RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15989
(363 letters)
>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic
resolution, hydrolase/hydrolase inhibitor complex; 1.20A
{Pontastacus leptodactylus} SCOP: b.47.1.2
Length = 237
Score = 139 bits (353), Expect = 1e-39
Identities = 58/236 (24%), Positives = 86/236 (36%), Gaps = 57/236 (24%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G G++P+ ++ T + CG S+ + NY ITA HCV Y+ P L I
Sbjct: 4 GTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENP---SGLQI 60
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
G+ +EG Q V ++ ++ F+ + DI+LL+LS + ++ V P+ L
Sbjct: 61 VAGELDMS--VNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALP 118
Query: 142 --------------W----DDSTAPLQLSAVE----GTSVCNGDSGGGMVFKIDS---AW 176
W + P L V C D G + DS A
Sbjct: 119 EQGHTATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADYGADEIL--DSMICAG 176
Query: 177 YLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
G D+ C GDSGG + + YL GIVS
Sbjct: 177 VPEGGK------------DS------------CQGDSGGPLAASDTGSTYLAGIVS 208
Score = 81.1 bits (201), Expect = 5e-18
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 11/115 (9%)
Query: 250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRD 309
V ++ ++ F+ + DI+LL+LS + ++ V P+ L + D
Sbjct: 75 QIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQGHTA-------TGD 127
Query: 310 GTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
V GWG E + L+ +P+VS + C + + D CAG
Sbjct: 128 VIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDC---RADYGADEILDSMICAGVPE 179
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen,
secreted, protease, hydrolase, polymorphism,
glycoprotein, gamma-carboxyglutamic acid; HET: BI7;
1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A*
2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D
2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B*
1lqd_B* 1nfu_A* 1nfw_A* ...
Length = 241
Score = 136 bits (346), Expect = 2e-38
Identities = 59/227 (25%), Positives = 91/227 (40%), Gaps = 43/227 (18%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
GQ+ G+ PW L E CGG+++S Y++TAAHC+ + +
Sbjct: 4 GQECKDGECPWQALLINEEN---EGFCGGTILSEFYILTAAHCLY--------QAKRFKV 52
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
+G + Q +EGG +V+ V + F Y DIA+L+L + + + M V P CL
Sbjct: 53 RVGDRNTEQ--EEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 143 DDSTAPLQLSAVEGTSVCNGDSG-GGMVFKIDSAWYLRG----IVSITVARDGLRVCDTK 197
+ A L + V SG G K + + L+ V C
Sbjct: 111 ERDWAESTLMTQKTGIV----SGFGRTHEKGEQSTRLKMLEVPYVD-------RNSCKLS 159
Query: 198 HYVVFTDVANV------------CNGDSGGGMVFKIDSAWYLRGIVS 232
+ T N+ C GDSGG V + +++ GIVS
Sbjct: 160 SSFIITQ--NMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVS 204
Score = 92.7 bits (231), Expect = 4e-22
Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
Query: 250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRD 309
+V+ V + F Y DIA+L+L + + + M V P CL + A L +
Sbjct: 67 AVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMT--QKT 124
Query: 310 GTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
G V G+G E S LKM +P V C S+ + FCAG+
Sbjct: 125 GIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSSSFII----TQNMFCAGYDT 175
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood
coagulation, BLOO clotting, convertion of fibrinogen to
fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB:
1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H*
1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H*
1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Length = 259
Score = 136 bits (345), Expect = 3e-38
Identities = 71/235 (30%), Positives = 105/235 (44%), Gaps = 37/235 (15%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G G PW V L+R L +CG SL+S +V+TAAHC+ P+DK + L++
Sbjct: 4 GSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLV 61
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS-NYLGDIALLQLSSDVDYSMYVRPVCL 141
+GK+ + + + + +++++I+P +N N DIAL++L V +S Y+ PVCL
Sbjct: 62 RIGKHSRTR-YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 142 WDDSTAPLQLSAVEGTSVC------NGDSGGGMVFKIDSAWYLRGI-VSITVARDGLRVC 194
D TA L A G N L+ + + I V R VC
Sbjct: 121 PDRETAASLLQA--GYK-GRVTGWGNLKETWTANVGKGQPSVLQVVNLPI-VERP---VC 173
Query: 195 DTKHYVVFTDVANV---------------CNGDSGGGMVFK--IDSAWYLRGIVS 232
+ TD N+ C GDSGG V K ++ WY GIVS
Sbjct: 174 KDSTRIRITD--NMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 226
Score = 88.1 bits (219), Expect = 2e-20
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 245 TKHYVVFTDVKRVHIYPTFNSS-NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLS 303
++ + +++++I+P +N N DIAL++L V +S Y+ PVCL D TA L
Sbjct: 72 ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQ 131
Query: 304 AVEGRDGTVIGWGY-------DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDET 356
A G G V GWG + L++ +PIV C + T +
Sbjct: 132 A--GYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVC---KDSTRIRITDN-M 185
Query: 357 FCAGFR 362
FCAG++
Sbjct: 186 FCAGYK 191
>2bdy_A Thrombin; thrombin, complex structure, hydrolase,
hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo
sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E*
1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A*
1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A*
1zgi_A* 1zgv_A* 1zrb_A* ...
