Query psy15988
Match_columns 718
No_of_seqs 95 out of 97
Neff 2.2
Searched_HMMs 13730
Date Fri Aug 16 18:06:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15988.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15988hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nekc_ f.21.2.2 (C:) Succinat 20.5 38 0.0028 27.7 3.7 42 362-404 10-54 (129)
2 d2a90a2 d.289.1.1 (A:132-211) 14.8 20 0.0015 27.2 0.6 19 84-102 62-80 (80)
3 d1prtf_ b.40.2.1 (F:) Pertussi 7.8 65 0.0047 26.3 1.3 16 88-103 68-83 (98)
4 d1vp7a_ a.7.13.1 (A:) Exonucle 6.0 1.2E+02 0.009 23.0 2.0 20 698-717 8-27 (68)
5 d1q7sa_ c.131.1.1 (A:) Bit1 (C 5.7 1.1E+02 0.0083 25.0 1.8 42 432-473 48-89 (117)
6 d1u19a_ f.13.1.2 (A:) Rhodopsi 5.5 2.6E+02 0.019 23.2 4.2 26 612-637 13-38 (348)
7 d1okca_ f.42.1.1 (A:) ADP,ATP 5.4 5.9E+02 0.043 21.0 6.5 69 332-400 10-87 (292)
8 d1y7ea1 b.49.3.1 (A:101-233) P 5.1 97 0.0071 25.9 1.0 14 458-471 23-36 (133)
9 d2hyda2 f.37.1.1 (A:1-323) Put 5.1 5.6E+02 0.041 20.4 5.9 14 641-654 145-158 (323)
10 d2ovrb1 a.158.1.1 (B:2263-2364 4.7 1.7E+02 0.012 21.5 2.1 17 272-288 84-100 (102)
No 1
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=20.51 E-value=38 Score=27.69 Aligned_cols=42 Identities=14% Similarity=-0.023 Sum_probs=30.9
Q ss_pred cCCchhhhhhHHHHHHHHHH---HHHHHHHHHHHHHhhheeeccch
Q psy15988 362 SESPHERMRGFVELAWAFST---VLGLFLFLVEVAILCWVKFWDYS 404 (718)
Q Consensus 362 ~eSPHerm~~~iE~aW~FST---~lGl~LFLvEIaLL~WVKF~~~~ 404 (718)
-.|||---- +-...|++|- ..|+.+|..-..++.|......+
T Consensus 10 P~sPhL~iy-k~~~t~~~SI~HRisGv~l~~~~~~~~~~l~~~~~~ 54 (129)
T d1nekc_ 10 PVNLDLQTI-RFPITAIASILHRVSGVITFVAVGILLWLLGTSLSS 54 (129)
T ss_dssp CBCCCGGGS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCccee-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 468886552 2377888888 88999998888888787766554
No 2
>d2a90a2 d.289.1.1 (A:132-211) Deltex (Dx) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=14.80 E-value=20 Score=27.25 Aligned_cols=19 Identities=47% Similarity=0.753 Sum_probs=15.8
Q ss_pred CCCCCceeeecCCCCCCCC
Q psy15988 84 SGLERPILRVNTSPYPATK 102 (718)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~ 102 (718)
+|-.|||-|+...|||.-|
T Consensus 62 tg~~R~IrR~~~~~~p~~~ 80 (80)
T d2a90a2 62 SGPMRSIRRTQQAPYPLVK 80 (80)
T ss_dssp TCCEEEEEEEECCCCCEEC
T ss_pred CCCEEeeEecCCCCCCccC
Confidence 4567999999999999754
No 3
>d1prtf_ b.40.2.1 (F:) Pertussis toxin S5 subunit {Bordetella pertussis [TaxId: 520]}
Probab=7.84 E-value=65 Score=26.26 Aligned_cols=16 Identities=56% Similarity=0.908 Sum_probs=12.8
Q ss_pred CceeeecCCCCCCCCC
Q psy15988 88 RPILRVNTSPYPATKG 103 (718)
Q Consensus 88 ~~~~~~~~~~~~~~~~ 103 (718)
|--|.|..||||.|.|
T Consensus 68 rialtvedspypgtpg 83 (98)
T d1prtf_ 68 RIALTVEDSPYPGTPG 83 (98)
T ss_dssp CEEEEECCCSSSSSCE
T ss_pred ceEEEecCCCCCCCCc
Confidence 4458899999997766
No 4
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=5.97 E-value=1.2e+02 Score=22.97 Aligned_cols=20 Identities=20% Similarity=0.400 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHhhccCCCC
Q psy15988 698 SISDMKELEDIKKKLDAGHV 717 (718)
Q Consensus 698 ~~~~ieELe~~k~~ld~~~~ 717 (718)
..+.|++|+++-++|++|++
T Consensus 8 fEe~l~~LE~IV~~LE~g~l 27 (68)
T d1vp7a_ 8 FETALAELESLVSAMENGTL 27 (68)
T ss_dssp HHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 45778999999999999986
No 5
>d1q7sa_ c.131.1.1 (A:) Bit1 (Cgi-147) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.70 E-value=1.1e+02 Score=25.03 Aligned_cols=42 Identities=7% Similarity=-0.133 Sum_probs=36.5
Q ss_pred cccccccccchhhhHHHHHHHHhhhcCCcccccccccccccc
Q psy15988 432 NVVKYKCKTSISDMKELEDIKKKLDAGHVLYKNHSRRDLGHH 473 (718)
Q Consensus 432 sLv~hK~e~~~~~i~eLe~~~~qLDaGHVlY~~w~drdll~~ 473 (718)
.-..+|.=..+.+-+||+++.++.+.-++.+.-|+|-++.+.
