RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15979
(152 letters)
>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 47.0 bits (110), Expect = 5e-08
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 1 MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
+ ET R +ET R + D G Y+ NP+G+ + L +
Sbjct: 77 LLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 127
>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId:
9606]}
Length = 101
Score = 43.3 bits (101), Expect = 5e-07
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 1 MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNPAI 58
+++ +E +E + L I G Y+ N +G +A + L+ KP+P
Sbjct: 39 KQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDP-- 96
Query: 59 FRSHPQG 65
P G
Sbjct: 97 ----PAG 99
>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis
elegans) [TaxId: 6239]}
Length = 97
Score = 39.9 bits (92), Expect = 1e-05
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNP 56
+ + G+ + L I +V D G Y+ A N G +L ++ P
Sbjct: 47 KYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEP 97
>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C,
different domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 40.0 bits (92), Expect = 1e-05
Identities = 7/44 (15%), Positives = 13/44 (29%)
Query: 8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
++ L I + G Y CE + + L+
Sbjct: 62 SYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLT 105
>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 38.9 bits (89), Expect = 3e-05
Identities = 12/50 (24%), Positives = 17/50 (34%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
L+ E +R + I K + GNY CE T +L
Sbjct: 52 HLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 101
>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 89
Score = 38.2 bits (88), Expect = 3e-05
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
L+I+ V D G Y C ATN G +
Sbjct: 54 SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 87
>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 38.4 bits (88), Expect = 4e-05
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSG 52
+ + L ++ V SD G Y C+ + +L + G
Sbjct: 44 YIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG 91
>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 126
Score = 38.5 bits (88), Expect = 5e-05
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ 64
TE + L I+ V SD G Y+C + + A +EL + +P + + +
Sbjct: 69 TELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE-DPFYWINPGR 126
>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}
Length = 97
Score = 37.9 bits (87), Expect = 6e-05
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
+ R +L++ VV SD GNY+C N G L
Sbjct: 52 IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 95
>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor
TrkA, different domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 107
Score = 36.8 bits (84), Expect = 2e-04
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 11 METRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ 64
L + + + GNY+ A NP G+ A + + NP F +P+
Sbjct: 56 ANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP--FEFNPE 107
>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 100
Score = 36.4 bits (83), Expect = 2e-04
Identities = 12/44 (27%), Positives = 15/44 (34%)
Query: 8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
L IR V +D Y C A N G+ A + L
Sbjct: 53 DEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 96
>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different
modules [TaxId: 9606]}
Length = 91
Score = 35.6 bits (81), Expect = 3e-04
Identities = 15/34 (44%), Positives = 16/34 (47%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
T I V ASD GNYS N GK A L+
Sbjct: 55 STFEISSVQASDEGNYSVVVENSEGKQEAEFTLT 88
>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 91
Score = 35.6 bits (81), Expect = 3e-04
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 10 IMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
+ S L I+ V D G Y CEA N G+ +
Sbjct: 47 TSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRII 88
>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}
Length = 109
Score = 35.7 bits (81), Expect = 4e-04
Identities = 13/44 (29%), Positives = 17/44 (38%)
Query: 8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
+ T L IR V D G Y+C A N +G L+
Sbjct: 64 AGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLT 107
>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens)
[TaxId: 9606]}
Length = 101
Score = 35.4 bits (80), Expect = 5e-04
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 1 MRLETTERRIMETRGSRHTLMIRKVVASDF-GNYSCEATNPMGKHRAYLELSGK 53
+ + R + + R L I + G Y C T+ G +A + L +
Sbjct: 48 LMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 101
