Query psy15984
Match_columns 68
No_of_seqs 104 out of 1070
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 18:01:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15984.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15984hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qfz_A TBC1 domain family memb 99.8 1.2E-19 4E-24 123.6 5.8 61 6-66 135-219 (345)
2 1fkm_A Protein (GYP1P), ORF YO 99.8 4.1E-19 1.4E-23 123.6 6.0 61 6-66 118-206 (396)
3 4hl4_A TBC1 domain family memb 99.7 4.5E-18 1.6E-22 113.8 4.1 60 5-65 117-177 (292)
4 3qye_A TBC1 domain family memb 99.7 7.1E-18 2.4E-22 114.1 5.0 60 5-65 136-197 (331)
5 3hzj_A Rabgap1L, RAB GTPase-ac 99.7 4E-18 1.4E-22 114.6 3.7 60 5-65 102-163 (310)
6 2qq8_A TBC1 domain family memb 99.7 5.7E-18 2E-22 115.3 4.3 60 5-65 141-202 (334)
7 3qwl_A TBC1 domain family memb 99.3 5.5E-13 1.9E-17 90.3 4.2 51 17-67 131-181 (294)
8 3c0u_A Uncharacterized protein 65.7 1 3.4E-05 28.7 -0.5 23 1-23 42-65 (183)
9 2ot9_A Hypothetical protein; Y 65.5 0.97 3.3E-05 28.7 -0.6 23 1-23 40-63 (180)
10 2g3w_A YAEQ protein, hypotheti 64.8 1 3.5E-05 28.6 -0.5 23 1-23 40-63 (182)
11 1erd_A Pheromone ER-2; NMR {Eu 50.8 3.5 0.00012 19.6 0.1 11 11-21 13-23 (40)
12 3tdu_C Cullin-1, CUL-1; E2:E3, 34.2 43 0.0015 17.9 2.9 26 42-67 32-57 (77)
13 3o2p_E Cell division control p 30.6 51 0.0017 18.1 2.9 26 42-67 44-69 (88)
14 1iuy_A Cullin-3 homologue; win 29.0 53 0.0018 18.2 2.8 26 42-67 47-72 (92)
15 2js3_A Uncharacterized protein 26.5 19 0.00066 20.1 0.6 12 16-27 17-28 (96)
No 1
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=99.79 E-value=1.2e-19 Score=123.57 Aligned_cols=61 Identities=28% Similarity=0.476 Sum_probs=54.2
Q ss_pred hhhhhcCCCCCcccchHHHHHHHHHHhcC------------------------chhHHHHHHHHHHhhhcCCCCCchhHH
Q psy15984 6 VTYVWEHLDVGYMQGMCDLVAPILVILDD------------------------ESLTYSCFCCLMDRMAANFPTTGGVMD 61 (68)
Q Consensus 6 ~~y~~~n~~igY~QGm~~l~a~ll~v~~~------------------------E~~aF~~f~~lm~~~~~~y~~~~~g~~ 61 (68)
.+|+.+||++|||||||+|++||++++.+ |++|||||+++|++++++|..+++|+.
T Consensus 135 ~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y~~~~~~i~ 214 (345)
T 2qfz_A 135 FIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYTFAQPGIQ 214 (345)
T ss_dssp HHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGSSTTCHHHH
T ss_pred HHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHHHHHHccccccccCcHHHH
Confidence 46777899999999999999999998742 899999999999999999999999987
Q ss_pred HHhhh
Q psy15984 62 NHFAN 66 (68)
Q Consensus 62 ~~~~~ 66 (68)
..+..
T Consensus 215 ~~~~~ 219 (345)
T 2qfz_A 215 MKVKM 219 (345)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76554
No 2
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=99.77 E-value=4.1e-19 Score=123.61 Aligned_cols=61 Identities=25% Similarity=0.433 Sum_probs=54.0
Q ss_pred hhhhhcCCCCCcccchHHHHHHHHHHhc------------------C----------chhHHHHHHHHHHhhhcCCCCCc
Q psy15984 6 VTYVWEHLDVGYMQGMCDLVAPILVILD------------------D----------ESLTYSCFCCLMDRMAANFPTTG 57 (68)
Q Consensus 6 ~~y~~~n~~igY~QGm~~l~a~ll~v~~------------------~----------E~~aF~~f~~lm~~~~~~y~~~~ 57 (68)
.+|+.+||++|||||||+|++||++++. + |++|||||+++|++++++|..++
T Consensus 118 ~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~~~ 197 (396)
T 1fkm_A 118 YLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIHGQ 197 (396)
T ss_dssp HHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSSTTC
T ss_pred HHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhhcH
Confidence 3577789999999999999999999862 1 89999999999999999999999
Q ss_pred hhHHHHhhh
Q psy15984 58 GVMDNHFAN 66 (68)
Q Consensus 58 ~g~~~~~~~ 66 (68)
+|+...+..