Length = 289
Score = 137 bits (346), Expect = 4e-38
Identities = 70/235 (29%), Positives = 104/235 (44%), Gaps = 37/235 (15%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G G PW V L+R +CG SL+S +V+TAAHC+ P+DK + L++
Sbjct: 34 GSDAEIGMSPWQVMLFRKS--PQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLV 91
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS-NYLGDIALLQLSSDVDYSMYVRPVCL 141
+GK+ + + + + +++++I+P +N N DIAL++L V +S Y+ PVCL
Sbjct: 92 RIGKHSRTR-YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 150
Query: 142 WDDSTAPLQLSAVEGTSVC------NGDSGGGMVFKIDSAWYLRGI-VSITVARDGLRVC 194
D TA L A G N L+ + + I V R VC
Sbjct: 151 PDRETAASLLQA--GYK-GRVTGWGNLKETWTANVGKGQPSVLQVVNLPI-VERP---VC 203
Query: 195 DTKHYVVFTDVANV---------------CNGDSGGGMVFK--IDSAWYLRGIVS 232
+ TD N+ C GDSGG V K ++ WY GIVS
Sbjct: 204 KDSTRIRITD--NMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 256
Score = 89.0 bits (221), Expect = 2e-20
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 245 TKHYVVFTDVKRVHIYPTFNSS-NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLS 303
++ + +++++I+P +N N DIAL++L V +S Y+ PVCL D TA L
Sbjct: 102 ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQ 161
Query: 304 AVEGRDGTVIGWGY-------DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDET 356
A G G V GWG + L++ +PIV C + T +
Sbjct: 162 A--GYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVC---KDSTRIRITDN-M 215
Query: 357 FCAGFR 362
FCAG++
Sbjct: 216 FCAGYK 221
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase;
1.90A {Homo sapiens} PDB: 1ekb_B
Length = 235
Score = 134 bits (340), Expect = 9e-38
Identities = 52/238 (21%), Positives = 88/238 (36%), Gaps = 63/238 (26%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G G WPW V LY + +CG SLVS +++++AAHCV Y + ++
Sbjct: 4 GSDAKEGAWPWVVGLYY----DDRLLCGASLVSSDWLVSAAHCV----YGRNLEPSKWTA 55
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
LG + + + + + I P +N DIA++ L V+Y+ Y++P+ L
Sbjct: 56 ILGLHMKSN-LTSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLP 114
Query: 142 ----------------W----DDSTAPLQLSAVE----GTSVCNGDSGGGMVFKIDS--- 174
W T L + C + ++
Sbjct: 115 EENQVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQMPEYNIT--ENMIC 172
Query: 175 AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
A Y G + D+ C GDSGG ++ + ++ W+L G+ S
Sbjct: 173 AGYEEGGI------------DS------------CQGDSGGPLMCQENNRWFLAGVTS 206
Score = 86.1 bits (214), Expect = 9e-20
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Query: 245 TKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSA 304
T V + + I P +N DIA++ L V+Y+ Y++P+ L
Sbjct: 66 TSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISL-----PEENQVF 120
Query: 305 VEGRDGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
GR+ ++ GWG ++ L+ A +P++S+++C Q ++ CAG+
Sbjct: 121 PPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERC---QQQMPEYNITENMICAGYEE 177
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor;
mutagenically deglycosyalted human plasma kallikrein
protease domain; HET: BAM; 1.40A {Homo sapiens} PDB:
2anw_A*
Length = 241
Score = 133 bits (336), Expect = 4e-37
Identities = 56/238 (23%), Positives = 85/238 (35%), Gaps = 62/238 (26%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G +++ G+WPW V+L + + ++CGGSL+ +V+TAAHC P D I
Sbjct: 4 GTESSWGEWPWQVSL-QVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLP-----LQDVWRI 57
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
Y G Q+K + I+ + S DIAL++L + ++Y+ + +P+ L
Sbjct: 58 YSGILELS--DITKDTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLP 115
Query: 142 ----------------W----DDSTAPLQLSAVE----GTSVCNGDSGGGMVFKIDS--- 174
W + L V C +
Sbjct: 116 SKGDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQDYKIT--QRMVC 173
Query: 175 AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