>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein
phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 35.0 bits (79), Expect = 6e-04
Identities = 7/42 (16%), Positives = 12/42 (28%)
Query: 1 MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG 42
E ++ +R + + D G Y C G
Sbjct: 43 RDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGG 84
>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 34.8 bits (79), Expect = 6e-04
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 1 MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
+ R + G +H L+I +D YS T + ++L
Sbjct: 40 IIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAKLSVDL 89
>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 89
Score = 34.5 bits (78), Expect = 8e-04
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
L K+V D G Y C A N G A EL+
Sbjct: 53 GELRFSKLVLEDSGMYQCVAENKHGTVYASAELT 86
>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)
[TaxId: 9103]}
Length = 102
Score = 34.5 bits (78), Expect = 0.001
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
+L I +V D Y+C+A N +G+ EL
Sbjct: 65 CSLTISEVCGDDDAKYTCKAVNSLGEATCTAELL 98
>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different
modules [TaxId: 9606]}
Length = 98
Score = 34.1 bits (77), Expect = 0.001
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGK 53
+ L+IR V D + +A N G+ A+L + K
Sbjct: 51 IYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 98
>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 92
Score = 33.7 bits (76), Expect = 0.002
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
+ L IR + +D G Y CE + ++
Sbjct: 56 NYLQIRGIKKTDEGTYRCEGRILARGEINFKDI 88
>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 110
Score = 34.2 bits (77), Expect = 0.002
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRA 46
L+ V A D G Y C+A N G
Sbjct: 67 GDLIFDPVTAFDSGEYYCQAQNGYGTAMR 95
>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 94
Score = 33.5 bits (75), Expect = 0.002
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGK 43
+L+ + ASD G+Y C A P G
Sbjct: 58 GSLVFLRPQASDEGHYQCFAETPAGV 83
>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1
(ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 33.3 bits (75), Expect = 0.003
Identities = 5/51 (9%), Positives = 12/51 (23%)
Query: 1 MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
+ +R + T + +SC + L +
Sbjct: 43 RGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFEN 93
>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 115
Score = 33.1 bits (74), Expect = 0.004
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 11 METRGSRHTLMIRKVVAS-DFGNYSCEATNPMGKHRAYLELSGKPNP 56
G TL I +V + Y+C A N G + L + +
Sbjct: 62 STEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 108
>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM,
N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 102
Score = 33.1 bits (74), Expect = 0.004
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 11 METRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
S + V D G Y+C + G++ + +
Sbjct: 58 DRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIH 98
>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 33.0 bits (74), Expect = 0.004
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 11 METRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNP 56
E S L+ K + GNY+ A NP+G + +P P
Sbjct: 55 QEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFP 102
>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 89
Score = 32.6 bits (73), Expect = 0.004
Identities = 11/36 (30%), Positives = 13/36 (36%)
Query: 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
L IR V SD G Y C +N + L
Sbjct: 52 FNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 87
>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 32.2 bits (72), Expect = 0.006
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 11 METRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYL 48
+ +L I + +SD Y E+ N + +L
Sbjct: 53 VYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMKFFL 90
>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 31.4 bits (70), Expect = 0.014
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 9 RIMETRGSRHTLMIRKVVASDFGNYSCEATN 39
I E+ G++ TL I + +D Y C
Sbjct: 53 YIFESIGAKRTLTISQCSLADDAAYQCVVGG 83
>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car),
domain 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 31.5 bits (70), Expect = 0.018
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 12 ETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
+ + ++ + + SD G Y C+ G + L
Sbjct: 82 DLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLV 121
>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 97
Score = 30.6 bits (68), Expect = 0.026
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGK 43
