Query psy15988
Match_columns 718
No_of_seqs 95 out of 97
Neff 2.2
Searched_HMMs 46136
Date Fri Aug 16 18:05:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15988.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15988hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4298|consensus 100.0 2.2E-86 4.7E-91 640.2 17.3 221 223-456 9-231 (245)
2 KOG4298|consensus 100.0 1.9E-80 4.2E-85 598.9 16.4 207 459-713 23-231 (245)
3 PF07856 Orai-1: Mediator of C 100.0 1.4E-61 3E-66 456.4 14.2 170 272-441 5-175 (175)
4 PF07856 Orai-1: Mediator of C 100.0 1.2E-58 2.5E-63 436.6 16.3 172 479-698 3-175 (175)
5 COG1295 Rbn Ribonuclease BN fa 76.6 29 0.00063 35.9 11.1 90 491-592 24-116 (303)
6 PF10337 DUF2422: Protein of u 73.4 28 0.0006 37.6 10.4 145 485-661 5-160 (459)
7 KOG4721|consensus 73.1 18 0.00038 42.7 9.2 55 39-97 469-523 (904)
8 PRK05585 yajC preprotein trans 63.5 11 0.00023 34.6 4.2 41 669-717 18-58 (106)
9 PF05462 Dicty_CAR: Slime mold 61.5 92 0.002 32.9 11.1 155 498-685 15-174 (303)
10 PF02366 PMT: Dolichyl-phospha 60.1 46 0.001 32.3 8.1 24 407-430 219-242 (245)
11 PRK05886 yajC preprotein trans 57.3 16 0.00035 34.0 4.3 40 669-716 4-43 (109)
12 TIGR00739 yajC preprotein tran 56.8 14 0.00031 32.4 3.7 40 670-717 4-43 (84)
13 PF11139 DUF2910: Protein of u 53.9 50 0.0011 32.1 7.2 54 379-432 32-89 (214)
14 COG1862 YajC Preprotein transl 52.6 25 0.00055 32.2 4.6 40 669-716 9-48 (97)
15 PRK06531 yajC preprotein trans 46.3 34 0.00074 32.1 4.6 36 676-716 6-41 (113)
16 PF14752 RBP_receptor: Retinol 45.8 5.7E+02 0.012 30.2 15.4 53 378-430 127-181 (617)
17 PRK15033 tricarballylate utili 42.3 1.4E+02 0.0031 33.2 9.2 66 625-691 99-190 (389)
18 COG5473 Predicted integral mem 41.0 1.7E+02 0.0037 31.7 9.2 167 502-693 95-282 (290)
19 PRK10772 cell division protein 40.2 34 0.00074 31.9 3.6 50 421-505 38-87 (108)
20 KOG3359|consensus 39.8 36 0.00078 40.3 4.5 25 405-429 256-280 (723)
21 PRK04214 rbn ribonuclease BN/u 39.6 2.6E+02 0.0056 30.3 10.5 162 495-686 28-198 (412)
22 PF10943 DUF2632: Protein of u 39.6 95 0.002 31.5 6.7 63 309-398 23-85 (233)
23 PRK10755 sensor protein BasS/P 38.9 2E+02 0.0043 28.7 8.9 19 637-655 9-27 (356)
24 PF04156 IncA: IncA protein; 38.5 1.6E+02 0.0034 28.0 7.8 18 635-652 9-26 (191)
25 PF01554 MatE: MatE; InterPro 37.7 1.6E+02 0.0035 25.6 7.2 67 578-652 28-94 (162)
26 PF05624 LSR: Lipolysis stimul 37.6 12 0.00027 31.1 0.3 25 377-402 2-28 (49)
27 PF07332 DUF1469: Protein of u 37.5 1.4E+02 0.0031 26.3 6.9 12 692-703 101-112 (121)
28 PF07332 DUF1469: Protein of u 37.2 83 0.0018 27.8 5.4 40 405-445 72-111 (121)
29 PF09972 DUF2207: Predicted me 35.0 1.3E+02 0.0027 31.5 7.1 38 675-712 436-473 (511)
30 PHA03163 hypothetical protein; 34.6 58 0.0013 30.2 4.0 22 333-354 6-27 (92)
31 PF01618 MotA_ExbB: MotA/TolQ/ 34.6 2.1E+02 0.0044 26.4 7.7 16 636-651 71-86 (139)
32 PF06667 PspB: Phage shock pro 33.3 75 0.0016 28.1 4.4 22 670-691 4-30 (75)
33 PRK09458 pspB phage shock prot 33.2 58 0.0013 29.1 3.7 15 413-427 4-18 (75)
34 PF10225 DUF2215: Uncharacteri 31.1 62 0.0014 33.2 4.1 26 636-661 15-40 (249)
35 TIGR00727 ISP4_OPT small oligo 31.0 65 0.0014 37.8 4.7 57 618-678 379-443 (681)
36 PF02699 YajC: Preprotein tran 30.1 51 0.0011 28.7 2.8 38 671-716 4-41 (82)
37 PF06305 DUF1049: Protein of u 29.7 2.1E+02 0.0045 23.0 6.1 14 695-708 50-63 (68)
38 TIGR00797 matE putative efflux 27.8 4.8E+02 0.01 25.6 9.3 60 579-646 29-88 (342)
39 PF09815 XK-related: XK-relate 27.4 88 0.0019 32.6 4.5 53 635-688 2-58 (332)
40 PF04791 LMBR1: LMBR1-like mem 27.0 7.4E+02 0.016 26.7 11.3 72 537-610 32-103 (471)
41 PF04156 IncA: IncA protein; 26.2 1.7E+02 0.0036 27.8 5.7 48 379-428 10-58 (191)
42 KOG3359|consensus 25.9 75 0.0016 37.8 4.1 25 663-687 257-281 (723)
43 PF12606 RELT: Tumour necrosis 24.9 41 0.0009 27.9 1.3 38 669-706 3-40 (50)
44 PF11241 DUF3043: Protein of u 24.8 1.8E+02 0.004 29.2 5.9 68 617-689 57-125 (170)
45 KOG1962|consensus 24.7 1.6E+02 0.0034 30.7 5.6 74 319-392 30-112 (216)
46 PF00001 7tm_1: 7 transmembran 24.7 1.7E+02 0.0036 26.1 5.2 73 623-696 98-181 (257)
47 KOG4220|consensus 24.5 1.9E+02 0.0041 33.3 6.6 74 630-712 151-234 (503)
48 COG3402 Uncharacterized conser 23.1 1.2E+02 0.0025 30.6 4.2 81 620-702 3-86 (161)
49 KOG3722|consensus 23.0 73 0.0016 36.3 3.1 43 310-352 337-381 (538)
50 PF12270 Cyt_c_ox_IV: Cytochro 23.0 4.6E+02 0.0099 25.7 8.1 43 328-370 38-91 (137)
51 PHA03235 DNA packaging protein 22.7 9.2E+02 0.02 26.2 11.1 23 623-645 145-167 (409)
52 COG1862 YajC Preprotein transl 21.5 89 0.0019 28.7 2.9 39 412-458 9-47 (97)
53 PF12045 DUF3528: Protein of u 21.4 58 0.0013 32.1 1.8 30 109-138 6-36 (143)
54 TIGR01433 CyoA cytochrome o ub 21.2 2.3E+02 0.005 28.8 6.0 30 629-658 27-56 (226)
55 COG4615 PvdE ABC-type sideroph 21.1 3.6E+02 0.0078 31.3 7.9 142 540-698 18-177 (546)
56 PF06667 PspB: Phage shock pro 21.1 1.1E+02 0.0024 27.1 3.3 15 413-427 4-18 (75)
57 KOG0307|consensus 21.0 5.4E+02 0.012 32.3 9.8 46 154-199 795-842 (1049)
58 PRK05886 yajC preprotein trans 20.4 1.1E+02 0.0023 28.8 3.2 39 412-458 4-42 (109)
59 cd03499 SQR_TypeC_SdhC Succina 20.1 2.1E+02 0.0046 25.5 4.9 66 363-430 3-78 (117)
No 1
>KOG4298|consensus
Probab=100.00 E-value=2.2e-86 Score=640.16 Aligned_cols=221 Identities=50% Similarity=0.791 Sum_probs=211.9
Q ss_pred CCCCCCCCCCCCCCccccccCCCCCCccccccccCcCccCCCCCCCCcCccchhhhhhhhhHHHHHhhhhhhhhhhhhhh
Q psy15988 223 SPLPCHQCQHSPPTWSPYILPMNTDHHPRLYKNHSRRDLGHHYEELPEDSEGLVWRRLHMSRAKLKATATTSELLSGFAM 302 (718)
Q Consensus 223 ~p~~~~~~~~~~~~~~sYdvk~~kqw~~r~y~~~rdeDL~hr~qekqEd~~~lsWRrl~LsRaKLKAsSrtSALLSGFAM 302 (718)
.|+|---|++++..++.| ++|++++| ++|.|++||. .+++|||++|||||||||+||||||||||||
T Consensus 9 ~~~~~~~~~~p~~~g~~~-----r~~v~~~~--~~~~~~~~hs------~~~LSwrklyLSRAkLKASSrTSALLsGFAM 75 (245)
T KOG4298|consen 9 YPLPQFFLQPPSTAGGGS-----RNGVGKKA--GDDVDLNHHS------EQALSWRKLYLSRAKLKASSRTSALLSGFAM 75 (245)
T ss_pred CCCccccCCCccccCCCC-----CCccccch--hhhccccccc------hhHHHHHHHHHhHHHhhccchhHHHHhhhhh
Confidence 456667789999999988 99998766 5788999998 6999999999999999999999999999999
Q ss_pred eeeeeeeecCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHhhcccchhhhhcccccccccCCchhhhhhHHHHHHHHHHH
Q psy15988 303 VAMVELQINEPTNVPEWLFIMFAVCTTVLVAVHIFALMISTYLLPNIEAISKLQSTKLVSESPHERMRGFVELAWAFSTV 382 (718)
Q Consensus 303 vAMVEiQL~~~t~~P~~LlI~favcTtllvaVhl~aLMISTcILPnIeav~nvh~ls~v~eSPHerm~~~iE~aW~FST~ 382 (718)
|||||||++.+|++|++|+|+||+|||+||+|||||||||||||||||++||+||++.++||||||||+|||+||+|||+
T Consensus 76 VamVEvQld~~~~~P~~lLIaf~~cTtlLVaVHllALmiSTCILPniEav~n~hnln~v~eSPHerlh~yIelaW~FST~ 155 (245)
