5.1 104 32-145 1-115 (1087)
217 PF07495 Y_Y_Y: Y_Y_Y domain; 74.6 8.7 0.00019 22.7 4.3 20 108-127 38-57 (66)
218 cd05721 IgV_CTLA-4 Immunoglobu 74.6 5.3 0.00012 27.4 3.6 32 7-38 61-94 (115)
219 smart00407 IGc1 Immunoglobulin 74.2 10 0.00023 23.2 4.7 23 18-40 48-70 (75)
220 PF00801 PKD: PKD domain; Int 74.1 11 0.00024 22.7 4.7 23 101-123 44-66 (69)
221 PHA03042 CD47-like protein; Pr 73.7 11 0.00023 29.9 5.5 35 16-51 69-103 (286)
222 smart00089 PKD Repeats in poly 73.6 18 0.00039 22.1 7.3 22 101-122 47-68 (79)
223 PHA03282 envelope glycoprotein 72.0 10 0.00022 32.3 5.3 29 5-37 115-143 (540)
224 cd05711 Ig_FcalphaRI Immunoglo 71.4 24 0.00053 22.7 7.5 63 67-132 14-92 (94)
225 cd07703 Ig2_Nectin-2_like Seco 70.3 11 0.00024 24.7 4.3 26 18-43 59-84 (95)
226 PHA03283 envelope glycoprotein 67.9 21 0.00045 30.8 6.3 38 14-51 130-167 (542)
227 cd05719 Ig2_PVR_like Second im 67.9 16 0.00036 23.8 4.8 27 17-43 58-84 (95)
228 cd07698 IgC_MHC_I_alpha3 Class 63.6 18 0.00039 23.1 4.3 19 22-40 64-82 (93)
229 cd05860 Ig4_SCFR Fourth immuno 62.8 39 0.00086 22.6 5.8 16 108-125 77-92 (101)
230 PF11344 DUF3146: Protein of u 62.6 6.5 0.00014 25.0 1.9 18 101-118 63-80 (80)
231 cd05771 IgC_Tapasin_R Tapasin- 59.8 14 0.0003 25.4 3.5 23 18-40 108-130 (139)
232 PHA02914 Immunoglobulin-like d 59.3 6.2 0.00013 33.0 1.7 25 16-40 344-368 (500)
233 PHA03271 envelope glycoprotein 53.7 1.4E+02 0.003 25.4 9.7 41 4-44 191-233 (490)
234 cd05847 IgC_CH2_IgE CH2 domain 49.1 41 0.0009 21.8 4.2 25 18-42 63-87 (94)
235 COG4733 Phage-related protein, 48.4 1.2E+02 0.0027 28.0 8.0 101 19-127 661-786 (952)
236 PHA03189 UL14 tegument protein 47.0 35 0.00076 27.6 4.1 36 7-42 121-157 (348)
237 PHA03286 envelope glycoprotein 47.0 57 0.0012 27.8 5.5 34 14-47 123-156 (492)
238 PF08205 C2-set_2: CD80-like C 46.9 42 0.00091 20.8 3.9 26 18-43 61-86 (89)
239 PHA02914 Immunoglobulin-like d 46.4 45 0.00097 28.1 4.7 39 17-55 80-119 (500)
240 PHA03282 envelope glycoprotein 44.8 21 0.00046 30.5 2.7 30 16-46 331-360 (540)
241 PF02480 Herpes_gE: Alphaherpe 43.6 7.8 0.00017 32.7 0.0 31 16-46 87-117 (439)
242 PHA03286 envelope glycoprotein 42.6 21 0.00046 30.3 2.4 27 19-46 308-334 (492)
243 PF07654 C1-set: Immunoglobuli 42.4 69 0.0015 19.7 4.4 20 19-41 58-77 (83)
244 cd05770 IgC_beta2m Class I maj 42.2 71 0.0015 20.7 4.5 13 26-38 68-80 (93)
245 PHA03283 envelope glycoprotein 42.2 30 0.00065 29.9 3.2 36 10-46 307-342 (542)
246 PF08329 ChitinaseA_N: Chitina 42.0 70 0.0015 22.5 4.6 60 68-127 37-101 (133)
247 PHA03269 envelope glycoprotein 41.5 1.8E+02 0.0039 25.2 7.6 33 7-39 276-310 (566)
248 KOG4152|consensus 41.0 22 0.00047 31.0 2.2 24 104-127 653-676 (830)
249 cd07699 IgC_L Immunoglobulin C 40.9 48 0.001 21.6 3.5 21 19-39 67-87 (100)
250 PHA03240 envelope glycoprotein 39.1 15 0.00033 28.1 1.0 36 7-44 96-131 (258)
251 cd05767 IgC_MHC_II_alpha Class 38.9 78 0.0017 20.5 4.3 12 27-38 70-81 (94)
252 COG3422 Uncharacterized conser 38.1 25 0.00054 21.1 1.6 15 106-120 10-24 (59)
253 PF09067 EpoR_lig-bind: Erythr 35.8 1.3E+02 0.0029 20.0 6.7 56 68-123 21-95 (104)
254 PF02480 Herpes_gE: Alphaherpe 34.1 29 0.00064 29.3 2.0 31 15-46 266-296 (439)
255 cd07697 IgC_TCR_gamma T cell r 32.1 1E+02 0.0022 20.1 4.0 8 32-39 76-83 (96)
256 PF05083 LST1: LST-1 protein; 28.4 37 0.00079 21.2 1.2 17 24-40 56-72 (74)
257 COG4729 Uncharacterized conser 28.3 1.6E+02 0.0035 21.3 4.6 33 102-135 61-93 (156)
258 cd05768 IgC_CH4 CH4 domain (fo 28.3 77 0.0017 20.8 2.9 10 29-38 79-88 (102)
259 PF05345 He_PIG: Putative Ig d 27.5 75 0.0016 18.0 2.4 14 109-122 36-49 (49)
260 PHA03273 envelope glycoprotein 26.9 4.1E+02 0.009 22.9 7.6 27 18-44 198-224 (486)
261 cd02848 Chitinase_N_term Chiti 26.8 2.1E+02 0.0045 19.4 7.9 58 69-126 34-97 (106)
262 PF01688 Herpes_gI: Alphaherpe 26.4 81 0.0018 23.0 2.9 23 16-38 122-144 (161)
263 PF13754 Big_3_4: Bacterial Ig 26.3 1E+02 0.0022 17.7 2.9 28 107-134 22-49 (54)
264 COG5475 Uncharacterized small 25.8 1.6E+02 0.0034 17.6 3.7 37 6-46 8-44 (60)
265 KOG0200|consensus 25.0 63 0.0014 28.3 2.6 24 16-39 11-34 (609)
266 cd04985 IgC_CH1 CH1 domain (fi 24.4 1.2E+02 0.0025 19.6 3.2 21 19-39 65-85 (95)
267 PHA03281 envelope glycoprotein 23.9 75 0.0016 27.8 2.7 31 15-46 472-502 (642)
268 cd05766 IgC_MHC_II_beta Class 23.3 1.7E+02 0.0037 18.7 3.9 14 26-39 68-81 (94)
269 PF09294 Interfer-bind: Interf 23.3 2.1E+02 0.0045 18.2 6.9 34 84-117 44-86 (106)
270 cd07689 Ig2_VCAM-1 Second immu 22.7 2.4E+02 0.0053 18.7 7.8 24 66-89 13-36 (99)
271 cd07696 IgC_CH3 CH3 domain (th 22.4 1.4E+02 0.0031 19.2 3.4 9 31-39 76-84 (96)
272 COG3291 FOG: PKD repeat [Gener 21.4 4E+02 0.0087 20.8 8.4 64 70-133 95-160 (297)
273 COG5140 UFD1 Ubiquitin fusion- 21.1 2.5E+02 0.0053 22.2 4.8 39 3-41 154-192 (331)
274 KOG0238|consensus 20.8 1.2E+02 0.0025 26.7 3.2 28 108-135 328-355 (670)
275 KOG0859|consensus 20.1 1.9E+02 0.0042 22.0 3.9 36 6-46 41-76 (217)
No 1
>KOG3513|consensus
Probab=99.77 E-value=4.6e-18 Score=149.73 Aligned_cols=122 Identities=24% Similarity=0.362 Sum_probs=93.7
Q ss_pred ccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEE-----------------------------------
Q psy15979 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY----------------------------------- 47 (152)
Q Consensus 3 l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~----------------------------------- 47 (152)
+.+++||.+..+| +|.|.|++++|+|.|+|+|+|.+|+++++
T Consensus 467 ~~~~~r~~i~edG---tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD 543 (1051)
T KOG3513|consen 467 LLQSGRIRILEDG---TLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDVKVGESVTLTCEASHD 543 (1051)
T ss_pred cccCceEEECCCC---cEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhhccCceEEEEeecccC
Confidence 4567899997554 89999999999999999999999999885
Q ss_pred -----------------------------------------------------------------EEEecCCCCceeecC
Q psy15979 48 -----------------------------------------------------------------LELSGKPNPAIFRSH 62 (152)
Q Consensus 48 -----------------------------------------------------------------~~v~~~P~p~~~~~~ 62 (152)
+.|.++|.||.....
T Consensus 544 ~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~~v~~ 623 (1051)
T KOG3513|consen 544 PSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPGPPPDVHV 623 (1051)
T ss_pred CCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEecCCCCCCceeE
Confidence 333466665542110
Q ss_pred CCCCCCCeEEEEEEec--CCCCcceEEEEEEECCCCCC-------C-------cceEEecCCCeEEEEEEEEcCCCCCCC
Q psy15979 63 PQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEP-------S-------PMSNQLTGTNQYQNRRLVRKRFDRGNS 126 (152)
Q Consensus 63 ~~~~~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~~~-------~-------~~~~~L~~~~~Y~~rV~A~N~~G~g~~ 126 (152)
.....+++.|+|... +++||..|.+++|......| . .....|.++..|+|||.|.|.+|.|+|
T Consensus 624 -~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~~~~W~~v~~vp~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG~geP 702 (1051)
T KOG3513|consen 624 -DDISDTTARLSWSPGSDNNSPIEKYTIQFRTPFPGKWKAVTTVPGNITGDESATVVNLSPWVEYEFRVVAVNSIGIGEP 702 (1051)
T ss_pred -eeeccceEEEEeecCCCCCCCceEEeEEecCCCCCcceEeeECCCcccCccceeEEccCCCcceEEEEEEEcccccCCC
Confidence 123468999999974 45899999999987643321 1 124578999999999999999999999
Q ss_pred CC
Q psy15979 127 TN 128 (152)
Q Consensus 127 s~ 128 (152)
|.
T Consensus 703 S~ 704 (1051)
T KOG3513|consen 703 SP 704 (1051)
T ss_pred CC
Confidence 96
No 2
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.37 E-value=2.1e-12 Score=86.49 Aligned_cols=56 Identities=25% Similarity=0.422 Sum_probs=48.7
Q ss_pred cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEE--ecCCCCc
Q psy15979 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL--SGKPNPA 57 (152)
Q Consensus 2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v--~~~P~p~ 57 (152)
+|..++|+.+......+.|+|.++..+|+|.|+|.|+|.+|.+++++.| .++|.||
T Consensus 40 ~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P~pP 97 (98)
T cd05762 40 QIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKPDPP 97 (98)
T ss_pred EecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCCCCC
Confidence 5677888999887788999999999999999999999999999986554 5788776
No 3
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.23 E-value=4.9e-11 Score=75.30 Aligned_cols=50 Identities=30% Similarity=0.470 Sum_probs=44.2
Q ss_pred cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
+|..++|+.+...+..+.|.|.+++.+|+|.|+|.|+|.+|.++.++.|.
T Consensus 24 ~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05748 24 PLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVK 73 (74)
T ss_pred EcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEE
Confidence 45567888888777789999999999999999999999999999988774
No 4
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.17 E-value=1.4e-10 Score=76.06 Aligned_cols=51 Identities=33% Similarity=0.554 Sum_probs=39.8
Q ss_pred CcEEEEE----cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe--cCCCCc
Q psy15979 7 ERRIMET----RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNPA 57 (152)
Q Consensus 7 ~r~~i~~----~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~--~~P~p~ 57 (152)
.||.+.. ....+.|.|.++..+|+|.|+|+|.|.+|.+++.+.|. .+|.||
T Consensus 32 ~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~~P~~P 88 (88)
T cd05735 32 SRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPP 88 (88)
T ss_pred CcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEeCCCCCC
Confidence 4776653 12337899999999999999999999999999876655 566654
No 5
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.13 E-value=2.5e-10 Score=74.58 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=43.1
Q ss_pred cccC-CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 2 RLET-TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 2 ~l~~-~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
+|.. ++|+.+...+..+.|.|.++.++|+|.|+|.|+|.+|.+.+++.|.
T Consensus 35 ~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~ 85 (86)
T cd05894 35 AFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVK 85 (86)
T ss_pred ECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEE
Confidence 3433 4688888777788999999999999999999999999999988775
No 6
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.12 E-value=1.8e-10 Score=73.08 Aligned_cols=47 Identities=30% Similarity=0.299 Sum_probs=40.0
Q ss_pred cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
+|..+.|+.+..+ ++|.|.+++.+|+|.|+|.|+|.+|.+.++..|+
T Consensus 26 ~l~~~~r~~~~~~---g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 72 (73)
T cd05852 26 LLVNNSRISIWDD---GSLEILNITKLDEGSYTCFAENNRGKANSTGVLS 72 (73)
T ss_pred ecccCCCEEEcCC---CEEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence 3556778888643 4799999999999999999999999999987764
No 7
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.12 E-value=2.1e-10 Score=74.25 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=33.0
Q ss_pred CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
..+.|.|.+++++|+|.|+|+|+|.+|.+++++.|.
T Consensus 44 ~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 44 YHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred cEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 466899999999999999999999999999988774
No 8
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.12 E-value=2.5e-10 Score=72.81 Aligned_cols=50 Identities=28% Similarity=0.367 Sum_probs=40.3
Q ss_pred ccc-CCCcEEEEEcC-CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 2 RLE-TTERRIMETRG-SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 2 ~l~-~~~r~~i~~~~-~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
+|. +++|+++..++ ...+|.|.+++.+|+|.|+|.|.|.+|.+.++..|.
T Consensus 23 ~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05892 23 MVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLD 74 (75)
T ss_pred ECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEe
Confidence 344 34788886543 345899999999999999999999999999887764
No 9
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.09 E-value=4.1e-10 Score=74.10 Aligned_cols=50 Identities=30% Similarity=0.423 Sum_probs=43.8
Q ss_pred cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
+|..++|+.+...+..+.|.|.+++.+|+|.|+|.|+|.+|.++.++.|+
T Consensus 43 ~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 92 (92)
T cd05747 43 IIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTLT 92 (92)
T ss_pred ECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEeC
Confidence 35567789888777788999999999999999999999999999987763
No 10
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.08 E-value=4.1e-10 Score=74.64 Aligned_cols=49 Identities=29% Similarity=0.533 Sum_probs=41.2
Q ss_pred cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceE-EEEEE
Q psy15979 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR-AYLEL 50 (152)
Q Consensus 2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~-~~~~v 50 (152)
+|.+++|+.+..++..+.|.|.++..+|+|.|+|.|.|..|... .++.|
T Consensus 40 ~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l 89 (92)
T cd05866 40 KIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVL 89 (92)
T ss_pred EecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEE
Confidence 35567889888777788999999999999999999999999874 35554
No 11
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.07 E-value=3.3e-10 Score=73.09 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=38.9
Q ss_pred cccCCCcEEE--E---EcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 2 RLETTERRIM--E---TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 2 ~l~~~~r~~i--~---~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
+|++++++.. . .....+.|.|.++..+|+|.|+|+|+|.+|+++.++.+.
T Consensus 23 ~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 23 ILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred ECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 4666665432 1 223467899999999999999999999999999987763
No 12
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.07 E-value=4.8e-10 Score=73.82 Aligned_cols=50 Identities=22% Similarity=0.336 Sum_probs=41.9
Q ss_pred cccCCCcEEEEEc-CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 2 RLETTERRIMETR-GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 2 ~l~~~~r~~i~~~-~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
+|..++++.+... +....|.|.+++.+|+|.|+|.|+|.+|.+...+.|.
T Consensus 41 ~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 91 (92)
T cd05737 41 ALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVS 91 (92)
T ss_pred ECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEe
Confidence 4566778877644 4467899999999999999999999999999988775
No 13
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.07 E-value=3.1e-10 Score=70.86 Aligned_cols=47 Identities=28% Similarity=0.418 Sum_probs=39.0
Q ss_pred cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
+|..+.|+.+.. .+.|.|.+++.+|+|.|+|.|.|.+|.++.++.|+
T Consensus 23 ~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~Lt 69 (69)
T cd05746 23 QVTESGKFHISP---EGYLAIRDVGVADQGRYECVARNTIGYASVSMVLS 69 (69)
T ss_pred ECCCCCCEEECC---CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEeC
Confidence 355567777743 35899999999999999999999999999887763
No 14
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.06 E-value=3.2e-10 Score=74.16 Aligned_cols=46 Identities=24% Similarity=0.277 Sum_probs=36.2
Q ss_pred CCcEEEEEc-CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 6 TERRIMETR-GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 6 ~~r~~i~~~-~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
+.||.+... ...+.|+|.|++.+|+|+|+|+|+|.+++..++..|.
T Consensus 34 ~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 34 GDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 346665421 2356899999999999999999999999998865554
No 15
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.03 E-value=9.7e-10 Score=69.00 Aligned_cols=47 Identities=26% Similarity=0.305 Sum_probs=38.9
Q ss_pred cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
+|.+++++.+..++ .|.|.+++.+|+|.|+|+|+|.+|+++++++|.
T Consensus 24 ~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 70 (71)
T cd05723 24 MVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLI 70 (71)
T ss_pred ECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEE
Confidence 35556777776443 588999999999999999999999999988774
No 16
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.02 E-value=7.3e-10 Score=70.03 Aligned_cols=46 Identities=33% Similarity=0.571 Sum_probs=38.2
Q ss_pred ccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 3 l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
|..+.++.+.. .+.|.|.+++.+|+|.|+|.|.|.+|.++.++.|.
T Consensus 28 ~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 73 (74)
T cd05745 28 LSVDRRHLVLS---SGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLT 73 (74)
T ss_pred CCCCCCeEEcc---CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEe
Confidence 45566666643 34899999999999999999999999999987764
No 17
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.02 E-value=1.3e-09 Score=72.72 Aligned_cols=46 Identities=24% Similarity=0.323 Sum_probs=37.7
Q ss_pred CCcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEcCC-CceEEEEEEe
Q psy15979 6 TERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPM-GKHRAYLELS 51 (152)
Q Consensus 6 ~~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~-G~~~~~~~v~ 51 (152)
+.|+.+.. .+..++|.|.+++.+|+|.|+|+|+|.+ |.+++++.|.
T Consensus 47 ~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~ 94 (96)
T cd05865 47 QQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVK 94 (96)
T ss_pred CCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEE
Confidence 45666643 3446889999999999999999999997 9999887764
No 18
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.02 E-value=1.3e-09 Score=72.60 Aligned_cols=46 Identities=30% Similarity=0.496 Sum_probs=39.6
Q ss_pred CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
++|+.+......+.|.|.+++.+|+|.|+|.|.|.+|.+..++.|.
T Consensus 52 ~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 97 (98)
T cd05870 52 DGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD 97 (98)
T ss_pred CceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEe
Confidence 4678886655667899999999999999999999999999887764
No 19
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.01 E-value=1.2e-09 Score=69.57 Aligned_cols=46 Identities=26% Similarity=0.310 Sum_probs=38.1
Q ss_pred CCcEEEEEcC-CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 6 TERRIMETRG-SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 6 ~~r~~i~~~~-~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
.+|+.+...+ ....|.|.+++.+|+|.|+|.|.|.+|+++++..|.
T Consensus 28 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05893 28 TDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLD 74 (75)
T ss_pred CCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEe
Confidence 4678876543 334799999999999999999999999999887664
No 20
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.01 E-value=7.8e-10 Score=69.65 Aligned_cols=47 Identities=34% Similarity=0.374 Sum_probs=39.2
Q ss_pred cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
+|..++|+.+..+ +.|.|.+++.+|+|.|+|+|.|.+|.+++++.|.
T Consensus 26 ~~~~~~~~~~~~~---~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 72 (73)
T cd04969 26 LLTNSSRICIWPD---GSLEILNVTKSDEGKYTCFAENFFGKANSTGSLS 72 (73)
T ss_pred EcccCCCEEECCC---CeEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence 3456678877533 4799999999999999999999999999987764
No 21
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.00 E-value=1.9e-09 Score=68.53 Aligned_cols=46 Identities=26% Similarity=0.307 Sum_probs=38.1
Q ss_pred CCcEEEEEc-CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 6 TERRIMETR-GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 6 ~~r~~i~~~-~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
.+|+.+... .....|.|.+++.+|+|.|+|.|.|.+|.+.+...|.
T Consensus 28 ~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 74 (75)
T cd05744 28 TDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLD 74 (75)
T ss_pred CCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEe
Confidence 467777544 3455799999999999999999999999999887764
No 22
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=98.99 E-value=1.1e-09 Score=69.92 Aligned_cols=46 Identities=35% Similarity=0.494 Sum_probs=39.8
Q ss_pred cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEE
Q psy15979 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY 47 (152)
Q Consensus 2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~ 47 (152)
+|..+.|+++...+..+.|.|.+++.+|+|.|+|.|.|.+|...+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 71 (78)
T cd05743 26 HVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGI 71 (78)
T ss_pred ECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEec
Confidence 3556678888777777899999999999999999999999988764
No 23
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=98.98 E-value=1.7e-09 Score=72.84 Aligned_cols=50 Identities=20% Similarity=0.243 Sum_probs=39.1
Q ss_pred cccCCCcEEEEEc-----CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 2 RLETTERRIMETR-----GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 2 ~l~~~~r~~i~~~-----~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
+|..+.++.+... ...+.|.|..+.++|+|.|+|+|+|.+|.++.++.|.
T Consensus 44 ~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~ 98 (101)
T cd04975 44 TLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLTFELY 98 (101)
T ss_pred eCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEEEEEEE
Confidence 4555555544332 1357899999999999999999999999999887765
No 24
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.97 E-value=2.2e-09 Score=70.75 Aligned_cols=46 Identities=26% Similarity=0.500 Sum_probs=39.1
Q ss_pred CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
+.|+.+......+.|.|.+++.+|+|.|+|.|+|.+|.++.++.|.
T Consensus 50 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~ 95 (96)
T cd05732 50 DGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLE 95 (96)
T ss_pred cceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEe
Confidence 3466666556678999999999999999999999999999887764
No 25
>KOG4221|consensus
Probab=98.96 E-value=9.3e-09 Score=92.22 Aligned_cols=115 Identities=13% Similarity=0.227 Sum_probs=82.7
Q ss_pred eEEEEceeCCCCCEEEEEEEEcCCCceEEE--EEEecCCCCceeecCCCCCCCCeEEEEEEecC--CCCcceEEEEEEEC
Q psy15979 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAY--LELSGKPNPAIFRSHPQGRLPNSYNITWMVSS--YTPLEEFKIKYRKI 93 (152)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~--~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~--~~pi~~y~~~~r~~ 93 (152)
..++|.|+++.-.-...|.|.|..|+..++ +.|+-.|.++.. .........++.+.|..+. +.||+.|++.|...
T Consensus 483 ~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEgp~~-~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~ 561 (1381)
T KOG4221|consen 483 IQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPEGPVQ-LQAYATSPTTILVTWEPPPFGNGPITGYKLFYSED 561 (1381)
T ss_pred eEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCCCCcc-ccccccCcceEEEEecCCCCCCCCceEEEEEEEcC
Confidence 556666666544444456889999988774 677666654444 3334556789999999864 57999999999887
Q ss_pred CCCC-----CCcceEEe---cCCCeEEEEEEEEcCCCCCCCCCCcccc
Q psy15979 94 PGNE-----PSPMSNQL---TGTNQYQNRRLVRKRFDRGNSTNGGLIV 133 (152)
Q Consensus 94 ~~~~-----~~~~~~~L---~~~~~Y~~rV~A~N~~G~g~~s~~~~~~ 133 (152)
+... ....+++| .+.++|.|||.|.|++|.|..|+...|.
T Consensus 562 ~~~~~~~~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~ 609 (1381)
T KOG4221|consen 562 DTGKELRVENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVR 609 (1381)
T ss_pred CCCceEEEecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEE
Confidence 3322 22345554 4499999999999999999999887663
No 26
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.96 E-value=1.8e-09 Score=70.02 Aligned_cols=50 Identities=32% Similarity=0.591 Sum_probs=45.3
Q ss_pred cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
+|..+.++.+...+..+.|.|.+++.+|+|.|+|.|+|..|.+++.+.|.
T Consensus 40 ~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~ 89 (90)
T PF07679_consen 40 PLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLT 89 (90)
T ss_dssp EEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEE
T ss_pred ceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEE
Confidence 45668899998888999999999999999999999999999999987774
No 27
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.96 E-value=2.7e-09 Score=69.51 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=32.3
Q ss_pred CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
..+.|+|.+++.+|+|.|+|+|.|.+|.++++..|.
T Consensus 45 ~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 45 TIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred eEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 457899999999999999999999999999976654
No 28
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.96 E-value=2.9e-09 Score=67.46 Aligned_cols=43 Identities=19% Similarity=0.381 Sum_probs=36.4
Q ss_pred CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEE
Q psy15979 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLE 49 (152)
Q Consensus 7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~ 49 (152)
.|+.+......+.|.|.+++.+|+|.|+|+|.|.+|.++.++.
