BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15988
(718 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HKR|A Chain A, Calcium Release-Activated Calcium (Crac) Channel Orai
pdb|4HKR|B Chain B, Calcium Release-Activated Calcium (Crac) Channel Orai
Length = 214
Score = 191 bits (486), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 101/195 (51%), Positives = 138/195 (70%)
Query: 275 LVWRRLHMSRAKLKATATTSELLSGFAMVAMVELQINEPTNVPEWLFIMFAVCTTVLVAV 334
L WR+L +SRAKLKA++ TS LLSGFAMVAMVE+Q++ TNVP + I FA+CTT+LVAV
Sbjct: 14 LSWRKLQLSRAKLKASSKTSALLSGFAMVAMVEVQLDHDTNVPPGMLIAFAICTTLLVAV 73
Query: 335 HIFALMISTYLLPNIEAISKLQSTKLVSESPHERMRGFVELAWAFSTVLGLFLFLVEVAI 394
H+ ALMIST +LPNIE +S L S LV ESPHER+ ++E AWAFST+LGL LFL+E+AI
Sbjct: 74 HMLALMISTCILPNIETVSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAI 133
Query: 395 LCWVKFWDYSLRXXXXXXXXXXXXXXXXXXXXXHFYHNVVKYKCKTSISDMKELEDIKKK 454
LCWVKF+D S R HFY ++V +K + ++S ++ELE +K++
Sbjct: 134 LCWVKFYDLSRRAAWSATVVLIPVMIIFMAFAIHFYRSLVSHKYEVTVSGIRELEMLKEQ 193
Query: 455 LDAGHVLYKNHSRRD 469
++ H+ + N+ R +
Sbjct: 194 MEQDHLEHHNNIRNN 208
Score = 165 bits (418), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 99/234 (42%), Positives = 133/234 (56%), Gaps = 48/234 (20%)
Query: 484 LVWRRLHMSRAKLKATATTSELLSGFAMVAMVELQINEPTNVPEWLFIMFAVCTTVLVAV 543
L WR+L +SRAKLKA++ TS LLSGFAMV
Sbjct: 14 LSWRKLQLSRAKLKASSKTSALLSGFAMV------------------------------- 42
Query: 544 HIFALMISTYLLPGNDVAMVELQINEPTNVPEWLFIMFAVCTTVLVAVHIFALMISTYLL 603
AMVE+Q++ TNVP + I FA+CTT+LVAVH+ ALMIST +L
Sbjct: 43 -----------------AMVEVQLDHDTNVPPGMLIAFAICTTLLVAVHMLALMISTCIL 85
Query: 604 PNIEAISKLQSTKLVSESPHERMRGFVELAWAFSTVLGLFLFLVEVAILCWVKFWDYSLR 663
PNIE +S L S LV ESPHER+ ++E AWAFST+LGL LFL+E+AILCWVKF+D S R
Sbjct: 86 PNIETVSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAILCWVKFYDLSRR 145
Query: 664 XXXXXXXXXXXXXXXXXXXXXHFYHNVVKYKCKTSISDMKELEDIKKKLDAGHV 717
HFY ++V +K + ++S ++ELE +K++++ H+
Sbjct: 146 AAWSATVVLIPVMIIFMAFAIHFYRSLVSHKYEVTVSGIRELEMLKEQMEQDHL 199
>pdb|4HKS|A Chain A, Calcium Release-Activated Calcium (Crac) Channel Orai,
K163w Mutant
pdb|4HKS|B Chain B, Calcium Release-Activated Calcium (Crac) Channel Orai,
K163w Mutant
Length = 214
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/195 (51%), Positives = 138/195 (70%)
Query: 275 LVWRRLHMSRAKLKATATTSELLSGFAMVAMVELQINEPTNVPEWLFIMFAVCTTVLVAV 334
L WR+L +SRAKLKA++ TS LLSGFAMVAMVE+Q++ TNVP + I FA+CTT+LVAV
Sbjct: 14 LSWRKLQLSRAKLKASSWTSALLSGFAMVAMVEVQLDHDTNVPPGMLIAFAICTTLLVAV 73
Query: 335 HIFALMISTYLLPNIEAISKLQSTKLVSESPHERMRGFVELAWAFSTVLGLFLFLVEVAI 394
H+ ALMIST +LPNIE +S L S LV ESPHER+ ++E AWAFST+LGL LFL+E+AI
Sbjct: 74 HMLALMISTCILPNIETVSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAI 133
Query: 395 LCWVKFWDYSLRXXXXXXXXXXXXXXXXXXXXXHFYHNVVKYKCKTSISDMKELEDIKKK 454
LCWVKF+D S R HFY ++V +K + ++S ++ELE +K++
Sbjct: 134 LCWVKFYDLSRRAAWSATVVLIPVMIIFMAFAIHFYRSLVSHKYEVTVSGIRELEMLKEQ 193
Query: 455 LDAGHVLYKNHSRRD 469
++ H+ + N+ R +
Sbjct: 194 MEQDHLEHHNNIRNN 208
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 99/234 (42%), Positives = 133/234 (56%), Gaps = 48/234 (20%)
Query: 484 LVWRRLHMSRAKLKATATTSELLSGFAMVAMVELQINEPTNVPEWLFIMFAVCTTVLVAV 543
L WR+L +SRAKLKA++ TS LLSGFAMV
Sbjct: 14 LSWRKLQLSRAKLKASSWTSALLSGFAMV------------------------------- 42
Query: 544 HIFALMISTYLLPGNDVAMVELQINEPTNVPEWLFIMFAVCTTVLVAVHIFALMISTYLL 603
AMVE+Q++ TNVP + I FA+CTT+LVAVH+ ALMIST +L
Sbjct: 43 -----------------AMVEVQLDHDTNVPPGMLIAFAICTTLLVAVHMLALMISTCIL 85
Query: 604 PNIEAISKLQSTKLVSESPHERMRGFVELAWAFSTVLGLFLFLVEVAILCWVKFWDYSLR 663
PNIE +S L S LV ESPHER+ ++E AWAFST+LGL LFL+E+AILCWVKF+D S R
Sbjct: 86 PNIETVSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAILCWVKFYDLSRR 145
Query: 664 XXXXXXXXXXXXXXXXXXXXXHFYHNVVKYKCKTSISDMKELEDIKKKLDAGHV 717
HFY ++V +K + ++S ++ELE +K++++ H+
Sbjct: 146 AAWSATVVLIPVMIIFMAFAIHFYRSLVSHKYEVTVSGIRELEMLKEQMEQDHL 199
>pdb|1Q5N|A Chain A, Crystal Structure Of Beta-Carboxy-Cis,Cis-Muconate
Cycloisomerase (Cmle) From Acinetobacter Calcoaceticus
Sp. Adp1
Length = 454
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 431 HNVVKYKCKTSISDMKELEDIKKKLD 456
H+VV+ CKT++++ K L+DI ++D
Sbjct: 389 HHVVEAACKTAVAEQKHLKDIISQVD 414
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 688 HNVVKYKCKTSISDMKELEDIKKKLD 713
H+VV+ CKT++++ K L+DI ++D
Sbjct: 389 HHVVEAACKTAVAEQKHLKDIISQVD 414
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,617,163
Number of Sequences: 62578
Number of extensions: 585657
Number of successful extensions: 1323
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1310
Number of HSP's gapped (non-prelim): 10
length of query: 718
length of database: 14,973,337
effective HSP length: 106
effective length of query: 612
effective length of database: 8,340,069
effective search space: 5104122228
effective search space used: 5104122228
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)