RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15988
         (718 letters)



>d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9,
           Nqo9 {Thermus thermophilus [TaxId: 274]}
          Length = 154

 Score = 28.3 bits (62), Expect = 1.8
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 6/59 (10%)

Query: 227 CHQCQHSPPTWSPYILPMNTDHHPRLYKNHSRRDLGHHYEELPEDSEGLVWRRLHMSRA 285
           C  C+ + PT     + +  D       ++   DL +  E++  D  G   +R    R 
Sbjct: 76  CGLCEEACPT---GAIVLGYDFE---MADYEYSDLVYGKEDMLVDVVGTKPQRREAKRT 128


>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex
           cytochrome b subunit, FrdC {Wolinella succinogenes
           [TaxId: 844]}
          Length = 254

 Score = 28.8 bits (64), Expect = 2.0
 Identities = 17/138 (12%), Positives = 36/138 (26%), Gaps = 15/138 (10%)

Query: 301 AMVAMVELQINEPTNVPEWLFIMFAVCTTVLVAVHIFALMISTYLLPNIEAISKLQSTKL 360
            +    EL        P  +    A     +   H F  M           I+  Q    
Sbjct: 60  WVTKKFELDFIFEGGKP-IVVSFLAAFVFAVFIAHAFLAMRKF-------PINYRQYLTF 111

Query: 361 VSESPHERMRGFVELAWAFSTVLGLFLFLV----EVAILCWVKFWDYSLRAAIAATIIVI 416
            +      MR      W    + G  +F +       ++   +       +    +  + 
Sbjct: 112 KTHKD--LMRHGDTTLWWIQAMTGFAMFFLGSVHLYIMMTQPQTIGPVSSSFRMVSEWMW 169

Query: 417 PVLIIFVVFVV-HFYHNV 433
           P+ ++ +  V  H    +
Sbjct: 170 PLYLVLLFAVELHGSVGL 187


>d2a90a2 d.289.1.1 (A:132-211) Deltex (Dx) {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 80

 Score = 26.1 bits (57), Expect = 4.3
 Identities = 9/19 (47%), Positives = 10/19 (52%)

Query: 84  SGLERPILRVNTSPYPATK 102
           SG  R I R   +PYP  K
Sbjct: 62  SGPMRSIRRTQQAPYPLVK 80


>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease
           protein MalG {Escherichia coli [TaxId: 562]}
          Length = 290

 Score = 27.3 bits (59), Expect = 7.1
 Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 401 WDYSLRAAIAATIIVIPVLIIFVVFVVHF 429
           + +   AA AA +  +P+ I+F++     
Sbjct: 252 YLWGDFAA-AAVMSALPITIVFLLAQRWL 279



 Score = 27.3 bits (59), Expect = 7.1
 Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 658 WDYSLRAAIAATIIVIPVLIIFVVFVVHF 686
           + +   AA AA +  +P+ I+F++     
Sbjct: 252 YLWGDFAA-AAVMSALPITIVFLLAQRWL 279


>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human
           (Homo sapiens), E2 T [TaxId: 9606]}
          Length = 154

 Score = 26.4 bits (57), Expect = 8.9
 Identities = 17/139 (12%), Positives = 34/139 (24%), Gaps = 7/139 (5%)

Query: 445 MKELEDIKKKLDAGHVLYKNHSRRDLGHHFEELPED---SEGLVWRRLHMSRAKLKATAT 501
            +EL  +  +   G   +++  + D          +    +G+    + +          
Sbjct: 8   KRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQ 67

Query: 502 TSELLSGFAMVAMVELQINEPTNVPEWLFIMFAVCTTVLVAVHIFALMISTYLL-PGNDV 560
              L   +        +I                     V   I  LM       P    
Sbjct: 68  IRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMAD 127

Query: 561 AMVELQINEPT---NVPEW 576
              E + N+P    N  +W
Sbjct: 128 ISSEFKYNKPAFLKNARQW 146


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,581,394
Number of extensions: 115948
Number of successful extensions: 265
Number of sequences better than 10.0: 1
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 25
Length of query: 718
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 626
Effective length of database: 1,144,436
Effective search space: 716416936
Effective search space used: 716416936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.1 bits)