T Consensus 33 ~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 33 NKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred ceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 3455555566789999999999999999999999999988765
No 29
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.95 E-value=3.7e-09 Score=70.25 Aligned_cols=45 Identities=20% Similarity=0.443 Sum_probs=38.1
Q ss_pred CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
.|+.+......+.|.|.+++.+|+|.|+|.|.|.+|.++.++.|.
T Consensus 52 ~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 96 (97)
T cd05869 52 GHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLE 96 (97)
T ss_pred ccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEEE
Confidence 456665555567899999999999999999999999999987764
No 30
>KOG3513|consensus
Probab=98.93 E-value=8.6e-09 Score=91.93 Aligned_cols=120 Identities=23% Similarity=0.267 Sum_probs=78.0
Q ss_pred cccCCCc---EEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCCC-----CCCCCeEEE
Q psy15979 2 RLETTER---RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ-----GRLPNSYNI 73 (152)
Q Consensus 2 ~l~~~~r---~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~~-----~~~~~~~~L 73 (152)
||...+| ++|. .+.|.|.+|+.+|+|.|.|.|+|.+|..-+...|.+...+|.+...++ ......+.|
T Consensus 371 pl~~~~r~~~~~i~----~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i 446 (1051)
T KOG3513|consen 371 PLEPAERDPRYKID----DGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTI 446 (1051)
T ss_pred ecCccCCCcceEEe----CCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEE
Confidence 5555555 8885 458999999999999999999999999998777765443333322221 223567788
Q ss_pred EEEecCCCCcceEEEEEEECCCCC--------CCcceEEecC-----CCeEEEEEEEEcCCCCCCCCCCc
Q psy15979 74 TWMVSSYTPLEEFKIKYRKIPGNE--------PSPMSNQLTG-----TNQYQNRRLVRKRFDRGNSTNGG 130 (152)
Q Consensus 74 ~W~~~~~~pi~~y~~~~r~~~~~~--------~~~~~~~L~~-----~~~Y~~rV~A~N~~G~g~~s~~~ 130 (152)
.|.+.+- |-..|.|. +.+... ..+.++.|.+ ++.|.| .|+|++|.-+.+...
T Consensus 447 ~C~~~as-P~p~~~W~--k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC--~A~N~~G~a~~~~~L 511 (1051)
T KOG3513|consen 447 DCKPFAS-PKPKVSWL--KGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTC--VAENKLGKAESTGNL 511 (1051)
T ss_pred eeccCCC-CcceEEEE--cCCcccccCceEEECCCCcEEecccCcccCcEEEE--EEEcccCccceEEEE
Confidence 8887653 33334443 221100 1112333333 899999 889999998776544
No 31
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.91 E-value=4e-09 Score=66.28 Aligned_cols=39 Identities=23% Similarity=0.443 Sum_probs=33.5
Q ss_pred EEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEE
Q psy15979 11 METRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLE 49 (152)
Q Consensus 11 i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~ 49 (152)
+......+.|.|.+++.+|+|.|+|+|.|.+|.+..++.
T Consensus 36 ~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 36 IRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred EEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 444456788999999999999999999999999887654
No 32
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.91 E-value=5.5e-09 Score=64.96 Aligned_cols=43 Identities=40% Similarity=0.555 Sum_probs=35.9
Q ss_pred CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
..|+.+.. .+.|.|.+++.+|+|.|+|.|.|.+|.+.+.+.|.
T Consensus 26 ~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 68 (69)
T cd05725 26 KGRAEILD---DKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLT 68 (69)
T ss_pred CCcEEEee---CCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEE
Confidence 35666653 34799999999999999999999999999887764
No 33
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.90 E-value=7.1e-09 Score=65.49 Aligned_cols=44 Identities=30% Similarity=0.394 Sum_probs=35.8
Q ss_pred CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
+.|+.+... .+.|.|.+++.+|+|.|+|.|.|.+|...+.+.|.
T Consensus 30 ~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~ 73 (75)
T cd05763 30 ERRMHVMPE--DDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLT 73 (75)
T ss_pred ccceEEecC--CCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEE
Confidence 456665433 35899999999999999999999999988876664
No 34
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.89 E-value=2.7e-09 Score=67.12 Aligned_cols=45 Identities=31% Similarity=0.437 Sum_probs=34.9
Q ss_pred ccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 3 l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
|..+.++.+ ..+.|.|.+++.+|+|.|+|.|.|.+|..+..+.+.
T Consensus 24 l~~~~~~~~----~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~ 68 (71)
T cd04976 24 ISEKNRTKK----SGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFT 68 (71)
T ss_pred CCCCCEEEc----CCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEE
Confidence 444444433 246899999999999999999999999887765543
No 35
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.89 E-value=4.7e-09 Score=66.45 Aligned_cols=44 Identities=25% Similarity=0.301 Sum_probs=36.2
Q ss_pred cEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecC
Q psy15979 8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK 53 (152)
Q Consensus 8 r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~ 53 (152)
++.+. +....|.|.+++.+|+|.|+|.|.|.+|.++.++.|.+.
T Consensus 31 ~~~~~--~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 31 QLTLI--ANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred cEEEe--CCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 44443 345689999999999999999999999999998877653
No 36
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.87 E-value=6.8e-09 Score=65.30 Aligned_cols=44 Identities=30% Similarity=0.455 Sum_probs=35.4
Q ss_pred CCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 5 ~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
.+.++.+.. .+.|.|.++..+|+|.|+|+|+|.+|.+++.+.|.
T Consensus 30 ~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05764 30 NSSRTLVYD---NGTLDILITTVKDTGSFTCIASNAAGEATATVELH 73 (74)
T ss_pred CCCeEEEec---CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEE
Confidence 344554433 34799999999999999999999999998887764
No 37
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.87 E-value=4.1e-09 Score=65.86 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=31.9
Q ss_pred CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
...+.|.|.++..+|+|.|+|+|+|.+|..+.++.+.
T Consensus 28 ~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~ 64 (67)
T cd05863 28 HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLE 64 (67)
T ss_pred CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEE
Confidence 3567899999999999999999999999887765543
No 38
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.87 E-value=6.7e-09 Score=65.15 Aligned_cols=36 Identities=33% Similarity=0.549 Sum_probs=32.6
Q ss_pred CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
..+.|.|.+++.+|+|.|+|.|+|.+|.++.++.|.
T Consensus 34 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 69 (71)
T cd05876 34 NNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVT 69 (71)
T ss_pred CCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEE
Confidence 456899999999999999999999999999887765
No 39
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.85 E-value=9e-09 Score=67.89 Aligned_cols=49 Identities=27% Similarity=0.413 Sum_probs=39.8
Q ss_pred ccCCCcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 3 LETTERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 3 l~~~~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
+..++++.+.. .+..++|.|.+++.+|+|.|+|.|+|.+|.+++.+.|.
T Consensus 42 ~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~ 91 (92)
T cd05891 42 IELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVS 91 (92)
T ss_pred CCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEE
Confidence 45566776643 33346899999999999999999999999999988875
No 40
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.84 E-value=8.1e-09 Score=66.84 Aligned_cols=36 Identities=31% Similarity=0.442 Sum_probs=31.7
Q ss_pred CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
..+.|.|.+++.+|+|+|+|+|.|.+|.++++..|.
T Consensus 45 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 45 SNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred ccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 457899999999999999999999999988865554
No 41
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=98.84 E-value=6.9e-09 Score=69.84 Aligned_cols=35 Identities=20% Similarity=0.180 Sum_probs=31.8
Q ss_pred EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
.++|.|.+++.+|+|.|+|+|+|..|.++.++.|.
T Consensus 64 ~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~ 98 (101)
T cd05859 64 VSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQ 98 (101)
T ss_pred ccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEE
Confidence 47899999999999999999999999998876664
No 42
>KOG4221|consensus
Probab=98.84 E-value=2.8e-08 Score=89.24 Aligned_cols=116 Identities=17% Similarity=0.179 Sum_probs=85.9
Q ss_pred CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEE-----EEEecCCCCceeecCCCCCCCCeEEEEEEecC----CCCcce
Q psy15979 15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY-----LELSGKPNPAIFRSHPQGRLPNSYNITWMVSS----YTPLEE 85 (152)
Q Consensus 15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~-----~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~----~~pi~~ 85 (152)
.+...++|.++.+.+.-.|.|+|.|.+|...++ +.+.+.|.+|..........++++.+.|..+. ...++.
T Consensus 571 ~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itg 650 (1381)
T KOG4221|consen 571 NNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITG 650 (1381)
T ss_pred cCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEEEccCCCcccccceEEE
Confidence 356789999999999999999999999987774 34457786543322222456899999999753 246788
Q ss_pred EEEEEEECCCCC------CC--c---ceEEecCCCeEEEEEEEEcCCCCCCCCCCc
Q psy15979 86 FKIKYRKIPGNE------PS--P---MSNQLTGTNQYQNRRLVRKRFDRGNSTNGG 130 (152)
Q Consensus 86 y~~~~r~~~~~~------~~--~---~~~~L~~~~~Y~~rV~A~N~~G~g~~s~~~ 130 (152)
|.+.|+...... .. . ....|++++.|.||+.|.|..|.|.+|+-.
T Consensus 651 YkIRy~~~~~~~~~~~t~v~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~ 706 (1381)
T KOG4221|consen 651 YKIRYRKLSREDEVNETVVKGNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWV 706 (1381)
T ss_pred EEEEecccCcccccceeecccchhhhHhhcCCCCceEEEEEEEeccCCCCCcccce
Confidence 999998664332 11 1 112488899999999999999999988644
No 43
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.83 E-value=1e-08 Score=67.09 Aligned_cols=44 Identities=27% Similarity=0.346 Sum_probs=36.0
Q ss_pred CCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 5 ~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
...|+.+.. .+.|.|.+++.+|+|.|+|.|.|.+|...+.+.|.
T Consensus 37 ~~~r~~v~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (90)
T cd05726 37 SSSRFSVSQ---TGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE 80 (90)
T ss_pred CCCeEEECC---CCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence 456777743 34799999999999999999999999988865554
No 44
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.83 E-value=1e-08 Score=67.08 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=31.6
Q ss_pred EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
++.|.|.+++.+|+|.|+|+|.|.+|.++....|.
T Consensus 52 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 86 (88)
T cd05851 52 GAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVY 86 (88)
T ss_pred CCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence 35899999999999999999999999999877664
No 45
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.82 E-value=1.2e-08 Score=67.27 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=35.8
Q ss_pred CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
.++.+. ...+.|.|.+++.+|+|.|+|.|+|.+|.++..+.|.
T Consensus 49 ~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~ 91 (95)
T cd05730 49 EKYSFN--EDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLK 91 (95)
T ss_pred CEEEEe--CCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEE
Confidence 455553 3346799999999999999999999999999887765
No 46
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.81 E-value=5.1e-09 Score=65.89 Aligned_cols=34 Identities=32% Similarity=0.426 Sum_probs=29.5
Q ss_pred EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEE
Q psy15979 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50 (152)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v 50 (152)
.+.|.|.++.++|+|.|+|+|.|.+|.++....+
T Consensus 33 ~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~ 66 (70)
T cd05864 33 GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTF 66 (70)
T ss_pred CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEE
Confidence 3579999999999999999999999988775443
No 47
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.81 E-value=2e-08 Score=64.68 Aligned_cols=36 Identities=33% Similarity=0.566 Sum_probs=32.6
Q ss_pred CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
....|.|.++..+|+|.|+|+|.|.+|+++.++.|.
T Consensus 49 ~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 84 (85)
T cd05857 49 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 84 (85)
T ss_pred CceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEE
Confidence 456799999999999999999999999999987774
No 48
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.81 E-value=1.2e-08 Score=65.38 Aligned_cols=46 Identities=24% Similarity=0.543 Sum_probs=38.8
Q ss_pred cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
+|..+.|+.+. ...|.|.+++.+|+|.|+|.|.|..|.+...+.|.
T Consensus 33 ~l~~~~~~~~~----~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~ 78 (79)
T cd04973 33 QLGENNRTRIT----GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVN 78 (79)
T ss_pred CCCCCceEEEe----CCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEe
Confidence 56677788774 24799999999999999999999999988877664
No 49
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.78 E-value=3.6e-08 Score=64.51 Aligned_cols=44 Identities=18% Similarity=0.365 Sum_probs=36.0
Q ss_pred cEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 8 r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
+.........+.|.|.+++.+|.|.|+|.|+|.+|.+.+.+.|.
T Consensus 46 ~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~ 89 (90)
T cd04972 46 TDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVT 89 (90)
T ss_pred cEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEe
Confidence 33333344567899999999999999999999999999987764
No 50
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.77 E-value=1.6e-08 Score=65.57 Aligned_cols=46 Identities=37% Similarity=0.422 Sum_probs=38.1
Q ss_pred cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
+|..+.++.+. ++.|.|.+++.+|+|.|+|.|.|.+|...+++.|.
T Consensus 39 ~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 84 (85)
T cd05728 39 PLASENRIEVE----AGDLRITKLSLSDSGMYQCVAENKHGTIYASAELA 84 (85)
T ss_pred ECCCCCeEEEe----CCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEE
Confidence 35556676653 34799999999999999999999999999987775
No 51
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.75 E-value=1.1e-08 Score=63.54 Aligned_cols=37 Identities=32% Similarity=0.530 Sum_probs=32.7
Q ss_pred CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG 52 (152)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~ 52 (152)
..+.|.|.+++.+|+|.|+|+|.|.+|..+.++.|..
T Consensus 34 ~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 34 FNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 3468999999999999999999999999998877653
No 52
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.75 E-value=9.4e-09 Score=67.43 Aligned_cols=35 Identities=31% Similarity=0.501 Sum_probs=31.3
Q ss_pred EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
...|.|.+|+.+|+|.|+|+|.|.+|.+.++..|.
T Consensus 54 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~ 88 (90)
T cd04974 54 SEVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLT 88 (90)
T ss_pred cceEEEeccccccCcEEEEEeecccCcccCCEEEE
Confidence 45899999999999999999999999998876664
No 53
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.74 E-value=4.1e-08 Score=66.81 Aligned_cols=47 Identities=26% Similarity=0.361 Sum_probs=36.7
Q ss_pred CCcEEEEE--c--CCEeEEEEceeC-CCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979 6 TERRIMET--R--GSRHTLMIRKVV-ASDFGNYSCEATNPMGKHRAYLELSG 52 (152)
Q Consensus 6 ~~r~~i~~--~--~~~~~L~I~~v~-~~D~G~YtC~A~N~~G~~~~~~~v~~ 52 (152)
+.||.+.. . ...+.|.|.++. .+|+|.|+|.|.|.+|.+...+.|..
T Consensus 53 ~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~ 104 (109)
T cd05773 53 NPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVS 104 (109)
T ss_pred CCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEe
Confidence 45776542 1 125789999997 69999999999999999998877753
No 54
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.74 E-value=2.5e-08 Score=63.46 Aligned_cols=35 Identities=37% Similarity=0.472 Sum_probs=32.2
Q ss_pred EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
.+.|.|.+++.+|+|.|+|.|.|.+|.+.+.+.|+
T Consensus 46 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 46 IGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred ccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 46899999999999999999999999999988775
No 55
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.74 E-value=2e-08 Score=63.22 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=32.4
Q ss_pred CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
..+.|.|.+++.+|+|.|+|.|.|..|.+.+.+.|.
T Consensus 39 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 74 (76)
T cd04978 39 DGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVH 74 (76)
T ss_pred cCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEE
Confidence 356899999999999999999999999999877664
No 56
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.73 E-value=4.9e-08 Score=64.35 Aligned_cols=47 Identities=30% Similarity=0.392 Sum_probs=35.1
Q ss_pred CCCcEEEE-EcCCEeEEEEceeCCCCCEEEEEEEEcCCCc-eEEEEEEe
Q psy15979 5 TTERRIME-TRGSRHTLMIRKVVASDFGNYSCEATNPMGK-HRAYLELS 51 (152)
Q Consensus 5 ~~~r~~i~-~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~-~~~~~~v~ 51 (152)
+.+++.+. +....++|+|.+++.+|+|.|+|.|.|.+|. .+.++.|.
T Consensus 43 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~ 91 (92)
T cd04977 43 TQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLK 91 (92)
T ss_pred cCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEE
Confidence 33455444 3445679999999999999999999999764 55566553
No 57
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.72 E-value=4.2e-08 Score=65.22 Aligned_cols=45 Identities=36% Similarity=0.485 Sum_probs=36.7
Q ss_pred CCcEEEEEc----CCEeEEEEceeCCCC-CEEEEEEEEcCCCceEEEEEE
Q psy15979 6 TERRIMETR----GSRHTLMIRKVVASD-FGNYSCEATNPMGKHRAYLEL 50 (152)
Q Consensus 6 ~~r~~i~~~----~~~~~L~I~~v~~~D-~G~YtC~A~N~~G~~~~~~~v 50 (152)
+.||.+... +..++|.|.+++.+| .|.|+|+|.|.+|.+++.+.|
T Consensus 48 ~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 48 SGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAIISL 97 (98)
T ss_pred CCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcccEEEEe
Confidence 368877643 344689999999945 899999999999999988776
No 58
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.72 E-value=4.6e-08 Score=65.56 Aligned_cols=45 Identities=33% Similarity=0.553 Sum_probs=39.3
Q ss_pred CCcEEEEEc----CCEeEEEEceeCCCC-CEEEEEEEEcCCCceEEEEEE
Q psy15979 6 TERRIMETR----GSRHTLMIRKVVASD-FGNYSCEATNPMGKHRAYLEL 50 (152)
Q Consensus 6 ~~r~~i~~~----~~~~~L~I~~v~~~D-~G~YtC~A~N~~G~~~~~~~v 50 (152)
+.||.|... +..+.|.|.++..+| .|.|.|.|.|.+|.++..+.|
T Consensus 48 ~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 48 SERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceEEEEe
Confidence 478988653 589999999998877 689999999999999998876
No 59
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.72 E-value=1.5e-08 Score=66.37 Aligned_cols=35 Identities=31% Similarity=0.479 Sum_probs=31.1
Q ss_pred EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
.+.|.|.+++.+|+|.|+|+|.|.+|.+..+..|.
T Consensus 54 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~ 88 (90)
T cd05858 54 MEVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLT 88 (90)
T ss_pred eeEEEEccCCHHHCEEEEEEEEeCCCcccceEEEE
Confidence 36899999999999999999999999988876554
No 60
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.71 E-value=5.6e-08 Score=61.99 Aligned_cols=43 Identities=26% Similarity=0.483 Sum_probs=33.7
Q ss_pred CCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE-EEEE
Q psy15979 5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLEL 50 (152)
Q Consensus 5 ~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~~~v 50 (152)
.++|+.+.. .++|.|.+++.+|+|.|+|+|.|.+|.+.+ .+.|
T Consensus 34 ~~~r~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l 77 (79)
T cd05734 34 LAGRIQLLS---NGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL 77 (79)
T ss_pred cCCCEEEec---CCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence 346666643 358999999999999999999999998754 3433
No 61
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.70 E-value=6.1e-08 Score=61.60 Aligned_cols=36 Identities=25% Similarity=0.540 Sum_probs=32.6
Q ss_pred CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
....|.|.+++.+|+|.|+|.|.|..|.+++++.|.
T Consensus 46 ~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 46 KKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred ceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 457899999999999999999999999999887764
No 62
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.69 E-value=4.7e-08 Score=61.74 Aligned_cols=39 Identities=31% Similarity=0.394 Sum_probs=31.8
Q ss_pred CCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979 5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46 (152)
Q Consensus 5 ~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~ 46 (152)
.+.|+.+.. .+.|.|.+++.+|+|.|+|.|.|.+|...+
T Consensus 28 ~~~~~~~~~---~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s 66 (74)
T cd05738 28 SNGRIKQLR---SGALQIENSEESDQGKYECVATNSAGTRYS 66 (74)
T ss_pred CCCCEEEcC---CcEEEECCCChhhCEEEEEEEECCCCceEc
Confidence 456776642 347999999999999999999999998643
No 63
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.67 E-value=3.7e-08 Score=62.42 Aligned_cols=35 Identities=31% Similarity=0.437 Sum_probs=31.5
Q ss_pred EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
.+.|.|.+++.+|+|.|+|.|.|.+|...+...|.
T Consensus 40 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 74 (76)
T cd05867 40 SGALILTDVQPSDTAVYQCEARNRHGNLLANAHVH 74 (76)
T ss_pred CCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEE
Confidence 35799999999999999999999999998876664
No 64
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.66 E-value=7.2e-07 Score=71.65 Aligned_cols=73 Identities=18% Similarity=0.230 Sum_probs=47.5
Q ss_pred CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEE----EEE--ecCCCCceeecCCC--CCCCCeEEEEEEe
Q psy15979 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY----LEL--SGKPNPAIFRSHPQ--GRLPNSYNITWMV 77 (152)
Q Consensus 6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~----~~v--~~~P~p~~~~~~~~--~~~~~~~~L~W~~ 77 (152)
+.|+... ..+.|.|.+|+.+|+|.|+|.|.|.+|..... +.| ..+..||.+..+.. ...+..+.|.|.+
T Consensus 168 ~~r~~~~---~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a 244 (326)
T PHA02785 168 NKRLKQR---TPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRV 244 (326)
T ss_pred CcceEec---CCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEE
Confidence 3455443 23589999999999999999999999976532 233 33334444332211 1225779999998
Q ss_pred cCCC
Q psy15979 78 SSYT 81 (152)
Q Consensus 78 ~~~~ 81 (152)
.+++
T Consensus 245 ~g~P 248 (326)
T PHA02785 245 SLRP 248 (326)
T ss_pred ECCC
Confidence 7654
No 65
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.65 E-value=6.8e-08 Score=60.41 Aligned_cols=33 Identities=24% Similarity=0.506 Sum_probs=28.4
Q ss_pred EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
...|.|.+++ |+|+|+|+|.|.+|..+++..|+
T Consensus 37 ~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l~ 69 (69)
T cd05739 37 RNVLELTNIY--ESANYTCVAISSLGMIEATAQVT 69 (69)
T ss_pred ccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEEC
Confidence 3479999984 89999999999999999887763
No 66
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.63 E-value=9.8e-08 Score=60.75 Aligned_cols=38 Identities=26% Similarity=0.376 Sum_probs=30.8
Q ss_pred CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46 (152)
Q Consensus 7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~ 46 (152)
.++.+.. ..+.|.|.+++++|+|.|+|.|.|.+|...+
T Consensus 29 ~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s 66 (77)
T cd05760 29 GNYSVSS--KERTLTLRSAGPDDSGLYYCCAHNAFGSVCS 66 (77)
T ss_pred ccEEEeC--CCCEEEEeeCCcccCEEEEEEEEeCCCeEee
Confidence 3455542 3458999999999999999999999998754
No 67
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.63 E-value=5.5e-08 Score=62.74 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=32.1
Q ss_pred CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
..+.|.|.+++.+|+|.|+|.|.|.+|..+.+..|.
T Consensus 47 ~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~ 82 (84)
T cd05742 47 LSSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVN 82 (84)
T ss_pred EEEEEEECCCChhhCEEEEEEEccCCCceEEEEEEE
Confidence 467899999999999999999999999988876653
No 68
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.61 E-value=1.3e-07 Score=62.31 Aligned_cols=42 Identities=31% Similarity=0.470 Sum_probs=33.2
Q ss_pred CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE-EEEE
Q psy15979 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLEL 50 (152)
Q Consensus 7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~~~v 50 (152)
+|+.+. ...+.|.|.+++++|+|.|.|.|.|.+|...+ .+.|
T Consensus 46 ~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L 88 (91)
T cd05740 46 PRLQLS--NDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYIL 88 (91)
T ss_pred CCEEEe--CCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEE
Confidence 455554 23458999999999999999999999998766 4444
No 69
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.60 E-value=8.1e-08 Score=62.43 Aligned_cols=35 Identities=31% Similarity=0.398 Sum_probs=31.5
Q ss_pred EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
.+.|.|.+++.+|+|.|+|.|.|.+|.+.+...|.
T Consensus 52 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 86 (88)
T cd04968 52 GAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIY 86 (88)
T ss_pred CCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEE
Confidence 46899999999999999999999999998876654
No 70
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.58 E-value=8.1e-08 Score=61.02 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=30.9
Q ss_pred eEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
+.|.|.+++.+|+|.|+|+|+|.+|.+.++..|.
T Consensus 41 ~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 74 (76)
T cd05868 41 DTIIFSKVQERSSAVYQCNASNEYGYLLANAFVN 74 (76)
T ss_pred CEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEE
Confidence 4799999999999999999999999999976664
No 71
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.58 E-value=6e-07 Score=68.80 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=44.4
Q ss_pred EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCCCCCCCCeEEEEEEec
Q psy15979 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVS 78 (152)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~ 78 (152)
...|.|.+++.+|+|.|+|+|.|..|..+..+.|...+.+.... ...+..+.|.|...
T Consensus 97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~~~~~----~~~G~~v~L~C~~~ 154 (227)
T PHA02826 97 SENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSGTINYQ----FNSGKDSKLHCYGT 154 (227)
T ss_pred CCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecCCccce----EecCCCEEEEeeCC
Confidence 45899999999999999999999999988888776644332111 12357888999864
No 72
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.56 E-value=3e-07 Score=58.63 Aligned_cols=42 Identities=26% Similarity=0.278 Sum_probs=32.0
Q ss_pred cCCCcEEEEEcCCEeEEEEceeC----CCCCEEEEEEEEcCCCceEEE
Q psy15979 4 ETTERRIMETRGSRHTLMIRKVV----ASDFGNYSCEATNPMGKHRAY 47 (152)
Q Consensus 4 ~~~~r~~i~~~~~~~~L~I~~v~----~~D~G~YtC~A~N~~G~~~~~ 47 (152)
..+.++.+. ...+.|.|.++. .+|+|.|+|.|+|.+|.+.+.