A Y G D C GDSGG +V K + W L GI S
Sbjct: 174 AGYKEGGK------------DA------------CKGDSGGPLVCKHNGMWRLVGITS 207
Score = 83.8 bits (208), Expect = 6e-19
Identities = 26/123 (21%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Query: 240 LRVCDTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP 299
L + D F+ +K + I+ + S DIAL++L + ++Y+ + +P+ L
Sbjct: 62 LELSDITKDTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPSKGDTS 121
Query: 300 LQLSAVEGRDGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFC 358
+ V GWG+ E + L+ +P+V++++C ++ + C
Sbjct: 122 T-----IYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEEC---QKRYQDYKITQRMVC 173
Query: 359 AGF 361
AG+
Sbjct: 174 AGY 176
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor
complex, serine proteinase, benzamidine phosphonate,
serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens}
PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A*
3p8g_A* 3p8f_A*
Length = 241
Score = 132 bits (335), Expect = 5e-37
Identities = 57/212 (26%), Positives = 84/212 (39%), Gaps = 55/212 (25%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G G+WPW V+L+ ++CG SL+S N++++AAHC + D
Sbjct: 4 GTDADEGEWPWQVSLHALGQ---GHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTA 60
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
+LG + Q Q GVQ +++KR+ +P FN + DIALL+L +YS VRP+ L
Sbjct: 61 FLGLHDQSQ-RSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISLP 119
Query: 142 ----------------W----DDSTAPLQLSAVE----GTSVCN---------------- 161
W T L L E + C
Sbjct: 120 DASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQQITPRMMCVGF 179
Query: 162 ---------GDSGGGMV-FKIDSAWYLRGIVS 183
GDSGG + + D + G+VS
Sbjct: 180 LSGGVDSCQGDSGGPLSSVEADGRIFQAGVVS 211
Score = 85.0 bits (211), Expect = 3e-19
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 10/118 (8%)
Query: 245 TKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSA 304
+ V +KR+ +P FN + DIALL+L +YS VRP+ L D S
Sbjct: 71 SAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISLPDASHVF----- 125
Query: 305 VEGRDGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
G+ V GWG+ + L+ + +++ C Q T C GF
Sbjct: 126 PAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTC---ENLLPQQITPRM-MCVGF 179
>1aut_C Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2
PDB: 3f6u_H*
Length = 250
Score = 132 bits (335), Expect = 6e-37
Identities = 61/226 (26%), Positives = 97/226 (42%), Gaps = 35/226 (15%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G+ T RG PW V L ++ CG L+ ++V+TAAHC+ +S L++
Sbjct: 4 GKMTRRGDSPWQVVLLDSKK---KLACGAVLIHPSWVLTAAHCM--------DESKKLLV 52
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
LG+Y E + +K V ++P ++ S DIALL L+ S + P+CL
Sbjct: 53 RLGEYDLR--RWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLP 110
Query: 143 DDSTAPLQLSAVEGTSVCNG---DSGGGMVFKIDSAWYLRGI-VSITVARDGLRVCDTKH 198
D A +L+ ++ G S K + + L I + + V + C
Sbjct: 111 DSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPV-VPHN---ECSEVM 166
Query: 199 YVVFTDVANV------------CNGDSGGGMVFKIDSAWYLRGIVS 232
+ ++ N+ C GDSGG MV W+L G+VS
Sbjct: 167 SNMVSE--NMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVS 210
Score = 86.5 bits (215), Expect = 9e-20
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 11/123 (8%)
Query: 247 HYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVE 306
+ + D+K V ++P ++ S DIALL L+ S + P+CL D A +L
Sbjct: 64 KWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAEREL-NQA 122
Query: 307 GRDGTVIGWGY------DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAG 360
G++ V GWGY + + L +P+V H +C + + + + CAG
Sbjct: 123 GQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNEC---SEVMSNMVSEN-MLCAG 178
Query: 361 FRN 363
Sbjct: 179 ILG 181
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 137 bits (346), Expect = 6e-37