T KOG4298|consen 76 VAMVEVQLDQDTNYPPPLLIAFSACTTLLVAVHLLALMISTCILPNIEAVSNLHNLNSVQESPHERLHFYIELAWAFSTV 155 (245)
T ss_pred heeeeEeecccCCCCCceeehHHHHHHHHHHHHHHHHHHHhcccccHHHhcccccccccccChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhheeeccchh-HHHHHhhhhhhhhhhhhhhhhhhhhhcccccccccchhhhHHHHH-HHHhhh
Q psy15988 383 LGLFLFLVEVAILCWVKFWDYSL-RAAIAATIIVIPVLIIFVVFVVHFYHNVVKYKCKTSISDMKELED-IKKKLD 456 (718)
Q Consensus 383 lGl~LFLvEIaLL~WVKF~~~~~-~AA~ast~iliPv~ivFv~Fa~HFYrsLv~hK~e~~~~~i~eLe~-~~~qLD 456 (718)
+|++|||+||+++|||||++++. +|||++|+|||||++||+|||+|||||||+||+|++.++++||++ ++.|+|
T Consensus 156 iGllLFL~Ei~llcwvKF~~v~~P~Aa~~st~ilvPvgliFvvFa~hfyrslVsHk~~r~~~~i~el~~fl~~q~~ 231 (245)
T KOG4298|consen 156 IGLLLFLAEIVLLCWVKFLPVGYPTAAYISTAILVPVGLIFVVFAIHFYRSLVSHKTERFKHEIDELKQFLDVQLD 231 (245)
T ss_pred HHHHHHHHHHHHHheeeeecCCCchhhHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999997 699999999999999999999999999999999999999999998 677776
No 2
>KOG4298|consensus
Probab=100.00 E-value=1.9e-80 Score=598.89 Aligned_cols=207 Identities=50% Similarity=0.812 Sum_probs=198.2
Q ss_pred CcccccccccccccccccCcCCcccchhHHhhhhHHHHHhhhhhhhhhhccceeeeeeeeecCCCCCChhHHHHhhhhhh
Q psy15988 459 HVLYKNHSRRDLGHHFEELPEDSEGLVWRRLHMSRAKLKATATTSELLSGFAMVAMVELQINEPTNVPEWLFIMFAVCTT 538 (718)
Q Consensus 459 HVlY~~w~drdll~~~~~~qe~s~~lsWRrl~LSRaKLKAsSrtSALLSGFAMVAmVEiql~~~t~~P~~l~iafAv~tt 538 (718)
...||+|+.+++++.+.++.++.++++||++|||||||||+|||||||||||||||||+|++.++++|
T Consensus 23 g~~~r~~v~~~~~~~~~~~~hs~~~LSwrklyLSRAkLKASSrTSALLsGFAMVamVEvQld~~~~~P------------ 90 (245)
T KOG4298|consen 23 GGGSRNGVGKKAGDDVDLNHHSEQALSWRKLYLSRAKLKASSRTSALLSGFAMVAMVEVQLDQDTNYP------------ 90 (245)
T ss_pred CCCCCCccccchhhhccccccchhHHHHHHHHHhHHHhhccchhHHHHhhhhhheeeeEeecccCCCC------------
Confidence 35799999999999999999999999999999999999999999999999999999999998877766
Q ss_pred hhhhHHHHHHHHhhccCCCCchhhhhhhcCCCCCCcchhhHhhhhhhHHHHHHHHHHHHHHhhcchhhhhhhcccccCCC
Q psy15988 539 VLVAVHIFALMISTYLLPGNDVAMVELQINEPTNVPEWLFIMFAVCTTVLVAVHIFALMISTYLLPNIEAISKLQSTKLV 618 (718)
Q Consensus 539 i~~~v~~~AlM~~t~i~P~~~vamVE~Q~~e~t~~P~~Lli~Fav~TTvLVAVHlfALMISTcILPnIeAvsnl~nl~~v 618 (718)
++|+|+|++|||+|||||||||||||||||||||++|+||++++
T Consensus 91 ------------------------------------~~lLIaf~~cTtlLVaVHllALmiSTCILPniEav~n~hnln~v 134 (245)
T KOG4298|consen 91 ------------------------------------PPLLIAFSACTTLLVAVHLLALMISTCILPNIEAVSNLHNLNSV 134 (245)
T ss_pred ------------------------------------CceeehHHHHHHHHHHHHHHHHHHHhcccccHHHhccccccccc
Confidence 55799999999999999999999999999999999999999999
Q ss_pred CCChhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhheeeecccchh-HHHHHHHhhHhHHHHHHHHHHHHHHhhhhhhhhh
Q psy15988 619 SESPHERMRGFVELAWAFSTVLGLFLFLVEVAILCWVKFWDYSLR-AAIAATIIVIPVLIIFVVFVVHFYHNVVKYKCKT 697 (718)
Q Consensus 619 ~esPHeRm~~yIElAW~FSTvlGl~LFLaEvall~WVKF~~~s~~-AAiastiiliPv~iIFvvFa~hFYr~Lv~hk~~~ 697 (718)
+||||||||+|||+||+|||++|++|||+||+++|||||++.+.. |||++|+|++||++|||||++||||++|+||+++
T Consensus 135 ~eSPHerlh~yIelaW~FST~iGllLFL~Ei~llcwvKF~~v~~P~Aa~~st~ilvPvgliFvvFa~hfyrslVsHk~~r 214 (245)
T KOG4298|consen 135 QESPHERLHFYIELAWAFSTVIGLLLFLAEIVLLCWVKFLPVGYPTAAYISTAILVPVGLIFVVFAIHFYRSLVSHKTER 214 (245)
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeeecCCCchhhHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHH
Confidence 999999999999999999999999999999999999999999755 9999999999999999999999999999999999
Q ss_pred hhHHHHHHHH-HHhhcc
Q psy15988 698 SISDMKELED-IKKKLD 713 (718)
Q Consensus 698 ~~~~ieELe~-~k~~ld 713 (718)
++++++||++ ++.|+|
T Consensus 215 ~~~~i~el~~fl~~q~~ 231 (245)
T KOG4298|consen 215 FKHEIDELKQFLDVQLD 231 (245)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 9999999999 567776
No 3
>PF07856 Orai-1: Mediator of CRAC channel activity; InterPro: IPR012446 This entry includes Drosophila Orai and human Orai1, Orai2 and Orai3. ORAI-1 GFP reporters are co-expressed with STIM-1 (ER CA(2+) sensors) in the gonad and intestine. The protein has four predicted transmembrane domains with a highly conserved region between TM2 ad TM3. This conserved domain is thought to function in channel regulation. ORAI1-related proteins are required for the production of the calcium channel, CRAC, along with STIM1-related proteins [].
Probab=100.00 E-value=1.4e-61 Score=456.45 Aligned_cols=170 Identities=56% Similarity=0.903 Sum_probs=167.4
Q ss_pred ccchhhhhhhhhHHHHHhhhhhhhhhhhhhheeeeeeeecCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHhhcccchhh
Q psy15988 272 SEGLVWRRLHMSRAKLKATATTSELLSGFAMVAMVELQINEPTNVPEWLFIMFAVCTTVLVAVHIFALMISTYLLPNIEA 351 (718)
Q Consensus 272 ~~~lsWRrl~LsRaKLKAsSrtSALLSGFAMvAMVEiQL~~~t~~P~~LlI~favcTtllvaVhl~aLMISTcILPnIea 351 (718)
.++++||++|++||||||+|+|||||||||||||||+|+++++++|++||++||+||+++|+||++|+|||||||||||+
T Consensus 5 ~~~~e~R~l~~~r~qLka~S~~saLlaGFamvamvE~q~~~~~~~~~~LL~~f~~~TallV~v~l~almisT~iL~~I~~ 84 (175)
T PF07856_consen 5 EEDLEWRRLDLSREQLKASSNLSALLAGFAMVAMVEFQFPEDTTYPPPLLIAFAVVTALLVAVHLFALMISTCILPSIEA 84 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhheeeccc-hhHHHHHhhhhhhhhhhhhhhhhhhhh
Q psy15988 352 ISKLQSTKLVSESPHERMRGFVELAWAFSTVLGLFLFLVEVAILCWVKFWDY-SLRAAIAATIIVIPVLIIFVVFVVHFY 430 (718)
Q Consensus 352 v~nvh~ls~v~eSPHerm~~~iE~aW~FST~lGl~LFLvEIaLL~WVKF~~~-~~~AA~ast~iliPv~ivFv~Fa~HFY 430 (718)
++++|+++.+.+|||++++.|||.+|.|||++|++|||+|++++|||||++. +..||+++|+|++|++++|++|+.|||
T Consensus 85 ~~~~~~~~~~~~sP~~~f~~~cE~~W~~s~~lGi~lFL~~l~l~~WIKF~~~~~~~aa~~~t~i~~~~~li~~~~~~~~w 164 (175)
T PF07856_consen 85 VSFIHNYSPVPPSPHRRFHRYCELAWRFSTVLGIPLFLAELALLGWIKFWDSPSPAAAIAITAILVPVLLIFVVFIQHFW 164 (175)
T ss_pred HHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeehhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 899999999999999999999999999
Q ss_pred hcccccccccc
Q psy15988 431 HNVVKYKCKTS 441 (718)
Q Consensus 431 rsLv~hK~e~~ 441 (718)
|++++||+|++
T Consensus 165 r~l~~~~~~~~ 175 (175)
T PF07856_consen 165 RSLVSHKYERH 175 (175)
T ss_pred HHHHhcccccC
Confidence 99999999985
No 4
>PF07856 Orai-1: Mediator of CRAC channel activity; InterPro: IPR012446 This entry includes Drosophila Orai and human Orai1, Orai2 and Orai3. ORAI-1 GFP reporters are co-expressed with STIM-1 (ER CA(2+) sensors) in the gonad and intestine. The protein has four predicted transmembrane domains with a highly conserved region between TM2 ad TM3. This conserved domain is thought to function in channel regulation. ORAI1-related proteins are required for the production of the calcium channel, CRAC, along with STIM1-related proteins [].