T Consensus 27 ~~~~~~~~~--~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 27 AKDPRVSMR--RRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred cCCCcEEEe--CCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 456777764 234689998874 247999999999999988773
No 73
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.54 E-value=1.9e-07 Score=59.36 Aligned_cols=38 Identities=29% Similarity=0.436 Sum_probs=29.5
Q ss_pred CcEEEEEcCCEeEEEEceeCC----CCCEEEEEEEEcCCCceEE
Q psy15979 7 ERRIMETRGSRHTLMIRKVVA----SDFGNYSCEATNPMGKHRA 46 (152)
Q Consensus 7 ~r~~i~~~~~~~~L~I~~v~~----~D~G~YtC~A~N~~G~~~~ 46 (152)
.++.+. ...+.|.|.++.. +|+|.|+|+|+|.+|.+.+
T Consensus 30 ~~~~~~--~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 30 PRVTMK--PDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CCEEEe--CCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 445443 3456899998854 7999999999999998776
No 74
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.53 E-value=2.8e-07 Score=60.95 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=29.5
Q ss_pred CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEE
Q psy15979 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLE 49 (152)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~ 49 (152)
.++.|.|.++..+|+|.|+|+|.|..|.....+.
T Consensus 50 ~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t 83 (92)
T cd05757 50 KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVT 83 (92)
T ss_pred cCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEE
Confidence 3568999999999999999999999998776544
No 75
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.52 E-value=1.9e-07 Score=60.02 Aligned_cols=38 Identities=34% Similarity=0.512 Sum_probs=31.7
Q ss_pred CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46 (152)
Q Consensus 6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~ 46 (152)
+.++.+.. .+.|.|.+++.+|+|.|+|.|.|.+|...+
T Consensus 42 ~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s 79 (86)
T cd05724 42 NERVRIVD---DGNLLIAEARKSDEGTYKCVATNMVGERES 79 (86)
T ss_pred CCCEEEcc---CCEEEEeECCcccCEEEEEEEEeccCceee
Confidence 45666643 358999999999999999999999998765
No 76
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.52 E-value=1.9e-07 Score=60.51 Aligned_cols=36 Identities=25% Similarity=0.403 Sum_probs=30.0
Q ss_pred CEeEEEEceeCCCCCEEEEEEEEcCCC--ceEEEEEEe
Q psy15979 16 SRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELS 51 (152)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G--~~~~~~~v~ 51 (152)
..++|.|.+++.+|+|.|+|.|+|..+ ....++.|+
T Consensus 44 ~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~ 81 (84)
T cd05861 44 LRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNIT 81 (84)
T ss_pred EEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEE
Confidence 367899999999999999999999887 555565554
No 77
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.51 E-value=8.5e-07 Score=62.52 Aligned_cols=65 Identities=18% Similarity=0.362 Sum_probs=44.9
Q ss_pred EEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec--CCCCceeecCCCCCCCCeEEEEEEecCCCCc
Q psy15979 19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG--KPNPAIFRSHPQGRLPNSYNITWMVSSYTPL 83 (152)
Q Consensus 19 ~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~--~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi 83 (152)
+|+|.+++.+|+|.|+|.+.|..|..+..++|.. +|................+.|.|.+.+..|.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~ 68 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPL 68 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCC
Confidence 6999999999999999999999898888666653 3332211111111134668899999875553
No 78
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=98.50 E-value=6.9e-07 Score=56.73 Aligned_cols=61 Identities=20% Similarity=0.383 Sum_probs=48.1
Q ss_pred CCCeEEEEEEecC--CCCcceEEEEEEECCCCC--------CCcceE---EecCCCeEEEEEEEEcCCCCCCCC
Q psy15979 67 LPNSYNITWMVSS--YTPLEEFKIKYRKIPGNE--------PSPMSN---QLTGTNQYQNRRLVRKRFDRGNST 127 (152)
Q Consensus 67 ~~~~~~L~W~~~~--~~pi~~y~~~~r~~~~~~--------~~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s 127 (152)
..+++.|.|..+. ..++..|.|+|+...... .....+ .|.+++.|+|+|.|.|..|.|++|
T Consensus 12 ~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~g~g~~S 85 (85)
T PF00041_consen 12 SPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSDGEGPPS 85 (85)
T ss_dssp CSSEEEEEEEESSSTSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETTEEEEEE
T ss_pred CCCEEEEEEECCCCCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCCcCcCCC
Confidence 5789999999874 578999999999876553 111233 466699999999999999999764
No 79
>KOG4194|consensus
Probab=98.48 E-value=7.6e-07 Score=75.96 Aligned_cols=72 Identities=19% Similarity=0.237 Sum_probs=52.0
Q ss_pred CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE--EEEEecCCCCceeecCCCCCCCCeEEEEEEecCC
Q psy15979 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA--YLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSY 80 (152)
Q Consensus 7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~--~~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~ 80 (152)
+|..++.++ ..+.|.||+.+|.|.|+|.|.|.+|...+ ++.|...|.+.....+.....++.+.|+|..++.
T Consensus 660 RRl~Vmped--d~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~ 733 (873)
T KOG4194|consen 660 RRLHVMPED--DVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGA 733 (873)
T ss_pred heeeecCCC--CEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCC
Confidence 566666543 47899999999999999999999998877 4555567765443332222246788899988654
No 80
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.48 E-value=2.6e-07 Score=61.33 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=32.0
Q ss_pred EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
++.|.|.++..+|+|.|+|++.|..|.++..+.|+
T Consensus 59 ~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L~ 93 (94)
T cd05756 59 KDLLWFLPAALEDSGLYTCVVRNSTYCMKVSISLT 93 (94)
T ss_pred CCeEEEccCCcccCeEEEEEEcCCCccEEEEEEEE
Confidence 35899999999999999999999999999988765
No 81
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.47 E-value=2.8e-07 Score=58.33 Aligned_cols=30 Identities=20% Similarity=0.119 Sum_probs=25.8
Q ss_pred eEEEEceeCCCCCEEEEEEEEcCCCceEEE
Q psy15979 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAY 47 (152)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~ 47 (152)
.+|.|.+++.+|+|.|+|+|+|........
T Consensus 36 ~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~ 65 (72)
T cd07702 36 YSLVIKDVTEEDAGIYTILLGIKQYNLFKN 65 (72)
T ss_pred CEEEECcCCHHHCEEEEEEEEccccceEee
Confidence 479999999999999999999986655544
No 82
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.45 E-value=5.9e-07 Score=57.26 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=30.9
Q ss_pred CCcEEEEEcCCEeEEEEceeCC----CCCEEEEEEEEcCCCceEE-EEEE
Q psy15979 6 TERRIMETRGSRHTLMIRKVVA----SDFGNYSCEATNPMGKHRA-YLEL 50 (152)
Q Consensus 6 ~~r~~i~~~~~~~~L~I~~v~~----~D~G~YtC~A~N~~G~~~~-~~~v 50 (152)
+.++.+. ...++|.|..+.. .|+|.|+|+|+|.+|.+.+ .++|
T Consensus 29 ~~~~~~~--~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 29 DPKVTMK--PNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred CCCEEEe--CCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 3445543 3346788888764 3889999999999999877 3443
No 83
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.40 E-value=3.8e-07 Score=59.40 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=30.6
Q ss_pred CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEE
Q psy15979 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50 (152)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v 50 (152)
..+.|.|.+++.+|+|.|+|.|+|..|...+...|
T Consensus 48 ~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~ 82 (86)
T cd05862 48 LSSTLTIENVTLSDLGRYTCTASSGQMIAKNSTIV 82 (86)
T ss_pred eeeEEEEecCCcccCEEEEEEEeecceEecccEEE
Confidence 46789999999999999999999999987776554
No 84
>KOG4222|consensus
Probab=98.36 E-value=1.3e-06 Score=78.53 Aligned_cols=112 Identities=20% Similarity=0.266 Sum_probs=77.4
Q ss_pred EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe----cCC-------CCceeecCC-----CCCCCCeEEEEEEecC-
Q psy15979 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS----GKP-------NPAIFRSHP-----QGRLPNSYNITWMVSS- 79 (152)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~----~~P-------~p~~~~~~~-----~~~~~~~~~L~W~~~~- 79 (152)
.+.|+|.++...|.|.|||.|.+..|...-...|. +.. .|..+...+ .....++++|+|....
T Consensus 473 ~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~ 552 (1281)
T KOG4222|consen 473 IGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSP 552 (1281)
T ss_pred eceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCC
Confidence 45899999999999999999999999876643332 111 111111111 1234689999998742
Q ss_pred --CCCcceEEEEEEECCCCC--------CCcceE---EecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979 80 --YTPLEEFKIKYRKIPGNE--------PSPMSN---QLTGTNQYQNRRLVRKRFDRGNSTN 128 (152)
Q Consensus 80 --~~pi~~y~~~~r~~~~~~--------~~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~ 128 (152)
..|+..|+++|-.-...+ +.+..+ .|++...|.|.|+|.|..|.+.|+-
T Consensus 553 sg~vP~s~yiieafs~~~~etw~~ta~~v~~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~ 614 (1281)
T KOG4222|consen 553 SGAVPASGYIIEAFSPDLGETWQTTAGRVKTTTYAIRGLKPNLSYLFLVRAENEQGISDPST 614 (1281)
T ss_pred CCccccchhHHHHhhhhhcccccccccccccceeeecCcCccceeeeeeeccccccccCCcc
Confidence 358888888874332221 334455 4666999999999999999999875
No 85
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.33 E-value=1.3e-06 Score=57.80 Aligned_cols=29 Identities=34% Similarity=0.554 Sum_probs=25.6
Q ss_pred eEEEEceeC-CCCCEEEEEEEEcCCCceEE
Q psy15979 18 HTLMIRKVV-ASDFGNYSCEATNPMGKHRA 46 (152)
Q Consensus 18 ~~L~I~~v~-~~D~G~YtC~A~N~~G~~~~ 46 (152)
+.|.|.++. .+|+|.|+|+|.|.+|...+
T Consensus 58 g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S 87 (94)
T cd05848 58 GNLIISNPSEVKDSGRYQCLATNSIGSILS 87 (94)
T ss_pred CeEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence 479999985 69999999999999998865
No 86
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.32 E-value=3.7e-06 Score=53.45 Aligned_cols=37 Identities=30% Similarity=0.528 Sum_probs=32.4
Q ss_pred CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
.....|.|.+++.+|+|.|+|.|.|..|.++.++.|.
T Consensus 48 ~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~ 84 (85)
T cd05729 48 KKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVD 84 (85)
T ss_pred CcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence 3456799999999999999999999999988877764
No 87
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.32 E-value=6.7e-07 Score=57.67 Aligned_cols=34 Identities=35% Similarity=0.513 Sum_probs=31.0
Q ss_pred EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEE
Q psy15979 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50 (152)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v 50 (152)
.+.|.|.+++.+|+|.|+|.|.|.+|..++...|
T Consensus 51 ~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l 84 (85)
T cd05754 51 NGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL 84 (85)
T ss_pred CCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence 4689999999999999999999999999987665
No 88
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.31 E-value=3e-06 Score=55.99 Aligned_cols=41 Identities=32% Similarity=0.406 Sum_probs=31.6
Q ss_pred CCcEEEEEcCCEeEEEEceeC-CCCCEEEEEEEEcCCCceEE-EEEE
Q psy15979 6 TERRIMETRGSRHTLMIRKVV-ASDFGNYSCEATNPMGKHRA-YLEL 50 (152)
Q Consensus 6 ~~r~~i~~~~~~~~L~I~~v~-~~D~G~YtC~A~N~~G~~~~-~~~v 50 (152)
++|+.+. ++.|.|.++. .+|+|.|+|+|+|.+|...+ .++|
T Consensus 49 ~~~~~~~----~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 49 NDRYSMV----GGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred CCeEEEE----CCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 4566553 3579999985 69999999999999998866 3443
No 89
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.30 E-value=2.9e-06 Score=56.02 Aligned_cols=37 Identities=30% Similarity=0.412 Sum_probs=29.5
Q ss_pred CCcEEEEEcCCEeEEEEceeC-CCCCEEEEEEEEcCCCceEE
Q psy15979 6 TERRIMETRGSRHTLMIRKVV-ASDFGNYSCEATNPMGKHRA 46 (152)
Q Consensus 6 ~~r~~i~~~~~~~~L~I~~v~-~~D~G~YtC~A~N~~G~~~~ 46 (152)
+.++.+. .+.|.|.++. .+|+|.|+|+|.|.+|...+
T Consensus 50 ~~~~~~~----~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 87 (94)
T cd05850 50 ESRYTLV----AGNLVINNPQKARDAGSYQCLAINRCGTVVS 87 (94)
T ss_pred CceEEEE----CCeEEEccCCccCcCEEEEEEEEcCcCcEEE
Confidence 3456553 2479998865 59999999999999998876
No 90
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.26 E-value=3.5e-06 Score=56.02 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=28.7
Q ss_pred CCCcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979 5 TTERRIMET-RGSRHTLMIRKVVASDFGNYSCEATN 39 (152)
Q Consensus 5 ~~~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N 39 (152)
.+.|+.+.. .....+|.|.+|+.+|+|.|+|.+..
T Consensus 48 ~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 48 RDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred eCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 457777653 33468999999999999999999998
No 91
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.25 E-value=1.1e-06 Score=58.74 Aligned_cols=39 Identities=38% Similarity=0.577 Sum_probs=30.4
Q ss_pred cCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCce
Q psy15979 4 ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH 44 (152)
Q Consensus 4 ~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~ 44 (152)
..++|..+.. ..+.|.|.+|+.+|+|+|+|.|+|.++..
T Consensus 48 ~~d~r~~~~~--~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 48 PEDGRRFVSQ--TNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred ccCCCeEEeC--CCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 3455554432 35689999999999999999999988665
No 92
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.24 E-value=3.5e-06 Score=55.86 Aligned_cols=45 Identities=29% Similarity=0.234 Sum_probs=36.3
Q ss_pred CcEEEEE---cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 7 ERRIMET---RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 7 ~r~~i~~---~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
+|+.+.. ..+..+|.|.+++.+|+|.|+|.+.|.-|..+..+.|.
T Consensus 51 ~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~ 98 (100)
T cd05713 51 GRTELLKDAIAEGSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELK 98 (100)
T ss_pred ceEEeecccccCCcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEE
Confidence 4666642 23567899999999999999999999888888877764
No 93
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.22 E-value=3.1e-06 Score=55.29 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=25.4
Q ss_pred eEEEEceeCC-CCCEEEEEEEEcCCCceEE
Q psy15979 18 HTLMIRKVVA-SDFGNYSCEATNPMGKHRA 46 (152)
Q Consensus 18 ~~L~I~~v~~-~D~G~YtC~A~N~~G~~~~ 46 (152)
+.|.|.++.. +|+|.|+|+|+|.+|.+.+
T Consensus 58 ~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 58 GNLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred CEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 4799998874 9999999999999998765
No 94
>smart00409 IG Immunoglobulin.
Probab=98.21 E-value=1e-05 Score=50.28 Aligned_cols=47 Identities=34% Similarity=0.508 Sum_probs=38.9
Q ss_pred CCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 5 ~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
.++++.+........|.|.+++.+|+|.|+|.+.|..|.....+.|.
T Consensus 38 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~ 84 (86)
T smart00409 38 ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLT 84 (86)
T ss_pred CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEE
Confidence 45677777665578899999999999999999999999887765553
No 95
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.21 E-value=1e-05 Score=50.28 Aligned_cols=47 Identities=34% Similarity=0.508 Sum_probs=38.9
Q ss_pred CCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 5 ~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
.++++.+........|.|.+++.+|+|.|+|.+.|..|.....+.|.
T Consensus 38 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~ 84 (86)
T smart00410 38 ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLT 84 (86)
T ss_pred CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEE
Confidence 45677777665578899999999999999999999999887765553
No 96
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.17 E-value=6.1e-06 Score=54.30 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=29.5
Q ss_pred CCcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979 6 TERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMG 42 (152)
Q Consensus 6 ~~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G 42 (152)
+.||.+.. .+....|.|.+++.+|+|.|+|.+.+...
T Consensus 49 ~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~ 86 (95)
T cd05717 49 DNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMPV 86 (95)
T ss_pred cCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCCC
Confidence 46787743 33456899999999999999999998653
No 97
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.16 E-value=4.3e-06 Score=55.70 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=26.1
Q ss_pred EeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRA 46 (152)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~ 46 (152)
.+.|.|.+|..+|+|.|+|+|.|..|...-
T Consensus 54 ~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y 83 (95)
T cd05897 54 STYLHIIDVSLNDSGYYTCKLQFTHEGKKY 83 (95)
T ss_pred CCEEEEEEcChhhCEEEEEEEEEeeCCEEE
Confidence 457999999999999999999999876543
No 98
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.15 E-value=1e-05 Score=53.66 Aligned_cols=38 Identities=21% Similarity=0.207 Sum_probs=30.3
Q ss_pred CCCcEEEEEc-CCEeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979 5 TTERRIMETR-GSRHTLMIRKVVASDFGNYSCEATNPMG 42 (152)
Q Consensus 5 ~~~r~~i~~~-~~~~~L~I~~v~~~D~G~YtC~A~N~~G 42 (152)
.++|+.+... ....+|.|.+++.+|+|.|+|.+.+.-+
T Consensus 48 ~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~ 86 (95)
T cd07701 48 RDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMPV 86 (95)
T ss_pred cCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeecC
Confidence 4578877433 4567899999999999999999998533
No 99
>KOG4222|consensus
Probab=98.14 E-value=1.1e-05 Score=72.60 Aligned_cols=45 Identities=33% Similarity=0.496 Sum_probs=36.0
Q ss_pred CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE---EEEEecCC
Q psy15979 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA---YLELSGKP 54 (152)
Q Consensus 7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~---~~~v~~~P 54 (152)
+++.+.+. +.|.|.|+.++|+|+|.|+|.|.+|..++ .+.|..+|
T Consensus 179 ~~~~lisg---G~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P 226 (1281)
T KOG4222|consen 179 PIIALISG---GNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKP 226 (1281)
T ss_pred eeEEEecC---CcEEEeccccCCCceeeeeecccccccccccceeeeccCC
Confidence 44555544 47999999999999999999999998887 46666665
No 100
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.10 E-value=1.3e-05 Score=52.64 Aligned_cols=40 Identities=33% Similarity=0.428 Sum_probs=29.6
Q ss_pred cEEEEEcCCEeEEEEcee-----CCCCCEEEEEEEEcC-CCceEE-EEEE
Q psy15979 8 RRIMETRGSRHTLMIRKV-----VASDFGNYSCEATNP-MGKHRA-YLEL 50 (152)
Q Consensus 8 r~~i~~~~~~~~L~I~~v-----~~~D~G~YtC~A~N~-~G~~~~-~~~v 50 (152)
++.+..+ +.|.|.++ .++|+|.|+|.|.|. +|...+ .+.|
T Consensus 47 ~~~~~~~---~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l 93 (95)
T cd05722 47 RRQQLPN---GSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARL 93 (95)
T ss_pred ceEEccC---CeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEE
Confidence 3555433 35778777 589999999999999 998855 4444
No 101
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.10 E-value=8e-06 Score=53.76 Aligned_cols=42 Identities=31% Similarity=0.487 Sum_probs=32.5
Q ss_pred CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEE-cCCCceEEEEEEe
Q psy15979 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEAT-NPMGKHRAYLELS 51 (152)
Q Consensus 6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~-N~~G~~~~~~~v~ 51 (152)
++|+.+. .+.|.|.+++++|+|.|+|.|. |..|.....++|.
T Consensus 45 ~~r~~~~----~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~ 87 (91)
T cd05871 45 EERLIHT----ERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLH 87 (91)
T ss_pred cccEEEe----cCeEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEE
Confidence 4566653 2459999999999999999998 5777777666554
No 102
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.10 E-value=1.1e-05 Score=54.15 Aligned_cols=45 Identities=27% Similarity=0.449 Sum_probs=37.2
Q ss_pred CcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEc-CCCceEEEEEEe
Q psy15979 7 ERRIMET-RGSRHTLMIRKVVASDFGNYSCEATN-PMGKHRAYLELS 51 (152)
Q Consensus 7 ~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N-~~G~~~~~~~v~ 51 (152)
+|..+.+ .-.+.+|.|.|++.+|.|.|+|...| +.|..++.+.|+
T Consensus 51 ~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~ 97 (99)
T cd05886 51 ERVTFKNPSFEDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLT 97 (99)
T ss_pred CcEEEcCCCCCcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEE
Confidence 6777653 33567899999999999999999999 799888877765
No 103
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.09 E-value=1.4e-05 Score=52.23 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=20.8
Q ss_pred eCCCCCEEEEEEEEcCCCceEE-EEEE
Q psy15979 25 VVASDFGNYSCEATNPMGKHRA-YLEL 50 (152)
Q Consensus 25 v~~~D~G~YtC~A~N~~G~~~~-~~~v 50 (152)
+..+|+|.|+|+|+|.+|.+.+ .+.|
T Consensus 71 ~~~~D~G~Y~C~a~N~~G~~~s~~~~l 97 (100)
T cd07693 71 KGRSDEGVYVCVAHNSLGEAVSRNASL 97 (100)
T ss_pred CCcCcCEEEEEEEEccccceecceEEE
Confidence 3689999999999999999543 4443
No 104
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.07 E-value=7.5e-05 Score=60.02 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=29.6
Q ss_pred EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
+..|.|.++..+|+|.|+|+|.|..|....++.|+
T Consensus 81 g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~ 115 (326)
T PHA02785 81 GSNMLILNPTQSDSGIYICITKNETYCDMMSLNLT 115 (326)
T ss_pred CceEEEcccCcccCeEEEEEEECCCcceEEEEEEE
Confidence 34588999999999999999999999877765554
No 105
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.06 E-value=1e-05 Score=54.18 Aligned_cols=45 Identities=20% Similarity=0.448 Sum_probs=36.7
Q ss_pred CcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 7 ERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 7 ~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
+|+.+.. .....+|.|.+++.+|+|.|.|.+.|..|..+..+.|.
T Consensus 56 ~R~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~ 101 (106)
T cd05877 56 GRVFLRRAHDLDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALR 101 (106)
T ss_pred CcEEecCCCCCcEEEEEccCChHHCEEEEEEEEecccceEEEEEEE
Confidence 5676642 23467899999999999999999999999888877654
No 106
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.03 E-value=5.6e-06 Score=55.02 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=28.0
Q ss_pred cCCEeEEEEceeCCCCCEEEEEEEEcCCCceE
Q psy15979 14 RGSRHTLMIRKVVASDFGNYSCEATNPMGKHR 45 (152)
Q Consensus 14 ~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~ 45 (152)
......|+|.+++.+|+|.|.|.++|..+..+
T Consensus 61 ~~g~~~L~I~~l~~sDsgtY~C~v~~~~~~~~ 92 (94)
T cd07690 61 DQGSFPLIIKNLKIEDSDTYICEVEDKKEEVE 92 (94)
T ss_pred CCCeEEEEECCCCHHHCEEEEEEECCccceEE
Confidence 44566799999999999999999999988765
No 107
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.03 E-value=2e-05 Score=52.65 Aligned_cols=45 Identities=33% Similarity=0.526 Sum_probs=35.9
Q ss_pred CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEc-CCCceEEEEEEe
Q psy15979 7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATN-PMGKHRAYLELS 51 (152)
Q Consensus 7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N-~~G~~~~~~~v~ 51 (152)
+|..+.. .....+|+|.|++.+|+|.|.|...| +.|..++.+.|.
T Consensus 51 ~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~ 98 (100)
T cd05888 51 GRVRFETPNPIADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLT 98 (100)
T ss_pred CcEEEeCCCCCCceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEE
Confidence 5666753 33577899999999999999999999 788777766654
No 108
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.02 E-value=8.1e-06 Score=54.38 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=31.7
Q ss_pred ccCCCcEEEEEcCCEeEEEEceeCCCCCE-EEEEEEEcCCCce
Q psy15979 3 LETTERRIMETRGSRHTLMIRKVVASDFG-NYSCEATNPMGKH 44 (152)
Q Consensus 3 l~~~~r~~i~~~~~~~~L~I~~v~~~D~G-~YtC~A~N~~G~~ 44 (152)
|..++|+.+.. .+.|.|.+|+.+|+| +|.|.|+|.+...