Identities = 69/230 (30%), Positives = 107/230 (46%), Gaps = 27/230 (11%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G G PW V L+R +CG SL+S +V+TAAHC+ P+DK + L++
Sbjct: 169 GSDAEIGMSPWQVMLFRKS--PQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLV 226
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS-NYLGDIALLQLSSDVDYSMYVRPVCL 141
+GK+ + + + + +++++I+P +N N DIAL++L V +S Y+ PVCL
Sbjct: 227 RIGKHSRTR-YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 285
Query: 142 WDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSI----TVARDGLRVCDTK 197
D TA L A V +G G + + +A +G S+ + VC
Sbjct: 286 PDRETAASLLQAGYKGRV----TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 341
Query: 198 HYVVFTD-------VANV------CNGDSGGGMVFK--IDSAWYLRGIVS 232
+ TD + C GDSGG V K ++ WY GIVS
Sbjct: 342 TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 391
Score = 90.3 bits (224), Expect = 3e-20
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 14/127 (11%)
Query: 244 DTKHYVVFTDVKRVHIYPTFNSS-NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQL 302
++ + +++++I+P +N N DIAL++L V +S Y+ PVCL D TA L
Sbjct: 236 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 295
Query: 303 SAVEGRDGTVIGWGY-------DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDE 355
A G G V GWG + L++ +PIV C + T +
Sbjct: 296 QA--GYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVC---KDSTRIRITDNM 350
Query: 356 TFCAGFR 362
FCAG++
Sbjct: 351 -FCAGYK 356
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 136 bits (344), Expect = 7e-37
Identities = 57/280 (20%), Positives = 101/280 (36%), Gaps = 48/280 (17%)
Query: 1 MCYRDVSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVI 60
+ CG + + V+ G + PW L + ++CGG+++S Y++
Sbjct: 104 FKDENFDCGNFLSQR----VSNGYEVKLSSRPWMALLRYQQFGESRFLCGGAMISERYIL 159
Query: 61 TAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSD----------EGGVQNKQVKRVHIYP 110
TAAHCV +D I LG++ D V N +++ I+
Sbjct: 160 TAAHCVHGLQ------NDLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHE 213
Query: 111 TFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVF 170
+++ + + DIALL+L+ V + +++P+CL + + V +G G
Sbjct: 214 KYDARHIMHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFV----TGWGTTE 269
Query: 171 KIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTD---------VANVCNGDSGGGMVFKI 221
S+ L V C + + + C GDSGG +
Sbjct: 270 NGSSSDVLL---QANVPLQPRSACSQAYRRAVPLSQLCVGGGDLQDSCKGDSGGPLQAPA 326
Query: 222 DSA------WYLRGIVSITVARDGLRVCDTKHY-VVFTDV 254
GIVS G+ C ++T+V
Sbjct: 327 QYLGEYAPKMVEFGIVSQ-----GVVTCGQISLPGLYTNV 361
Score = 93.8 bits (233), Expect = 2e-21
Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 8/130 (6%)
Query: 234 TVARDGLRVCDTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 293
+ + C V +++ I+ +++ + + DIALL+L+ V + +++P+CL
Sbjct: 188 CRQQGRKKKCAPPVVNV--GIEKHLIHEKYDARHIMHDIALLKLNRSVPFQKHIKPICLP 245
Query: 294 DDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTS 353
L+ A + V GWG EN S+ L A +P+ C Q + +
Sbjct: 246 ITDE--LKEKAEQISTYFVTGWGTTENGSSSDVLLQANVPLQPRSACS----QAYRRAVP 299
Query: 354 DETFCAGFRN 363
C G +
Sbjct: 300 LSQLCVGGGD 309
Score = 39.5 bits (92), Expect = 0.001
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 12/60 (20%)
Query: 155 EGTSVCNGDSGGGMVFKIDSA------WYLRGIVSITVARDGLRVCDTKHY-VVFTDVAN 207
+ C GDSGG + GIVS G+ C ++T+V
Sbjct: 309 DLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQ-----GVVTCGQISLPGLYTNVGE 363
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA
inhibitor complex, covalent inhibitor, alternative
splicing, blood coagulation; HET: INH; 1.60A {Homo
sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A*
1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A*
1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A*
2fda_A* ...
