RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15984
         (68 letters)



>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 194

 Score = 40.6 bits (94), Expect = 2e-06
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 28/75 (37%)

Query: 7   TYVWEHLDVGYMQGMCDLVAPILVIL----------------------------DDESLT 38
            +   H   GY+QG+ DLV P                                 D E+ T
Sbjct: 118 LWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADT 177

Query: 39  YSCFCCLMDRMAANF 53
           + C   L++++  N+
Sbjct: 178 FWCLTKLLEQITDNY 192


>d2rh7a1 d.22.1.1 (A:7-226) Green fluorescent protein, GFP {Renilla
           reniformis [TaxId: 6136]}
          Length = 220

 Score = 22.0 bits (47), Expect = 9.6
 Identities = 9/29 (31%), Positives = 11/29 (37%)

Query: 34  DESLTYSCFCCLMDRMAANFPTTGGVMDN 62
           D SL    F   +D  A +    G VM  
Sbjct: 104 DISLEDGKFIVNVDFKAKDLRRMGPVMQQ 132


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.139    0.457 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 254,939
Number of extensions: 8438
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 2
Length of query: 68
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 31
Effective length of database: 1,899,586
Effective search space: 58887166
Effective search space used: 58887166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.0 bits)