T Consensus 46 i~~~~Ri~~~~---~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 46 ITQDERVSMGQ---NGNLYFANVEEQDSHPDYICHAHFPGLRT 85 (95)
T ss_pred ccccccEEECC---CceEEEEEEehhhCCCCeEEEEEcccccc
Confidence 45678887753 368999999999999 8999999987544
No 109
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.01 E-value=5e-06 Score=54.48 Aligned_cols=36 Identities=22% Similarity=0.411 Sum_probs=27.9
Q ss_pred cccCC-CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCC
Q psy15979 2 RLETT-ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM 41 (152)
Q Consensus 2 ~l~~~-~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~ 41 (152)
+|..+ .|+.+. + ..|.|.|++.+|+|.|+|.|.+.-
T Consensus 35 ~i~~~~~r~~~~-~---~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 35 VLTPESAKYLLY-R---DGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred ECCCCCceEEEE-C---CcEEEeCCCHHHCEEEEEEEEecc
Confidence 45454 567664 2 369999999999999999999863
No 110
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=97.99 E-value=9.2e-06 Score=47.78 Aligned_cols=27 Identities=44% Similarity=0.689 Sum_probs=24.5
Q ss_pred CEeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979 16 SRHTLMIRKVVASDFGNYSCEATNPMG 42 (152)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G 42 (152)
....|.|.+++.+|+|.|+|.+.|..|
T Consensus 37 ~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 37 SGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 456899999999999999999999876
No 111
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=97.99 E-value=2.9e-05 Score=51.00 Aligned_cols=45 Identities=27% Similarity=0.415 Sum_probs=34.5
Q ss_pred CcEEEEEcC-CEeEEEEceeCCCCCEEEEEEEEc-CCCceEEEEEEe
Q psy15979 7 ERRIMETRG-SRHTLMIRKVVASDFGNYSCEATN-PMGKHRAYLELS 51 (152)
Q Consensus 7 ~r~~i~~~~-~~~~L~I~~v~~~D~G~YtC~A~N-~~G~~~~~~~v~ 51 (152)
.|..+.... ...+|+|.+++.+|+|.|.|.+.+ ..|+.+..+.|.
T Consensus 50 ~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~ 96 (98)
T cd05718 50 GRVSFLNSSLEDATISISNLRLEDEGNYICEFATFPQGNRQKVTTLT 96 (98)
T ss_pred ceEEEeCCCCCceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEE
Confidence 455544221 567899999999999999999875 788888877664
No 112
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=97.93 E-value=2.7e-05 Score=51.80 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=30.4
Q ss_pred CCCcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979 5 TTERRIMET-RGSRHTLMIRKVVASDFGNYSCEATN 39 (152)
Q Consensus 5 ~~~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N 39 (152)
.++||.+.. .+...+|.|.+++.+|+|.|.|.+..
T Consensus 48 ~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 48 KDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 578998876 56677899999999999999999875
No 113
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=97.92 E-value=2.4e-05 Score=52.45 Aligned_cols=38 Identities=24% Similarity=0.446 Sum_probs=32.2
Q ss_pred cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 14 RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 14 ~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
.....+|+|.+++.+|+|.|.|.+.|..+..+..+.|.
T Consensus 64 ~~~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~ 101 (106)
T cd05714 64 DPGDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELE 101 (106)
T ss_pred CCCcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEE
Confidence 34678899999999999999999999888777766554
No 114
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.92 E-value=2.9e-05 Score=53.22 Aligned_cols=45 Identities=24% Similarity=0.389 Sum_probs=35.7
Q ss_pred CcEEEEE---cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 7 ERRIMET---RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 7 ~r~~i~~---~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
+|+.+.. ...+.+|+|.+++.+|+|.|.|...+.+......+.|.
T Consensus 60 ~R~sl~~~~~~~~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~ 107 (112)
T cd05900 60 DRVSLPNYPAIPSDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQ 107 (112)
T ss_pred CeEEecccCCCCCCcEEEEeecccccCEEEEEEEecCCCCceeEEEEE
Confidence 4777754 44678999999999999999999998877666655443
No 115
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=97.90 E-value=2.4e-05 Score=50.41 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=25.0
Q ss_pred CEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46 (152)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~ 46 (152)
..+.|.|.++ .|.|.|.|+|+|.+|...+
T Consensus 47 ~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 47 SPSVLNVPGL--NETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred CCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence 4568999998 4889999999999998776
No 116
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.86 E-value=5e-05 Score=50.64 Aligned_cols=45 Identities=27% Similarity=0.409 Sum_probs=35.9
Q ss_pred CcEEEE-EcCCEeEEEEceeCCCCCEEEEEEEE-cCCCceEEEEEEe
Q psy15979 7 ERRIME-TRGSRHTLMIRKVVASDFGNYSCEAT-NPMGKHRAYLELS 51 (152)
Q Consensus 7 ~r~~i~-~~~~~~~L~I~~v~~~D~G~YtC~A~-N~~G~~~~~~~v~ 51 (152)
+|..+. ....+.+|.|.||+.+|.|.|+|... .+.|+.++++.|.
T Consensus 48 ~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~ 94 (96)
T cd05887 48 GRVSFKNYSLLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVT 94 (96)
T ss_pred CcEEEcCCCCCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEE
Confidence 566664 23457899999999999999999864 5899999887664
No 117
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=97.83 E-value=6.4e-05 Score=50.89 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=32.6
Q ss_pred CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCC-CceEEEEEE
Q psy15979 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM-GKHRAYLEL 50 (152)
Q Consensus 6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~-G~~~~~~~v 50 (152)
.+|..+..+ ++|.|++++.+|+|.|+|.+.|.- ...+..++|
T Consensus 61 ~gR~~~~~n---gSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l 103 (105)
T cd05774 61 SGRETIYPN---GSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHL 103 (105)
T ss_pred CCcEEEeCC---CcEEEecCCcccCEEEEEEEEeCCccEEEEEEEE
Confidence 467777543 489999999999999999999977 455555554
No 118
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.83 E-value=7.2e-05 Score=49.85 Aligned_cols=45 Identities=20% Similarity=0.374 Sum_probs=36.7
Q ss_pred CcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEc-CCCceEEEEEEe
Q psy15979 7 ERRIMET-RGSRHTLMIRKVVASDFGNYSCEATN-PMGKHRAYLELS 51 (152)
Q Consensus 7 ~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N-~~G~~~~~~~v~ 51 (152)
+|..+.. ...+.+|.|.||+.+|.|.|+|...+ +.|..++.+.|.
T Consensus 48 ~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~~ 94 (96)
T cd05889 48 GRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEVV 94 (96)
T ss_pred CeEEEecCCCCccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEEE
Confidence 5777653 23568999999999999999998888 599999888764
No 119
>KOG4194|consensus
Probab=97.80 E-value=0.00015 Score=62.27 Aligned_cols=106 Identities=17% Similarity=0.251 Sum_probs=63.2
Q ss_pred CEeEEEEceeCCCCCEEEEEEEEcCCCceEE-EEEEecCCCCceeecCCCC---CCCCeEEEEEEecCCCCcceEEEEEE
Q psy15979 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELSGKPNPAIFRSHPQG---RLPNSYNITWMVSSYTPLEEFKIKYR 91 (152)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~~~v~~~P~p~~~~~~~~~---~~~~~~~L~W~~~~~~pi~~y~~~~r 91 (152)
..+.|.+.||...|+|.|.|++.|.+|+.-+ ..+++..-.| .|...|.. ..+....|.|.+.|.+ -.+..|+.
T Consensus 572 ~~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~P-sFtktP~dltl~tg~mArl~CaAtG~P-~PeIawqk- 648 (873)
T KOG4194|consen 572 YTAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAP-SFTKTPEDLTLRTGQMARLECAATGHP-RPEIAWQK- 648 (873)
T ss_pred hhheeeeeeeecccCceEEEEEecccCcchhheeEEEeeccC-ccccCcccceeecccceeeeeeccCCC-Ccceeehh-
Confidence 4567999999999999999999999998876 3444432222 22222211 1245566777665543 11222222
Q ss_pred ECCCCC------------CCc-----ceEEecCCCeEEEEEEEEcCCCCCCCC
Q psy15979 92 KIPGNE------------PSP-----MSNQLTGTNQYQNRRLVRKRFDRGNST 127 (152)
Q Consensus 92 ~~~~~~------------~~~-----~~~~L~~~~~Y~~rV~A~N~~G~g~~s 127 (152)
.+..+ +.+ ....+++.+.|.| .|.|..|.-...
T Consensus 649 -dggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC--~A~n~AG~isan 698 (873)
T KOG4194|consen 649 -DGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTC--TAQNVAGQISAN 698 (873)
T ss_pred -cCCCCCchhhhheeeecCCCCEEEEecccccccceeEE--eeeccccceeec
Confidence 21111 122 1224566899999 899999865433
No 120
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=97.77 E-value=6.5e-05 Score=51.09 Aligned_cols=44 Identities=23% Similarity=0.379 Sum_probs=33.1
Q ss_pred CcEEEEE---cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEE
Q psy15979 7 ERRIMET---RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50 (152)
Q Consensus 7 ~r~~i~~---~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v 50 (152)
+|+.+.+ .....+|+|.+++.+|+|.|.|......+..+..+.|
T Consensus 58 gR~~~~~~~~~~~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l 104 (110)
T cd05878 58 GRVSLPNYPENRGDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPL 104 (110)
T ss_pred CeEEeccCCCCCCcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEE
Confidence 5777642 2356789999999999999999998875555555444
No 121
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.72 E-value=3.7e-05 Score=49.60 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=26.3
Q ss_pred EeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRA 46 (152)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~ 46 (152)
...|.|.+++.+|+|.|+|.|.|..|...+
T Consensus 47 ~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s 76 (83)
T cd05753 47 NSNLSIPQATLSDSGSYHCSGIIGSYDYSS 76 (83)
T ss_pred CceEEECccCHHHCEEEEEEEEeCCceecC
Confidence 467999999999999999999999985443
No 122
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=97.71 E-value=3.2e-05 Score=47.43 Aligned_cols=26 Identities=46% Similarity=0.673 Sum_probs=23.3
Q ss_pred cCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979 14 RGSRHTLMIRKVVASDFGNYSCEATN 39 (152)
Q Consensus 14 ~~~~~~L~I~~v~~~D~G~YtC~A~N 39 (152)
....+.|.|.++..+|.|.|+|+|+|
T Consensus 50 ~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 50 SSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred cceeeEEEEccCCHHhCcEEEEEEEC
Confidence 34567899999999999999999998
No 123
>KOG0196|consensus
Probab=97.70 E-value=0.00068 Score=59.90 Aligned_cols=113 Identities=15% Similarity=0.226 Sum_probs=71.9
Q ss_pred eEEEEceeCCCCCEEEEEEEEcCCCce------EEEEEEe-cCCCC-ceeecCCCCCCCCeEEEEEEecC--CCCcceEE
Q psy15979 18 HTLMIRKVVASDFGNYSCEATNPMGKH------RAYLELS-GKPNP-AIFRSHPQGRLPNSYNITWMVSS--YTPLEEFK 87 (152)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~------~~~~~v~-~~P~p-~~~~~~~~~~~~~~~~L~W~~~~--~~pi~~y~ 87 (152)
..+.|.++...---.+...|.|.+-.- .+.+.++ ....| +...........+++.|+|..+. ...|+.|.
T Consensus 398 ~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png~ildYE 477 (996)
T KOG0196|consen 398 TSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNGVILDYE 477 (996)
T ss_pred ceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCCCcceeEE
Confidence 457777777666566667788865422 1224443 11112 11111112345799999999753 34689999
Q ss_pred EEEEECCCCCCC-------c---ceEEecCCCeEEEEEEEEcCCCCCCCCCCc
Q psy15979 88 IKYRKIPGNEPS-------P---MSNQLTGTNQYQNRRLVRKRFDRGNSTNGG 130 (152)
Q Consensus 88 ~~~r~~~~~~~~-------~---~~~~L~~~~~Y~~rV~A~N~~G~g~~s~~~ 130 (152)
+.|.+...++.. . ....|.+++.|.|+|+|+...|.|..+...
T Consensus 478 vky~ek~~~e~~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~ 530 (996)
T KOG0196|consen 478 VKYYEKDEDERSYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKH 530 (996)
T ss_pred EEEeeccccccceeEEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCce
Confidence 999988644311 1 123577799999999999999999887644
No 124
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=97.69 E-value=0.00015 Score=46.92 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=28.8
Q ss_pred CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceE
Q psy15979 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR 45 (152)
Q Consensus 7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~ 45 (152)
+|+.+..+ .+|.|.+++.+|+|.|+|...+..|...
T Consensus 49 ~R~~~~~~---~sL~I~~l~~~DsG~Y~c~v~~~~~~~~ 84 (92)
T cd05741 49 GRETIYPN---GSLLIQNLTKEDSGTYTLQIISTNGVTE 84 (92)
T ss_pred CeEEEcCC---ceEEEccCCchhcEEEEEEEEcCCCcEE
Confidence 56666432 6899999999999999999998875443
No 125
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=97.69 E-value=5.7e-05 Score=49.00 Aligned_cols=33 Identities=30% Similarity=0.491 Sum_probs=26.1
Q ss_pred EEEEceeCCCCCEEEEEEEEcCC-CceEEEEEEe
Q psy15979 19 TLMIRKVVASDFGNYSCEATNPM-GKHRAYLELS 51 (152)
Q Consensus 19 ~L~I~~v~~~D~G~YtC~A~N~~-G~~~~~~~v~ 51 (152)
.|.|.+++.+|+|.|+|.|.|.. +....++.|.
T Consensus 52 ~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~ 85 (89)
T cd04979 52 GLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLN 85 (89)
T ss_pred CEEEccCCHHHCEEEEEEEecCccceeEeEEEEE
Confidence 49999999999999999999764 4444455554
No 126
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=97.68 E-value=6.7e-05 Score=57.52 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=31.3
Q ss_pred cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG 42 (152)
Q Consensus 2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G 42 (152)
+|..++|+++.. +++.|.|.+|+.+|+|.|+|+|+...+
T Consensus 174 ~l~~~~r~~~~~--~~~~L~I~~V~~~DsG~YtC~a~~~~~ 212 (227)
T PHA02826 174 IVLYTDRIQLRN--NNSTLVIKSATHDDSGIYTCNLRFNKN 212 (227)
T ss_pred ECCCCCCEEEeC--CCCEEEECcCCHHhCEEEEEEEEEeEC
Confidence 455667777653 346899999999999999999999753
No 127
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=97.68 E-value=0.00012 Score=48.61 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=30.3
Q ss_pred CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46 (152)
Q Consensus 7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~ 46 (152)
+|+.+ .....+|+|.+++.+|+|.|.|...+..|....
T Consensus 52 ~R~~~--~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~ 89 (97)
T cd05775 52 ERVNF--SQNDYSLQISNLKMEDAGSYRAEINTKNGVTIT 89 (97)
T ss_pred eeEEe--cCCceeEEECCCchHHCEEEEEEEEcCCCCeEE
Confidence 35555 344678999999999999999999998876543
No 128
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.68 E-value=8.4e-05 Score=49.75 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=30.8
Q ss_pred CCCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979 5 TTERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMG 42 (152)
Q Consensus 5 ~~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G 42 (152)
..+|+.+... .....|.|.+++.+|+|.|.|.+.+..|
T Consensus 55 ~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~~ 94 (109)
T cd04983 55 EKGRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSESGG 94 (109)
T ss_pred cCCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence 3578877543 3678899999999999999999998654
No 129
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.66 E-value=7.2e-05 Score=49.53 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=30.9
Q ss_pred CCcEEEEEcC--CEeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979 6 TERRIMETRG--SRHTLMIRKVVASDFGNYSCEATNPMG 42 (152)
Q Consensus 6 ~~r~~i~~~~--~~~~L~I~~v~~~D~G~YtC~A~N~~G 42 (152)
.+|+.+.... ...+|+|.+++.+|+|.|.|.+.+..+
T Consensus 53 ~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 53 KGRFSGTRDSSKSSFTLTISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred CCcEEEEEeccCCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence 4677776443 677899999999999999999998776
No 130
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=97.63 E-value=0.00012 Score=49.20 Aligned_cols=37 Identities=11% Similarity=0.149 Sum_probs=33.3
Q ss_pred CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG 52 (152)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~ 52 (152)
..+.|.+..++.+|+|.|||.|.|..+.++.++.|..
T Consensus 63 Y~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v 99 (101)
T cd05860 63 YVSELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYV 99 (101)
T ss_pred EEEEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEE
Confidence 4578999999999999999999999999999877753
No 131
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.61 E-value=5.1e-05 Score=48.48 Aligned_cols=24 Identities=25% Similarity=0.596 Sum_probs=21.5
Q ss_pred CEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979 16 SRHTLMIRKVVASDFGNYSCEATNP 40 (152)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~ 40 (152)
..+.|.|.++ .+|+|.|+|.|.|.
T Consensus 45 ~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 45 TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred cCCeEEEeec-ccCCEEeEEECCCC
Confidence 4568999999 99999999999986
No 132
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=97.60 E-value=0.00016 Score=48.85 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=30.4
Q ss_pred EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
...|.|.++..+|+|.|+|++.|.-...+..+.|+
T Consensus 69 ~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C~~~~i~l~ 103 (104)
T cd05896 69 EDSIWFRPAELQDSGLYTCVLRNSTYCMKVSMSLT 103 (104)
T ss_pred CCEEEEEeCChhhCeEEEEEECCCCcceEEEEEEE
Confidence 45799999999999999999999988877776654
No 133
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=97.53 E-value=0.00013 Score=43.92 Aligned_cols=18 Identities=39% Similarity=0.739 Sum_probs=17.5
Q ss_pred EEEceeCCCCCEEEEEEE
Q psy15979 20 LMIRKVVASDFGNYSCEA 37 (152)
Q Consensus 20 L~I~~v~~~D~G~YtC~A 37 (152)
|.|.+++.+|+|.|+|.|
T Consensus 47 L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 47 LTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp EEESSCTGGGTEEEEEEE
T ss_pred EEEccCCHHHCEEEEEEC
Confidence 999999999999999986
No 134
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.49 E-value=0.0004 Score=47.34 Aligned_cols=37 Identities=22% Similarity=0.422 Sum_probs=27.9
Q ss_pred CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcCCCc
Q psy15979 7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGK 43 (152)
Q Consensus 7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~ 43 (152)
+|+.+.. ..+..+|+|.+++.+|+|.|.|.+.|.-+.
T Consensus 67 ~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 67 DRVEWVGNPSRKDASIVIHNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred CcEEEecCCcCCeeEEEEeeCCcccCEEEEEEEEeCCCC
Confidence 3444532 234578999999999999999999986543
No 135
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=97.48 E-value=0.00024 Score=48.95 Aligned_cols=36 Identities=22% Similarity=0.415 Sum_probs=29.4
Q ss_pred CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979 7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMG 42 (152)
Q Consensus 7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G 42 (152)
+|+.+.. ...+.+|.|.|++.+|.|.|+|.+.|.-+
T Consensus 67 ~Rv~f~g~~~~~daSI~I~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 67 ERIEWVGNPSRKDGSIVIHNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred CceEEeCCCCcCeeEEEEccCCcccCEEEEEEEEcCCC
Confidence 4777642 23567899999999999999999999755
No 136
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.45 E-value=0.00024 Score=46.91 Aligned_cols=35 Identities=20% Similarity=0.329 Sum_probs=30.0
Q ss_pred CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP 40 (152)
Q Consensus 6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~ 40 (152)
.+|+.+...+....|+|.+++.+|+|.|.|.+.+.
T Consensus 51 ~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 85 (98)
T cd04984 51 PDRFSGSKSGNTASLTISGAQTEDEADYYCQVWDS 85 (98)
T ss_pred CCCEEEEccCCEEEEEECCCChhhCEEEEEEEccC
Confidence 46888877767888999999999999999988763
No 137
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.44 E-value=0.00057 Score=47.18 Aligned_cols=45 Identities=27% Similarity=0.389 Sum_probs=35.2
Q ss_pred CcEEEEEc---CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 7 ERRIMETR---GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 7 ~r~~i~~~---~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
+|..+.+. .++-+|.|.+++.+|+|.|.|...+.....+..+.|.
T Consensus 65 gRv~l~~~~~~~g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~ 112 (117)
T cd05901 65 GRVSVPSHPEDQGDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLD 112 (117)
T ss_pred CcEEeeccCCcCCceEEEEcccccccCEEEEEEEEECCcccEEEEEEE
Confidence 46666432 2468899999999999999999999888777765554
No 138
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.43 E-value=0.00036 Score=47.62 Aligned_cols=45 Identities=20% Similarity=0.328 Sum_probs=34.3
Q ss_pred CcEEEEEc---CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 7 ERRIMETR---GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 7 ~r~~i~~~---~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
+|..+..+ ...-+|.|.||+.+|+|.|.|.........+..++|.
T Consensus 58 gRvsl~~~~~~~~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~ 105 (110)
T cd05902 58 GRVSLPGYPKNRYNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLE 105 (110)
T ss_pred cEEEeecCCCCCceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEE
Confidence 56777542 2567899999999999999999998765566655543
No 139
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=97.42 E-value=0.00018 Score=46.94 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=31.3
Q ss_pred cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46 (152)
Q Consensus 2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~ 46 (152)
+|..|+|+.....+ |.|.+++.+|+|.|.|.|. +.|-...
T Consensus 35 ~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~-E~gf~~~ 74 (85)
T cd05872 35 PLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSE-EEGFQQL 74 (85)
T ss_pred ccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEe-cCCCeEE
Confidence 46677888876554 8899999999999999887 5564444
No 140
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.36 E-value=0.00031 Score=47.36 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=29.4
Q ss_pred CCcEEEEEc-CCEeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979 6 TERRIMETR-GSRHTLMIRKVVASDFGNYSCEATNPMG 42 (152)
Q Consensus 6 ~~r~~i~~~-~~~~~L~I~~v~~~D~G~YtC~A~N~~G 42 (152)
++|+.+... .....|.|.+++.+|+|.|.|.+.+..|
T Consensus 59 ~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~~~ 96 (110)
T cd05899 59 KDRFSASRPSLTRSSLTIKSAEPEDSAVYLCASSLGGG 96 (110)
T ss_pred CCceEEECcCCCccEEEECCCChhhCEEEEEEeeCCCC
Confidence 467776533 2567899999999999999999987543
No 141
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.35 E-value=0.00027 Score=47.35 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=28.5
Q ss_pred CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP 40 (152)
Q Consensus 7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~ 40 (152)
+|+.+...+....|.|.+++.+|+|.|.|.+.|.
T Consensus 60 ~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 60 SRFSGSGSGTDFTLTISRVEPEDAAVYYCQQYGT 93 (106)
T ss_pred CCEEEeccCCEEEEEECCCChHHCEEEEEEEeCC
Confidence 5777765556778999999999999999998764
No 142
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.34 E-value=0.00041 Score=45.80 Aligned_cols=45 Identities=24% Similarity=0.372 Sum_probs=33.0
Q ss_pred CcEEEE-EcCCEeEEEEceeCCCCCEEEEEEEEc-CCCceEEEEEEe
Q psy15979 7 ERRIME-TRGSRHTLMIRKVVASDFGNYSCEATN-PMGKHRAYLELS 51 (152)
Q Consensus 7 ~r~~i~-~~~~~~~L~I~~v~~~D~G~YtC~A~N-~~G~~~~~~~v~ 51 (152)
+|+.+. ......+|+|.+++.+|+|.|.|...+ +.|.....+.|+
T Consensus 49 ~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~ 95 (97)
T cd05846 49 RRRSITSLGLNSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLT 95 (97)
T ss_pred CeEEEcCCCCCccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEE
Confidence 344443 344678899999999999999998764 677766655554
No 143
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.33 E-value=0.00028 Score=48.28 Aligned_cols=29 Identities=24% Similarity=0.571 Sum_probs=25.3
Q ss_pred CCEeEEEEceeCCCCCEEEEEEEEcCCCc
Q psy15979 15 GSRHTLMIRKVVASDFGNYSCEATNPMGK 43 (152)
Q Consensus 15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~ 43 (152)
....+|.|.+++.+|+|.|.|.+.|.-+.
T Consensus 76 ~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 76 RRDASILIWQLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred CCceEEEEeeCChhhCEEEEEEEEeCCCC
Confidence 35678999999999999999999997664
No 144
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.29 E-value=0.00073 Score=44.67 Aligned_cols=35 Identities=23% Similarity=0.454 Sum_probs=28.5
Q ss_pred CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979 6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNP 40 (152)
Q Consensus 6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~ 40 (152)
.+|+.+..+ ....+|.|.+++.+|+|.|.|.....
T Consensus 65 ~~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 65 SGRFTFSGNGSQNNFSLTIKNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp TTTEEEEEETTTTEEEEEESSESGGGEEEEEEEEEES
T ss_pred eeeeeeeecccCCeEEEEECCCCcCcCEEEEEEEEEC
Confidence 356666543 35788999999999999999999887
No 145
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.20 E-value=0.00043 Score=43.19 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=26.3
Q ss_pred CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEE
Q psy15979 6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCE 36 (152)
Q Consensus 6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~ 36 (152)
.+|+.+... .+..+|.|.+++.+|+|.|.|.
T Consensus 48 ~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 48 KGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 468877654 6778899999999999999995
No 146
>PHA02633 hypothetical protein; Provisional
Probab=97.18 E-value=0.00095 Score=40.74 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=31.7
Q ss_pred CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecC
Q psy15979 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK 53 (152)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~ 53 (152)
+...|-|.++..+|+|.|.|+..|.-=..+.++.|+.-
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~ 53 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC 53 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence 55679999999999999999999987777777776643
No 147
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.17 E-value=0.00072 Score=45.85 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=28.4
Q ss_pred CCcEEEEEcC--CEeEEEEceeCCCCCEEEEEEEEc
Q psy15979 6 TERRIMETRG--SRHTLMIRKVVASDFGNYSCEATN 39 (152)
Q Consensus 6 ~~r~~i~~~~--~~~~L~I~~v~~~D~G~YtC~A~N 39 (152)
..|+.+.... ....|+|.+++.+|+|.|.|.+..