T Consensus 198 ~~i~~~~~~ 206 (396)
T 1fkm_A 198 PGILRQVKN 206 (396)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998877654
No 3
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=99.71 E-value=4.5e-18 Score=113.82 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=49.5
Q ss_pred hhhhhhcCCCCCcccchHHHHHHHHHHhcCchhHHHHHHHHHHh-hhcCCCCCchhHHHHhh
Q psy15984 5 KVTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDR-MAANFPTTGGVMDNHFA 65 (68)
Q Consensus 5 ~~~y~~~n~~igY~QGm~~l~a~ll~v~~~E~~aF~~f~~lm~~-~~~~y~~~~~g~~~~~~ 65 (68)
+.+|+++||++|||||||+|++||++++ +|++|||||+++|++ +++.|.++.+|+...+.
T Consensus 117 L~ay~~~~p~vgY~QGm~~iaa~lLl~~-~e~~aF~~l~~l~~~~l~~~~~~~~~~~~~~~~ 177 (292)
T 4hl4_A 117 ILLILERNPQLHYYQGYHDIVVTFLLVV-GERLATSLVEKLSTHHLRDFMDPTMDNTKHILN 177 (292)
T ss_dssp HHHHHHHCTTCCCCTTHHHHHHHHHHHH-CHHHHHHHHHHHHHTTTTGGGCSSSCTTTGGGG
T ss_pred HHHHHHHCCCCCeeccHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 3578889999999999999999999776 588999999999987 45677777667655443
No 4
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=99.71 E-value=7.1e-18 Score=114.09 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=52.5
Q ss_pred hhhhhhcCCCCCcccchHHHHHHHHHHhcCchhHHHHHHHHHHh--hhcCCCCCchhHHHHhh
Q psy15984 5 KVTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDR--MAANFPTTGGVMDNHFA 65 (68)
Q Consensus 5 ~~~y~~~n~~igY~QGm~~l~a~ll~v~~~E~~aF~~f~~lm~~--~~~~y~~~~~g~~~~~~ 65 (68)
+.+|+++||++|||||||+|++||++++ +|++|||||+.+|++ ++++|.++.+|+...+.
T Consensus 136 L~ay~~~~p~igY~QGm~~i~a~ll~~~-~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 197 (331)
T 3qye_A 136 LKAYSLLDQEVGYCQGLSFVAGILLLHM-SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMY 197 (331)
T ss_dssp HHHHHHHCTTTSSCTTHHHHHHHHHTTS-CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHH
T ss_pred HHHHHHHCCCccccccHHHHHHHHHHHh-hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHH
Confidence 3468889999999999999999999886 688999999999987 47899999999877654
No 5
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=99.71 E-value=4e-18 Score=114.59 Aligned_cols=60 Identities=20% Similarity=0.262 Sum_probs=52.0
Q ss_pred hhhhhhcCCCCCcccchHHHHHHHHHHhcCchhHHHHHHHHHHh--hhcCCCCCchhHHHHhh
Q psy15984 5 KVTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDR--MAANFPTTGGVMDNHFA 65 (68)
Q Consensus 5 ~~~y~~~n~~igY~QGm~~l~a~ll~v~~~E~~aF~~f~~lm~~--~~~~y~~~~~g~~~~~~ 65 (68)
+.+|+++||++|||||||+|++||+.++ +|++|||||+++|++ +++.|.++.+|+...+.
T Consensus 102 L~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (310)
T 3hzj_A 102 CKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFY 163 (310)
T ss_dssp HHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHHHHHHHhcccccccccccHHHHHHHHH
Confidence 3468889999999999999999999987 688999999999987 68889888888776543
No 6
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=99.71 E-value=5.7e-18 Score=115.31 Aligned_cols=60 Identities=32% Similarity=0.464 Sum_probs=51.2
Q ss_pred hhhhhhcCCCCCcccchHHHHHHHHHHhcCchhHHHHHHHHHHhh--hcCCCCCchhHHHHhh
Q psy15984 5 KVTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRM--AANFPTTGGVMDNHFA 65 (68)
Q Consensus 5 ~~~y~~~n~~igY~QGm~~l~a~ll~v~~~E~~aF~~f~~lm~~~--~~~y~~~~~g~~~~~~ 65 (68)
+.+|+++||++|||||||+|+|||++++ +|++|||||+++|++. .++|..+++++...+.