++ V A D G+Y C ATN G
Sbjct: 62 DLVISNPVKAKDAGSYQCVATNARGT 87
>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 119
Score = 30.6 bits (68), Expect = 0.032
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKH 44
+++I + SD G ++C+ NP
Sbjct: 82 SIVIHNLDYSDNGTFTCDVKNPPDIV 107
>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 98
Score = 30.0 bits (67), Expect = 0.041
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKH 44
L I+ + D G Y+ + G
Sbjct: 61 DLKIKNLTRDDSGTYNVTVYSTNGTR 86
>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2
(ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 30.0 bits (66), Expect = 0.048
Identities = 7/48 (14%), Positives = 13/48 (27%)
Query: 4 ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
ET + + + T N+SC A + +
Sbjct: 49 ETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHK 96
>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 29.7 bits (65), Expect = 0.054
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 17 RHTLMIRKVVASDFG-NYSCEATNPMGKHRAYLEL 50
L I ++ + + ++C A N G AY++L
Sbjct: 69 ITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 103
>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 29.5 bits (65), Expect = 0.056
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 16 SRHTLMIRKVVASDFGNYSCEATN 39
L++R V D GNYSC
Sbjct: 58 MGRRLLLRSVQLHDSGNYSCYRAG 81
>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 29.2 bits (64), Expect = 0.073
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGK 43
L+I + D G Y C + +
Sbjct: 50 KNLLIFNLSEGDSGVYQCLSEERVKN 75
>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 29.2 bits (64), Expect = 0.081
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46
++ + ASD G YSCEA N G
Sbjct: 58 SYVLNPTTGELV--FDPLSASDTGEYSCEARNGYGTPMT 94
>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 105
Score = 29.2 bits (64), Expect = 0.085
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK 43
+ L I K ASD GNYSC AT+ +
Sbjct: 51 DGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDF 86
>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 97
Score = 29.0 bits (64), Expect = 0.091
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATN 39
RR + +G+ L+I+ + D Y CE +
Sbjct: 55 ADSRRSLWDQGN-FPLIIKNLKIEDSDTYICEVED 88
>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 97
Score = 28.7 bits (63), Expect = 0.11
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAY 47
S L+ + + D G Y+CE N +GK + +
Sbjct: 59 SGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKH 90
>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 28.7 bits (63), Expect = 0.12
Identities = 7/46 (15%), Positives = 12/46 (26%)
Query: 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
+ + + L D G+Y C N R +
Sbjct: 47 STEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAK 92
>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 28.0 bits (61), Expect = 0.22
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMG-----KHRAYLELS 51
+++I + SD G Y C +H A + LS
Sbjct: 66 SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLS 103
>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 28.1 bits (61), Expect = 0.24
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 10 IMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK 43
E S L V+ +D G+Y C A
Sbjct: 57 KEEKNISFFILHFEPVLPNDNGSYRCSANFQSNL 90
>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 27.3 bits (59), Expect = 0.28
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLE 49
+ +L I D G Y C+ YLE
Sbjct: 46 TNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLE 79
>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans)
[TaxId: 6239]}
Length = 93
Score = 27.2 bits (59), Expect = 0.32
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
++ +D GNY + N +G+ A E+
Sbjct: 58 TSIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha
subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 26.9 bits (58), Expect = 0.43
Identities = 6/38 (15%), Positives = 10/38 (26%)
Query: 8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR 45
++ H + I D G Y C +
Sbjct: 39 GEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYE 76
>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 97
Score = 27.0 bits (58), Expect = 0.46
Identities = 9/34 (26%), Positives = 11/34 (32%)
Query: 10 IMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK 43
++ TL I D G Y C T G
Sbjct: 52 VVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGT 85
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 27.1 bits (59), Expect = 0.50
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 16 SRHTLMIRKVVASDFGNYSCEATNPMG 42
+ L++ V GNY+C A+
Sbjct: 56 VKDRLIVMNVAEKHRGNYTCHASYTYL 82
>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 26.3 bits (56), Expect = 0.83