Length = 238
Score = 131 bits (333), Expect = 9e-37
Identities = 57/238 (23%), Positives = 85/238 (35%), Gaps = 62/238 (26%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G + RG+WPW V L T ++CGGS++ +++TAAHC L +
Sbjct: 4 GTASVRGEWPWQVTL-HTTSPTQRHLCGGSIIGNQWILTAAHCFYGVE-----SPKILRV 57
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
Y G +Q + V+ + I+ + + DIALL+L + V+Y+ RP+ L
Sbjct: 58 YSGILNQS--EIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLP 115
Query: 142 ----------------W-----DDSTAP-LQLSAVE--GTSVCNGDSGGGMVFKIDS--- 174
W D LQ + + C G +
Sbjct: 116 SKGERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKIT--HKMIC 173
Query: 175 AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
A Y G D C GDSGG + K + W+L GI S
Sbjct: 174 AGYREGGK------------DA------------CKGDSGGPLSCKHNEVWHLVGITS 207
Score = 82.3 bits (204), Expect = 2e-18
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 9/119 (7%)
Query: 244 DTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLS 303
+ K F V+ + I+ + + DIALL+L + V+Y+ RP+ L
Sbjct: 66 EIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISL-----PSKGER 120
Query: 304 AVEGRDGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
V D V GWGY D++ L+ A +P+V++++C ++ + + CAG+
Sbjct: 121 NVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEEC---QKRYRGHKITHKMICAGY 176
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_B
Length = 251
Score = 132 bits (333), Expect = 1e-36
Identities = 55/246 (22%), Positives = 87/246 (35%), Gaps = 66/246 (26%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKP-------- 74
G+ +G PW L G CGGSL+ ++++TAAHC+ + K
Sbjct: 4 GRPAQKGTTPWIAMLSHLNG---QPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDL 60
Query: 75 VDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSM 134
+ I LGK+ + + + Q+ VK ++P ++ + + D+AL++L +
Sbjct: 61 LSPSDFKIILGKHWRLR--SDENEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNA 118
Query: 135 YVRPVCL---------------W-----DDSTAPLQLSAVE--GTSVCNGDSGGGMVFKI 172
+V P+CL W L + S C + + K+
Sbjct: 119 FVMPICLPEGPQQEGAMVIVSGWGKQFLQRFPETLMEIEIPIVDHSTCQ-KAYAPLKKKV 177
Query: 173 DS----AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMV--FKIDSAWY 226
A G D C GDSGG MV + WY
Sbjct: 178 TRDMICAGEKEGGK------------DA------------CAGDSGGPMVTLNRERGQWY 213
Query: 227 LRGIVS 232
L G VS
Sbjct: 214 LVGTVS 219
Score = 93.5 bits (233), Expect = 2e-22
Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 8/115 (6%)
Query: 249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGR 308
VK ++P ++ + + D+AL++L + +V P+CL + G
Sbjct: 82 EQHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFVMPICLPEGPQQE-------GA 134
Query: 309 DGTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
V GWG R E L +PIV H C + + T D CAG +
Sbjct: 135 MVIVSGWGKQFLQRFPETLMEIEIPIVDHSTCQKAYAPLKKKVTRDM-ICAGEKE 188
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2
PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H
1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H*
1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H*
...