Probab=100.00 E-value=1.2e-58 Score=436.61 Aligned_cols=172 Identities=56% Similarity=0.883 Sum_probs=164.3
Q ss_pred CCcccchhHHhhhhHHHHHhhhhhhhhhhccceeeeeeeeecCCCCCChhHHHHhhhhhhhhhhHHHHHHHHhhccCCCC
Q psy15988 479 EDSEGLVWRRLHMSRAKLKATATTSELLSGFAMVAMVELQINEPTNVPEWLFIMFAVCTTVLVAVHIFALMISTYLLPGN 558 (718)
Q Consensus 479 e~s~~lsWRrl~LSRaKLKAsSrtSALLSGFAMVAmVEiql~~~t~~P~~l~iafAv~tti~~~v~~~AlM~~t~i~P~~ 558 (718)
...++++||++|++|||||++|++||||||||||||||+|+++++++|+
T Consensus 3 ~~~~~~e~R~l~~~r~qLka~S~~saLlaGFamvamvE~q~~~~~~~~~------------------------------- 51 (175)
T PF07856_consen 3 WREEDLEWRRLDLSREQLKASSNLSALLAGFAMVAMVEFQFPEDTTYPP------------------------------- 51 (175)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEEEecCCCCCCch-------------------------------
Confidence 3446789999999999999999999999999999999999998876664
Q ss_pred chhhhhhhcCCCCCCcchhhHhhhhhhHHHHHHHHHHHHHHhhcchhhhhhhcccccCCCCCChhhhhhhhhhhhHHHHH
Q psy15988 559 DVAMVELQINEPTNVPEWLFIMFAVCTTVLVAVHIFALMISTYLLPNIEAISKLQSTKLVSESPHERMRGFVELAWAFST 638 (718)
Q Consensus 559 ~vamVE~Q~~e~t~~P~~Lli~Fav~TTvLVAVHlfALMISTcILPnIeAvsnl~nl~~v~esPHeRm~~yIElAW~FST 638 (718)
+|+++||+|||++|++|++|+|||||||||||+++|+|+.+.++++||+||+.|||.+|.|||
T Consensus 52 -----------------~LL~~f~~~TallV~v~l~almisT~iL~~I~~~~~~~~~~~~~~sP~~~f~~~cE~~W~~s~ 114 (175)
T PF07856_consen 52 -----------------PLLIAFAVVTALLVAVHLFALMISTCILPSIEAVSFIHNYSPVPPSPHRRFHRYCELAWRFST 114 (175)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhheeeeccc-chhHHHHHHHhhHhHHHHHHHHHHHHHHhhhhhhhhhh
Q psy15988 639 VLGLFLFLVEVAILCWVKFWDY-SLRAAIAATIIVIPVLIIFVVFVVHFYHNVVKYKCKTS 698 (718)
Q Consensus 639 vlGl~LFLaEvall~WVKF~~~-s~~AAiastiiliPv~iIFvvFa~hFYr~Lv~hk~~~~ 698 (718)
++|++|||+|++++||||||++ +..|||++|+|++|++++|++|++||||++++||+++|
T Consensus 115 ~lGi~lFL~~l~l~~WIKF~~~~~~~aa~~~t~i~~~~~li~~~~~~~~wr~l~~~~~~~~ 175 (175)
T PF07856_consen 115 VLGIPLFLAELALLGWIKFWDSPSPAAAIAITAILVPVLLIFVVFIQHFWRSLVSHKYERH 175 (175)
T ss_pred HHHHHHHHHHHHHHHheeehhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 9999999999999999999999 78999999999999999999999999999999999875
No 5
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=76.65 E-value=29 Score=35.92 Aligned_cols=90 Identities=12% Similarity=0.244 Sum_probs=62.4
Q ss_pred hhHHHHHhhhhhhhhhhccceeeeeeeeecCCCCCChhHHHHhhhhhhhh---hhHHHHHHHHhhccCCCCchhhhhhhc
Q psy15988 491 MSRAKLKATATTSELLSGFAMVAMVELQINEPTNVPEWLFIMFAVCTTVL---VAVHIFALMISTYLLPGNDVAMVELQI 567 (718)
Q Consensus 491 LSRaKLKAsSrtSALLSGFAMVAmVEiql~~~t~~P~~l~iafAv~tti~---~~v~~~AlM~~t~i~P~~~vamVE~Q~ 567 (718)
++|-+-.-.++.+|-||-+++-++ .+-+++++++.+.+. .........+.- ..|.---.+||-.+
T Consensus 24 ~~r~~~d~~~~~aa~layy~lLSl-----------~P~Llv~~sl~~~~~~~~~~~~~~~~~i~~-~~P~~~~~~i~~~l 91 (303)
T COG1295 24 LERFNEDDGSLLAAALAYYTLLSL-----------FPLLLVVFSLLGFFLAHPILLEDLLFIIAN-LLPEQAADVIEDYL 91 (303)
T ss_pred HHHHhhccHhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhcCCchhHHHHHHHHHH-hCCHHHHHHHHHHH
Confidence 334455566778888888888775 346788888888874 455555555555 77877778899998
Q ss_pred CCCCCCcchhhHhhhhhhHHHHHHH
Q psy15988 568 NEPTNVPEWLFIMFAVCTTVLVAVH 592 (718)
Q Consensus 568 ~e~t~~P~~Lli~Fav~TTvLVAVH 592 (718)
++-.+.+.+.+.+.++++++-.+.-
T Consensus 92 ~~~~~~~~~~~~~~g~~~~lwtas~ 116 (303)
T COG1295 92 KNFLSQSRGSLLSLGLVVALWTASN 116 (303)
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHHH
Confidence 8777777766766677666555544
No 6
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=73.36 E-value=28 Score=37.64 Aligned_cols=145 Identities=19% Similarity=0.308 Sum_probs=80.9
Q ss_pred hhHHhhhhHHHHHhhhhhhh-hhhccceeeeeeeeecCCCCCChhHHHHhhhhhhhhhhHHHHHHHHhhccCCCCchhhh
Q psy15988 485 VWRRLHMSRAKLKATATTSE-LLSGFAMVAMVELQINEPTNVPEWLFIMFAVCTTVLVAVHIFALMISTYLLPGNDVAMV 563 (718)
Q Consensus 485 sWRrl~LSRaKLKAsSrtSA-LLSGFAMVAmVEiql~~~t~~P~~l~iafAv~tti~~~v~~~AlM~~t~i~P~~~vamV 563 (718)
.|-..+|.+..+|-.-|.+. .-.+++|.- .|+. ...+-+..-++.+++...-|+..+++
T Consensus 5 ~W~~~~ld~~~~k~~~k~~i~~~i~~~l~~-----------i~~~--------~~~~g~~~yl~~i~~~~~~p~~~~~~- 64 (459)
T PF10337_consen 5 AWLLDHLDRRSLKIMFKCWIAPWIALILCQ-----------IPPV--------ARWLGTAGYLAPIISVIVPPGRPRGK- 64 (459)
T ss_pred hhhhcCCCHHHHHHHHHHHHHHHHHHHHHh-----------chHH--------HHHhcchhHHHHHHHHHcCCCchHHH-
Confidence 57777788888888777552 112222211 1111 12223445566666666666554443
Q ss_pred hhhcCCCCCCcchhhHhhhhhhHHHHHHHHHHHHHHhhcchhhhhhhccccc---C---CCCCChhhhhhhhhhhhH---
Q psy15988 564 ELQINEPTNVPEWLFIMFAVCTTVLVAVHIFALMISTYLLPNIEAISKLQST---K---LVSESPHERMRGFVELAW--- 634 (718)
Q Consensus 564 E~Q~~e~t~~P~~Lli~Fav~TTvLVAVHlfALMISTcILPnIeAvsnl~nl---~---~v~esPHeRm~~yIElAW--- 634 (718)
-++ ..++..+++|.. .|.+++|+-+++-..++ +.-..++.+ . ..+.+|..-.+..|--..
T Consensus 65 ~~~--------~~~~~~~g~~~g--~~~~~l~~~~a~~aR~~-~t~a~l~~~~~~~~~~~s~~~~~~~~~~~i~~G~~~~ 133 (459)
T PF10337_consen 65 FLE--------AMILLLLGVCLG--WAWGLLAMYIAVAARPH-DTQARLQQLQQSAGACTSGPNPAACAQQLIFDGFFYD 133 (459)
T ss_pred HHH--------HHHHHHHHHHHH--HHHHHHHHHHHHHHccC-ccHHHHHHHHHHhccccCCCChhHHHHHhhcccceec
Confidence 222 225777788877 78889999999999988 333332211 1 233455444443322211
Q ss_pred -HHHHHHHHHHHHHHHHHhheeeecccc
Q psy15988 635 -AFSTVLGLFLFLVEVAILCWVKFWDYS 661 (718)
Q Consensus 635 -~FSTvlGl~LFLaEvall~WVKF~~~s 661 (718)
.-|.|.|++||+. +.+.+|+|-+...
T Consensus 134 a~~saV~av~l~~~-i~~~~~lRa~~p~ 160 (459)
T PF10337_consen 134 ARASAVFAVFLFVF-IYFHGWLRAKNPK 160 (459)
T ss_pred chHHHHHHHHHHHH-HHHHHHHHHhCcc
Confidence 2356667777666 6777777777664
No 7
>KOG4721|consensus
Probab=73.14 E-value=18 Score=42.70 Aligned_cols=55 Identities=24% Similarity=0.291 Sum_probs=33.2
Q ss_pred hhcccCCcceeeccCchhhhhhhhhccccccccccccCCCCCCCCCCCCCceeeecCCC
Q psy15988 39 ELEHNLNPIRLRTSSHSSVKRRLLTRTSSQASLTSRTGRSDLRPRSGLERPILRVNTSP 97 (718)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (718)
+--||.||.| .|..+-+.+..|..--+.+.-.+-|+|.--..----|-+-+|++|
T Consensus 469 ~pg~~~kp~r----~~~nt~~k~~krrg~p~n~g~qs~~pD~~~~p~r~~p~~dsn~s~ 523 (904)
T KOG4721|consen 469 CPGHLYKPSR----LHGNTMEKLIKRRGVPQNLGPQSQRPDILKAPSRLLPKLDSNLSS 523 (904)
T ss_pred CCCcCCCccc----cchHHHHHHHHhcCCCcccCcccCCCccccCcccCCccccccCCc
Confidence 3448999998 677777777666664444444444555432211123677888886
No 8
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=63.49 E-value=11 Score=34.57 Aligned_cols=41 Identities=17% Similarity=0.343 Sum_probs=28.4
Q ss_pred HHhhHhHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhccCCCC
Q psy15988 669 TIIVIPVLIIFVVFVVHFYHNVVKYKCKTSISDMKELEDIKKKLDAGHV 717 (718)
Q Consensus 669 tiiliPv~iIFvvFa~hFYr~Lv~hk~~~~~~~ieELe~~k~~ld~~~~ 717 (718)
...++|++++|++|-+.++|. .+++-+|.+++.++|..|+-
T Consensus 18 ~~~ll~lvii~~i~yf~~~Rp--------qkK~~k~~~~~~~~Lk~Gd~ 58 (106)
T PRK05585 18 LSSLLPLVVFFAIFYFLIIRP--------QQKRQKEHKKMLSSLAKGDE 58 (106)
T ss_pred HHHHHHHHHHHHHHHHHhccH--------HHHHHHHHHHHHHhcCCCCE
Confidence 356678888888887776663 33444666888888887763
No 9
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=61.55 E-value=92 Score=32.87 Aligned_cols=155 Identities=17% Similarity=0.270 Sum_probs=78.5
Q ss_pred hhhhhhhhhhccceeeeeeeeecCCCCCChhHHHHhhhhhhhhhhHHHHHHHHhhcc-CCCCchhhhhhhcCCCCCCcch
Q psy15988 498 ATATTSELLSGFAMVAMVELQINEPTNVPEWLFIMFAVCTTVLVAVHIFALMISTYL-LPGNDVAMVELQINEPTNVPEW 576 (718)
Q Consensus 498 AsSrtSALLSGFAMVAmVEiql~~~t~~P~~l~iafAv~tti~~~v~~~AlM~~t~i-~P~~~vamVE~Q~~e~t~~P~~ 576 (718)
..|-.|.+-+.|.++...=.+- ...|..=+|.|+.++.++..+ +-|+++.. -..-|-++--.| +
T Consensus 15 ~~s~lSllGclfiI~tf~~~k~---~r~~~~rli~yl~~~~ll~~v---~~~~~~~~~~~~~~s~lC~~Q---------a 79 (303)
T PF05462_consen 15 VASVLSLLGCLFIIITFCLFKR---LRKPINRLIFYLSIANLLTNV---ASMIMTLSPSAGENSFLCQFQ---------A 79 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hCccHHHHHHHHHHHHHHHHH---HHHHHHhcccCCCCCcchhhH---------h
Confidence 3455566666666655544331 123444567788887776552 22222221 001111111111 1
Q ss_pred hhHhhhhhhHHHHHHHHHHHHHHhhcchhhhhhhcccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHHHHHH----HHh
Q psy15988 577 LFIMFAVCTTVLVAVHIFALMISTYLLPNIEAISKLQSTKLVSESPHERMRGFVELAWAFSTVLGLFLFLVEV----AIL 652 (718)
Q Consensus 577 Lli~Fav~TTvLVAVHlfALMISTcILPnIeAvsnl~nl~~v~esPHeRm~~yIElAW~FSTvlGl~LFLaEv----all 652 (718)
.++-| -.+|.-+..++|+..+.-.+ . + ..++|.+-.+.|.=.+|++..+..++.|.... +--
T Consensus 80 fliq~-----f~~as~lWt~~iA~nly~~~---~--~----~~~~~~k~e~~Y~l~~wGiPli~a~i~l~~~~~g~~G~W 145 (303)
T PF05462_consen 80 FLIQF-----FMLASFLWTLCIAFNLYLTF---V--K----RYDELEKLEKYYHLVCWGIPLIPAVIPLIGNDYGPAGNW 145 (303)
T ss_pred HHHHH-----hhHHHHHHHHHHHHHhhhee---E--E----cCccHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCc
Confidence 22222 23455556666666554331 1 0 12345444478888999999888777664432 346
Q ss_pred heeeecccchhHHHHHHHhhHhHHHHHHHHHHH
Q psy15988 653 CWVKFWDYSLRAAIAATIIVIPVLIIFVVFVVH 685 (718)
Q Consensus 653 ~WVKF~~~s~~AAiastiiliPv~iIFvvFa~h 685 (718)
||++=.... +-=...-+|+.++|.++++.