Identities = 6/39 (15%), Positives = 13/39 (33%)
Query: 13 TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
+ + V D G Y+C + G +++
Sbjct: 63 VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVK 101
>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion
molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 90
Score = 25.8 bits (55), Expect = 1.1
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 11 METRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
+++ R L +R S G C + + ++L
Sbjct: 48 VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQL 87
>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 111
Score = 25.8 bits (55), Expect = 1.4
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYL 48
+ ++ K SD Y C A N L
Sbjct: 65 LYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVL 96
>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32)
{Human (Homo sapiens), IIb [TaxId: 9606]}
Length = 88
Score = 25.3 bits (54), Expect = 1.5
Identities = 6/35 (17%), Positives = 10/35 (28%)
Query: 11 METRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR 45
+ S I + S G+Y C +
Sbjct: 42 KKFSRSDPNFSIPQANHSHSGDYHCTGNIGYTLYS 76
>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27
[TaxId: 9606]}
Length = 89
Score = 24.8 bits (53), Expect = 2.4
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 18 HTLMIRKVVASDFGNYSCEATN 39
H L++ G S +A N
Sbjct: 56 HILILHNCQLGMTGEVSFQAAN 77
>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 110
Score = 25.2 bits (54), Expect = 2.5
Identities = 6/34 (17%), Positives = 10/34 (29%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG 52
TL + + D G Y C + +
Sbjct: 70 TLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMN 103
>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32)
{Human (Homo sapiens), III [TaxId: 9606]}
Length = 84
Score = 24.9 bits (53), Expect = 2.5
Identities = 7/42 (16%), Positives = 10/42 (23%)
Query: 8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLE 49
+ I +D G Y C+ LE
Sbjct: 42 HNESLISSQASSYFIDAATVNDSGEYRCQTNLSTLSDPVQLE 83
>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,
CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 96
Score = 24.6 bits (52), Expect = 3.3
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 11 METRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKPN 55
M + L I + D G Y CE +NP+ R L++ P+
Sbjct: 49 MTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPS 96
>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable
domain, VL-kappa {Mouse (Mus musculus), cluster 1.1
[TaxId: 10090]}
Length = 113
Score = 24.6 bits (53), Expect = 3.5
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 7 ERRIMETRGSRHTLMIRKVVASDFGNYSC 35
+R G+ TL I +V A D G Y C
Sbjct: 66 DRFSGSGSGTDFTLKISRVEAEDLGIYYC 94
>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1,
ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 23.8 bits (50), Expect = 4.7
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
V G Y C A + G+ + ++
Sbjct: 47 PIGESVTVTRDLEGTYLCRARSTQGEVTREVTVN 80
>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor
tyro3, second domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 85
Score = 23.8 bits (50), Expect = 5.3
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 13 TRGSRHTLMIRKVVASDFGNYSCEATNPMG 42
+ ++ + +SCEA N G
Sbjct: 44 GGPAPSPSVLNVTGVTQSTMFSCEAHNLKG 73
>d1ky8a_ c.82.1.1 (A:) Non-phosphorylating
glyceraldehyde-3-phosphate dehydrogenase GapN {Archaeon
Thermoproteus tenax [TaxId: 2271]}
Length = 499
Score = 24.9 bits (53), Expect = 5.5
Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIF 59
+ V + G + +EL G +PAI
Sbjct: 230 ADDRVAAVSFTGSTEVGERVVKVGGVKQYVMELGGG-DPAIV 270
>d1urja_ e.58.1.1 (A:) Infected cell protein 8, ICP8 {Herpes simplex
virus 1 [TaxId: 10298]}
Length = 1122
Score = 24.4 bits (53), Expect = 8.0
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 3/51 (5%)
Query: 83 LEEFKIKYRKIPGNEPSPMSNQLTG-TNQYQNRRLVRKRFDRGNSTNGGLI 132
+E ++K R + + S Q+ K R + G L
Sbjct: 760 PKELRVKSRVLFAGASANASEAAKARVASLQSAYQ--KPDKRVDILLGPLG 808
>d1y12a1 b.157.1.1 (A:2-162) Hemolysin-corregulated protein 1, Hcp1
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 161
Score = 23.6 bits (51), Expect = 9.0
Identities = 2/25 (8%), Positives = 8/25 (32%)
Query: 69 NSYNITWMVSSYTPLEEFKIKYRKI 93
+S + E + + ++
Sbjct: 107 SSVSTGGSGGEDRLTENVTLNFAQV 131
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.394
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 562,487
Number of extensions: 25524
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 68
Length of query: 152
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 74
Effective length of database: 1,336,656
Effective search space: 98912544
Effective search space used: 98912544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.2 bits)