RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15984
(68 letters)
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator,
structural genomics, structural genomics consortium,
SGC, hydrolase activator; 2.10A {Homo sapiens} PDB:
3dzx_A
Length = 345
Score = 53.0 bits (127), Expect = 2e-10
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 24/71 (33%)
Query: 7 TYVWEHLDVGYMQGMCDLVAPILVIL------------------------DDESLTYSCF 42
+ H GY+QG+ DLV P V+ + E+ TY C
Sbjct: 136 IWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCM 195
Query: 43 CCLMDRMAANF 53
L+D + N+
Sbjct: 196 SKLLDGIQDNY 206
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular
trafficking, endocytosis, hydrolase, GTPase activation;
1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1
PDB: 2g77_A*
Length = 396
Score = 50.0 bits (119), Expect = 3e-09
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 28/75 (37%)
Query: 7 TYVWEHLDVGYMQGMCDLVAPILVIL----------------------------DDESLT 38
+ H GY+QG+ DLV P D E+ T
Sbjct: 119 LWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADT 178
Query: 39 YSCFCCLMDRMAANF 53
+ C L++++ N+
Sbjct: 179 FWCLTKLLEQITDNY 193
>2qq8_A TBC1 domain family member 14; structural genomics consortium,
RAB-GAP, SGC, GTPase activation, hydrolase activator;
2.00A {Homo sapiens}
Length = 334
Score = 37.1 bits (86), Expect = 1e-04
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 8 YVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDR 48
Y DVGY+QGM + A +++ LD + F L+++
Sbjct: 144 YTCYRPDVGYVQGMSFIAAVLILNLDTAD-AFIAFSNLLNK 183
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics
consortium, SGC, alternative splicing, GTPase
activation, phosphoprotein; 2.30A {Homo sapiens}
Length = 310
Score = 35.1 bits (81), Expect = 5e-04
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 8 YVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDR 48
Y D+GY QG L A +L+ + +E + +M
Sbjct: 105 YSVYDEDIGYCQGQSFLAAVLLLHMPEEQ-AFCVLVKIMYD 144
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase
activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Length = 331
Score = 35.1 bits (81), Expect = 5e-04
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 8 YVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRM 49
Y +VGY QG+ + +L+ + +E + LM M
Sbjct: 139 YSLLDQEVGYCQGLSFVAGILLLHMSEEE-AFKMLKFLMFDM 179
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural
genomics consortium, TBC D SGC, hydrolase activator;
1.90A {Homo sapiens}
Length = 294
Score = 30.0 bits (67), Expect = 0.034
Identities = 3/49 (6%), Positives = 15/49 (30%)
Query: 5 KVTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANF 53
K+ + + + +++D Y ++++ +
Sbjct: 119 KLPRSPSFPLEPDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQLNTKY 167
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 26.7 bits (60), Expect = 0.47
Identities = 6/33 (18%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 10 WEHLDVGYMQGMCDLVAP----ILVILDDESLT 38
W++++ + +C+L+ ++ +LD+ L
Sbjct: 433 WKNIEYFNNKPICELIEKKPIGLISLLDEACLI 465
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 25.8 bits (57), Expect = 1.1
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 7/33 (21%)
Query: 10 WEHLDVGYM--QGMCDLV-AP--ILVILDDESL 37
W +D + Q +L+ A +L +LD+E
Sbjct: 484 WTLID--FYDNQPCINLIEAKMGVLDLLDEECK 514
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 25.4 bits (56), Expect = 1.5
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 7/35 (20%)
Query: 10 WEHLDVGY-MQGMCDLVAP------ILVILDDESL 37
W LD G +Q DL+ +L +LD+E
Sbjct: 480 WTFLDFGLDLQPCIDLIERPANPPGLLALLDEECW 514
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 24.9 bits (55), Expect = 2.4
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 8/34 (23%)
Query: 10 WEHLDVGYM--QGMCDLVAP----ILVILDDESL 37
+ Y+ Q DL+ IL ILD+E+
Sbjct: 499 VNEVH--YVDNQDCIDLIEARLVGILDILDEENR 530
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 24.1 bits (53), Expect = 3.6
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 7/33 (21%)
Query: 10 WEHLDVGYM--QGMCDLV-AP--ILVILDDESL 37
W +D + Q +L+ A +L +LD+E
Sbjct: 484 WTLID--FYDNQPCINLIEAKMGVLDLLDEECK 514
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 24.2 bits (53), Expect = 4.1
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 10 WEHLDVGY-MQGMCDLV-AP--ILVILDDESL 37
WE +D G +Q DL+ P IL IL++E +
Sbjct: 507 WEFIDFGMDLQMCIDLIEKPMGILSILEEECM 538
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 24.1 bits (53), Expect = 4.7
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 10 WEHLDVGY-MQGMCDLVAP-----ILVILDDESLT 38
W +D G Q DL+ IL +LD++S+
Sbjct: 501 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVF 535
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein;
1.90A {Staphylococcus aureus}
Length = 693
Score = 23.2 bits (51), Expect = 8.0
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 41 CFCCLMDRMAANF 53
F MD++ ANF
Sbjct: 132 VFVNKMDKLGANF 144
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational
GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A
2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A*
1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A*
3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Length = 691
Score = 23.2 bits (51), Expect = 8.7
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 41 CFCCLMDRMAANF 53
F MD+ A+
Sbjct: 134 AFANKMDKTGADL 146
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.139 0.457
Gapped
Lambda K H
0.267 0.0651 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,033,509
Number of extensions: 44214
Number of successful extensions: 182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 18
Length of query: 68
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 30
Effective length of database: 5,640,795
Effective search space: 169223850
Effective search space used: 169223850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.6 bits)