T Consensus 146 CWI~~~~~~----~r~~lfY~Pl~ii~~~~~il 174 (303)
T PF05462_consen 146 CWIKPEWDV----WRFALFYIPLWIIIIISAIL 174 (303)
T ss_pred eeecCCCcc----hHHHHHHHHHHHHHHHHHHH
Confidence 898732212 22234567877777666553
No 10
>PF02366 PMT: Dolichyl-phosphate-mannose-protein mannosyltransferase ; InterPro: IPR003342 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Dolichyl-phosphate-mannose-protein mannosyltransferase proteins 2.4.1.109 from EC belong to the glycosyltransferase family 39 (GT39 from CAZY) and are responsible for O-linked glycosylation of proteins. They catalyse the reaction: Dolichyl phosphate D-mannose + protein -> dolichyl phosphate + O-D-mannosyl-protein. The transfer of mannose to seryl and threonyl residues of secretory proteins is catalyzed by a family of protein mannosyltransferases in Saccharomyces cerevisiae coded for by seven genes (PMT1-7). Protein O-glycosylation is essential for cell wall rigidity and cell integrity and this protein modification is vital for S. cerevisiae [].; GO: 0000030 mannosyltransferase activity, 0006493 protein O-linked glycosylation, 0016020 membrane
Probab=60.09 E-value=46 Score=32.29 Aligned_cols=24 Identities=46% Similarity=0.596 Sum_probs=20.1
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhh
Q psy15988 407 AAIAATIIVIPVLIIFVVFVVHFY 430 (718)
Q Consensus 407 AA~ast~iliPv~ivFv~Fa~HFY 430 (718)
++.+...+++|..+-...|.+||-
T Consensus 219 ~~~~~~li~iP~~~~~~~~~~hf~ 242 (245)
T PF02366_consen 219 FARLLLLIVIPWLIYVLVFYPHFL 242 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677899999998889999984
No 11
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=57.27 E-value=16 Score=34.00 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=27.2
Q ss_pred HHhhHhHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhccCCC
Q psy15988 669 TIIVIPVLIIFVVFVVHFYHNVVKYKCKTSISDMKELEDIKKKLDAGH 716 (718)
Q Consensus 669 tiiliPv~iIFvvFa~hFYr~Lv~hk~~~~~~~ieELe~~k~~ld~~~ 716 (718)
...++|++++|++|.+.+.|- ++++.+|..+|.++|..|+
T Consensus 4 ~~~ll~lv~i~~i~yF~~iRP--------QkKr~K~~~~m~~~Lk~GD 43 (109)
T PRK05886 4 LVLFLPFLLIMGGFMYFASRR--------QRKAMQATIDLHESLQPGD 43 (109)
T ss_pred HHHHHHHHHHHHHHHHHHccH--------HHHHHHHHHHHHHhcCCCC
Confidence 456678888888877666543 3445566677888887776
No 12
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=56.76 E-value=14 Score=32.41 Aligned_cols=40 Identities=18% Similarity=0.399 Sum_probs=26.6
Q ss_pred HhhHhHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhccCCCC
Q psy15988 670 IIVIPVLIIFVVFVVHFYHNVVKYKCKTSISDMKELEDIKKKLDAGHV 717 (718)
Q Consensus 670 iiliPv~iIFvvFa~hFYr~Lv~hk~~~~~~~ieELe~~k~~ld~~~~ 717 (718)
..++|++++|++|.+.+.|. .+++-++.++|.++|..|+-
T Consensus 4 ~~l~~~vv~~~i~yf~~~rp--------qkK~~k~~~~m~~~L~~Gd~ 43 (84)
T TIGR00739 4 TTLLPLVLIFLIFYFLIIRP--------QRKRRKAHKKLIESLKKGDK 43 (84)
T ss_pred HHHHHHHHHHHHHHHheech--------HHHHHHHHHHHHHhCCCCCE
Confidence 34567777788877766653 23445566778888887763
No 13
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=53.87 E-value=50 Score=32.10 Aligned_cols=54 Identities=9% Similarity=0.206 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHhhheeeccch----hHHHHHhhhhhhhhhhhhhhhhhhhhhc
Q psy15988 379 FSTVLGLFLFLVEVAILCWVKFWDYS----LRAAIAATIIVIPVLIIFVVFVVHFYHN 432 (718)
Q Consensus 379 FST~lGl~LFLvEIaLL~WVKF~~~~----~~AA~ast~iliPv~ivFv~Fa~HFYrs 432 (718)
++|..|..++..-++++...-+.... ...-.....+.+=+++++++++++.++.
T Consensus 32 ~af~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lGv~ll~~a~~~~~~ 89 (214)
T PF11139_consen 32 LAFLAGWFLGYLAVGLVLLFGLDALPSGSSSAPSPVVGWLQLVLGVLLLLLAVRVWRR 89 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44555555555555555554444433 1235556667777888999998876543
No 14
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=52.61 E-value=25 Score=32.19 Aligned_cols=40 Identities=23% Similarity=0.546 Sum_probs=27.2
Q ss_pred HHhhHhHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhccCCC
Q psy15988 669 TIIVIPVLIIFVVFVVHFYHNVVKYKCKTSISDMKELEDIKKKLDAGH 716 (718)
Q Consensus 669 tiiliPv~iIFvvFa~hFYr~Lv~hk~~~~~~~ieELe~~k~~ld~~~ 716 (718)
...++|++++|++|-|.++|- +..+++|-++|.+.|..||
T Consensus 9 ~~~ll~~vl~~~ifyFli~RP--------QrKr~K~~~~ml~sL~kGD 48 (97)
T COG1862 9 LVLLLPLVLIFAIFYFLIIRP--------QRKRMKEHQELLNSLKKGD 48 (97)
T ss_pred HHHHHHHHHHHHHHHHhhcCH--------HHHHHHHHHHHHHhccCCC
Confidence 456788888888888877774 3345555566666666665
No 15
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=46.35 E-value=34 Score=32.06 Aligned_cols=36 Identities=17% Similarity=0.354 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhccCCC
Q psy15988 676 LIIFVVFVVHFYHNVVKYKCKTSISDMKELEDIKKKLDAGH 716 (718)
Q Consensus 676 ~iIFvvFa~hFYr~Lv~hk~~~~~~~ieELe~~k~~ld~~~ 716 (718)
+++|++|..-|| -+ ...++++.+|..+|.+.|..|+
T Consensus 6 il~~vv~~~i~y-f~----iRPQkKr~Ke~~em~~sLk~GD 41 (113)
T PRK06531 6 IIMFVVMLGLIF-FM----QRQQKKQAQERQNQLNAIQKGD 41 (113)
T ss_pred HHHHHHHHHHHH-he----echHHHHHHHHHHHHHhcCCCC
Confidence 334444444455 12 3345556666777778887776
No 16
>PF14752 RBP_receptor: Retinol binding protein receptor
Probab=45.82 E-value=5.7e+02 Score=30.15 Aligned_cols=53 Identities=13% Similarity=0.228 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHhhheee--ccchhHHHHHhhhhhhhhhhhhhhhhhhhh
Q psy15988 378 AFSTVLGLFLFLVEVAILCWVKF--WDYSLRAAIAATIIVIPVLIIFVVFVVHFY 430 (718)
Q Consensus 378 ~FST~lGl~LFLvEIaLL~WVKF--~~~~~~AA~ast~iliPv~ivFv~Fa~HFY 430 (718)
..++++|.++=++-.++.-|-+. -.-.....+-+....+|.++-.+.-.++|-
T Consensus 127 ~vg~iLG~~yS~~~~~v~V~q~~~Cp~~~~i~~Y~~Ll~~lP~llCL~fL~~~f~ 181 (617)
T PF14752_consen 127 LVGYILGSLYSWTHFGVQVWQKVDCPQGPFIYKYYSLLASLPQLLCLAFLSLWFP 181 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHhheeECCCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 46778998888888777777665 444556667788888895544444444433
No 17
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=42.32 E-value=1.4e+02 Score=33.24 Aligned_cols=66 Identities=23% Similarity=0.470 Sum_probs=35.7
Q ss_pred hhhhhhhhhH---------------HHHHHHHHHHHHHHHH-H----------hheeeecccchhHHHHHHHhhHhHHHH
Q psy15988 625 RMRGFVELAW---------------AFSTVLGLFLFLVEVA-I----------LCWVKFWDYSLRAAIAATIIVIPVLII 678 (718)
Q Consensus 625 Rm~~yIElAW---------------~FSTvlGl~LFLaEva-l----------l~WVKF~~~s~~AAiastiiliPv~iI 678 (718)
|-+.|-|.+| .+.+++|++||+.=+. + ..+-+|+++..-+++...+.+..++ +
T Consensus 99 r~~sy~~yawP~~lgkl~~~~~l~i~~ai~~~l~l~l~~~~~~~~~l~~~~~~~~Fy~~~p~~~~~~if~~~~~~a~~-~ 177 (389)
T PRK15033 99 RLETYQEYAWPAALGALYRRNGLTLSLALAVGLALFLLLAVALKGSLLHAPLAGNFYAIFPHNLLALMFGSVFLFAIL-A 177 (389)
T ss_pred HHHHHHHccCcHHHHHhhccCccHHHHHHHHHHHHHHHHHHHhcccccCCCCCcceeeecCHHHHHHHHHHHHHHHHH-H
Confidence 5678899999 2345556666654421 1 2244555666555444444333333 3
Q ss_pred HHHHHHHHHHhhh
Q psy15988 679 FVVFVVHFYHNVV 691 (718)
Q Consensus 679 FvvFa~hFYr~Lv 691 (718)
|..=..+|+|...
T Consensus 178 l~~gv~rfWr~i~ 190 (389)
T PRK15033 178 LGIGVRRFWRDVS 190 (389)
T ss_pred HHHHHHHHHHHhc
Confidence 3334557888875
No 18
>COG5473 Predicted integral membrane protein [Function unknown]
Probab=40.98 E-value=1.7e+02 Score=31.71 Aligned_cols=167 Identities=16% Similarity=0.134 Sum_probs=83.9
Q ss_pred hhhhhhccceeeeeeeeecCCCCCChhHHHHhhhh------hhhhhhHH-HHHHHHhh-----ccC-CCCchh----hhh
Q psy15988 502 TSELLSGFAMVAMVELQINEPTNVPEWLFIMFAVC------TTVLVAVH-IFALMIST-----YLL-PGNDVA----MVE 564 (718)
Q Consensus 502 tSALLSGFAMVAmVEiql~~~t~~P~~l~iafAv~------tti~~~v~-~~AlM~~t-----~i~-P~~~va----mVE 564 (718)
.+||+.++|-....|+--.+...++....+++++. +.+.+..+ +||||.-- -|+ =.++++ +=+
T Consensus 95 gfalI~P~aA~~ly~~S~R~e~~~~~s~~~a~~vr~~p~~pA~~~V~~~~l~alF~lwl~~a~~iy~~~fgi~~p~ti~t 174 (290)
T COG5473 95 GFALIGPAAAIGLYEISRRRELGYDASWGHALEVRDSPMTPAILAVMGLGLFALFALWLYMAQGIYTGCFGIAPPVTIST 174 (290)
T ss_pred HHHhhcchhhhhheeeehhhhhcCcccccceeEEeeccCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccHHH
Confidence 67788888888889998776666776667777765 33445556 56655310 000 001111 000
Q ss_pred h-hcCCCCCCcchhhHhhhhhhHHHHHHHHHHHHHHhhcchhhhhhhcccccCCCCCChhhhhhhhhhhhHH---HHHHH
Q psy15988 565 L-QINEPTNVPEWLFIMFAVCTTVLVAVHIFALMISTYLLPNIEAISKLQSTKLVSESPHERMRGFVELAWA---FSTVL 640 (718)
Q Consensus 565 ~-Q~~e~t~~P~~Lli~Fav~TTvLVAVHlfALMISTcILPnIeAvsnl~nl~~v~esPHeRm~~yIElAW~---FSTvl 640 (718)
. |..--|. -+|-++..+..--++-|+-.++ ++.+-.|. +-+-+-++.+-++.=++..|. -+.+.