T Consensus 63 ~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 63 KNKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYWE 98 (116)
T ss_pred CCCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEec
Confidence 4688876544 678899999999999999999864
No 148
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.02 E-value=0.00087 Score=44.94 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN 39 (152)
Q Consensus 6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N 39 (152)
..|+.+........|+|.+++.+|+|.|.|...+
T Consensus 57 ~~rf~~~~~~~~~~L~I~~~~~sDsgtY~Ca~~~ 90 (104)
T cd05720 57 SKRFSGSRSSNSFVLTLKNFQKENEGYYFCSVAS 90 (104)
T ss_pred CceEEEEecCCEEEEEECCCCHHHCEEEEEEEcc
Confidence 4577776656778899999999999999998764
No 149
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=97.01 E-value=0.00076 Score=41.81 Aligned_cols=31 Identities=35% Similarity=0.646 Sum_probs=24.4
Q ss_pred EEEceeCCCCCEEEEEEEEcCCCc-eEEEEEE
Q psy15979 20 LMIRKVVASDFGNYSCEATNPMGK-HRAYLEL 50 (152)
Q Consensus 20 L~I~~v~~~D~G~YtC~A~N~~G~-~~~~~~v 50 (152)
|.|.++..+|.|.|+|.|.|..|. ....+.|
T Consensus 47 ~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v 78 (80)
T PF13895_consen 47 LFIPNVSPEDSGNYTCRASNGSGSNTSTSVNV 78 (80)
T ss_dssp EEESSEEGGGTEEEEEEEEETTEEEEEEEEEE
T ss_pred eeeeeeccccCEEEEEEEEeCCCCeEeeeEEe
Confidence 788999999999999999996653 3334544
No 150
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=96.93 E-value=0.0094 Score=36.76 Aligned_cols=61 Identities=16% Similarity=0.281 Sum_probs=43.4
Q ss_pred CCeEEEEEEecCC--CCcceEEEEEEECCCCC-----C---CcceE---EecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979 68 PNSYNITWMVSSY--TPLEEFKIKYRKIPGNE-----P---SPMSN---QLTGTNQYQNRRLVRKRFDRGNSTN 128 (152)
Q Consensus 68 ~~~~~L~W~~~~~--~pi~~y~~~~r~~~~~~-----~---~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~ 128 (152)
..++.+.|..... ..+..|.+++....... . ....+ .|.+++.|.|+|.|.+.-|+|.++.
T Consensus 14 ~~~~~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~~~~~~~s~ 87 (93)
T cd00063 14 STSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGESPPSE 87 (93)
T ss_pred CCEEEEEECCCCCCCCcceeEEEEEeeCCCCCCEEeeccCCcccEEEEccccCCCEEEEEEEEECCCccCCCcc
Confidence 5889999997543 25678999988754222 1 11223 3666999999999999999987765
No 151
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=96.90 E-value=0.0015 Score=44.76 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=27.7
Q ss_pred CcEEEE--EcCCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979 7 ERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNP 40 (152)
Q Consensus 7 ~r~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~ 40 (152)
+|+.+. ......+|.|.+++.+|+|.|.|..+..
T Consensus 67 gR~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 67 GRFRLLGDLGKKNCSLLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccEEEecCCCCCEEEEEEccCChhhCeEEEEEEEcC
Confidence 577774 2456788999999999999999988763
No 152
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=96.82 E-value=0.0011 Score=43.21 Aligned_cols=26 Identities=15% Similarity=0.341 Sum_probs=22.9
Q ss_pred CCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979 15 GSRHTLMIRKVVASDFGNYSCEATNP 40 (152)
Q Consensus 15 ~~~~~L~I~~v~~~D~G~YtC~A~N~ 40 (152)
+....|.|.+|+.+|+|.|+|.+.|.
T Consensus 50 ~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 50 QNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred ceeEEEEccCCChhHCEEEEEEEECC
Confidence 34567999999999999999999986
No 153
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.81 E-value=0.0017 Score=44.13 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=28.3
Q ss_pred CCcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979 6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATN 39 (152)
Q Consensus 6 ~~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N 39 (152)
.+|+.+.. .....+|+|.+++.+|+|.|.|.+.+
T Consensus 58 ~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~ 93 (116)
T cd07706 58 KGRYSVNFQKAQKSISLTISALQLEDSAKYFCALST 93 (116)
T ss_pred CCeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEEC
Confidence 47888863 34577899999999999999999885
No 154
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=96.79 E-value=0.0018 Score=43.54 Aligned_cols=33 Identities=30% Similarity=0.473 Sum_probs=26.2
Q ss_pred CcEEEE--EcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979 7 ERRIME--TRGSRHTLMIRKVVASDFGNYSCEATN 39 (152)
Q Consensus 7 ~r~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N 39 (152)
+|+.+. ..+....|+|.+++.+|+|.|.|...+
T Consensus 59 ~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~ 93 (107)
T cd07700 59 EKFSIRVTSDSSRYRLHINRVKPEDSGTYFCMTVG 93 (107)
T ss_pred CcEEEEEECCCCEEEEEECCCCHHHCEEEEEeEcC
Confidence 577653 344567899999999999999999864
No 155
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=96.62 E-value=0.0028 Score=41.56 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=28.8
Q ss_pred CCcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcCC
Q psy15979 6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPM 41 (152)
Q Consensus 6 ~~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~ 41 (152)
.+|+.+.. ......|+|.+++.+|+|.|.|.+.+..
T Consensus 50 ~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 87 (98)
T cd05716 50 EGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGVGDDG 87 (98)
T ss_pred CCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEcccCC
Confidence 46777753 3456789999999999999999988754
No 156
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=96.56 E-value=0.003 Score=40.65 Aligned_cols=28 Identities=25% Similarity=0.221 Sum_probs=25.1
Q ss_pred EeEEEEceeCCCCCEEEEEEEEcCCCce
Q psy15979 17 RHTLMIRKVVASDFGNYSCEATNPMGKH 44 (152)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~ 44 (152)
.++|.|.....+|.+.|+|.|.|.++..
T Consensus 42 ~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 42 SNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 4579999999999999999999998864
No 157
>PHA03376 BARF1; Provisional
Probab=96.38 E-value=0.0066 Score=45.37 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=29.6
Q ss_pred CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP 40 (152)
Q Consensus 6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~ 40 (152)
-.|+.|.++.++-+|.|.+++.+|.|.|+|+.+-.
T Consensus 75 RGrtD~~~~~gnvsLvI~~l~lSDdGtY~C~fQkg 109 (221)
T PHA03376 75 RGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLG 109 (221)
T ss_pred ccEEEEEecCCeEEEEEEeeeecCCceEEEEEEcC
Confidence 35677777778889999999999999999988754
No 158
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.32 E-value=0.0089 Score=34.53 Aligned_cols=29 Identities=38% Similarity=0.636 Sum_probs=24.6
Q ss_pred CCEeEEEEceeCCCCCEEEEEEEEcCCCc
Q psy15979 15 GSRHTLMIRKVVASDFGNYSCEATNPMGK 43 (152)
Q Consensus 15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~ 43 (152)
.....|.|.+++.+|.|.|+|.+.+..+.
T Consensus 40 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 68 (74)
T cd00096 40 SGSSTLTISNVTLEDSGTYTCVASNSAGT 68 (74)
T ss_pred eeEEEEEECccCcccCcEEEEEEecCcCc
Confidence 34567999999999999999999987643
No 159
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=96.10 E-value=0.0057 Score=45.43 Aligned_cols=41 Identities=17% Similarity=0.269 Sum_probs=30.5
Q ss_pred CcEEE-EEcCCEeEEEEceeCCCCCEEEEEEEEc-CCC-ceEEE
Q psy15979 7 ERRIM-ETRGSRHTLMIRKVVASDFGNYSCEATN-PMG-KHRAY 47 (152)
Q Consensus 7 ~r~~i-~~~~~~~~L~I~~v~~~D~G~YtC~A~N-~~G-~~~~~ 47 (152)
+|+.+ ...-..+.|+|.+|+.+|+|.|+|...- +.| ..+..
T Consensus 73 ~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt 116 (189)
T PHA02987 73 NKIEYLSKSFNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGV 116 (189)
T ss_pred CeEEEeccCCCcceEEEEeCChhhCeEEEEEEEecCCCCCceeE
Confidence 47774 4455678999999999999999997654 456 44444
No 160
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=95.95 E-value=0.012 Score=37.29 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=21.6
Q ss_pred EeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979 17 RHTLMIRKVVASDFGNYSCEATNPMG 42 (152)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G 42 (152)
.+.|.|.....+|.|.|+|+|+|..-
T Consensus 45 ~s~L~i~~~~~~~~~~y~C~a~n~~l 70 (82)
T cd05759 45 VSTLPITPSDHDTGRTFTCRARNEAL 70 (82)
T ss_pred EEEEEEeCceecCCCEEEEEEcCccC
Confidence 35788888888899999999999653
No 161
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.71 E-value=0.013 Score=45.70 Aligned_cols=37 Identities=22% Similarity=0.335 Sum_probs=29.3
Q ss_pred cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCC
Q psy15979 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM 41 (152)
Q Consensus 2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~ 41 (152)
+|....++.|+.+| .|.|.+.+++++|.|+|..+=..
T Consensus 24 ~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 24 PLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred ccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEEe
Confidence 35556677887554 69999999999999999877543
No 162
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=95.61 E-value=0.014 Score=39.86 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=26.3
Q ss_pred CcEEEEEcC--CEeEEEEceeCCCCCEEEEEEEEc
Q psy15979 7 ERRIMETRG--SRHTLMIRKVVASDFGNYSCEATN 39 (152)
Q Consensus 7 ~r~~i~~~~--~~~~L~I~~v~~~D~G~YtC~A~N 39 (152)
+|+.+.... ....|+|.+++.+|+|.|-|.+..
T Consensus 63 ~rf~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 63 GRFTITRDTSKSTVYLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred CcEEEEEEccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence 577776432 445799999999999999998875
No 163
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=95.44 E-value=0.071 Score=31.61 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=34.1
Q ss_pred CCeEEEEEEecCCCCcceEEEEEEECCCC---C-------CCcceE---EecCCCeEEEEEEEEcCCCCC
Q psy15979 68 PNSYNITWMVSSYTPLEEFKIKYRKIPGN---E-------PSPMSN---QLTGTNQYQNRRLVRKRFDRG 124 (152)
Q Consensus 68 ~~~~~L~W~~~~~~pi~~y~~~~r~~~~~---~-------~~~~~~---~L~~~~~Y~~rV~A~N~~G~g 124 (152)
..++.++|..+.......|.+.|...... . .....+ .|.+++.|.|+|.|.|..|.+
T Consensus 14 ~~~~~v~W~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a~~~~g~~ 83 (83)
T smart00060 14 STSVTLSWEPPPDDGITGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGAGEG 83 (83)
T ss_pred CCEEEEEECCCCCCCCCccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEEEcccCCC
Confidence 35889999854322114566666543211 0 111223 466689999999999986653
No 164
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=94.94 E-value=0.11 Score=34.08 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=21.7
Q ss_pred CCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979 15 GSRHTLMIRKVVASDFGNYSCEATN 39 (152)
Q Consensus 15 ~~~~~L~I~~v~~~D~G~YtC~A~N 39 (152)
.+..+|.+..+...|+|.|+|...-
T Consensus 48 ~~~ktL~~~qv~~qdSG~WtC~V~~ 72 (88)
T cd07694 48 QDKKTLNLVQLGPNDSGTWDCIVSV 72 (88)
T ss_pred CCccEEEeceeCcccCCEEEEEEEE
Confidence 3567899999999999999998863
No 165
>KOG4367|consensus
Probab=94.54 E-value=0.036 Score=46.18 Aligned_cols=79 Identities=14% Similarity=0.226 Sum_probs=53.8
Q ss_pred CCCceeecCCCCCCCCeEEEEEEec--CCCCcceEEEEEEECCCCC-----CCc-ceEEecC---CCeEEEEEEEEcCCC
Q psy15979 54 PNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNE-----PSP-MSNQLTG---TNQYQNRRLVRKRFD 122 (152)
Q Consensus 54 P~p~~~~~~~~~~~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~~-----~~~-~~~~L~~---~~~Y~~rV~A~N~~G 122 (152)
|..|++.........++++|.|..+ +..|..+|.++.-.-+.+. .+. .--++.+ ++.|..||.|.|+.|
T Consensus 438 patpilq~~ec~t~nns~t~~wkqp~~~~~~~dg~~leld~g~~g~frevy~g~etmctvdglhfns~y~arvka~n~tg 517 (699)
T KOG4367|consen 438 PATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTG 517 (699)
T ss_pred CCCceeehhhhhccCCceEEEeecCCCCCCCCcceEEEeecCCCCceeEEEecCceeEEecceecchhHHHHHHHhhccC
Confidence 3444444434444568999999954 4568899999875543332 111 2235555 899999999999999
Q ss_pred CCCCCCCccc
Q psy15979 123 RGNSTNGGLI 132 (152)
Q Consensus 123 ~g~~s~~~~~ 132 (152)
.++.+....+
T Consensus 518 ~s~ys~tl~l 527 (699)
T KOG4367|consen 518 VSPYSKTLVL 527 (699)
T ss_pred CCcccceeEe
Confidence 9998876633
No 166
>PHA02982 hypothetical protein; Provisional
Probab=94.40 E-value=0.069 Score=40.52 Aligned_cols=40 Identities=23% Similarity=0.548 Sum_probs=35.0
Q ss_pred CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46 (152)
Q Consensus 7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~ 46 (152)
+.|.+.-.++.++|+|.++..+..|-|+|+|....|..+.
T Consensus 89 d~y~~sv~g~~STLTIkk~~i~N~GCYtc~~ks~~~k~E~ 128 (251)
T PHA02982 89 DKYALSVSGNSSTFTMKKPDPQNLGCFTCEAKDAEGKEET 128 (251)
T ss_pred eeEEEEEeccceeEEeccCCcccCCceEEEEecCCCchhe
Confidence 5566777889999999999999999999999988877665
No 167
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=93.85 E-value=0.63 Score=30.93 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=13.3
Q ss_pred CCeEEEEEEEEcCCCCCC
Q psy15979 108 TNQYQNRRLVRKRFDRGN 125 (152)
Q Consensus 108 ~~~Y~~rV~A~N~~G~g~ 125 (152)
.+.|.| .|.|.||...
T Consensus 77 ~g~Y~C--~a~N~~G~d~ 92 (98)
T cd05898 77 QTHYNC--TAWNSFGSGT 92 (98)
T ss_pred CcEEEE--EEEeCCccce
Confidence 468998 8899999874
No 168
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=93.23 E-value=0.12 Score=33.79 Aligned_cols=22 Identities=18% Similarity=0.477 Sum_probs=19.4
Q ss_pred EeEEEEceeCCCCCEEEEEEEE
Q psy15979 17 RHTLMIRKVVASDFGNYSCEAT 38 (152)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~ 38 (152)
...+.|.+++.+|+|.|.|...
T Consensus 54 ~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 54 QASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred EEEEEecCCCcccCEEEEEEEE
Confidence 4468999999999999999875
No 169
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=93.13 E-value=0.19 Score=32.25 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=19.8
Q ss_pred eEEEEceeCCCCCEEEEEEEEcCCCc
Q psy15979 18 HTLMIRKVVASDFGNYSCEATNPMGK 43 (152)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~~G~ 43 (152)
+.|.|......|.|.|+|+|.|....
T Consensus 62 s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 62 SQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred EEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 35666666667999999999997543
No 170
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=92.59 E-value=0.89 Score=28.21 Aligned_cols=24 Identities=8% Similarity=0.026 Sum_probs=19.1
Q ss_pred CCeEEEEEEEEcCCCCCCCCCCcccc
Q psy15979 108 TNQYQNRRLVRKRFDRGNSTNGGLIV 133 (152)
Q Consensus 108 ~~~Y~~rV~A~N~~G~g~~s~~~~~~ 133 (152)
.+.|.| .|.|.+|....+++..++
T Consensus 54 ~G~Y~C--~a~N~~G~~~~~~~~~~~ 77 (78)
T cd05743 54 QGAYTC--EAINTRGMVFGIPDGILT 77 (78)
T ss_pred CEEEEE--EEEecCCEEEecccEEEE
Confidence 789998 789999988777766543
No 171
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=91.99 E-value=0.77 Score=29.20 Aligned_cols=19 Identities=11% Similarity=0.048 Sum_probs=14.5
Q ss_pred cCCCeEEEEEEEEcCCCCCCC
Q psy15979 106 TGTNQYQNRRLVRKRFDRGNS 126 (152)
Q Consensus 106 ~~~~~Y~~rV~A~N~~G~g~~ 126 (152)
.+.+.|+| .|+|.+|...+
T Consensus 57 ~d~g~Y~C--~A~N~~G~~~s 75 (81)
T cd05749 57 NETSKFSC--EAHNAKGVTTS 75 (81)
T ss_pred cCCeEEEE--EEEeccCcEEe
Confidence 34678999 89999996543
No 172
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=91.35 E-value=0.49 Score=32.09 Aligned_cols=39 Identities=28% Similarity=0.351 Sum_probs=31.1
Q ss_pred CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46 (152)
Q Consensus 6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~ 46 (152)
.+|+.+..+ +-.|.|+.++++|+|.|.-...|.-|....
T Consensus 61 n~r~~F~~e--nlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~ 99 (108)
T PF11465_consen 61 NNRFNFTSE--NLALLIKAAQPQDSGLYCLEVTNESGKVCT 99 (108)
T ss_dssp HHHEEEETT--TTEEEESS-SGGG-EEEEEEEEETTSCEEE
T ss_pred cceEeeecc--CceEEEeecCcccCceEEEEEEcCCCcEEE
Confidence 367777643 458999999999999999999999998865
No 173
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=91.16 E-value=2.4 Score=28.19 Aligned_cols=51 Identities=18% Similarity=0.248 Sum_probs=34.3
Q ss_pred CeEEEEEEec-CCCCcceEEEEEEECCCCCCCc---------ceEEecC-----CCeEEEEEEEEc
Q psy15979 69 NSYNITWMVS-SYTPLEEFKIKYRKIPGNEPSP---------MSNQLTG-----TNQYQNRRLVRK 119 (152)
Q Consensus 69 ~~~~L~W~~~-~~~pi~~y~~~~r~~~~~~~~~---------~~~~L~~-----~~~Y~~rV~A~N 119 (152)
-...|.|..+ +.++-..|+++|+......+.. ..-.|+. ...|.+||+|.-
T Consensus 35 f~~iL~W~~~~~~~~~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV~A~~ 100 (107)
T PF01108_consen 35 FKHILRWDPGPGSPPNVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARVRAEV 100 (107)
T ss_dssp TEEEEEEEESTTSSSTEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEEEEEE
T ss_pred CceEEEeCCCCCCCCCeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEEEEEEe
Confidence 4578999984 3456678999999544443221 2334544 678999999974
No 174
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=89.72 E-value=2.3 Score=27.07 Aligned_cols=19 Identities=5% Similarity=0.080 Sum_probs=15.0
Q ss_pred CCCeEEEEEEEEcCCCCCCCC
Q psy15979 107 GTNQYQNRRLVRKRFDRGNST 127 (152)
Q Consensus 107 ~~~~Y~~rV~A~N~~G~g~~s 127 (152)
+.+.|+| .|.|.+|....+
T Consensus 64 D~G~Y~C--~A~N~~G~~~~~ 82 (88)
T cd05851 64 DEGTYEC--EAENIKGKDKHQ 82 (88)
T ss_pred hCEEEEE--EEEcCCCceEEE
Confidence 3788998 789999986544
No 175
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=89.50 E-value=1.2 Score=28.03 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=18.7
Q ss_pred eEEEEceeCCCCCEEEEEEEEcCCCc
Q psy15979 18 HTLMIRKVVASDFGNYSCEATNPMGK 43 (152)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~~G~ 43 (152)
+.|.+.....+|.+.|+|+|.|....
T Consensus 45 s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 45 SSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEcchhhCCCEEEEEEeChhcC
Confidence 34666555556678999999997654
No 176
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=88.82 E-value=0.36 Score=33.89 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=24.8
Q ss_pred eEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG 52 (152)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~ 52 (152)
.+|.+...+.- .|+|+|.+.......+..++|..
T Consensus 86 aSL~~~~~~a~-~GnYTCeVt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 86 ASLKMDKSDAV-EGNYTCEVTELSREGETTIELKY 119 (130)
T ss_dssp --EEEEHHHHH--EEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEcchhcc-ccceEEEEEecCCCceEEEEEEE
Confidence 34777775544 79999999998888888877753
No 177
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=88.79 E-value=0.52 Score=30.36 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.2
Q ss_pred EeEEEEceeCCCCCEEEEEEEEcCC
Q psy15979 17 RHTLMIRKVVASDFGNYSCEATNPM 41 (152)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~ 41 (152)
.++|.|..-..+|...|+|+|.|+.
T Consensus 43 ~S~L~~~p~~eDdG~~~~C~a~~~~ 67 (82)
T cd05883 43 TSQLMLKVTKEDDGVPVICLVDHPA 67 (82)
T ss_pred EEEEEEECchhhCCCEEEEEEcCcc
Confidence 4678898888888899999999965
No 178
>KOG1480|consensus
Probab=88.19 E-value=0.18 Score=44.78 Aligned_cols=41 Identities=37% Similarity=0.629 Sum_probs=32.2
Q ss_pred ccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46 (152)
Q Consensus 3 l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~ 46 (152)
+.+|+...... .+.|.|..+...|.|+|+|+|.|.++....
T Consensus 171 ~~pd~n~~~~~---d~~li~~~arlsd~~nytc~a~ni~~~r~~ 211 (909)
T KOG1480|consen 171 IDPDANVIRAS---DHNLIISQARLSDSGNYTCEATNIVAKRKS 211 (909)
T ss_pred CCccccchhhh---cCCccccchhhhhcccceeeeehhhccccc
Confidence 34455555543 346999999999999999999999997766
No 179
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=88.04 E-value=5.1 Score=25.62 Aligned_cols=61 Identities=10% Similarity=0.077 Sum_probs=35.6
Q ss_pred CCCeEEEEEEecCCCCcceEEEEEEECCCC---C----CCcceEEecC-----CCeEEEEEEEEcC-CCCCCCCCCccc
Q psy15979 67 LPNSYNITWMVSSYTPLEEFKIKYRKIPGN---E----PSPMSNQLTG-----TNQYQNRRLVRKR-FDRGNSTNGGLI 132 (152)
Q Consensus 67 ~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~---~----~~~~~~~L~~-----~~~Y~~rV~A~N~-~G~g~~s~~~~~ 132 (152)
..+.++|+|..+ .+...|.+ |+.-... . .....+.|.+ ++.|.|+. +|. ++|+.+|+..-+
T Consensus 15 ~G~~VtL~C~~~--~~~~~f~l-~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~--~~~~~~~S~~Sd~lel 88 (91)
T cd05751 15 LGKPVTLRCQGP--YGAVEYRL-YREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYY--RSGVALWSEPSDPLEL 88 (91)
T ss_pred CCCcEEEEEecC--CCCCEEEE-EECCCCccccccCCCceeEEEEccCCChhHCEEEEEEE--ECCCCccCCCCCcEEE
Confidence 468999999865 33445554 3331110 0 0112344433 78999966 454 889999886533
No 180
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=87.20 E-value=2.4 Score=28.07 Aligned_cols=19 Identities=11% Similarity=0.065 Sum_probs=14.7
Q ss_pred cCCCeEEEEEEEEcCCCCCCC
Q psy15979 106 TGTNQYQNRRLVRKRFDRGNS 126 (152)
Q Consensus 106 ~~~~~Y~~rV~A~N~~G~g~~ 126 (152)
++.+.|.| .|.|..|..+.
T Consensus 75 ~D~G~Ytc--~A~N~~G~~~~ 93 (101)
T cd04975 75 SEAGTYTF--LASNSDASKSL 93 (101)
T ss_pred hhCeeEEE--EEECCCccEEE
Confidence 34899988 88999996543
No 181
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=87.16 E-value=2.7 Score=26.68 Aligned_cols=21 Identities=5% Similarity=0.219 Sum_probs=16.3
Q ss_pred cCCCeEEEEEEEEcCCCCCCCCC
Q psy15979 106 TGTNQYQNRRLVRKRFDRGNSTN 128 (152)
Q Consensus 106 ~~~~~Y~~rV~A~N~~G~g~~s~ 128 (152)
.+.+.|.| .|+|.+|....+.
T Consensus 54 ~D~G~YtC--~A~N~~G~~~~~~ 74 (79)
T cd05855 54 LNNGIYTL--VAKNEYGEDEKNV 74 (79)
T ss_pred ccCEEEEE--EEEcCCcccceEE
Confidence 34889988 8899999765553
No 182
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=87.02 E-value=12 Score=38.47 Aligned_cols=118 Identities=11% Similarity=0.076 Sum_probs=67.8
Q ss_pred eCCCCCEEEEE--EEEcCCCceEEEEEEec-CCCCce-eecCC-CCCCCCeEEEEEEecCCCCcceEEEEEEECCCCCC-
Q psy15979 25 VVASDFGNYSC--EATNPMGKHRAYLELSG-KPNPAI-FRSHP-QGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEP- 98 (152)
Q Consensus 25 v~~~D~G~YtC--~A~N~~G~~~~~~~v~~-~P~p~~-~~~~~-~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~~- 98 (152)
+...+.|.|+. .|.|.+|....+..+.. .|..-. ++..+ .......+++.-....++. ..|.|.+........