Length = 254
Score = 131 bits (333), Expect = 2e-36
Identities = 62/227 (27%), Positives = 103/227 (45%), Gaps = 36/227 (15%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G+ +G+ PW V L N + +CGG+L++ +V++AAHC DK + L+
Sbjct: 4 GKVCPKGECPWQVLLLV----NGAQLCGGTLINTIWVVSAAHCF-----DKIKNWRNLIA 54
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
LG++ + +G Q+++V +V I T+ DIALL+L V + +V P+CL
Sbjct: 55 VLGEHDLSE--HDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLP 112
Query: 143 DDSTAPLQLSAVEGTSVCNGDSG-GGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVV 201
+ + + L+ V + V SG G ++ + +A L +++ + C +
Sbjct: 113 ERTFSERTLAFVRFSLV----SGWGQLLDRGATALELMV-LNVPRLMT--QDCL-QQSRK 164
Query: 202 FTDVANV----------------CNGDSGGGMVFKIDSAWYLRGIVS 232
D N+ C GDSGG WYL GIVS
Sbjct: 165 VGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVS 211
Score = 92.7 bits (231), Expect = 6e-22
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRD 309
V +V I T+ DIALL+L V + +V P+CL + + + L+ R
Sbjct: 69 QSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAF--VRF 126
Query: 310 GTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFT-SDETFCAGFRN 363
V GWG + + EL + +P + Q CL + + ++ FCAG+ +
Sbjct: 127 SLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSD 182
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation,
pyroglutamation, eight-membered R peptide bond,
hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Length = 238
Score = 131 bits (331), Expect = 2e-36
Identities = 43/239 (17%), Positives = 86/239 (35%), Gaps = 63/239 (26%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G + ++PW V++ R + S+ CGGS+++ +V+ AAHC+ + + +
Sbjct: 4 GIEARPYEFPWQVSVRRKS--SDSHFCGGSIINDRWVVCAAHCM------QGEAPALVSL 55
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
+G++ + Q V + + ++ + D+++++ + + + + V P+C
Sbjct: 56 VVGEHDSS--AASTVRQTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPICAP 113
Query: 142 ---------------W-----DDSTAPLQLSAVE----GTSVCNGDSGGGMVFKIDS--- 174
W P L V + C+ ++ D
Sbjct: 114 DPANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYTSDTIY--DDMIC 171
Query: 175 AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFK-IDSAWYLRGIVS 232
A G+ D+ C GDSGG + K + L GIVS
Sbjct: 172 ATDNTGMTDR----------DS------------CQGDSGGPLSVKDGSGIFSLVGIVS 208
Score = 81.9 bits (203), Expect = 3e-18
Identities = 18/118 (15%), Positives = 42/118 (35%), Gaps = 11/118 (9%)
Query: 248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEG 307
DV + + ++ + D+++++ + + + + V P+C P +
Sbjct: 68 VRQTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPICA------PDPANDYVY 121
Query: 308 RDGTVIGWGYDEND--RVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
R GWG + L+ + I ++ C + + S D+ CA
Sbjct: 122 RKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFC---DAVYTSDTIYDDMICATDNT 176
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 135 bits (341), Expect = 2e-36
Identities = 56/266 (21%), Positives = 92/266 (34%), Gaps = 70/266 (26%)
Query: 8 CGTVVYNKAQPLVTYGQKTAR-GQWPWHVALYRTEGINLS----YVCGGSLVSVNYVITA 62
CG +T A G++PW VA+ + I S VCGGSL++ + V+T
Sbjct: 118 CGIRNERGLDFKITGQTNEAEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSVVLTG 177
Query: 63 AHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIA 122
AHCV + D + I G++ + Q +++++V I+ FN + D+A
Sbjct: 178 AHCV----NSYQSNLDAIKIRAGEWDTLTEKERLPYQERKIRQVIIHSNFNPKTVVNDVA 233
Query: 123 LLQLSSDVDYSMYVRPVCL----------------W------DDSTAPLQLSAVE----G 156
LL L + + + +CL W L ++