T Consensus 175 F~~~vltTg-~g~~~~~lG~~~g~vfal~~~~--~~v~avp~---------llDr~v~A~sAv~tSv~~vl~N~~~~~Lw 242 (290)
T COG5473 175 FFRLVLTTG-LGWALIFLGNLIGVVFALFFLA--TTVFAVPL---------LLDRDVGAISAVETSVRAVLANPGPMLLW 242 (290)
T ss_pred HHHHHhccc-hhhHHHHHHHHHHHHHHHHHhh--hheeeeee---------eeccCcCchHHHHHHHHHHHcCchhHHHH
Confidence 0 0000001 1222333333333333332222 44444444 223345677777777777775 23344
Q ss_pred HHHHHHHHHHHhheeeecccchhHHHHHHHhhHhHHHHHHHHHHHHHHhhhhh
Q psy15988 641 GLFLFLVEVAILCWVKFWDYSLRAAIAATIIVIPVLIIFVVFVVHFYHNVVKY 693 (718)
Q Consensus 641 Gl~LFLaEvall~WVKF~~~s~~AAiastiiliPv~iIFvvFa~hFYr~Lv~h 693 (718)
|++-+-.-+ ++..-+.+..+|++|++- --..|.||++..-
T Consensus 243 gLiv~~~ll----------IG~~~~f~GL~Vv~Pvlg---haTwH~YRkl~~~ 282 (290)
T COG5473 243 GLIVAAALL----------IGSLPIFVGLAVVLPVLG---HATWHLYRKLSGG 282 (290)
T ss_pred HHHHHHHHH----------HHHHHHHHHHHHHHHHhh---hhHHHHHHHhhcC
Confidence 443311111 122334566778888754 4567999998643
No 19
>PRK10772 cell division protein FtsL; Provisional
Probab=40.22 E-value=34 Score=31.93 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=33.7
Q ss_pred hhhhhhhhhhhcccccccccchhhhHHHHHHHHhhhcCCcccccccccccccccccCcCCcccchhHHhhhhHHHHHhhh
Q psy15988 421 IFVVFVVHFYHNVVKYKCKTSISDMKELEDIKKKLDAGHVLYKNHSRRDLGHHFEELPEDSEGLVWRRLHMSRAKLKATA 500 (718)
Q Consensus 421 vFv~Fa~HFYrsLv~hK~e~~~~~i~eLe~~~~qLDaGHVlY~~w~drdll~~~~~~qe~s~~lsWRrl~LSRaKLKAsS 500 (718)
+.+|.+-|-.|.+ +.+.++++.-+++|| .+|++|.|+..-|-+-+
T Consensus 38 l~VV~~~h~tR~l--------~~ele~l~~e~~~Le---------------------------~Ew~~L~LEqstla~hs 82 (108)
T PRK10772 38 VTVVTTAHHTRLL--------TAEREQLVLERDALD---------------------------IEWRNLILEENALGDHS 82 (108)
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHhhhhh
Confidence 3455666666665 455566666666666 46999999988887777
Q ss_pred hhhhh
Q psy15988 501 TTSEL 505 (718)
Q Consensus 501 rtSAL 505 (718)
|.-.+
T Consensus 83 RIE~i 87 (108)
T PRK10772 83 RVERI 87 (108)
T ss_pred HHHHH
Confidence 76553
No 20
>KOG3359|consensus
Probab=39.80 E-value=36 Score=40.32 Aligned_cols=25 Identities=40% Similarity=0.503 Sum_probs=22.7
Q ss_pred hHHHHHhhhhhhhhhhhhhhhhhhh
Q psy15988 405 LRAAIAATIIVIPVLIIFVVFVVHF 429 (718)
Q Consensus 405 ~~AA~ast~iliPv~ivFv~Fa~HF 429 (718)
...|-+-+.|.||++|-.+.|++||
T Consensus 256 h~~ar~~~LI~iP~~iYl~~F~vHf 280 (723)
T KOG3359|consen 256 HLLARLFFLIGIPFLIYLLFFYVHF 280 (723)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999999999999999995
No 21
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=39.63 E-value=2.6e+02 Score=30.29 Aligned_cols=162 Identities=14% Similarity=0.117 Sum_probs=75.2
Q ss_pred HHHhhhhhhhhhhccceeeeeeeeecCCCCCChhHHHHhhhhhhhhhh----HHHHHHHHhhccCCCCchhhhhhhcCCC
Q psy15988 495 KLKATATTSELLSGFAMVAMVELQINEPTNVPEWLFIMFAVCTTVLVA----VHIFALMISTYLLPGNDVAMVELQINEP 570 (718)
Q Consensus 495 KLKAsSrtSALLSGFAMVAmVEiql~~~t~~P~~l~iafAv~tti~~~----v~~~AlM~~t~i~P~~~vamVE~Q~~e~ 570 (718)
.=......+|-|+-+++.++| +-++++|++.+.+... ..+..+ +...+.|...-.+++ .+++=
T Consensus 28 ~~~~~~~~AaaLty~tlLSl~-----------Pll~v~~~i~~~f~~~~~~~~~l~~~-i~~~l~P~~~~~i~~-~l~~~ 94 (412)
T PRK04214 28 LDDRLFQAAASLTFTTLLALV-----------PLATVVFGVLSAFPVFDEWSDQFVDF-VFSNFVPQAARSVFD-YLNQF 94 (412)
T ss_pred HhCcHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHccchHHHHHHHHHH-HHHhcCchHHHHHHH-HHHHH
Confidence 334456678888888888753 3677888888776432 223333 334455765544444 33211
Q ss_pred -CCCcchhhHhhhhhhHHHHHHHHHHHHHHhhcchhhhhhhc-ccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy15988 571 -TNVPEWLFIMFAVCTTVLVAVHIFALMISTYLLPNIEAISK-LQSTKLVSESPHERMRGFVELAWAFSTVLGLFLFLVE 648 (718)
Q Consensus 571 -t~~P~~Lli~Fav~TTvLVAVHlfALMISTcILPnIeAvsn-l~nl~~v~esPHeRm~~yIElAW~FSTvlGl~LFLaE 648 (718)
++. +-+..++++..+.-|+ .++-.||..=| +..... +++...| +-..|.+.|+. .+|+.+.
T Consensus 95 ~~~~--~~l~~ig~~~ll~ta~---------~~~~~ie~a~N~Iw~v~~-~R~~~~~----~~~~~~vl~l~-~lll~~~ 157 (412)
T PRK04214 95 REQA--GRLTAAGSVALVVTLL---------ILLHTIEQTFNRIWRVNS-ARPWLTR----FLVYWTVLTLG-PLLLGAS 157 (412)
T ss_pred HHhc--cccHHHHHHHHHHHHH---------HHHHHHHHHHHHHhCCCC-CCcHHHH----HHHHHHHHHHH-HHHHHHH
Confidence 111 1233444443322222 22344555444 333211 2333333 22457766643 3333344
Q ss_pred HHHhheeeeccc--chhHHHHH-HHhhHhHHHHHHHHHHHH
Q psy15988 649 VAILCWVKFWDY--SLRAAIAA-TIIVIPVLIIFVVFVVHF 686 (718)
Q Consensus 649 vall~WVKF~~~--s~~AAias-tiiliPv~iIFvvFa~hF 686 (718)
+++..++..... .....+.. ..-++|+++++++|++-|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~f~~lY 198 (412)
T PRK04214 158 IAFSAGVFALPLLATTAPQWLAELARLAPLAFETVCLTLLY 198 (412)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444322110 00011111 124578888877776543
No 22
>PF10943 DUF2632: Protein of unknown function (DUF2632); InterPro: IPR024251 This is a family of potential membrane proteins that may be components of the viral envelope.
Probab=39.58 E-value=95 Score=31.53 Aligned_cols=63 Identities=30% Similarity=0.439 Sum_probs=41.2
Q ss_pred eecCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHhhcccchhhhhcccccccccCCchhhhhhHHHHHHHHHHHHHHHHH
Q psy15988 309 QINEPTNVPEWLFIMFAVCTTVLVAVHIFALMISTYLLPNIEAISKLQSTKLVSESPHERMRGFVELAWAFSTVLGLFLF 388 (718)
Q Consensus 309 QL~~~t~~P~~LlI~favcTtllvaVhl~aLMISTcILPnIeav~nvh~ls~v~eSPHerm~~~iE~aW~FST~lGl~LF 388 (718)
|+.+..++---+--.||+.-.+-|...++|+|.-|+ |-||--| -.|--|+|-.
T Consensus 23 qlsstenvyiflttlfgilqlvyvifkllctmfptl-----------------hfspiwr---glenfwlfls------- 75 (233)
T PF10943_consen 23 QLSSTENVYIFLTTLFGILQLVYVIFKLLCTMFPTL-----------------HFSPIWR---GLENFWLFLS------- 75 (233)
T ss_pred HhcccccEEeeHHHHHHHHHHHHHHHHHHHHhcccc-----------------ccchHhh---hHHHHHHHHH-------
Confidence 344444555456678999999999999999997664 4555422 3577787643
Q ss_pred HHHHHHhhhe
Q psy15988 389 LVEVAILCWV 398 (718)
Q Consensus 389 LvEIaLL~WV 398 (718)
|...++.-|.
T Consensus 76 ltslaiayww 85 (233)
T PF10943_consen 76 LTSLAIAYWW 85 (233)
T ss_pred HHHHHHHHHh
Confidence 3444555553
No 23
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=38.95 E-value=2e+02 Score=28.69 Aligned_cols=19 Identities=21% Similarity=0.646 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhhee
Q psy15988 637 STVLGLFLFLVEVAILCWV 655 (718)
Q Consensus 637 STvlGl~LFLaEvall~WV 655 (718)
...++.++++..++..+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~ 27 (356)
T PRK10755 9 LLTIGLILLVFQLISVFWL 27 (356)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3445556666666677766
No 24
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=38.49 E-value=1.6e+02 Score=27.96 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy15988 635 AFSTVLGLFLFLVEVAIL 652 (718)
Q Consensus 635 ~FSTvlGl~LFLaEvall 652 (718)
++..++|++|...-|+.+
T Consensus 9 i~~iilgilli~~gI~~L 26 (191)
T PF04156_consen 9 IILIILGILLIASGIAAL 26 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456788888666665553
No 25
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=37.69 E-value=1.6e+02 Score=25.64 Aligned_cols=67 Identities=18% Similarity=0.305 Sum_probs=48.0
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHhhcchhhhhhhcccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q psy15988 578 FIMFAVCTTVLVAVHIFALMISTYLLPNIEAISKLQSTKLVSESPHERMRGFVELAWAFSTVLGLFLFLVEVAIL 652 (718)
Q Consensus 578 li~Fav~TTvLVAVHlfALMISTcILPnIeAvsnl~nl~~v~esPHeRm~~yIElAW~FSTvlGl~LFLaEvall 652 (718)
+.+++++..+.-....+...+++..-+.+ + ...++.-++|.+.++-.+..++.++|+++.++-....
T Consensus 28 ~a~~~i~~~~~~~~~~~~~g~~~a~~~~~---s-----~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (162)
T PF01554_consen 28 LAAYGIASSIFSILFMLIFGLATALQILI---S-----QNIGAGDYKRAKKVVRQGLLLSLIIGLLLSLVLLLFS 94 (162)
T ss_dssp CCHCCHHHHHHHHHHHHHHHHHHHHHHHH---C-----CCCCSSSTTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccccccccee---e-----cccccccccccccccccccccchhcccchhhhhhhHH
Confidence 44777777766666666666666665552 2 2355677899999999999999999988888744443
No 26
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=37.63 E-value=12 Score=31.07 Aligned_cols=25 Identities=36% Similarity=0.988 Sum_probs=19.6
Q ss_pred HHHH--HHHHHHHHHHHHHHhhheeecc
Q psy15988 377 WAFS--TVLGLFLFLVEVAILCWVKFWD 402 (718)
Q Consensus 377 W~FS--T~lGl~LFLvEIaLL~WVKF~~ 402 (718)
|+|- .++|.+||++-|++ ||-+.-+
T Consensus 2 Wl~V~~iilg~~ll~~Ligi-CwCQcCp 28 (49)
T PF05624_consen 2 WLFVVLIILGALLLLLLIGI-CWCQCCP 28 (49)
T ss_pred eEEEeHHHHHHHHHHHHHHH-HHHhcCc
Confidence 5553 38999999999999 8977644
No 27
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=37.46 E-value=1.4e+02 Score=26.33 Aligned_cols=12 Identities=17% Similarity=0.315 Sum_probs=5.5
Q ss_pred hhhhhhhhHHHH
Q psy15988 692 KYKCKTSISDMK 703 (718)
Q Consensus 692 ~hk~~~~~~~ie 703 (718)
....+...++++
T Consensus 101 ~~~~~~t~~~l~ 112 (121)
T PF07332_consen 101 PPPFEETIAELK 112 (121)
T ss_pred CCCHHHHHHHHH
Confidence 344444444443
No 28
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=37.22 E-value=83 Score=27.82 Aligned_cols=40 Identities=8% Similarity=0.109 Sum_probs=20.8
Q ss_pred hHHHHHhhhhhhhhhhhhhhhhhhhhhcccccccccchhhh
Q psy15988 405 LRAAIAATIIVIPVLIIFVVFVVHFYHNVVKYKCKTSISDM 445 (718)
Q Consensus 405 ~~AA~ast~iliPv~ivFv~Fa~HFYrsLv~hK~e~~~~~i 445 (718)
+.|+.+.+.+.+-+..++..++.+-.+. .....+.+.+++
T Consensus 72 ~~a~liv~~~~l~la~i~~~~~~~~l~~-~~~~~~~t~~~l 111 (121)
T PF07332_consen 72 WLAFLIVAGLYLLLALILLLIGRRRLRR-APPPFEETIAEL 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHH
Confidence 3555555555555666666666555443 344444444443
No 29
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=35.04 E-value=1.3e+02 Score=31.50 Aligned_cols=38 Identities=16% Similarity=0.278 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhc
Q psy15988 675 VLIIFVVFVVHFYHNVVKYKCKTSISDMKELEDIKKKL 712 (718)
Q Consensus 675 v~iIFvvFa~hFYr~Lv~hk~~~~~~~ieELe~~k~~l 712 (718)
+++++.+++.-++..++...++.-.+..++++.+|+-|
T Consensus 436 ~~~i~~~i~~~~~~~~~~~~T~~G~~~~~~~~gfr~~L 473 (511)
T PF09972_consen 436 VLIIIGIIALIIFYKVMPRRTPEGAELYAQWKGFRRYL 473 (511)
T ss_pred HHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHH
Confidence 33333333333344555556666666666666655544
No 30
>PHA03163 hypothetical protein; Provisional
Probab=34.62 E-value=58 Score=30.16 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhcccchhhhhc
Q psy15988 333 AVHIFALMISTYLLPNIEAISK 354 (718)
Q Consensus 333 aVhl~aLMISTcILPnIeav~n 354 (718)
+=|.++++||.|+|-|...|-.