T Consensus 1664 vt~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~lt~GS~-vty~W~~gdG~s~~~s 1742 (2740)
T TIGR00864 1664 LNPLEAGPCDIFLQAANLLGQATADCTIDFLEPAGNLMLQASDNPAAVNALINLSAELAEGSG-LQYRWFLEEGDDLETS 1742 (2740)
T ss_pred EecCCCceEEEEEEEeecccceeeEEEEEEEEEcCceEEeccCCcccCCCeEEEEEEecCCCC-cEEEEEECCCCCcccC
Confidence 34578899955 89999999988643331 122211 11111 1112345555544444433 357776655322111
Q ss_pred -CcceEEecCCCeEEEEEEEEcCCCCCCCCCCcccccccccccccchh
Q psy15979 99 -SPMSNQLTGTNQYQNRRLVRKRFDRGNSTNGGLIVPKAKREGRQDRI 145 (152)
Q Consensus 99 -~~~~~~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~~~~~~~~~~~~~ 145 (152)
...++...-.+.|.+.|.|.|.+|... .+..|.+-.+.+|-+++-
T Consensus 1743 ~p~~tHtf~~~G~y~VtVta~N~vss~~--~s~~V~VqepV~GL~i~~ 1788 (2740)
T TIGR00864 1743 EPFMSHSFPSAGLHLVTMKAFNELGSAN--ASEEVDVQEPISGLKIRA 1788 (2740)
T ss_pred CCceEEEccCCceEEEEEEEEccccccc--eeEEEEEEeccccceEec
Confidence 113556666899999999999998654 356666666667776653
No 183
>KOG4258|consensus
Probab=86.08 E-value=3.3 Score=37.69 Aligned_cols=68 Identities=16% Similarity=0.194 Sum_probs=50.0
Q ss_pred CCCeEEEEEEec--CCCCcceEEEEEEECCCCCCC----------cceEEecC--CCeEEEEEEEEcCCCCCCCCCCccc
Q psy15979 67 LPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPS----------PMSNQLTG--TNQYQNRRLVRKRFDRGNSTNGGLI 132 (152)
Q Consensus 67 ~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~~~~----------~~~~~L~~--~~~Y~~rV~A~N~~G~g~~s~~~~~ 132 (152)
..+++.|+|..+ .+.-|..|.++|+........ .....|.. .+.|.+||+|..-.|.|..+.+..+
T Consensus 841 ~~~~v~l~w~EP~~pNGli~~Y~Vk~r~~~~et~v~cvsR~~~~k~~gv~l~~l~~G~y~~~vratSlaGng~~t~~~~~ 920 (1025)
T KOG4258|consen 841 EMNSVILRWLEPKEPNGLILNYEVKYRRNGDETHVECVSRMDYAKAGGVYLKRLNPGNYSVRVRATSLAGNGSWTESVIF 920 (1025)
T ss_pred CcceEEEecCCCCCCCccEEEEEEEEeeccCcchhhhhhhhhhhhcCceEEEecCCCcEEEEEEEEeeccCCCCcCCcce
Confidence 568999999864 345788999999987654311 12223333 7999999999999999999987754
Q ss_pred cc
Q psy15979 133 VP 134 (152)
Q Consensus 133 ~~ 134 (152)
..
T Consensus 921 ~v 922 (1025)
T KOG4258|consen 921 YV 922 (1025)
T ss_pred EE
Confidence 33
No 184
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=85.72 E-value=2.6 Score=26.64 Aligned_cols=21 Identities=5% Similarity=0.259 Sum_probs=16.2
Q ss_pred cCCCeEEEEEEEEcCCCCCCCCC
Q psy15979 106 TGTNQYQNRRLVRKRFDRGNSTN 128 (152)
Q Consensus 106 ~~~~~Y~~rV~A~N~~G~g~~s~ 128 (152)
.+.+.|.| .|.|.+|.-..+.
T Consensus 56 ~D~G~YtC--~A~N~~G~~~~~~ 76 (81)
T cd04971 56 VNNGNYTL--VASNEYGQDSKSI 76 (81)
T ss_pred ccCeEEEE--EEEeCCCCeeeEE
Confidence 34889988 8899999865543
No 185
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=85.60 E-value=3.3 Score=25.65 Aligned_cols=20 Identities=10% Similarity=0.227 Sum_probs=15.3
Q ss_pred cCCCeEEEEEEEEcCCCCCCCC
Q psy15979 106 TGTNQYQNRRLVRKRFDRGNST 127 (152)
Q Consensus 106 ~~~~~Y~~rV~A~N~~G~g~~s 127 (152)
++.+.|.| .|.|.+|.....
T Consensus 61 ~D~G~Y~C--~a~N~~G~~~s~ 80 (86)
T cd05724 61 SDEGTYKC--VATNMVGERESA 80 (86)
T ss_pred ccCEEEEE--EEEeccCceeee
Confidence 33789998 789999976544
No 186
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=85.55 E-value=3.6 Score=26.53 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=14.9
Q ss_pred cCCCeEEEEEEEEcCCCCCCC
Q psy15979 106 TGTNQYQNRRLVRKRFDRGNS 126 (152)
Q Consensus 106 ~~~~~Y~~rV~A~N~~G~g~~ 126 (152)
.+.+.|+| .|.|.+|...+
T Consensus 69 ~D~G~Y~C--~A~N~~G~~~s 87 (94)
T cd05850 69 RDAGSYQC--LAINRCGTVVS 87 (94)
T ss_pred CcCEEEEE--EEEcCcCcEEE
Confidence 34888998 88999997644
No 187
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=85.46 E-value=5.2 Score=25.21 Aligned_cols=23 Identities=13% Similarity=0.227 Sum_probs=17.2
Q ss_pred cCCCeEEEEEEEEcCCCCCCCCCCc
Q psy15979 106 TGTNQYQNRRLVRKRFDRGNSTNGG 130 (152)
Q Consensus 106 ~~~~~Y~~rV~A~N~~G~g~~s~~~ 130 (152)
.+.+.|.| .|.|.+|...+....
T Consensus 74 ~D~G~Y~C--~a~N~~G~~~s~~~~ 96 (100)
T cd07693 74 SDEGVYVC--VAHNSLGEAVSRNAS 96 (100)
T ss_pred CcCEEEEE--EEEccccceecceEE
Confidence 45889998 789999986555443
No 188
>KOG3515|consensus
Probab=85.44 E-value=2.3 Score=38.12 Aligned_cols=74 Identities=26% Similarity=0.214 Sum_probs=44.1
Q ss_pred EEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceee-cCC-CCCCCCeEEEEEEecCCCCcceEEEEEEE
Q psy15979 19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR-SHP-QGRLPNSYNITWMVSSYTPLEEFKIKYRK 92 (152)
Q Consensus 19 ~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~-~~~-~~~~~~~~~L~W~~~~~~pi~~y~~~~r~ 92 (152)
.+.+.+|.+.|.|.|.|.|.|..|.+...+.+...-.|.... ..+ .....+++.+.+..+...--..+.-|+|.
T Consensus 459 ~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~ 534 (741)
T KOG3515|consen 459 LGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMHHEPRS 534 (741)
T ss_pred ccccceeeeccCCcceeeeccCCCceeeEEeeccccCCcccccccccccCCCCcccceeeccccccchhhhccccc
Confidence 445778999999999999999999999987754332232211 111 23345675555554433222233444443
No 189
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=85.40 E-value=6.7 Score=24.92 Aligned_cols=21 Identities=0% Similarity=0.047 Sum_probs=16.6
Q ss_pred ecCCCeEEEEEEEEcCCCCCCCC
Q psy15979 105 LTGTNQYQNRRLVRKRFDRGNST 127 (152)
Q Consensus 105 L~~~~~Y~~rV~A~N~~G~g~~s 127 (152)
.++.+.|.| .|.|.+|....+
T Consensus 56 ~~D~G~YtC--~A~N~~G~~~~~ 76 (88)
T cd05735 56 REDSGFFSC--HAINSYGEDRGI 76 (88)
T ss_pred cccCEEEEE--EEEcCCCcceEE
Confidence 345889999 889999987544
No 190
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=85.35 E-value=2.3 Score=25.84 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=15.5
Q ss_pred cCCCeEEEEEEEEcCCCCCCCC
Q psy15979 106 TGTNQYQNRRLVRKRFDRGNST 127 (152)
Q Consensus 106 ~~~~~Y~~rV~A~N~~G~g~~s 127 (152)
.+.+.|+| .|.|.+|....+
T Consensus 49 ~D~G~Y~C--~a~N~~G~~~~~ 68 (73)
T cd04969 49 SDEGKYTC--FAENFFGKANST 68 (73)
T ss_pred hHCEEEEE--EEECCCCceEEE
Confidence 34789988 889999987544
No 191
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=85.23 E-value=4.8 Score=25.63 Aligned_cols=21 Identities=10% Similarity=0.281 Sum_probs=16.9
Q ss_pred ecCCCeEEEEEEEEcCCCCCCCC
Q psy15979 105 LTGTNQYQNRRLVRKRFDRGNST 127 (152)
Q Consensus 105 L~~~~~Y~~rV~A~N~~G~g~~s 127 (152)
.++.+.|.| .|.|.+|....+
T Consensus 64 ~~D~G~Y~C--~A~N~~G~~~~s 84 (90)
T cd04974 64 FDDAGEYTC--LAGNSIGPSHHS 84 (90)
T ss_pred cccCcEEEE--EeecccCcccCC
Confidence 455999999 889999986544
No 192
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=85.07 E-value=5 Score=24.36 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=14.3
Q ss_pred CCCeEEEEEEEEcCCCCCCC
Q psy15979 107 GTNQYQNRRLVRKRFDRGNS 126 (152)
Q Consensus 107 ~~~~Y~~rV~A~N~~G~g~~ 126 (152)
+.+.|+| .|.|.+|.-..
T Consensus 51 D~G~Y~C--~A~N~~G~~~~ 68 (74)
T cd05745 51 DQGQYEC--QAVNIVGSQRT 68 (74)
T ss_pred hCEEEEE--EEEeCCCceeE
Confidence 3789988 88999997643
No 193
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=84.29 E-value=1.3 Score=27.64 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.2
Q ss_pred EeEEEEceeCCCCCEEEEEEEEc
Q psy15979 17 RHTLMIRKVVASDFGNYSCEATN 39 (152)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N 39 (152)
+.+|.+-.+..+-.|.|.|.++|
T Consensus 32 ~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 32 NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred ccEEeccCcccCCCcceEecCcc
Confidence 46788888889999999999988
No 194
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=83.91 E-value=1.6 Score=29.17 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=19.5
Q ss_pred CEeEEEEceeCCCCCEEEEEEEEcCCCc
Q psy15979 16 SRHTLMIRKVVASDFGNYSCEATNPMGK 43 (152)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~ 43 (152)
...+|+|.--..+|.-+|+|+|++.++.
T Consensus 60 ~~stlt~~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 60 APATITITVDREDHGANFSCETELDLRP 87 (100)
T ss_pred eEEEEEEecchhhCCcEEEEEEEeccCc
Confidence 3556777655445555999999997754
No 195
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=83.76 E-value=4.9 Score=25.84 Aligned_cols=17 Identities=18% Similarity=0.180 Sum_probs=14.0
Q ss_pred CCCeEEEEEEEEcCCCCCC
Q psy15979 107 GTNQYQNRRLVRKRFDRGN 125 (152)
Q Consensus 107 ~~~~Y~~rV~A~N~~G~g~ 125 (152)
+.+.|+| .|.|.+|...
T Consensus 66 D~G~Y~C--~a~N~~G~~~ 82 (91)
T cd05740 66 DTGHYQC--EASNEVSNMT 82 (91)
T ss_pred hCEEEEE--EEEcCCCCEE
Confidence 3899998 8899999753
No 196
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=83.04 E-value=8 Score=23.31 Aligned_cols=17 Identities=6% Similarity=0.198 Sum_probs=13.3
Q ss_pred cCCCeEEEEEEEEcCCCCC
Q psy15979 106 TGTNQYQNRRLVRKRFDRG 124 (152)
Q Consensus 106 ~~~~~Y~~rV~A~N~~G~g 124 (152)
.+.+.|.| .|.|.+|.-
T Consensus 50 ~D~G~Y~C--~a~N~~G~~ 66 (74)
T cd05748 50 SDSGKYTL--TLKNPAGEK 66 (74)
T ss_pred CcCEEEEE--EEECCCccE
Confidence 34788988 889999864
No 197
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=82.65 E-value=8.9 Score=24.44 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=21.5
Q ss_pred EEEEceeCCCCCEEEEEEE-EcCCCceEEEEE
Q psy15979 19 TLMIRKVVASDFGNYSCEA-TNPMGKHRAYLE 49 (152)
Q Consensus 19 ~L~I~~v~~~D~G~YtC~A-~N~~G~~~~~~~ 49 (152)
.+.......+|+|.++|.| .|..=..+..+.
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~ 75 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASDNEPKERESKIE 75 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEECTTEEEEEEEE
T ss_pred EEEEecCCCCCCEEEEEEEcCCceEEEEEEEE
Confidence 4566677789999999999 555544444433
No 198
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=82.55 E-value=25 Score=36.24 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=63.4
Q ss_pred CCCEEEEE--EEEcCCCceEEEEEEecCCCCceeec-CCCCCCCCeEEEEEEe--cCCCCcceEEEEEEECCCCCC--Cc
Q psy15979 28 SDFGNYSC--EATNPMGKHRAYLELSGKPNPAIFRS-HPQGRLPNSYNITWMV--SSYTPLEEFKIKYRKIPGNEP--SP 100 (152)
Q Consensus 28 ~D~G~YtC--~A~N~~G~~~~~~~v~~~P~p~~~~~-~~~~~~~~~~~L~W~~--~~~~pi~~y~~~~r~~~~~~~--~~ 100 (152)
...|.|+. .|.|..|....++.+.+......+.. ...........+.+.. ..+. ...|.|.+..-..... ..
T Consensus 1481 ~~~GtYtVtLTvtN~~Gsst~T~~VtV~~pV~~~tinas~~~vpl~~sV~Fta~~s~Gs-~v~ysWdFGDg~ts~~~npt 1559 (2740)
T TIGR00864 1481 NSPGDFNIRLAAANEVGKNEATLNVAVKARVRGLTINASLTNVPLNGSVHFEAHLDAGD-DVRFSWILCDHCTPIFGGNT 1559 (2740)
T ss_pred CCCceEEEEEEEECCCCceEEEEEEEEeccccceEEcCCCccccccceEEEEEEccCCC-ceeEEEEeCCCCccccCCCc
Confidence 45799976 68999999888766654322111211 1111111221344443 2333 4568887754322111 12
Q ss_pred ceEEecCCCeEEEEEEEEcCCCCCCCCCCcccccccccccccch
Q psy15979 101 MSNQLTGTNQYQNRRLVRKRFDRGNSTNGGLIVPKAKREGRQDR 144 (152)
Q Consensus 101 ~~~~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~~~~~~~~~~~~ 144 (152)
..|.....+.|.++|.|.|..|...-+ ..+.+....+|-|+.
T Consensus 1560 ~~yTY~spGtYtVtLTvtN~~Gs~~~T--~~i~V~~~I~GlqI~ 1601 (2740)
T TIGR00864 1560 IFYTFRSVGTFNIIVTAENDVGAAQAS--IFLFVLQEIEGLQIL 1601 (2740)
T ss_pred eEEeecCCceEEEEEEEecCCCcccee--EEEEEeecccceEEE
Confidence 457777789999999999999987444 333333334454443
No 199
>KOG4802|consensus
Probab=82.49 E-value=3.3 Score=34.69 Aligned_cols=25 Identities=8% Similarity=0.143 Sum_probs=19.9
Q ss_pred EecCCCeEEEEEEEEcCCC---CCCCCC
Q psy15979 104 QLTGTNQYQNRRLVRKRFD---RGNSTN 128 (152)
Q Consensus 104 ~L~~~~~Y~~rV~A~N~~G---~g~~s~ 128 (152)
.+.++--|+|||.|.|.+| .++||.
T Consensus 215 ~~rPgRwyefrvaavn~~G~rGFs~PSk 242 (516)
T KOG4802|consen 215 DMRPGRWYEFRVAAVNAYGFRGFSEPSK 242 (516)
T ss_pred ecCcceeEEEEEeeeecccccccCCCCC
Confidence 5677899999999999997 444544
No 200
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=82.35 E-value=4.6 Score=24.25 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=15.9
Q ss_pred ecCCCeEEEEEEEEcCCCCCCCC
Q psy15979 105 LTGTNQYQNRRLVRKRFDRGNST 127 (152)
Q Consensus 105 L~~~~~Y~~rV~A~N~~G~g~~s 127 (152)
.++.+.|.| .|.|.+|....+
T Consensus 52 ~~D~G~Y~C--~a~N~~G~~~~~ 72 (75)
T cd05750 52 LADSGEYTC--VVENILGNDTVT 72 (75)
T ss_pred cccCeEEEE--EEEEcCCceeEE
Confidence 445889998 789999976443
No 201
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=82.33 E-value=1.5 Score=27.08 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=17.2
Q ss_pred EeEEEEceeCCCCCEEEEEEEEcC
Q psy15979 17 RHTLMIRKVVASDFGNYSCEATNP 40 (152)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~ 40 (152)
...+...+-. ++.|.|.|.+.+.
T Consensus 34 ~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 34 DEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred CceEEeeccC-CCCceEEEEeCCC
Confidence 3456666666 8999999999754
No 202
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=82.26 E-value=2.1 Score=27.14 Aligned_cols=25 Identities=8% Similarity=0.105 Sum_probs=19.1
Q ss_pred eEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979 18 HTLMIRKVVASDFGNYSCEATNPMG 42 (152)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~~G 42 (152)
+.|.|.....+|...|+|+|.+...
T Consensus 46 s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 46 SSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecchhCCCEEEEEEECccc
Confidence 4566656667788999999999753
No 203
>KOG0196|consensus
Probab=82.23 E-value=8.4 Score=35.11 Aligned_cols=62 Identities=13% Similarity=0.103 Sum_probs=38.7
Q ss_pred CCCCeEEEEEEecC---CCCcceEEEEEEECCCCC-------------CCc-----ceE---EecCCCeEEEEEEEEcCC
Q psy15979 66 RLPNSYNITWMVSS---YTPLEEFKIKYRKIPGNE-------------PSP-----MSN---QLTGTNQYQNRRLVRKRF 121 (152)
Q Consensus 66 ~~~~~~~L~W~~~~---~~pi~~y~~~~r~~~~~~-------------~~~-----~~~---~L~~~~~Y~~rV~A~N~~ 121 (152)
...+++.|.|..+. +.+-..|.+-+++-.... |.. ... .|.+.+.|.|-|.|.|.+
T Consensus 342 vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~ah~~YTFeV~AvNgV 421 (996)
T KOG0196|consen 342 VNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLAHTNYTFEVEAVNGV 421 (996)
T ss_pred cccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEeccccccccEEEEEEeecc
Confidence 35689999999852 233345777666543211 111 122 455599999999999977
Q ss_pred CCCCCC
Q psy15979 122 DRGNST 127 (152)
Q Consensus 122 G~g~~s 127 (152)
-.=.|.
T Consensus 422 S~lsp~ 427 (996)
T KOG0196|consen 422 SDLSPF 427 (996)
T ss_pred cccCCC
Confidence 644433
No 204
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=82.18 E-value=3.2 Score=25.42 Aligned_cols=19 Identities=26% Similarity=0.221 Sum_probs=14.6
Q ss_pred cCCCeEEEEEEEEcCCCCCCC
Q psy15979 106 TGTNQYQNRRLVRKRFDRGNS 126 (152)
Q Consensus 106 ~~~~~Y~~rV~A~N~~G~g~~ 126 (152)
.+.+.|+| .|.|.+|.-..
T Consensus 51 ~D~G~Y~C--~a~N~~G~~~~ 69 (76)
T cd05867 51 SDTAVYQC--EARNRHGNLLA 69 (76)
T ss_pred hhCEEEEE--EEECCCCeEEE
Confidence 34789999 88999997533
No 205
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=82.15 E-value=7.5 Score=24.37 Aligned_cols=20 Identities=5% Similarity=0.102 Sum_probs=15.4
Q ss_pred ecCCCeEEEEEEEEcCCCCCCC
Q psy15979 105 LTGTNQYQNRRLVRKRFDRGNS 126 (152)
Q Consensus 105 L~~~~~Y~~rV~A~N~~G~g~~ 126 (152)
.++.+.|.| .|.|.+|....
T Consensus 62 ~~D~G~Y~C--~a~N~~G~~~~ 81 (88)
T cd04968 62 FEDEGTYEC--EAENIKGKDTH 81 (88)
T ss_pred cccCEEEEE--EEEECCCcEEE
Confidence 344889998 78999998643
No 206
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=82.02 E-value=4.4 Score=24.91 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=16.5
Q ss_pred ecCCCeEEEEEEEEcCCCCCCCC
Q psy15979 105 LTGTNQYQNRRLVRKRFDRGNST 127 (152)
Q Consensus 105 L~~~~~Y~~rV~A~N~~G~g~~s 127 (152)
.++.+.|.| .|.|.+|....+
T Consensus 48 ~~D~G~Y~C--~A~N~~G~~~~~ 68 (73)
T cd05852 48 KLDEGSYTC--FAENNRGKANST 68 (73)
T ss_pred hhHCEEEEE--EEECCCCceeEE
Confidence 344889999 889999987654
No 207
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=80.45 E-value=5.1 Score=26.13 Aligned_cols=26 Identities=8% Similarity=0.028 Sum_probs=18.6
Q ss_pred ecCCCeEEEEEEEEcCCCCCCCCCCccc
Q psy15979 105 LTGTNQYQNRRLVRKRFDRGNSTNGGLI 132 (152)
Q Consensus 105 L~~~~~Y~~rV~A~N~~G~g~~s~~~~~ 132 (152)
..+.+.|.| .|.|.+|.-..+....+
T Consensus 65 ~~D~G~Ytc--~a~N~~G~~~~~~~l~V 90 (98)
T cd05762 65 QEHCGCYTL--EVENKLGSRQAQVNLTV 90 (98)
T ss_pred hhhCEEEEE--EEEcCCCceeEEEEEEE
Confidence 334889988 77999999766544433
No 208
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=80.04 E-value=9.9 Score=24.45 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=15.5
Q ss_pred ecCCCeEEEEEEEEcCCCCCCC
Q psy15979 105 LTGTNQYQNRRLVRKRFDRGNS 126 (152)
Q Consensus 105 L~~~~~Y~~rV~A~N~~G~g~~ 126 (152)
.++.+.|.| .|.|.+|....
T Consensus 73 ~~D~G~Y~C--~A~N~~G~~~~ 92 (98)
T cd05870 73 LSDSGRYDC--EAASRIGGHQK 92 (98)
T ss_pred cCCCEEEEE--EEeccCCccee
Confidence 444889999 88999997643
No 209
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=80.01 E-value=4.6 Score=25.66 Aligned_cols=24 Identities=21% Similarity=0.123 Sum_probs=18.4
Q ss_pred eEEEEceeCCCCCEEEEEEEEcCC
Q psy15979 18 HTLMIRKVVASDFGNYSCEATNPM 41 (152)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~~ 41 (152)
+.|.|..-..+|...|+|++.|..
T Consensus 46 s~L~~~~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 46 STLDFRVDRSDDGVAIICRVDHES 69 (83)
T ss_pred EEEEEEcccccCCCEEEEEEechh
Confidence 467776665677889999999864
No 210
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=79.16 E-value=11 Score=24.22 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=14.8
Q ss_pred cCCCeEEEEEEEEcCCCCCCC
Q psy15979 106 TGTNQYQNRRLVRKRFDRGNS 126 (152)
Q Consensus 106 ~~~~~Y~~rV~A~N~~G~g~~ 126 (152)
.+.+.|+| .|.|.+|...+
T Consensus 69 ~D~G~Y~C--~A~N~~G~~~S 87 (94)
T cd05848 69 KDSGRYQC--LATNSIGSILS 87 (94)
T ss_pred CcCEEEEE--EEEcCCCeEEe
Confidence 34788999 78999996644
No 211
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=77.63 E-value=14 Score=22.87 Aligned_cols=57 Identities=14% Similarity=0.014 Sum_probs=31.0
Q ss_pred CCeEEEEEEecCCCCcceEEEEEEECCCCC----CCcceEE-----ecCCCeEEEEEEEEcCCCCCCCC
Q psy15979 68 PNSYNITWMVSSYTPLEEFKIKYRKIPGNE----PSPMSNQ-----LTGTNQYQNRRLVRKRFDRGNST 127 (152)
Q Consensus 68 ~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~----~~~~~~~-----L~~~~~Y~~rV~A~N~~G~g~~s 127 (152)
+..++|.|...+..|...+.| ++....-. .....+. .++.+.|.| .|.|.+|....+
T Consensus 16 G~~v~L~C~~~~~~~~~~i~W-~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C--~a~n~~g~~~~~ 81 (85)
T cd05754 16 GADVSFICRAKSKSPAYTLVW-TRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVC--TGSNMLDTDEAT 81 (85)
T ss_pred CCCEEEEEEcCCCCCCcEEEE-EECCCcCCCcccccCCEEEECCCCHHHCEEEEE--EEeccCCeEeEE
Confidence 577888888754334333333 23221100 1112333 334888988 689999876543
No 212
>KOG4597|consensus
Probab=76.49 E-value=2.2 Score=36.22 Aligned_cols=35 Identities=29% Similarity=0.309 Sum_probs=30.2
Q ss_pred EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
...|.|-|....|+|-|+|.|.|..|...+.+.+.