T Consensus 48 ~~g~~KIvl~v~~e~~l~~l~~~a~~~~l~~~~i~DAG~Tei 89 (117)
T d1q7sa_ 48 YCGQPKVVVKAPDEETLIALLAHAKMLGLTVSLIQDAGRTQI 89 (117)
T ss_dssp HTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEEEECSSSSE
T ss_pred HCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEEEEcCCCccc
Confidence 445577778889999999999999999999999999998865
No 6
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.54 E-value=2.6e+02 Score=23.21 Aligned_cols=26 Identities=27% Similarity=0.476 Sum_probs=19.9
Q ss_pred ccccCCCCCChhhhhhhhhhhhHHHH
Q psy15988 612 LQSTKLVSESPHERMRGFVELAWAFS 637 (718)
Q Consensus 612 l~nl~~v~esPHeRm~~yIElAW~FS 637 (718)
.+|...+.++|.|+-+.|..--|.++
T Consensus 13 ~~n~t~~~~~~~~~~~~~~~~~~~~~ 38 (348)
T d1u19a_ 13 FSNKTGVVRSPFEAPQYYLAEPWQFS 38 (348)
T ss_dssp SCCTTSCCCCTTTSCCTTTSCHHHHH
T ss_pred CCCCCCCcCCCCCCCccccccHHHHH
Confidence 35556677999999999998888654
No 7
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]}
Probab=5.39 E-value=5.9e+02 Score=20.97 Aligned_cols=69 Identities=13% Similarity=-0.036 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhhcccchhhhhccccccc---------ccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhheee
Q psy15988 332 VAVHIFALMISTYLLPNIEAISKLQSTKL---------VSESPHERMRGFVELAWAFSTVLGLFLFLVEVAILCWVKF 400 (718)
Q Consensus 332 vaVhl~aLMISTcILPnIeav~nvh~ls~---------v~eSPHerm~~~iE~aW~FST~lGl~LFLvEIaLL~WVKF 400 (718)
+++..+|-+++++++=-+|.+--..++.. -..+...-++.....++..+..-|+..-++..++-..+.|
T Consensus 10 ~laG~~a~~i~~~~~~Pld~iK~r~Q~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~l~~~~~~~~~~~ 87 (292)
T d1okca_ 10 FLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNF 87 (292)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCCCCcccccCCHHHHHHHHHHhhhhhhhhhccchhhhhhhcccchhH
Confidence 45666788888888888887532222222 1223333344555566666655555555554444444443
No 8
>d1y7ea1 b.49.3.1 (A:101-233) Probable aminopeptidase ApeA {Borrelia burgdorferi [TaxId: 139]}
Probab=5.10 E-value=97 Score=25.87 Aligned_cols=14 Identities=14% Similarity=0.076 Sum_probs=13.0
Q ss_pred CCcccccccccccc
Q psy15988 458 GHVLYKNHSRRDLG 471 (718)
Q Consensus 458 GHVlY~~w~drdll 471 (718)
|+.++.+|-||||.
T Consensus 23 GG~l~~tW~DRdL~ 36 (133)
T d1y7ea1 23 GGIKKYQWLSTPLS 36 (133)
T ss_dssp SSCCGGGGTTCCEE
T ss_pred CCeeeccccCCCce
Confidence 88999999999997
No 9
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=5.06 E-value=5.6e+02 Score=20.41 Aligned_cols=14 Identities=7% Similarity=0.422 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHhhe
Q psy15988 641 GLFLFLVEVAILCW 654 (718)
Q Consensus 641 Gl~LFLaEvall~W 654 (718)
+++.+++-+.+++|
T Consensus 145 ~~~~~i~~~~~l~~ 158 (323)
T d2hyda2 145 DCITIIIALSIMFF 158 (323)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhh
Confidence 33444444444444
No 10
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.74 E-value=1.7e+02 Score=21.50 Aligned_cols=17 Identities=6% Similarity=0.227 Sum_probs=13.7
Q ss_pred ccchhhhhhhhhHHHHH
Q psy15988 272 SEGLVWRRLHMSRAKLK 288 (718)
Q Consensus 272 ~~~lsWRrl~LsRaKLK 288 (718)
.....||++|+.|-.|+
T Consensus 84 ~~~~~WK~~Y~~~~~l~ 100 (102)
T d2ovrb1 84 FIHSPWKSAYIRQHRID 100 (102)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHh
Confidence 45678999999887775
Done!