T Consensus 6 ~~~~i~~li~lcl~~nv~~~~~ 27 (92)
T PHA03163 6 ARHGIFLLICLCLLDNVSQVLC 27 (92)
T ss_pred hhhhHHHHHHHHHhhhhHHHHH
Confidence 4588999999999999886543
No 31
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=34.58 E-value=2.1e+02 Score=26.35 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy15988 636 FSTVLGLFLFLVEVAI 651 (718)
Q Consensus 636 FSTvlGl~LFLaEval 651 (718)
+.||+|++.-+..+..
T Consensus 71 lGTv~Gmi~~f~~l~~ 86 (139)
T PF01618_consen 71 LGTVIGMIEAFQALAE 86 (139)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5789999888877764
No 32
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=33.33 E-value=75 Score=28.10 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=12.0
Q ss_pred HhhHhHHHHHHHHH-----HHHHHhhh
Q psy15988 670 IIVIPVLIIFVVFV-----VHFYHNVV 691 (718)
Q Consensus 670 iiliPv~iIFvvFa-----~hFYr~Lv 691 (718)
.++++.+++|++|. +.-||+.-
T Consensus 4 ~fl~~plivf~ifVap~WL~lHY~sk~ 30 (75)
T PF06667_consen 4 EFLFVPLIVFMIFVAPIWLILHYRSKW 30 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555566666665 34466543
No 33
>PRK09458 pspB phage shock protein B; Provisional
Probab=33.20 E-value=58 Score=29.11 Aligned_cols=15 Identities=40% Similarity=0.678 Sum_probs=10.0
Q ss_pred hhhhhhhhhhhhhhh
Q psy15988 413 IIVIPVLIIFVVFVV 427 (718)
Q Consensus 413 ~iliPv~ivFv~Fa~ 427 (718)
.++++.+|||++|..
T Consensus 4 ~fl~~PliiF~ifVa 18 (75)
T PRK09458 4 LFLAIPLTIFVLFVA 18 (75)
T ss_pred hHHHHhHHHHHHHHH
Confidence 445556778888875
No 34
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=31.12 E-value=62 Score=33.25 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHhheeeecccc
Q psy15988 636 FSTVLGLFLFLVEVAILCWVKFWDYS 661 (718)
Q Consensus 636 FSTvlGl~LFLaEvall~WVKF~~~s 661 (718)
.-.++|++||+.-=.+--|+=|||.+
T Consensus 15 ~~~v~Gi~Lf~~A~~LS~s~~FyY~s 40 (249)
T PF10225_consen 15 AQFVLGIVLFFLAPSLSRSVLFYYSS 40 (249)
T ss_pred HHHHHHHHHHHHhHHhccChhHHHhh
Confidence 46899999999999999999999976
No 35
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=31.04 E-value=65 Score=37.78 Aligned_cols=57 Identities=23% Similarity=0.422 Sum_probs=32.4
Q ss_pred CCCChhhh-hhhhhhh-hHHHHHHHHHHHHHHHHHHhheeeeccc--chh----HHHHHHHhhHhHHHH
Q psy15988 618 VSESPHER-MRGFVEL-AWAFSTVLGLFLFLVEVAILCWVKFWDY--SLR----AAIAATIIVIPVLII 678 (718)
Q Consensus 618 v~esPHeR-m~~yIEl-AW~FSTvlGl~LFLaEvall~WVKF~~~--s~~----AAiastiiliPv~iI 678 (718)
-.+|||.| |+.|-|+ .|-+-.++.+.+.+.- +.|..|+. .+. |-..+.++++|+++|
T Consensus 379 ~~~D~h~rlM~~Y~evP~WWy~~~l~is~~~~~----~~v~~~~t~lP~W~~~lal~l~~i~~iP~~~i 443 (681)
T TIGR00727 379 DYPDPHSNLMKAYKEVPDWWYLAVFLGFFGMGI----ATVEHWPTETPVWGLFVCLIFNFVFLIPTTIL 443 (681)
T ss_pred CCCChhHHHhhcCCCCcHHHHHHHHHHHHHHHH----HHHhhCCCCCCHHHHHHHHHHHHHHHHhhhhe
Confidence 46899999 5999998 5666555544444442 34444443 222 223444555565544
No 36
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=30.10 E-value=51 Score=28.70 Aligned_cols=38 Identities=29% Similarity=0.556 Sum_probs=19.8
Q ss_pred hhHhHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhccCCC
Q psy15988 671 IVIPVLIIFVVFVVHFYHNVVKYKCKTSISDMKELEDIKKKLDAGH 716 (718)
Q Consensus 671 iliPv~iIFvvFa~hFYr~Lv~hk~~~~~~~ieELe~~k~~ld~~~ 716 (718)
.++|++++|++|.+.++|.- +++.+|..++.+.|..|+
T Consensus 4 ~li~lv~~~~i~yf~~~rpq--------kk~~k~~~~m~~~Lk~Gd 41 (82)
T PF02699_consen 4 MLIPLVIIFVIFYFLMIRPQ--------KKQQKEHQEMLASLKPGD 41 (82)
T ss_dssp HHHHHHHHHHHHHHHTHHHH--------HHHHHHHTTGGG------
T ss_pred HHHHHHHHHHHHhhheecHH--------HHHHHHHHHHHHcCCCCC
Confidence 45677777777777666543 244446666777777665
No 37
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.70 E-value=2.1e+02 Score=23.03 Aligned_cols=14 Identities=21% Similarity=0.294 Sum_probs=6.4
Q ss_pred hhhhhHHHHHHHHH
Q psy15988 695 CKTSISDMKELEDI 708 (718)
Q Consensus 695 ~~~~~~~ieELe~~ 708 (718)
..+..++++++|+-
T Consensus 50 ~~~~~k~l~~le~e 63 (68)
T PF06305_consen 50 IRRLRKELKKLEKE 63 (68)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444455544443
No 38
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=27.76 E-value=4.8e+02 Score=25.61 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=38.6
Q ss_pred HhhhhhhHHHHHHHHHHHHHHhhcchhhhhhhcccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHHH
Q psy15988 579 IMFAVCTTVLVAVHIFALMISTYLLPNIEAISKLQSTKLVSESPHERMRGFVELAWAFSTVLGLFLFL 646 (718)
Q Consensus 579 i~Fav~TTvLVAVHlfALMISTcILPnIeAvsnl~nl~~v~esPHeRm~~yIElAW~FSTvlGl~LFL 646 (718)
-+++.++.+...+-.+...+++...|.+-.. .++.-+||.+.+.-.+..++.++|+++.+
T Consensus 29 ~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (342)
T TIGR00797 29 AAVSLGSSVFMFLFSILMGLGTATTALVAQA--------VGAGNYQRLGRQAQQSLLLALLLGLPVLL 88 (342)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH--------HCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666667777888888885332 22333577888877777776666655443
No 39
>PF09815 XK-related: XK-related protein; InterPro: IPR018629 This entry is represented by the multipass membrane protein XK, which may be involved in sodium-dependent transport of neutral amino acids or oligopeptides. It forms a heterodimer with Kell. In humans, Kell is an 93kDa type II membrane glycoprotein with endothelin-3-converting enzyme activity that is linked by a single disulphide bond to XK, that spans the membrane ten times. An absence of XK leads to clinical symptoms termed the McLeod syndrome [MIM:314850], an X-linked multi-system disorder characterised by late onset abnormalities in the neuromuscular and hematopoietic systems [, ].
Probab=27.40 E-value=88 Score=32.63 Aligned_cols=53 Identities=17% Similarity=0.515 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHhheeeeccc----chhHHHHHHHhhHhHHHHHHHHHHHHHH
Q psy15988 635 AFSTVLGLFLFLVEVAILCWVKFWDY----SLRAAIAATIIVIPVLIIFVVFVVHFYH 688 (718)
Q Consensus 635 ~FSTvlGl~LFLaEvall~WVKF~~~----s~~AAiastiiliPv~iIFvvFa~hFYr 688 (718)
++.+++|+++++++++.=+|+-.-++ -..+++.-+.+++|.+++.+. ...+|+
T Consensus 2 ~~~~~~s~~~y~~di~~Di~la~~Y~~~g~~~w~~~Tl~fil~psii~q~~-S~~w~~ 58 (332)
T PF09815_consen 2 LLFTVFSLLLYIADIVTDIWLAYQYFRNGDYWWFGLTLAFILLPSIIVQIF-SLRWYK 58 (332)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 36789999999999999888765544 234666667788999888873 444443
No 40
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=27.04 E-value=7.4e+02 Score=26.68 Aligned_cols=72 Identities=15% Similarity=0.186 Sum_probs=38.5
Q ss_pred hhhhhhHHHHHHHHhhccCCCCchhhhhhhcCCCCCCcchhhHhhhhhhHHHHHHHHHHHHHHhhcchhhhhhh
Q psy15988 537 TTVLVAVHIFALMISTYLLPGNDVAMVELQINEPTNVPEWLFIMFAVCTTVLVAVHIFALMISTYLLPNIEAIS 610 (718)
Q Consensus 537 tti~~~v~~~AlM~~t~i~P~~~vamVE~Q~~e~t~~P~~Lli~Fav~TTvLVAVHlfALMISTcILPnIeAvs 610 (718)
..+.|...+...+...+++| +||+-+|.....+.+.|..-. -=.....+=-.+........--++|...-..