T Consensus 256 tcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c~ 290 (560)
T KOG4597|consen 256 TCQLVICNEWQADAGWYTCSARCGAGFLRRDVPCS 290 (560)
T ss_pred eeeEEEcchhhcCCCceeeccccccceeeccceee
Confidence 45799999999999999999999999888865443
No 213
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=76.14 E-value=8.4 Score=24.30 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=17.6
Q ss_pred EecCCCeEEEEEEEEcCCCCCCCCCC
Q psy15979 104 QLTGTNQYQNRRLVRKRFDRGNSTNG 129 (152)
Q Consensus 104 ~L~~~~~Y~~rV~A~N~~G~g~~s~~ 129 (152)
...+.+.|.| .|.|.+|....++.
T Consensus 55 ~~~D~G~YtC--~A~n~~g~~~~~~~ 78 (85)
T cd05854 55 QLSHAGTYTC--TAQTVVDSASASAT 78 (85)
T ss_pred ChhhCeEEEE--EEecCCCCEEEEEE
Confidence 3445899999 88999986655443
No 214
>KOG3515|consensus
Probab=75.22 E-value=4 Score=36.58 Aligned_cols=72 Identities=15% Similarity=0.078 Sum_probs=42.1
Q ss_pred EeEEEEceeCCCCCEEEEEEEEcC---CCceEEEEEEecCCCCceeecCC--C--C-CCCCeEEEEEEecCCCCcceEEE
Q psy15979 17 RHTLMIRKVVASDFGNYSCEATNP---MGKHRAYLELSGKPNPAIFRSHP--Q--G-RLPNSYNITWMVSSYTPLEEFKI 88 (152)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~---~G~~~~~~~v~~~P~p~~~~~~~--~--~-~~~~~~~L~W~~~~~~pi~~y~~ 88 (152)
.+.|.+.....+|.|+|+|.|.|. .+..-....+.+.+....++... . . ...+.+.|.|...+..|-..++|
T Consensus 162 ~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w 241 (741)
T KOG3515|consen 162 PSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTW 241 (741)
T ss_pred ccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhh
Confidence 456888889999999999999994 44444444444333222222111 0 1 12577888886555545444443
No 215
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=75.05 E-value=17 Score=22.36 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=33.2
Q ss_pred CeEEEEEEecCCCCcceEEEEEEEC-CCCCC-CcceEEecCCCeEEEEEEEEcCCCCCC
Q psy15979 69 NSYNITWMVSSYTPLEEFKIKYRKI-PGNEP-SPMSNQLTGTNQYQNRRLVRKRFDRGN 125 (152)
Q Consensus 69 ~~~~L~W~~~~~~pi~~y~~~~r~~-~~~~~-~~~~~~L~~~~~Y~~rV~A~N~~G~g~ 125 (152)
..+.+.+...+...+..|.|.+-.. ..... ....+.....+.|.++|.+.|..|...
T Consensus 15 ~~v~~~~~~~~~~~~~~~~W~fgdg~~~~~~~~~~~~~y~~~G~y~v~l~v~d~~g~~~ 73 (81)
T cd00146 15 ASVTFSASDSSGGSIVSYKWDFGDGEVSSSGEPTVTHTYTKPGTYTVTLTVTNAVGSSS 73 (81)
T ss_pred ccEEEEEEeCCCCCEEEEEEEeCCCCccccCCCceEEEcCCCcEEEEEEEEEeCCCCEE
Confidence 4555555544333455666655332 00001 224556666899999999999887654
No 216
>KOG4228|consensus
Probab=74.65 E-value=6.6 Score=36.62 Aligned_cols=104 Identities=17% Similarity=0.252 Sum_probs=58.6
Q ss_pred EEEEEEEcCCCceEEEEEEecC--C-CCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEECCCCC---CCcc----
Q psy15979 32 NYSCEATNPMGKHRAYLELSGK--P-NPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNE---PSPM---- 101 (152)
Q Consensus 32 ~YtC~A~N~~G~~~~~~~v~~~--P-~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~---~~~~---- 101 (152)
+|+|.+...+|.....+.+... | .|+.+.. ......+..+.|...+. +...|.+.++.....- ..+.
T Consensus 1 ~Y~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~v--t~~~~~~~~~~~~~~~t-~~~~y~v~~~~~~s~~~~~~~~~~~~~ 77 (1087)
T KOG4228|consen 1 NYTCLARSGLGPGELITYVRVNGGPPGPSTPNV--TGSTATSWVQAELLGST-WPNYYQVIFKALSSGYGYIDVDLTTRL 77 (1087)
T ss_pred CeeeeecccCCCccceEEEEecCCCCCCCCccc--ccccccceeehhhccCC-ChhhhheeeeEeccCcceeeccceeec
Confidence 5999999999988886555533 3 3322221 12235677777776554 5566777776654431 0011
Q ss_pred eE-EecCCCeEEEEEEEEcCCCCCCCCCCcccccccccccccchh
Q psy15979 102 SN-QLTGTNQYQNRRLVRKRFDRGNSTNGGLIVPKAKREGRQDRI 145 (152)
Q Consensus 102 ~~-~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~~~~~~~~~~~~~ 145 (152)
++ -+.....|++ .+.|..|.+.+. .|.+-|.|.++|+
T Consensus 78 s~~~~~~~~~~~~--~evnt~~~a~~~-----~~~~~rt~~~~~~ 115 (1087)
T KOG4228|consen 78 SYPCLSPPSFLEL--VEVNTIGRAPFQ-----CPVAPRTGEQATL 115 (1087)
T ss_pred ccCCCCCcchhhh--hhcccccccccc-----cccCCcccccccc
Confidence 11 1222455655 788888888655 3344455555443
No 217
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=74.65 E-value=8.7 Score=22.72 Aligned_cols=20 Identities=10% Similarity=0.092 Sum_probs=16.1
Q ss_pred CCeEEEEEEEEcCCCCCCCC
Q psy15979 108 TNQYQNRRLVRKRFDRGNST 127 (152)
Q Consensus 108 ~~~Y~~rV~A~N~~G~g~~s 127 (152)
.+.|.|.|.|.|..|.-...
T Consensus 38 ~G~Y~l~V~a~~~~~~~~~~ 57 (66)
T PF07495_consen 38 PGKYTLEVRAKDNNGKWSSD 57 (66)
T ss_dssp SEEEEEEEEEEETTS-B-SS
T ss_pred CEEEEEEEEEECCCCCcCcc
Confidence 89999999999999876554
No 218
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=74.60 E-value=5.3 Score=27.44 Aligned_cols=32 Identities=9% Similarity=0.191 Sum_probs=24.8
Q ss_pred CcEEEE--EcCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979 7 ERRIME--TRGSRHTLMIRKVVASDFGNYSCEAT 38 (152)
Q Consensus 7 ~r~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~ 38 (152)
.|+.+. ...+.-.|.|.+++.+|.+.|-|.-+
T Consensus 61 ~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca~e 94 (115)
T cd05721 61 DGFNCDGTLGNEQVNFTLQNLRANQTDIYFCKIE 94 (115)
T ss_pred CCeEEeEeCCCCEEEEEEcCCCHHHCeEEEEEee
Confidence 455553 34566679999999999999999765
No 219
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=74.23 E-value=10 Score=23.20 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=16.6
Q ss_pred eEEEEceeCCCCCEEEEEEEEcC
Q psy15979 18 HTLMIRKVVASDFGNYSCEATNP 40 (152)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~ 40 (152)
+.|.|.....++...|+|++...
T Consensus 48 s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 48 SYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred EEEEEccccCCCCCEEEEEEEEc
Confidence 35666555667778999998764
No 220
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=74.11 E-value=11 Score=22.66 Aligned_cols=23 Identities=9% Similarity=0.170 Sum_probs=19.6
Q ss_pred ceEEecCCCeEEEEEEEEcCCCC
Q psy15979 101 MSNQLTGTNQYQNRRLVRKRFDR 123 (152)
Q Consensus 101 ~~~~L~~~~~Y~~rV~A~N~~G~ 123 (152)
.++.....+.|.++|.+.|..|.
T Consensus 44 ~t~ty~~~G~y~V~ltv~n~~g~ 66 (69)
T PF00801_consen 44 VTHTYSSPGTYTVTLTVTNGVGS 66 (69)
T ss_dssp EEEEESSSEEEEEEEEEEETTSE
T ss_pred EEEEcCCCeEEEEEEEEEECCCC
Confidence 45667779999999999999885
No 221
>PHA03042 CD47-like protein; Provisional
Probab=73.68 E-value=11 Score=29.88 Aligned_cols=35 Identities=31% Similarity=0.469 Sum_probs=24.5
Q ss_pred CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
+..+|.+..- ..=.|+|||.|.+..-..+..++|.
T Consensus 69 n~aSL~~~f~-~~l~GNYTCEv~~l~n~gk~~IeLk 103 (286)
T PHA03042 69 NTSSLKFNFS-KNLSGNYTCEAINKFNKIKNTIELQ 103 (286)
T ss_pred cceEEEEecc-ccCCCceeEEEeecccCccEEEEEE
Confidence 4456776443 4557999999998776666666664
No 222
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=73.62 E-value=18 Score=22.08 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=18.4
Q ss_pred ceEEecCCCeEEEEEEEEcCCC
Q psy15979 101 MSNQLTGTNQYQNRRLVRKRFD 122 (152)
Q Consensus 101 ~~~~L~~~~~Y~~rV~A~N~~G 122 (152)
..+.....+.|.++|.+.|..|
T Consensus 47 ~~~~y~~~G~y~v~l~v~n~~g 68 (79)
T smart00089 47 VTHTYTKPGTYTVTLTVTNAVG 68 (79)
T ss_pred EEEEeCCCcEEEEEEEEEcCCC
Confidence 4556666899999999999998
No 223
>PHA03282 envelope glycoprotein E; Provisional
Probab=72.00 E-value=10 Score=32.29 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEE
Q psy15979 5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEA 37 (152)
Q Consensus 5 ~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A 37 (152)
.++|+.+. +.+|.|.+++++|+|.|+-.+
T Consensus 115 ~~~rvs~~----n~tl~l~~a~~~DsG~Y~L~~ 143 (540)
T PHA03282 115 WPPRVAVV----NGTLVLREARETDSGMYVLSV 143 (540)
T ss_pred cCcceeEe----cceEEEeeccccCCceEEEEe
Confidence 35777776 346999999999999999975
No 224
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=71.36 E-value=24 Score=22.65 Aligned_cols=63 Identities=11% Similarity=0.115 Sum_probs=37.7
Q ss_pred CCCeEEEEEEecCCCCcceEEEEEEECCCCCC--------C--cceEEec-----CCCeEEEEEEEEc-CCCCCCCCCCc
Q psy15979 67 LPNSYNITWMVSSYTPLEEFKIKYRKIPGNEP--------S--PMSNQLT-----GTNQYQNRRLVRK-RFDRGNSTNGG 130 (152)
Q Consensus 67 ~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~~--------~--~~~~~L~-----~~~~Y~~rV~A~N-~~G~g~~s~~~ 130 (152)
....++|.|.... ....| .+|++.....+ . ...+.|. +++.|.|+....+ .++|+++|+..
T Consensus 14 ~G~~VTL~C~~~~--~~~~f-~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~~~~~~~wS~~Sdpl 90 (94)
T cd05711 14 SGENVTLQCHSDI--RFDRF-ILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSYNHSLYEWSAPSDPL 90 (94)
T ss_pred CCCeEEEEEecCC--CCCEE-EEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEECCCCCccccCCCCCe
Confidence 4689999997543 22334 44555433221 0 1233343 3899999876444 58999999876
Q ss_pred cc
Q psy15979 131 LI 132 (152)
Q Consensus 131 ~~ 132 (152)
-+
T Consensus 91 ~l 92 (94)
T cd05711 91 KI 92 (94)
T ss_pred EE
Confidence 44
No 225
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=70.28 E-value=11 Score=24.73 Aligned_cols=26 Identities=4% Similarity=0.065 Sum_probs=20.2
Q ss_pred eEEEEceeCCCCCEEEEEEEEcCCCc
Q psy15979 18 HTLMIRKVVASDFGNYSCEATNPMGK 43 (152)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~~G~ 43 (152)
+.|.+..-..+|.-.|+|+|+|..-.
T Consensus 59 S~l~~~P~~~d~Gk~ltC~v~h~al~ 84 (95)
T cd07703 59 SEYSLVPTPEANGKEVTCKVEHETLQ 84 (95)
T ss_pred EEEEEecCHHHCCCEEEEEEeCcccC
Confidence 46777776778888999999997533
No 226
>PHA03283 envelope glycoprotein E; Provisional
Probab=67.94 E-value=21 Score=30.85 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=30.1
Q ss_pred cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979 14 RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (152)
Q Consensus 14 ~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~ 51 (152)
..+.+.|.|.+++.+++|.|+--..|..|.....+.|+
T Consensus 130 t~~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvt 167 (542)
T PHA03283 130 TPERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVT 167 (542)
T ss_pred cCCCCeeEEEecccccCeEEEEEecCCCceEEEEEEEE
Confidence 34568899999999999999999999877544444444
No 227
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=67.88 E-value=16 Score=23.80 Aligned_cols=27 Identities=7% Similarity=0.137 Sum_probs=20.6
Q ss_pred EeEEEEceeCCCCCEEEEEEEEcCCCc
Q psy15979 17 RHTLMIRKVVASDFGNYSCEATNPMGK 43 (152)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~ 43 (152)
.+.|.+.....+|.-.|+|++.|..-.
T Consensus 58 ~S~l~~~p~~~d~G~~~tC~v~h~~l~ 84 (95)
T cd05719 58 TSEYRLVPSREANGKELTCVVSHPTLQ 84 (95)
T ss_pred EEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 356778777777888999999997643
No 228
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=63.60 E-value=18 Score=23.13 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=13.8
Q ss_pred EceeCCCCCEEEEEEEEcC
Q psy15979 22 IRKVVASDFGNYSCEATNP 40 (152)
Q Consensus 22 I~~v~~~D~G~YtC~A~N~ 40 (152)
...+...|.+.|+|++.+.
T Consensus 64 ~l~v~~~~~~~ytC~V~H~ 82 (93)
T cd07698 64 TLEVPPEDKARYSCRVEHS 82 (93)
T ss_pred EEEECCCCCCEEEEEEEeC
Confidence 4455556889999988864
No 229
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=62.79 E-value=39 Score=22.55 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=11.8
Q ss_pred CCeEEEEEEEEcCCCCCC
Q psy15979 108 TNQYQNRRLVRKRFDRGN 125 (152)
Q Consensus 108 ~~~Y~~rV~A~N~~G~g~ 125 (152)
.+.|.| .|.|.-+...
T Consensus 77 ~G~YTf--~a~N~~~~~s 92 (101)
T cd05860 77 GGTYTF--LVSNSDASAS 92 (101)
T ss_pred CcEEEE--EEECCCCeEE
Confidence 899999 5588766553
No 230
>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=62.56 E-value=6.5 Score=24.97 Aligned_cols=18 Identities=17% Similarity=0.110 Sum_probs=15.4
Q ss_pred ceEEecCCCeEEEEEEEE
Q psy15979 101 MSNQLTGTNQYQNRRLVR 118 (152)
Q Consensus 101 ~~~~L~~~~~Y~~rV~A~ 118 (152)
.-|.|++++.|.|.|.|+
T Consensus 63 ~DY~LEpGgdY~Ftirak 80 (80)
T PF11344_consen 63 SDYQLEPGGDYSFTIRAK 80 (80)
T ss_pred cceeccCCCceEEEEecC
Confidence 357999999999999874
No 231
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=59.80 E-value=14 Score=25.40 Aligned_cols=23 Identities=13% Similarity=0.297 Sum_probs=15.3
Q ss_pred eEEEEceeCCCCCEEEEEEEEcC
Q psy15979 18 HTLMIRKVVASDFGNYSCEATNP 40 (152)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~ 40 (152)
+.|.|..-..++.+.|+|++.+.
T Consensus 108 s~L~v~~~~~~~g~~ytC~V~H~ 130 (139)
T cd05771 108 SHLTLEPGTEDAGATYTCRVSHV 130 (139)
T ss_pred EEEEecCCccCCCCEEEEEEEcC
Confidence 44555544445577999999874
No 232
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=59.27 E-value=6.2 Score=32.98 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.9
Q ss_pred CEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979 16 SRHTLMIRKVVASDFGNYSCEATNP 40 (152)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~ 40 (152)
..++|+|.++.-+.+|-|+|+|...
T Consensus 344 k~STLTIkka~I~N~GCY~~~a~~g 368 (500)
T PHA02914 344 KNSTLTIKKAHINNAGCYEAQAFMG 368 (500)
T ss_pred hhceEEeeeEEEEcCCceEEEEecC
Confidence 5689999999999999999999875
No 233
>PHA03271 envelope glycoprotein C; Provisional
Probab=53.65 E-value=1.4e+02 Score=25.38 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=29.2
Q ss_pred cCCCcEEEE--EcCCEeEEEEceeCCCCCEEEEEEEEcCCCce
Q psy15979 4 ETTERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNPMGKH 44 (152)
Q Consensus 4 ~~~~r~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~ 44 (152)
..+++|.|- ...+...|.|++|.-.|.|.|.....+.....
T Consensus 191 ~~~~ky~i~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~ 233 (490)
T PHA03271 191 PHGNKYFIWINKTTNTMGVEIRNVDYADNGYIQVIMRDPFNRP 233 (490)
T ss_pred CCCceeEEeeccccceeeEEEEEeecccceEEEEEecCCCCCc
Confidence 457888773 23456789999999999997766655544443
No 234
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=49.11 E-value=41 Score=21.78 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=15.5
Q ss_pred eEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979 18 HTLMIRKVVASDFGNYSCEATNPMG 42 (152)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~~G 42 (152)
+.|.|..-.-.+...|+|+++....
T Consensus 63 S~L~v~~~~w~~~~~ytC~V~H~~~ 87 (94)
T cd05847 63 SELNVTQEDWKSGKTYTCKVTHQGT 87 (94)
T ss_pred EEEEEchHHhcCCCeEEEEEEECCe
Confidence 3455554333456789999986543
No 235
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=48.36 E-value=1.2e+02 Score=28.00 Aligned_cols=101 Identities=16% Similarity=0.151 Sum_probs=56.1
Q ss_pred EEEEceeCCCCCEEEEE--EEEcCCCceE-----EEEEEecCCCCceeecCCCCCCCCeEEEEEEec--CCCCcceEEEE
Q psy15979 19 TLMIRKVVASDFGNYSC--EATNPMGKHR-----AYLELSGKPNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIK 89 (152)
Q Consensus 19 ~L~I~~v~~~D~G~YtC--~A~N~~G~~~-----~~~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~--~~~pi~~y~~~ 89 (152)
.+.+.++- .|.|+- +|-|..|... ....|.++-.|+.... ....+.+.|.+. =+.|...|.++
T Consensus 661 ~~~~~gi~---~GqY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~-----t~~a~~it~~~~l~v~dPt~~~d~~ 732 (952)
T COG4733 661 GFDVEGIP---AGQYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAM-----IYDAVIITLVIRLVVGDPTGAVDIT 732 (952)
T ss_pred ceeecCcC---ccceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCccc-----ccceEEEEeeeeEEEecCCcceEEe
Confidence 45666664 488954 7888887542 2466666644432221 122233333321 11233445555
Q ss_pred EEECCCCC----------------CCcceEEecCCCeEEEEEEEEcCCCCCCCC
Q psy15979 90 YRKIPGNE----------------PSPMSNQLTGTNQYQNRRLVRKRFDRGNST 127 (152)
Q Consensus 90 ~r~~~~~~----------------~~~~~~~L~~~~~Y~~rV~A~N~~G~g~~s 127 (152)
+....... +...+..|.++..|-|++++.|..|...+-
T Consensus 733 ~sei~~s~~~d~~~~Ar~LG~~~~~~~~~~~i~~g~~~~F~~R~Vn~vG~~~~~ 786 (952)
T COG4733 733 STEIRSAVIADGNFQARSLGNLNYPGLFSVGIQAGLTFWFRNRNVDLVGNNDKW 786 (952)
T ss_pred eeeeeeeccccchhHHhhhhccccccccccCcCCCceEEEEeeecccccccccc
Confidence 54332211 111334788899999999999999987654
No 236
>PHA03189 UL14 tegument protein; Provisional
Probab=47.02 E-value=35 Score=27.57 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=23.5
Q ss_pred CcEEEEEcCCEeEEEEc-eeCCCCCEEEEEEEEcCCC
Q psy15979 7 ERRIMETRGSRHTLMIR-KVVASDFGNYSCEATNPMG 42 (152)
Q Consensus 7 ~r~~i~~~~~~~~L~I~-~v~~~D~G~YtC~A~N~~G 42 (152)
.+++++.-+-...|++. ++..+-+|.|.|+..|..-
T Consensus 121 ~~W~Fedlg~aq~ltLtF~v~t~taG~Y~CvLrN~tH 157 (348)
T PHA03189 121 ASWKFEDLGAAQRLTLTFRVSTSTAGMYECVLRNETH 157 (348)
T ss_pred ceeeeecccceeEEEEEEEEEecccceEEEEeccccc
Confidence 35566544444444432 5677889999999999643
No 237
>PHA03286 envelope glycoprotein E; Provisional
Probab=46.98 E-value=57 Score=27.79 Aligned_cols=34 Identities=18% Similarity=0.122 Sum_probs=29.3
Q ss_pred cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEE
Q psy15979 14 RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY 47 (152)
Q Consensus 14 ~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~ 47 (152)
.+..+.|+|.|.+.+++|.|+--..|.-|.+...
T Consensus 123 t~~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~ 156 (492)
T PHA03286 123 TGRGKELTILNASSQNAGIYIRYSRNGTRTAVMD 156 (492)
T ss_pred cCCCCceEEeeccccccceEEEEEcCCCCcEEEE
Confidence 3456789999999999999999999998887664
No 238
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=46.92 E-value=42 Score=20.80 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=18.5
Q ss_pred eEEEEceeCCCCCEEEEEEEEcCCCc
Q psy15979 18 HTLMIRKVVASDFGNYSCEATNPMGK 43 (152)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~~G~ 43 (152)
+.|.+..-..++...++|+|.|..-.
T Consensus 61 S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 61 STLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp EEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred EEEEEEcChHHCCeEEEEEEECCccC
Confidence 45666555456778899999997543
No 239
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=46.39 E-value=45 Score=28.11 Aligned_cols=39 Identities=10% Similarity=0.255 Sum_probs=26.5
Q ss_pred EeEEEEceeCCCCCEEEEEEEE-cCCCceEEEEEEecCCC
Q psy15979 17 RHTLMIRKVVASDFGNYSCEAT-NPMGKHRAYLELSGKPN 55 (152)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~-N~~G~~~~~~~v~~~P~ 55 (152)
.-.+.+.|++.+|.|.|+|+-- |..-+-+..+.|..-|.
T Consensus 80 eYsf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrVmPK 119 (500)
T PHA02914 80 EYSFIEENIGEHEDGDFKCIFYLGDNESHKHEILVRKAPK 119 (500)
T ss_pred eeEEEecCcccccCCcEEEEEEeCCceeEEEEEEEEEccc
Confidence 3467888999999999999764 33333334566665553
No 240
>PHA03282 envelope glycoprotein E; Provisional
Probab=44.83 E-value=21 Score=30.47 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=24.6
Q ss_pred CEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46 (152)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~ 46 (152)
++-.|.|.|...+++|-|.|++. -.|..++
T Consensus 331 n~VdL~F~nAp~saSGLYVfVl~-yNGHVeA 360 (540)
T PHA03282 331 HTVNLQLRDASEASGGLYVCVVY-VNGHVHA 360 (540)
T ss_pred CccceEecCCCcccCceEEEEEE-ECCeeee
Confidence 44589999999999999999887 4566655
No 241
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=43.59 E-value=7.8 Score=32.74 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=0.0
Q ss_pred CEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46 (152)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~ 46 (152)
+.+.|.|.+++++|+|.|+-...|.-|....
T Consensus 87 ~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~ 117 (439)
T PF02480_consen 87 NKGGLSILNATEQDSGVYTLYVRNDSGWAHQ 117 (439)
T ss_dssp -------------------------------
T ss_pred cCCceEEeccccccCeeEEEEecCCCCceEE
Confidence 3467999999999999999999988777655
No 242
>PHA03286 envelope glycoprotein E; Provisional
Probab=42.61 E-value=21 Score=30.26 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=22.4
Q ss_pred EEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979 19 TLMIRKVVASDFGNYSCEATNPMGKHRA 46 (152)
Q Consensus 19 ~L~I~~v~~~D~G~YtC~A~N~~G~~~~ 46 (152)
.|.+.|++.+|+|-|-|++. --|..++
T Consensus 308 nL~f~nA~~s~SGLYVfVl~-yNGH~eA 334 (492)
T PHA03286 308 SFRLANAQPTDAGLYVVVAL-YNGRPLA 334 (492)
T ss_pred ceeecCCCcccCceEEEEEE-ECCccee
Confidence 49999999999999999887 4555555
No 243
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=42.42 E-value=69 Score=19.69 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=13.4
Q ss_pred EEEEceeCCCCCEEEEEEEEcCC
Q psy15979 19 TLMIRKVVASDFGNYSCEATNPM 41 (152)
Q Consensus 19 ~L~I~~v~~~D~G~YtC~A~N~~ 41 (152)
.|.|. ..+...|+|+++...