T Consensus 141 L~aya~~~p~vgY~QGm~~iaa~lLl~~-~E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 202 (334)
T 2qq8_A 141 LGAYTCYRPDVGYVQGMSFIAAVLILNL-DTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFA 202 (334)
T ss_dssp HHHHHHHCTTTCCCTTHHHHHHHHHHHS-CHHHHHHHHHHHHTSHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHhCCCCCcchhHHHHHHHHHhcC-CHHHHHHHHHHHHHhhhHHhccCCChHHHHHHHH
Confidence 3468889999999999999999999875 6889999999999876 4678888888876554
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=99.35 E-value=5.5e-13 Score=90.30 Aligned_cols=51 Identities=6% Similarity=0.101 Sum_probs=47.0
Q ss_pred cccchHHHHHHHHHHhcCchhHHHHHHHHHHhhhcCCCCCchhHHHHhhhc
Q psy15984 17 YMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFANM 67 (68)
Q Consensus 17 Y~QGm~~l~a~ll~v~~~E~~aF~~f~~lm~~~~~~y~~~~~g~~~~~~~l 67 (68)
++|||++|+++++.++++|+||||||+++|++++++|.++++|+++.+++|
T Consensus 131 ~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~l~~~f~~~~~gl~~~l~~L 181 (294)
T 3qwl_A 131 DDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQLNTKYRDSLPQLPKAFEQY 181 (294)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTTTTTTGGGHHHHHHHH
T ss_pred chhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 459999999999999999999999999999999999999999998887654
No 8
>3c0u_A Uncharacterized protein YAEQ; PSI-2, protein structure initiative, center for structural genomics, MCSG, structural genomics, function; 2.70A {Escherichia coli}
Probab=65.71 E-value=1 Score=28.70 Aligned_cols=23 Identities=17% Similarity=0.456 Sum_probs=16.6
Q ss_pred Ccchhhhhhhc-CCCCCcccchHH
Q psy15984 1 MSLSKVTYVWE-HLDVGYMQGMCD 23 (68)
Q Consensus 1 ~~~~~~~y~~~-n~~igY~QGm~~ 23 (68)
||+++.||+.. +.++.+..|+++
T Consensus 42 mM~RlLAfal~a~e~L~FtkGLs~ 65 (183)
T 3c0u_A 42 MMLRLLAWLKYADERLQFTRGLCA 65 (183)
T ss_dssp HHHHHHHHHHTCCTTEEECC----
T ss_pred HHHHHHHHHhcccccccccCCCCC
Confidence 57899999985 889999999776
No 9
>2ot9_A Hypothetical protein; YAEQ protein, PSI-2, protein structure initiative, MCSG, structural genomics, midwest center for S genomics; HET: SRT; 1.97A {Pseudomonas syringae PV} SCOP: c.52.1.33
Probab=65.46 E-value=0.97 Score=28.70 Aligned_cols=23 Identities=17% Similarity=0.491 Sum_probs=19.8
Q ss_pred Ccchhhhhhhc-CCCCCcccchHH
Q psy15984 1 MSLSKVTYVWE-HLDVGYMQGMCD 23 (68)
Q Consensus 1 ~~~~~~~y~~~-n~~igY~QGm~~ 23 (68)
||+++.||+.. +.++.+..|+++
T Consensus 40 mM~RlLAfal~a~e~L~FtkGLs~ 63 (180)
T 2ot9_A 40 MTVRLLAYAFWYNEQLAFGRGLSD 63 (180)
T ss_dssp HHHHHHHHHHTCCTTEEECCGGGC
T ss_pred HHHHHHHHHhcccccccccCCCCC
Confidence 57899999985 889999999876
No 10
>2g3w_A YAEQ protein, hypothetical protein XAC2396; xanthomonas axonopodis PV citri, unknown funct; HET: MSE; 1.90A {Xanthomonas axonopodis PV} SCOP: c.52.1.33
Probab=64.85 E-value=1 Score=28.62 Aligned_cols=23 Identities=4% Similarity=0.231 Sum_probs=19.8