T Consensus 32 ~~~~~~~~~~~~~~~vlllP-~Dv~~~~~~~~~~~~~~~~~~-~~~~~~~~W~~iyw~~~il~w~ilPf~~~y~ 103 (471)
T PF04791_consen 32 VKIIVFLGLTLSFSIVLLLP-LDVANNEILSSYDSSYPGQWL-NTSLMEVLWYIIYWLTFILTWLILPFAQFYY 103 (471)
T ss_pred HHHHHHHHHHHHHHHHHhcC-hhhhcccccccCCCCCCcccC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666777888 699998888766655543100 0000111112334444444556788764443
No 41
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=26.18 E-value=1.7e+02 Score=27.81 Aligned_cols=48 Identities=15% Similarity=0.265 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhhheeecc-chhHHHHHhhhhhhhhhhhhhhhhhh
Q psy15988 379 FSTVLGLFLFLVEVAILCWVKFWD-YSLRAAIAATIIVIPVLIIFVVFVVH 428 (718)
Q Consensus 379 FST~lGl~LFLvEIaLL~WVKF~~-~~~~AA~ast~iliPv~ivFv~Fa~H 428 (718)
.+.++|+++.. .++++-+.|.. .+..-+....++++-++++.++..++
T Consensus 10 ~~iilgilli~--~gI~~Lv~~~~~l~~~~s~~lg~~~lAlg~vL~~~g~~ 58 (191)
T PF04156_consen 10 ILIILGILLIA--SGIAALVLFISGLGALISFILGIALLALGVVLLSLGLL 58 (191)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34488888444 44444444433 34333333344444444555555554
No 42
>KOG3359|consensus
Probab=25.91 E-value=75 Score=37.83 Aligned_cols=25 Identities=40% Similarity=0.503 Sum_probs=20.3
Q ss_pred hHHHHHHHhhHhHHHHHHHHHHHHH
Q psy15988 663 RAAIAATIIVIPVLIIFVVFVVHFY 687 (718)
Q Consensus 663 ~AAiastiiliPv~iIFvvFa~hFY 687 (718)
..|=+-..|+||+++-...|.+||-
T Consensus 257 ~~ar~~~LI~iP~~iYl~~F~vHf~ 281 (723)
T KOG3359|consen 257 LLARLFFLIGIPFLIYLLFFYVHFS 281 (723)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566799999999999999984
No 43
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=24.86 E-value=41 Score=27.87 Aligned_cols=38 Identities=8% Similarity=0.360 Sum_probs=30.2
Q ss_pred HHhhHhHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q psy15988 669 TIIVIPVLIIFVVFVVHFYHNVVKYKCKTSISDMKELE 706 (718)
Q Consensus 669 tiiliPv~iIFvvFa~hFYr~Lv~hk~~~~~~~ieELe 706 (718)
+++++|+++++++..+-.-+.+=++.|++..+.+++-+
T Consensus 3 ~~~iV~i~iv~~lLg~~I~~~~K~ygYkht~d~~e~~~ 40 (50)
T PF12606_consen 3 AFLIVSIFIVMGLLGLSICTTLKAYGYKHTVDPLEDEP 40 (50)
T ss_pred ehHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCCc
Confidence 46788999999999888888888888888777765543
No 44
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=24.76 E-value=1.8e+02 Score=29.17 Aligned_cols=68 Identities=15% Similarity=0.194 Sum_probs=37.3
Q ss_pred CCCCChhhhh-hhhhhhhHHHHHHHHHHHHHHHHHHhheeeecccchhHHHHHHHhhHhHHHHHHHHHHHHHHh
Q psy15988 617 LVSESPHERM-RGFVELAWAFSTVLGLFLFLVEVAILCWVKFWDYSLRAAIAATIIVIPVLIIFVVFVVHFYHN 689 (718)
Q Consensus 617 ~v~esPHeRm-~~yIElAW~FSTvlGl~LFLaEvall~WVKF~~~s~~AAiastiiliPv~iIFvvFa~hFYr~ 689 (718)
.-+.-|..|+ +.||+.=|-++ +.||.++=+.|++..= .+ +...+..+++++.-+++++++=++..-|.
T Consensus 57 ~RDrGP~Rr~vRD~VDsR~~i~---e~fmP~alv~lv~~~v-~~-~~~~~~~~~~~~~~~~~~~iid~~~l~r~ 125 (170)
T PF11241_consen 57 PRDRGPVRRYVRDYVDSRRNIG---EFFMPVALVLLVLSFV-VP-SPQVQLYVTLAMYVLLLLVIIDGVILGRR 125 (170)
T ss_pred cccccchhhhhhhhhhcccchH---HHHHHHHHHHHHHHHH-cc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788887 89999999654 4455555444444332 22 23344444444444555555444444443
No 45
>KOG1962|consensus
Probab=24.70 E-value=1.6e+02 Score=30.65 Aligned_cols=74 Identities=19% Similarity=0.157 Sum_probs=45.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhcccchhhhhcccccccc---cCCchhhh--hhHHHHHHHHH----HHHHHHHHH
Q psy15988 319 WLFIMFAVCTTVLVAVHIFALMISTYLLPNIEAISKLQSTKLV---SESPHERM--RGFVELAWAFS----TVLGLFLFL 389 (718)
Q Consensus 319 ~LlI~favcTtllvaVhl~aLMISTcILPnIeav~nvh~ls~v---~eSPHerm--~~~iE~aW~FS----T~lGl~LFL 389 (718)
+++..+..-+.--...|.+++.++..++..|+++-+++..++. ..||-..- ....+.+=.-+ |..|..|||
T Consensus 30 ~~~~~~~~~~~~~~~~~~i~~~~~villlfiDsvr~i~~~~~~~~~~~n~~~~~~a~~~~~~~l~raqrn~YisGf~LFL 109 (216)
T KOG1962|consen 30 KIFKDRLKSGLAPQVLKTIATTMIVILLLFIDSVRRIQKYVSEYGSMANPTDQPLARTHLLEALFRAQRNLYISGFVLFL 109 (216)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCccchHHHHHHHHHHHHHHhhhHHhHHHHHH
Confidence 3555556666667788999999999999999998888765552 23332221 11122111112 677888777
Q ss_pred HHH
Q psy15988 390 VEV 392 (718)
Q Consensus 390 vEI 392 (718)
.-|
T Consensus 110 ~lv 112 (216)
T KOG1962|consen 110 SLV 112 (216)
T ss_pred HHH
Confidence 543
No 46
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=24.67 E-value=1.7e+02 Score=26.11 Aligned_cols=73 Identities=18% Similarity=0.388 Sum_probs=42.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHH-HHH-------Hhheeeecccc---hhHHHHHHHhhHhHHHHHHHHHHHHHHhhh
Q psy15988 623 HERMRGFVELAWAFSTVLGLFLFLV-EVA-------ILCWVKFWDYS---LRAAIAATIIVIPVLIIFVVFVVHFYHNVV 691 (718)
Q Consensus 623 HeRm~~yIElAW~FSTvlGl~LFLa-Eva-------ll~WVKF~~~s---~~AAiastiiliPv~iIFvvFa~hFYr~Lv 691 (718)
..|....+-..|+++.++++..++. +.. ..|+..+-... ..........++|+.++++. -++.++.+-
T Consensus 98 ~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~i~~~~~ 176 (257)
T PF00001_consen 98 RRRARIIIILIWIISFLISLPPLFFSWVYFVSDGSQSFCFIDFSSSSSQIYFIYFFIVFFILPLIIILIC-YIRILRKLR 176 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCCCEEEEESCSSSHHHHHHHHHHHHHTHHHHHHHHHH-HHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeeee-ccccccccc
Confidence 3456677888999998888777654 111 13444444332 23334444566777766554 356666666
Q ss_pred hhhhh
Q psy15988 692 KYKCK 696 (718)
Q Consensus 692 ~hk~~ 696 (718)
+++..
T Consensus 177 ~~~~~ 181 (257)
T PF00001_consen 177 RQRKR 181 (257)
T ss_dssp HHHHC
T ss_pred ccccc
Confidence 55543
No 47
>KOG4220|consensus
Probab=24.45 E-value=1.9e+02 Score=33.34 Aligned_cols=74 Identities=23% Similarity=0.364 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHh---------heeeeccc-chhHHHHHHHhhHhHHHHHHHHHHHHHHhhhhhhhhhhh
Q psy15988 630 VELAWAFSTVLGLFLFLVEVAIL---------CWVKFWDY-SLRAAIAATIIVIPVLIIFVVFVVHFYHNVVKYKCKTSI 699 (718)
Q Consensus 630 IElAW~FSTvlGl~LFLaEvall---------~WVKF~~~-s~~AAiastiiliPv~iIFvvFa~hFYr~Lv~hk~~~~~ 699 (718)
|-.||++|+++=..-.+.==-+. |+++|+.. ..+-+.|-.+.-+||.|+-+. -.|-+....
T Consensus 151 I~~AW~iSfiLWaPaIl~WqyivGkrTv~~~eC~iQFlsnp~iTfGTAiAAFYlPVtiM~~L---------Y~rIyret~ 221 (503)
T KOG4220|consen 151 IGAAWVLSFVLWAPAILFWQYIVGKRTVPDGECYIQFLSNPAITFGTAIAAFYLPVTIMTIL---------YWRIYRETR 221 (503)
T ss_pred HHHHHHHHHHHHHHHHHhhHhheeeeecCCCceEEEeecCceeehhHHHHHHHhhHHHHHHH---------HHHHHHHHH
Q ss_pred HHHHHHHHHHhhc
Q psy15988 700 SDMKELEDIKKKL 712 (718)
Q Consensus 700 ~~ieELe~~k~~l 712 (718)
++.+|+++++..+
T Consensus 222 kR~k~~~~lq~s~ 234 (503)
T KOG4220|consen 222 KRQKELAKLQASL 234 (503)
T ss_pred HHHHhhhhccccc
No 48
>COG3402 Uncharacterized conserved protein [Function unknown]
Probab=23.15 E-value=1.2e+02 Score=30.58 Aligned_cols=81 Identities=15% Similarity=0.211 Sum_probs=38.9
Q ss_pred CChhhhhhhhhhhhHHH--HHHHHHHHHHHHHHHhheeeecccchhHHHHHHHhhHhHHHHHHHHHHH-HHHhhhhhhhh
Q psy15988 620 ESPHERMRGFVELAWAF--STVLGLFLFLVEVAILCWVKFWDYSLRAAIAATIIVIPVLIIFVVFVVH-FYHNVVKYKCK 696 (718)
Q Consensus 620 esPHeRm~~yIElAW~F--STvlGl~LFLaEvall~WVKF~~~s~~AAiastiiliPv~iIFvvFa~h-FYr~Lv~hk~~ 696 (718)
++|-++...=+-.+|.. .+.+.++|.++-++.+.|.-|-.-.+...+++ ++++-++.++-+|+++ .||-. .+.++
T Consensus 3 ~~~m~~~s~k~~~vw~~~~~i~~~l~Ll~av~~~~~~~~~~~~~~w~~~a~-~av~l~~~vv~l~iiP~~~Ryr-~wry~ 80 (161)
T COG3402 3 ENPMNPLSKKVLTVWRVQEWIPIALVLLIAVAAGVLLYFVGLDPNWSSVAA-VAVILLAAVVTLFIIPQLVRYR-VWRYE 80 (161)
T ss_pred ccccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHheeccCCccHHHHH-HHHHHHHHHHHhhhhhHHHhhh-hheee
Confidence 34555555556667753 34444444444444444433332222222332 3334456667777777 35543 34555
Q ss_pred hhhHHH
Q psy15988 697 TSISDM 702 (718)
Q Consensus 697 ~~~~~i 702 (718)
.+.++|
T Consensus 81 v~~~el 86 (161)
T COG3402 81 VEEDEL 86 (161)
T ss_pred cccceE
Confidence 555544
No 49
>KOG3722|consensus
Probab=23.05 E-value=73 Score=36.32 Aligned_cols=43 Identities=23% Similarity=0.369 Sum_probs=33.4
Q ss_pred ecCCCCCCch--hhhhhhhhHHHHHHHHHHHHHHHhhcccchhhh
Q psy15988 310 INEPTNVPEW--LFIMFAVCTTVLVAVHIFALMISTYLLPNIEAI 352 (718)
Q Consensus 310 L~~~t~~P~~--LlI~favcTtllvaVhl~aLMISTcILPnIeav 352 (718)
++.+--+|-. ++.+-..|+.++|+||.+||+|----+|--++-
T Consensus 337 ~eRnlvyP~am~lLLv~T~~SvLlVa~NtL~LLi~e~AlP~~trg 381 (538)
T KOG3722|consen 337 WERNLVYPLAMLLLLVLTTCSVLLVATNTLELLIGERALPVYTQG 381 (538)
T ss_pred HHHhhhhHHHHHHHHHHhhhHHHHHHHhHHHHHhCcccCcccccc
Confidence 3445556642 455677889999999999999999999988884
No 50
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=23.03 E-value=4.6e+02 Score=25.73 Aligned_cols=43 Identities=28% Similarity=0.159 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhhcccchhh---------hhccccccc--ccCCchhhhh
Q psy15988 328 TTVLVAVHIFALMISTYLLPNIEA---------ISKLQSTKL--VSESPHERMR 370 (718)
Q Consensus 328 TtllvaVhl~aLMISTcILPnIea---------v~nvh~ls~--v~eSPHerm~ 370 (718)
|+-|++.-.+|+||.+++.-.-.| ++|+..-.. ..=|||.-|-
T Consensus 38 t~aL~ls~~l~~mig~yl~~~~rr~~~rPED~~daEI~dgAGe~GfFsP~SwWP 91 (137)
T PF12270_consen 38 TVALVLSGGLALMIGFYLRFTARRIGPRPEDREDAEIADGAGELGFFSPHSWWP 91 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccccccCCCCcCcCCCccHhH
Confidence 457888999999999998655444 666655444 4569997653
No 51
>PHA03235 DNA packaging protein UL33; Provisional
Probab=22.65 E-value=9.2e+02 Score=26.19 Aligned_cols=23 Identities=13% Similarity=0.008 Sum_probs=17.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHH
Q psy15988 623 HERMRGFVELAWAFSTVLGLFLF 645 (718)
Q Consensus 623 HeRm~~yIElAW~FSTvlGl~LF 645 (718)
..|-...|-..|++|.++++..+
T Consensus 145 ~~~a~~ii~~iWi~sll~s~P~~ 167 (409)
T PHA03235 145 YRSTYKILGLTWFASLICSGPAP 167 (409)
T ss_pred cchhhhhHHHHHHHHHHHHHHHH
Confidence 34555667788999999998643
No 52
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=21.46 E-value=89 Score=28.75 Aligned_cols=39 Identities=23% Similarity=0.556 Sum_probs=31.3
Q ss_pred hhhhhhhhhhhhhhhhhhhhcccccccccchhhhHHHHHHHHhhhcC
Q psy15988 412 TIIVIPVLIIFVVFVVHFYHNVVKYKCKTSISDMKELEDIKKKLDAG 458 (718)
Q Consensus 412 t~iliPv~ivFv~Fa~HFYrsLv~hK~e~~~~~i~eLe~~~~qLDaG 458 (718)
...++|++++|++|.+-.+|- |.+.++|-++|.+.|..|
T Consensus 9 ~~~ll~~vl~~~ifyFli~RP--------QrKr~K~~~~ml~sL~kG 47 (97)
T COG1862 9 LVLLLPLVLIFAIFYFLIIRP--------QRKRMKEHQELLNSLKKG 47 (97)
T ss_pred HHHHHHHHHHHHHHHHhhcCH--------HHHHHHHHHHHHHhccCC
Confidence 345678888888888887774 667788888999999888
No 53
>PF12045 DUF3528: Protein of unknown function (DUF3528); InterPro: IPR021918 This domain of unknown function is found at the N terminus of some Homeobox proteins belonging to the ABD-B family. It is found in association with PF00046 from PFAM.