T Consensus 58 ~l~v~---~~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 58 SLTVT---WNSGDEYSCRVTHES 77 (83)
T ss_dssp EEEEE---TTTTGGEEEEEEETT
T ss_pred EEEec---CCCCCEEEEEEEECC
Confidence 45554 556668999988654
No 244
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=42.18 E-value=71 Score=20.70 Aligned_cols=13 Identities=15% Similarity=0.483 Sum_probs=9.1
Q ss_pred CCCCCEEEEEEEE
Q psy15979 26 VASDFGNYSCEAT 38 (152)
Q Consensus 26 ~~~D~G~YtC~A~ 38 (152)
...+...|+|.++
T Consensus 68 ~~~~~~~ysC~V~ 80 (93)
T cd05770 68 TPTKGDEYACRVR 80 (93)
T ss_pred CCCCCCeEEEEEE
Confidence 3567777888776
No 245
>PHA03283 envelope glycoprotein E; Provisional
Probab=42.16 E-value=30 Score=29.91 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=27.8
Q ss_pred EEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979 10 IMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46 (152)
Q Consensus 10 ~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~ 46 (152)
.+....++-.|.+.|+..+++|-|-|++. --|..++
T Consensus 307 ~l~~~~~~v~L~f~nap~~~SGLYVfVv~-yNgHveA 342 (542)
T PHA03283 307 FIQPAQNRVDLLFKNAPASASGLYVFVLL-YNGHPEA 342 (542)
T ss_pred cceecCCCcceEeccCCcccCceEEEEEE-ECCeeee
Confidence 34445566789999999999999999887 4555555
No 246
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=42.05 E-value=70 Score=22.54 Aligned_cols=60 Identities=17% Similarity=0.129 Sum_probs=32.9
Q ss_pred CCeEEEEEEecCCCCcceEEEEEEECC--C--CC-CCcceEEecCCCeEEEEEEEEcCCCCCCCC
Q psy15979 68 PNSYNITWMVSSYTPLEEFKIKYRKIP--G--NE-PSPMSNQLTGTNQYQNRRLVRKRFDRGNST 127 (152)
Q Consensus 68 ~~~~~L~W~~~~~~pi~~y~~~~r~~~--~--~~-~~~~~~~L~~~~~Y~~rV~A~N~~G~g~~s 127 (152)
.-.+.++|..=.+..-..|++.+-... . .. .....+....++.|+++|..-|.-|.+.+.
T Consensus 37 ~v~V~VtwN~WsG~~Gd~~kly~dG~~V~tG~~~~~~~a~~~~~~gG~y~~~VeLCN~~GCS~S~ 101 (133)
T PF08329_consen 37 QVDVSVTWNVWSGTNGDTAKLYFDGVLVWTGPSPQQKSATFTVTKGGRYQMQVELCNADGCSTSA 101 (133)
T ss_dssp SEEEEEEEE-SSS---SEEEEEETTEEEEEEE--SEEEEEEEE-S-EEEEEEEEEEETTEEEE--
T ss_pred ceEEEEEEEEecCCCCCEEEEEECCEEEEeCCCccCceEEEEecCCCEEEEEEEEECCCCcccCC
Confidence 357788898744444455666541110 0 00 112456777899999999999999966544
No 247
>PHA03269 envelope glycoprotein C; Provisional
Probab=41.50 E-value=1.8e+02 Score=25.23 Aligned_cols=33 Identities=27% Similarity=0.303 Sum_probs=24.2
Q ss_pred CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979 7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATN 39 (152)
Q Consensus 7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N 39 (152)
++|.+-. ....-.|.|.++...+.|.|+=+.-|
T Consensus 276 ~~yi~p~~a~p~~~pL~I~sltaATeGvY~Wrv~~ 310 (566)
T PHA03269 276 EKYIIPDRKTTSDFSLHILSLDASTEGTYIWRVIH 310 (566)
T ss_pred ceEEeccCCCCCccceEEeecccccCceEEEEEec
Confidence 5565531 22345699999999999999988654
No 248
>KOG4152|consensus
Probab=41.03 E-value=22 Score=31.04 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=20.2
Q ss_pred EecCCCeEEEEEEEEcCCCCCCCC
Q psy15979 104 QLTGTNQYQNRRLVRKRFDRGNST 127 (152)
Q Consensus 104 ~L~~~~~Y~~rV~A~N~~G~g~~s 127 (152)
.|-.+..|.|||.|.|..|.|..+
T Consensus 653 ~lv~Gq~yrfrV~aIng~G~gp~s 676 (830)
T KOG4152|consen 653 SLVTGQAYRFRVTAINGKGPGPAS 676 (830)
T ss_pred ccccccceeeeeeeeeccCCCchh
Confidence 355599999999999999988755
No 249
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=40.85 E-value=48 Score=21.59 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=12.0
Q ss_pred EEEEceeCCCCCEEEEEEEEc
Q psy15979 19 TLMIRKVVASDFGNYSCEATN 39 (152)
Q Consensus 19 ~L~I~~v~~~D~G~YtC~A~N 39 (152)
.|.+..-...+...|+|.+.-
T Consensus 67 ~L~v~~~~w~~~~~~sC~V~H 87 (100)
T cd07699 67 YLTLTKSDWNKHKVYTCEVTH 87 (100)
T ss_pred EEEEcHHHhCCCCeEEEEEEe
Confidence 455544333345778887764
No 250
>PHA03240 envelope glycoprotein M; Provisional
Probab=39.13 E-value=15 Score=28.11 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=25.3
Q ss_pred CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCce
Q psy15979 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH 44 (152)
Q Consensus 7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~ 44 (152)
.++..+. .+++|.|.+|..+|.|+|.-.-....|..
T Consensus 96 t~i~y~C--~NstL~i~~vn~sd~~nYcr~k~~~~g~~ 131 (258)
T PHA03240 96 SFILYEC--HNSTLIIAHLNLSDAGEYCRKKCPPKGDC 131 (258)
T ss_pred CceEEEe--ccceEEEEEEeecCcchhhhccCCCCCCc
Confidence 3445554 36789999999999999954444456654
No 251
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=38.86 E-value=78 Score=20.50 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=7.6
Q ss_pred CCCCEEEEEEEE
Q psy15979 27 ASDFGNYSCEAT 38 (152)
Q Consensus 27 ~~D~G~YtC~A~ 38 (152)
+.+...|+|++.
T Consensus 70 ~~~~~~ytC~V~ 81 (94)
T cd05767 70 PEEGDIYSCIVE 81 (94)
T ss_pred CCCCCeEEEEEE
Confidence 345557888765
No 252
>COG3422 Uncharacterized conserved protein [Function unknown]
Probab=38.07 E-value=25 Score=21.14 Aligned_cols=15 Identities=13% Similarity=0.169 Sum_probs=12.4
Q ss_pred cCCCeEEEEEEEEcC
Q psy15979 106 TGTNQYQNRRLVRKR 120 (152)
Q Consensus 106 ~~~~~Y~~rV~A~N~ 120 (152)
..+++|.||+.|.|.
T Consensus 10 dk~Ge~rfrlkA~N~ 24 (59)
T COG3422 10 DKAGEYRFRLKAANG 24 (59)
T ss_pred cCCCcEEEEEEccCc
Confidence 348999999999883
No 253
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=35.78 E-value=1.3e+02 Score=19.98 Aligned_cols=56 Identities=13% Similarity=0.123 Sum_probs=34.5
Q ss_pred CCeEEEEEEecCCCC-cceEEEEEEECCCCC--------CCcce-------EEecC---CCeEEEEEEEEcCCCC
Q psy15979 68 PNSYNITWMVSSYTP-LEEFKIKYRKIPGNE--------PSPMS-------NQLTG---TNQYQNRRLVRKRFDR 123 (152)
Q Consensus 68 ~~~~~L~W~~~~~~p-i~~y~~~~r~~~~~~--------~~~~~-------~~L~~---~~~Y~~rV~A~N~~G~ 123 (152)
-...+--|..++... ...|++.|....... ....+ +.-.+ ...|.+.|.|.|..|.
T Consensus 21 ~etftC~W~~g~~~~l~~~y~L~Y~~~~~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~y~i~V~a~~~~~~ 95 (104)
T PF09067_consen 21 METFTCFWEPGSEGNLPTNYTLFYKKEGEEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVPYCIQVEATNALGS 95 (104)
T ss_dssp SS-EEEEEEEESSSTSTCEEEEEEEETTSEEEEESESSTTETTEEEEEEEEE-CCGCSSSSEEEEEEEEEETTEE
T ss_pred CCcEEEEeeCCCCCCCCCcEEEEEEeCCCCCccCCCeEecCCCCceeEEEEcCCCCeEEEEEEEEEEEeccCCCc
Confidence 466777888754322 234999998775211 11122 22223 8999999999999885
No 254
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=34.07 E-value=29 Score=29.31 Aligned_cols=31 Identities=19% Similarity=0.098 Sum_probs=22.4
Q ss_pred CCEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979 15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46 (152)
Q Consensus 15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~ 46 (152)
.+.-.|.|.|+..+++|-|-|++. --|..++
T Consensus 266 ~~~~~l~f~~a~~~~sGLYv~V~~-~nghv~a 296 (439)
T PF02480_consen 266 SNGVDLQFTNAPESASGLYVFVVY-YNGHVEA 296 (439)
T ss_dssp TTSSSEEESS--GGG-EEEEEEEE-ETTEEEE
T ss_pred CCCcceEecCCCcccCceEEEEEE-ECCeeee
Confidence 445679999999999999999887 5566665
No 255
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=32.06 E-value=1e+02 Score=20.10 Aligned_cols=8 Identities=13% Similarity=0.567 Sum_probs=5.9
Q ss_pred EEEEEEEc
Q psy15979 32 NYSCEATN 39 (152)
Q Consensus 32 ~YtC~A~N 39 (152)
.|+|.++=
T Consensus 76 ~ysC~V~H 83 (96)
T cd07697 76 KFRCIYKH 83 (96)
T ss_pred eEEEEEEE
Confidence 49998764
No 256
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=28.40 E-value=37 Score=21.22 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=12.9
Q ss_pred eeCCCCCEEEEEEEEcC
Q psy15979 24 KVVASDFGNYSCEATNP 40 (152)
Q Consensus 24 ~v~~~D~G~YtC~A~N~ 40 (152)
+.+++-+-.|-|+|+|.
T Consensus 56 ~~kED~stDYAcIa~~k 72 (74)
T PF05083_consen 56 DLKEDPSTDYACIAKNK 72 (74)
T ss_pred ccccCCCcCeeeeeccC
Confidence 33566677899999995
No 257
>COG4729 Uncharacterized conserved protein [Function unknown]
Probab=28.33 E-value=1.6e+02 Score=21.29 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=19.0
Q ss_pred eEEecCCCeEEEEEEEEcCCCCCCCCCCcccccc
Q psy15979 102 SNQLTGTNQYQNRRLVRKRFDRGNSTNGGLIVPK 135 (152)
Q Consensus 102 ~~~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~~~ 135 (152)
.|.+.++.-|..+-.-+ .+|+|-|+..++.+.+
T Consensus 61 ~Y~v~~~~l~L~et~~~-s~GaG~Ps~~~~t~~d 93 (156)
T COG4729 61 DYRVSGGGLLLEETRVR-SFGAGMPSPEGATLED 93 (156)
T ss_pred eEEEcCCEEEEEEEEee-ecccCCCcCCceEEeC
Confidence 34555554444433222 4899999988855443
No 258
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=28.26 E-value=77 Score=20.76 Aligned_cols=10 Identities=10% Similarity=0.255 Sum_probs=6.5
Q ss_pred CCEEEEEEEE
Q psy15979 29 DFGNYSCEAT 38 (152)
Q Consensus 29 D~G~YtC~A~ 38 (152)
+...|+|++.
T Consensus 79 ~~~~ytC~V~ 88 (102)
T cd05768 79 AGDVFTCVVG 88 (102)
T ss_pred CCCcEEEEeE
Confidence 4456888766
No 259
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
Probab=27.46 E-value=75 Score=18.03 Aligned_cols=14 Identities=7% Similarity=-0.038 Sum_probs=11.1
Q ss_pred CeEEEEEEEEcCCC
Q psy15979 109 NQYQNRRLVRKRFD 122 (152)
Q Consensus 109 ~~Y~~rV~A~N~~G 122 (152)
..|.|.|.|.+..|
T Consensus 36 G~y~~~vtatd~~G 49 (49)
T PF05345_consen 36 GTYTFTVTATDGSG 49 (49)
T ss_pred cEEEEEEEEEcCCC
Confidence 57888888888765
No 260
>PHA03273 envelope glycoprotein C; Provisional
Probab=26.88 E-value=4.1e+02 Score=22.88 Aligned_cols=27 Identities=22% Similarity=0.170 Sum_probs=21.8
Q ss_pred eEEEEceeCCCCCEEEEEEEEcCCCce
Q psy15979 18 HTLMIRKVVASDFGNYSCEATNPMGKH 44 (152)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~ 44 (152)
-.|+|..++..++|.|+=+.-|..|..
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~ 224 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTL 224 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCce
Confidence 459999999999999998876655543
No 261
>cd02848 Chitinase_N_term Chitinase N-terminus domain. Chitinases hydrolyze the abundant natural biopolymer chitin, producing smaller chito-oligosaccharides. Chitin consists of multiple N-acetyl-D-glucosamine (NAG) residues connected via beta-1,4-glycosidic linkages and is an important structural element of fungal cell wall and arthropod exoskeletons. On the basis of the mode of chitin hydrolysis, chitinases are classified as random, endo-, and exo-chitinases and based on sequence criteria, chitinases belong to families 18 and 19 of glycosyl hydrolases. The N-terminus of chitinase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitob
Probab=26.82 E-value=2.1e+02 Score=19.38 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=35.9
Q ss_pred CeEEEEEEecCCCCcceEEEEEEE--CCCCC----CCcceEEecCCCeEEEEEEEEcCCCCCCC
Q psy15979 69 NSYNITWMVSSYTPLEEFKIKYRK--IPGNE----PSPMSNQLTGTNQYQNRRLVRKRFDRGNS 126 (152)
Q Consensus 69 ~~~~L~W~~~~~~pi~~y~~~~r~--~~~~~----~~~~~~~L~~~~~Y~~rV~A~N~~G~g~~ 126 (152)
-.+.++|.+=++.+-..|.+.+-. .-... ....++.+..++.|+.+|..-|.=|.+.+
T Consensus 34 v~V~V~wnvWsG~~Gd~a~vl~dg~~V~~G~~~~~~~~at~~v~kgG~y~m~V~lCn~dGCS~S 97 (106)
T cd02848 34 ADVSVKWNAWSGDPGDTYKVLLDGKEVWSGALTGSSGTATFKVGKGGRYQMQVALCNGDGCSTS 97 (106)
T ss_pred eEEEEEEeeecCCCCcEEEEEECCeEEEcccCCCCccEEEEEeCCCCeEEEEEEEECCCCccCc
Confidence 456777877555555556665421 10111 11345678889999999999999885433
No 262
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=26.39 E-value=81 Score=22.98 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=19.2
Q ss_pred CEeEEEEceeCCCCCEEEEEEEE
Q psy15979 16 SRHTLMIRKVVASDFGNYSCEAT 38 (152)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~ 38 (152)
..--|+|.+-+.+|+|.|.-+..
T Consensus 122 ~~~lL~i~~p~~~dsG~Y~lRV~ 144 (161)
T PF01688_consen 122 NGVLLRIRNPRPEDSGIYYLRVW 144 (161)
T ss_pred cceEEEeCCCCcccceEEEEEEE
Confidence 34458999999999999988665
No 263
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=26.34 E-value=1e+02 Score=17.69 Aligned_cols=28 Identities=4% Similarity=-0.019 Sum_probs=20.9
Q ss_pred CCCeEEEEEEEEcCCCCCCCCCCccccc
Q psy15979 107 GTNQYQNRRLVRKRFDRGNSTNGGLIVP 134 (152)
Q Consensus 107 ~~~~Y~~rV~A~N~~G~g~~s~~~~~~~ 134 (152)
..+.|.+.|.|....|.........|++
T Consensus 22 ~dG~y~itv~a~D~AGN~s~~~~~~~ti 49 (54)
T PF13754_consen 22 ADGTYTITVTATDAAGNTSTSSSVTFTI 49 (54)
T ss_pred CCccEEEEEEEEeCCCCCCCccceeEEE
Confidence 3789999999999999876554443433
No 264
>COG5475 Uncharacterized small protein [Function unknown]
Probab=25.81 E-value=1.6e+02 Score=17.63 Aligned_cols=37 Identities=14% Similarity=0.301 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46 (152)
Q Consensus 6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~ 46 (152)
++-.++.+ ..-.++|...+.+ |.|.|.=-|..|.-..
T Consensus 8 gdvV~lKs--GGP~Mtvs~~ss~--Gmy~C~Wf~g~g~~~~ 44 (60)
T COG5475 8 GDVVTLKS--GGPRMTVSGYSSD--GMYECRWFDGYGVKRE 44 (60)
T ss_pred CcEEEeec--CCceEEEeccccC--CeEEEEEecCCCcccc
Confidence 34445543 3446788777533 9999999999985444
No 265
>KOG0200|consensus
Probab=25.04 E-value=63 Score=28.33 Aligned_cols=24 Identities=38% Similarity=0.620 Sum_probs=21.2
Q ss_pred CEeEEEEceeCCCCCEEEEEEEEc
Q psy15979 16 SRHTLMIRKVVASDFGNYSCEATN 39 (152)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N 39 (152)
....+.+..+...|.|.|+|.+.|
T Consensus 11 ~~~~~~~~~~~~~~~~~y~~~~~~ 34 (609)
T KOG0200|consen 11 NHWFLIIDSVVPGDKGFYTCLVSN 34 (609)
T ss_pred ccceEEEEEEEecCCccEEEEEec
Confidence 345788889999999999999999
No 266
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=24.36 E-value=1.2e+02 Score=19.64 Aligned_cols=21 Identities=10% Similarity=0.205 Sum_probs=10.9
Q ss_pred EEEEceeCCCCCEEEEEEEEc
Q psy15979 19 TLMIRKVVASDFGNYSCEATN 39 (152)
Q Consensus 19 ~L~I~~v~~~D~G~YtC~A~N 39 (152)
.|+|..-.-...-.|+|+++-
T Consensus 65 ~L~v~~~~w~~~~~ytC~V~H 85 (95)
T cd04985 65 QLTVPASEWKGKESFYCKVEH 85 (95)
T ss_pred EEEEeHHHcCCCCcEEEEEEe
Confidence 355443321124568888774
No 267
>PHA03281 envelope glycoprotein E; Provisional
Probab=23.88 E-value=75 Score=27.83 Aligned_cols=31 Identities=19% Similarity=0.060 Sum_probs=24.6
Q ss_pred CCEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979 15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46 (152)
Q Consensus 15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~ 46 (152)
.+.-.|.+.++..+++|-|.|++. --|..++
T Consensus 472 ~n~vdL~F~nApasaSGLYVfVl~-yNGHVeA 502 (642)
T PHA03281 472 DGGSALKFVDAAESLSGLYVFIIH-FNGHVEA 502 (642)
T ss_pred CCCcceEeccCCcccCceEEEEEE-ECCeeee
Confidence 344569999999999999999887 4565555
No 268
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=23.26 E-value=1.7e+02 Score=18.69 Aligned_cols=14 Identities=21% Similarity=0.422 Sum_probs=8.9
Q ss_pred CCCCCEEEEEEEEc
Q psy15979 26 VASDFGNYSCEATN 39 (152)
Q Consensus 26 ~~~D~G~YtC~A~N 39 (152)
..++...|+|++.-
T Consensus 68 ~~~~~~~ysC~V~H 81 (94)
T cd05766 68 TPSRGDTYTCVVEH 81 (94)
T ss_pred cCCCCCEEEEEEEe
Confidence 34456678887764
No 269
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=23.25 E-value=2.1e+02 Score=18.20 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=21.7
Q ss_pred ceEEEEEEECCCCC-C-----Cc---ceEEecCCCeEEEEEEE
Q psy15979 84 EEFKIKYRKIPGNE-P-----SP---MSNQLTGTNQYQNRRLV 117 (152)
Q Consensus 84 ~~y~~~~r~~~~~~-~-----~~---~~~~L~~~~~Y~~rV~A 117 (152)
..|.+.|++..... . .. ....|.+++.|=|+|.|
T Consensus 44 ~~Y~v~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~YCv~V~~ 86 (106)
T PF09294_consen 44 LSYNVSYWKNGSNEKKKEIETKNSSVTLSDLKPGTNYCVSVQA 86 (106)
T ss_dssp -EEEEEEEETTTSCEEEEEESSSEEEEEES--TTSEEEEEEEE
T ss_pred eEEEEEEEeCCCccceEEEeecCCEEEEeCCCCCCCEEEEEEE
Confidence 46999988887662 1 11 12357779999999988
No 270
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=22.71 E-value=2.4e+02 Score=18.75 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=17.1
Q ss_pred CCCCeEEEEEEecCCCCcceEEEE
Q psy15979 66 RLPNSYNITWMVSSYTPLEEFKIK 89 (152)
Q Consensus 66 ~~~~~~~L~W~~~~~~pi~~y~~~ 89 (152)
..+..++++|.+++..|.....+.
T Consensus 13 ~~G~~vtv~C~v~~v~P~~~l~v~ 36 (99)
T cd07689 13 EEGKPVTVKCEVPDVYPFDRLEIE 36 (99)
T ss_pred cCCceEEEEEEecCcccCCceEEE
Confidence 357889999999877676444443
No 271
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=22.43 E-value=1.4e+02 Score=19.24 Aligned_cols=9 Identities=22% Similarity=0.829 Sum_probs=5.6
Q ss_pred EEEEEEEEc
Q psy15979 31 GNYSCEATN 39 (152)
Q Consensus 31 G~YtC~A~N 39 (152)
-.|+|.+.-
T Consensus 76 ~~ysC~V~H 84 (96)
T cd07696 76 DTFQCKVTH 84 (96)
T ss_pred CcEEEEEEC
Confidence 457776664
No 272
>COG3291 FOG: PKD repeat [General function prediction only]
Probab=21.37 E-value=4e+02 Score=20.76 Aligned_cols=64 Identities=8% Similarity=0.072 Sum_probs=40.2
Q ss_pred eEEEEEEecCCCCcceEEEEEEECCCCC--CCcceEEecCCCeEEEEEEEEcCCCCCCCCCCcccc
Q psy15979 70 SYNITWMVSSYTPLEEFKIKYRKIPGNE--PSPMSNQLTGTNQYQNRRLVRKRFDRGNSTNGGLIV 133 (152)
Q Consensus 70 ~~~L~W~~~~~~pi~~y~~~~r~~~~~~--~~~~~~~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~ 133 (152)
.+..+|.-.+...+..|.|.+-...... .....+.....+.|.+.+.+.|..|....+....+.
T Consensus 95 pltV~ftd~S~~~~t~w~Wdf~d~~~~~ste~np~htY~~~G~YtV~LTv~N~~g~dt~~~t~~i~ 160 (297)
T COG3291 95 PLTVNFTDTSTNEATSWSWDFGDGGVTTSTEQNPVHTYTDAGTYTVTLTVSNSTGSDSKTKTDYVT 160 (297)
T ss_pred cceEEeeecccCCcceeeeEcCCCceeEecccCcceEEecCCceEEEEEEecCCCCCcceeeeEEE
Confidence 4455566555444556666654432111 112456677789999999999999988766655554
No 273
>COG5140 UFD1 Ubiquitin fusion-degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.10 E-value=2.5e+02 Score=22.20 Aligned_cols=39 Identities=8% Similarity=0.012 Sum_probs=32.5
Q ss_pred ccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCC
Q psy15979 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM 41 (152)
Q Consensus 3 l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~ 41 (152)
|..++-+.+.-++....+.|..|.++++.+-.|+.+..+
T Consensus 154 Lt~~D~iei~ynd~v~~Ik~~~v~pe~S~~~i~vveTDL 192 (331)
T COG5140 154 LTEGDEIEIQYNDEVGSIKFTVVHPEPSANAIYVVETDL 192 (331)
T ss_pred cccCCEEEEEECCeeeEEEEEEeccCCCcceEEEEecce
Confidence 455677888777788889999999999999999988754
No 274
>KOG0238|consensus
Probab=20.80 E-value=1.2e+02 Score=26.65 Aligned_cols=28 Identities=11% Similarity=0.185 Sum_probs=23.5
Q ss_pred CCeEEEEEEEEcCCCCCCCCCCcccccc
Q psy15979 108 TNQYQNRRLVRKRFDRGNSTNGGLIVPK 135 (152)
Q Consensus 108 ~~~Y~~rV~A~N~~G~g~~s~~~~~~~~ 135 (152)
+..+++|+.|+|.+|..-|+..-+.--.
T Consensus 328 GhafE~RiyAEdp~~~f~P~~G~L~~~~ 355 (670)
T KOG0238|consen 328 GHAFEARIYAEDPYKGFLPSAGRLVYYS 355 (670)
T ss_pred ceEEEEEEeecCCcccCCCCCccceeec
Confidence 7889999999999999999987755333
No 275
>KOG0859|consensus
Probab=20.10 E-value=1.9e+02 Score=21.96 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46 (152)
Q Consensus 6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~ 46 (152)
+.++....++ . ++ +...+|.=.|-|+|.+.+|....
T Consensus 41 n~k~tYs~d~--y--~F-h~l~~dg~tylcvadds~gR~ip 76 (217)
T KOG0859|consen 41 NSKFTYSCDG--Y--TF-HYLVEDGLTYLCVADDSAGRQIP 76 (217)
T ss_pred CCceEEecCC--e--EE-EEEEeCCeEEEEEEecccccccc
Confidence 4466665443 2 23 55578999999999999998654
Done!