Q ss_pred Ccchhhhhhhc-CCCCCcccchHH
Q psy15984 1 MSLSKVTYVWE-HLDVGYMQGMCD 23 (68)
Q Consensus 1 ~~~~~~~y~~~-n~~igY~QGm~~ 23 (68)
||+++.||+.. +.++.+..|+++
T Consensus 40 mM~RlLAfal~a~e~L~FtkGLs~ 63 (182)
T 2g3w_A 40 LMVRLLAFALFADDRLEFGRGLSN 63 (182)
T ss_dssp HHHHHHHHHHTCCSSCEECCTTSC
T ss_pred HHHHHHHHHhcccccccccCCCCC
Confidence 57899999985 889999999876
No 11
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=50.83 E-value=3.5 Score=19.55 Aligned_cols=11 Identities=55% Similarity=0.778 Sum_probs=8.4
Q ss_pred cCCCCCcccch
Q psy15984 11 EHLDVGYMQGM 21 (68)
Q Consensus 11 ~n~~igY~QGm 21 (68)
-|.-.|||||-
T Consensus 13 ehtmcgycqgp 23 (40)
T 1erd_A 13 EHTMCGYCQGP 23 (40)
T ss_dssp CGGGGGGSCHH
T ss_pred cccccccccCC
Confidence 46678999983
No 12
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=34.18 E-value=43 Score=17.95 Aligned_cols=26 Identities=8% Similarity=0.212 Sum_probs=19.7
Q ss_pred HHHHHHhhhcCCCCCchhHHHHhhhc
Q psy15984 42 FCCLMDRMAANFPTTGGVMDNHFANM 67 (68)
Q Consensus 42 f~~lm~~~~~~y~~~~~g~~~~~~~l 67 (68)
+..+.+.+...|.++.+-++.+++.|
T Consensus 32 v~ev~~ql~~rF~p~~~~IKk~IE~L 57 (77)
T 3tdu_C 32 LGEVLTQLSSRFKPRVPVIKKCIDIL 57 (77)
T ss_dssp HHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 34455667788999888899888865
No 13
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=30.63 E-value=51 Score=18.12 Aligned_cols=26 Identities=4% Similarity=0.091 Sum_probs=19.8
Q ss_pred HHHHHHhhhcCCCCCchhHHHHhhhc
Q psy15984 42 FCCLMDRMAANFPTTGGVMDNHFANM 67 (68)
Q Consensus 42 f~~lm~~~~~~y~~~~~g~~~~~~~l 67 (68)
+.-+.+.+...|.++.+-++++++.|
T Consensus 44 v~ev~~ql~~rF~p~~~~IKk~IE~L 69 (88)
T 3o2p_E 44 VNECIAQSHQRFNAKVSMVKRAIDSL 69 (88)
T ss_dssp HHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 34455667788999888899888765
No 14
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=29.04 E-value=53 Score=18.15 Aligned_cols=26 Identities=12% Similarity=0.254 Sum_probs=20.0
Q ss_pred HHHHHHhhhcCCCCCchhHHHHhhhc
Q psy15984 42 FCCLMDRMAANFPTTGGVMDNHFANM 67 (68)
Q Consensus 42 f~~lm~~~~~~y~~~~~g~~~~~~~l 67 (68)
+.-+.+.+...|.++-+.++.+++.|
T Consensus 47 v~ev~~ql~~rF~p~~~~IKk~IE~L 72 (92)
T 1iuy_A 47 VAEVTQQLKARFLPSPVVIKKRIEGL 72 (92)
T ss_dssp HHHHHHHTCSSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 34556667788999888899988865
No 15
>2js3_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural G PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris}
Probab=26.48 E-value=19 Score=20.11 Aligned_cols=12 Identities=50% Similarity=0.653 Sum_probs=9.4
Q ss_pred CcccchHHHHHH
Q psy15984 16 GYMQGMCDLVAP 27 (68)
Q Consensus 16 gY~QGm~~l~a~ 27 (68)
=|-|||-++++-
T Consensus 17 lyfqgM~~~a~E 28 (96)
T 2js3_A 17 LYFQGMTDTAAE 28 (96)
T ss_dssp BTTBSTTTHHHH
T ss_pred eeeccccccCHH
Confidence 399999987654
Done!