Probab=21.36 E-value=58 Score=32.11 Aligned_cols=30 Identities=37% Similarity=0.474 Sum_probs=23.4
Q ss_pred cccccccccccccccccccc-chhhhhhhcc
Q psy15988 109 KKSFTSADLSRTVTHPYSRT-QSVQSLRDVS 138 (718)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (718)
+-||-+.--||.+|-|||-. .-||..|+|+
T Consensus 6 ~~sFLpq~sS~~mtypYsSNLpQVqpVREVa 36 (143)
T PF12045_consen 6 LPSFLPQPSSCQMTYPYSSNLPQVQPVREVA 36 (143)
T ss_pred cccccCCCCCCccccccCCCccccCccceec
Confidence 34666677799999999942 3589999998
No 54
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=21.19 E-value=2.3e+02 Score=28.85 Aligned_cols=30 Identities=7% Similarity=-0.062 Sum_probs=20.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhheeeec
Q psy15988 629 FVELAWAFSTVLGLFLFLVEVAILCWVKFW 658 (718)
Q Consensus 629 yIElAW~FSTvlGl~LFLaEvall~WVKF~ 658 (718)
-+.--|.++++++++.|+.-.+++.|.=|.
T Consensus 27 ~~~~l~~~~~~~~~ii~v~v~~~~~~~~~r 56 (226)
T TIGR01433 27 EERSLILTAFGLMLLVVIPVILMTLFFAWK 56 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHheeeEE
Confidence 344556677788888888877777766543
No 55
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=21.14 E-value=3.6e+02 Score=31.31 Aligned_cols=142 Identities=21% Similarity=0.223 Sum_probs=79.7
Q ss_pred hhhHHHHHHHHhhccCCCCchhhhhhhcCCCCCCcchhhHhhhh-hhHHHHHHHHHHHHHHhhcchhhhhhhcccccCCC
Q psy15988 540 LVAVHIFALMISTYLLPGNDVAMVELQINEPTNVPEWLFIMFAV-CTTVLVAVHIFALMISTYLLPNIEAISKLQSTKLV 618 (718)
Q Consensus 540 ~~~v~~~AlM~~t~i~P~~~vamVE~Q~~e~t~~P~~Lli~Fav-~TTvLVAVHlfALMISTcILPnIeAvsnl~nl~~v 618 (718)
..+.++.+-..|+-++-.||-|+.|.-.+-....| -|++ |+-.+|+--+--+..|+|---.|-+.-. .-.+-+
T Consensus 18 ~~a~s~a~g~~g~~lLa~in~al~e~~~~~~~~l~-----~f~~llllf~~ss~is~lg~t~~gq~~I~klr~-~~~~ki 91 (546)
T COG4615 18 VMALSLASGALGIGLLAFINQALIETADTSLLVLP-----EFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRS-EFIKKI 91 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 34566677777888888899999987644443333 3433 3333333334445555555444322211 001234
Q ss_pred CCChhhhhhhhhh-------------hhHHHH----HHHHHHHHHHHHHHhheeeecccchhHHHHHHHhhHhHHHHHHH
Q psy15988 619 SESPHERMRGFVE-------------LAWAFS----TVLGLFLFLVEVAILCWVKFWDYSLRAAIAATIIVIPVLIIFVV 681 (718)
Q Consensus 619 ~esPHeRm~~yIE-------------lAW~FS----TvlGl~LFLaEvall~WVKF~~~s~~AAiastiiliPv~iIFvv 681 (718)
-+-|.+|+.++=+ ....|| .+-+++||+..++-+||.. . -+..+-|..|-|.
T Consensus 92 l~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLS-----p------~mf~l~vV~ivv~ 160 (546)
T COG4615 92 LDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLS-----P------KMFLLTVVWIVVT 160 (546)
T ss_pred hcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhh-----H------HHHHHHHHHHHHH
Confidence 4667777655422 133444 5678999999999888752 1 1233444455566
Q ss_pred HHHHHHHhhhhhhhhhh
Q psy15988 682 FVVHFYHNVVKYKCKTS 698 (718)
Q Consensus 682 Fa~hFYr~Lv~hk~~~~ 698 (718)
+..+|.+-...||.-+.
T Consensus 161 ~~~~~~~m~rv~k~~~a 177 (546)
T COG4615 161 IWGGFVLMARVYKHMAA 177 (546)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66777776666665443
No 56
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=21.11 E-value=1.1e+02 Score=27.09 Aligned_cols=15 Identities=33% Similarity=0.684 Sum_probs=10.2
Q ss_pred hhhhhhhhhhhhhhh
Q psy15988 413 IIVIPVLIIFVVFVV 427 (718)
Q Consensus 413 ~iliPv~ivFv~Fa~ 427 (718)
.++++.+++|++|..
T Consensus 4 ~fl~~plivf~ifVa 18 (75)
T PF06667_consen 4 EFLFVPLIVFMIFVA 18 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456667777777764
No 57
>KOG0307|consensus
Probab=20.99 E-value=5.4e+02 Score=32.33 Aligned_cols=46 Identities=24% Similarity=0.364 Sum_probs=24.5
Q ss_pred CcccccccCCCCCCCCCCC-CCCCCC-CCCCCCcccCCCCCCccccCC
Q psy15988 154 TPTTLLSKQGSHPLTPSSR-YPTTPT-SGGHNPSYSSSGSEASIEPRT 199 (718)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~rt 199 (718)
+|....-.|-.+-.||..+ +|++|+ +-||-+.|+.+...-.--+.+
T Consensus 795 ~p~~~s~~~p~~~stP~~~~~~~~P~~~~~~~~~~~~~~~~~~S~p~~ 842 (1049)
T KOG0307|consen 795 TPAPQSNARPNSASTPTPPAFSFTPPPSSGAADQYSQPPAAPPSFPYA 842 (1049)
T ss_pred CCCCcCCCCCCCCCCCCCCCcCCCCCCcccccccCCCCCCCCccCCCC
Confidence 4444444455555555544 456666 367767776665444334443
No 58
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=20.40 E-value=1.1e+02 Score=28.77 Aligned_cols=39 Identities=21% Similarity=0.392 Sum_probs=27.2
Q ss_pred hhhhhhhhhhhhhhhhhhhhcccccccccchhhhHHHHHHHHhhhcC
Q psy15988 412 TIIVIPVLIIFVVFVVHFYHNVVKYKCKTSISDMKELEDIKKKLDAG 458 (718)
Q Consensus 412 t~iliPv~ivFv~Fa~HFYrsLv~hK~e~~~~~i~eLe~~~~qLDaG 458 (718)
...++|++++|++|.+-++|- +.+..+|.++|.++|..|
T Consensus 4 ~~~ll~lv~i~~i~yF~~iRP--------QkKr~K~~~~m~~~Lk~G 42 (109)
T PRK05886 4 LVLFLPFLLIMGGFMYFASRR--------QRKAMQATIDLHESLQPG 42 (109)
T ss_pred HHHHHHHHHHHHHHHHHHccH--------HHHHHHHHHHHHHhcCCC
Confidence 345677777887777655543 445567778888999888
No 59
>cd03499 SQR_TypeC_SdhC Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase C (SdhC) subunit; composed of bacterial SdhC and eukaryotic large cytochrome b binding (CybL) proteins. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Members of this family reduce high potential quinones such as ubiquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Proteins in this subfamily are classified as Type C SQRs because they contain two transmembrane subunits and one heme group. The heme and quinone binding sites reside in the transmembrane subunits. The SdhC or CybL protein is one of the two transmembrane subunits of bacterial and eukaryotic SQRs. The two-electron oxidation of succinate in the flavoprotein a
Probab=20.12 E-value=2.1e+02 Score=25.54 Aligned_cols=66 Identities=23% Similarity=0.274 Sum_probs=38.1
Q ss_pred CCchhhh-hhHHHHHHHHHH---HHHHHHHHHHHHHhhheeeccc---hhHH--H-HHhhhhhhhhhhhhhhhhhhhh
Q psy15988 363 ESPHERM-RGFVELAWAFST---VLGLFLFLVEVAILCWVKFWDY---SLRA--A-IAATIIVIPVLIIFVVFVVHFY 430 (718)
Q Consensus 363 eSPHerm-~~~iE~aW~FST---~lGl~LFLvEIaLL~WVKF~~~---~~~A--A-~ast~iliPv~ivFv~Fa~HFY 430 (718)
.|||-.. ++ ...|++|. ..|+.+|+.-...+.|...... ++.. + .....+-+=..+++.+|++|+.
T Consensus 3 ~sphl~iY~~--~~~~~~Si~hRiSGv~L~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~yH~~ 78 (117)
T cd03499 3 LSPHLTIYRP--PLTAILSILHRITGVALFLGLPLLLWWLLASLSSPESFESVSALLGSWLGKLVLFGLTWALFYHLL 78 (117)
T ss_pred CCCccccccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4787633 43 34788877 7888888887777777766522 2221 1 1222222223455666777865
Done!