Sbjct: 234 LLLLDRPLVQADNIGTICLPQQSQIFDSTECFASGWGKKEFGSRHRYSNILKKIQLPTVD 293
Query: 157 TSVCN---GDSGGGMVFKIDS----AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVC 209
C ++ G+ F +D A +G DT C
Sbjct: 294 RDKCQADLRNTRLGLKFVLDQTFVCAGGEQGK-------------DT------------C 328
Query: 210 NGDSGGGMVFKI---DSAWYLRGIVS 232
GD G + S + GIV+
Sbjct: 329 TGDGGSPLFCPDPRNPSRYMQMGIVA 354
Score = 89.1 bits (221), Expect = 7e-20
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 12/115 (10%)
Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
+++V I+ FN + D+ALL L + + + +CL P Q + +
Sbjct: 213 KIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIGTICL------PQQSQIFDSTECFA 266
Query: 313 IGWGYDEND---RVSEELKMAIMPIVSHQQC--LWSNPQFFSQFTSDETF-CAGF 361
GWG E R S LK +P V +C N + +F D+TF CAG
Sbjct: 267 SGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGG 321
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine
proteinase, C-terminal peptidase; 2.35A {Bos taurus}
SCOP: b.47.1.2
Length = 251
Score = 131 bits (331), Expect = 3e-36
Identities = 54/212 (25%), Positives = 83/212 (39%), Gaps = 60/212 (28%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G+ WPW ++L + CGG+L++ N+V+TAAHC+ ++ T +
Sbjct: 17 GEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCI--------SNTLTYRV 68
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
LGK + + DE G V + ++ +NS DIAL++L+ V+ ++ CL
Sbjct: 69 ALGK-NNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLP 127
Query: 142 ----------------W------DDSTAPLQLSAV------------------------- 154
W A LQ
Sbjct: 128 SEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRDWWGTTVKETMVCA 187
Query: 155 --EG-TSVCNGDSGGGMVFKIDSAWYLRGIVS 183
+G S CNGDSGG + + D W +RGIVS
Sbjct: 188 GGDGVISACNGDSGGPLNCQADGQWDVRGIVS 219
Score = 81.1 bits (201), Expect = 7e-18
Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 8/118 (6%)
Query: 245 TKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSA 304
+ ++ V + ++ +NS DIAL++L+ V+ ++ CL + +
Sbjct: 79 DEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGSLL----- 133
Query: 305 VEGRDGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
+ V GWG N ++ EL+ + P+V + C S ++ + CAG
Sbjct: 134 PQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATC--SQRDWWGTTVKETMVCAGG 189
Score = 41.4 bits (98), Expect = 2e-04
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 209 CNGDSGGGMVFKIDSAWYLRGIVS 232
CNGDSGG + + D W +RGIVS
Sbjct: 196 CNGDSGGPLNCQADGQWDVRGIVS 219
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease,
fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Length = 252
Score = 129 bits (327), Expect = 9e-36
Identities = 53/246 (21%), Positives = 80/246 (32%), Gaps = 63/246 (25%)
Query: 23 GQKTARGQWPWHVALYR--TEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTL 80
G PW A++ ++CGG L+S ++++AAHC ++ L
Sbjct: 4 GLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERF-----PPHHL 58
Query: 81 VIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSD----VDYSMYV 136
+ LG+ ++ Q +V++ ++ F+ Y DIALLQL SD S V
Sbjct: 59 TVILGRTYRV--VPGEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVV 116
Query: 137 RPVCL-----------------W-----DDSTAPLQLSAVE----GTSVCNGDSGGGMVF 170
R VCL + +L +S C
Sbjct: 117 RTVCLPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNR-- 174
Query: 171 KIDS----AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWY 226
+ A R D C GDSGG +V D
Sbjct: 175 TVTDNMLCAGDTRSGGPQANLHDA------------------CQGDSGGPLVCLNDGRMT 216
Query: 227 LRGIVS 232
L GI+S
Sbjct: 217 LVGIIS 222
Score = 78.5 bits (194), Expect = 7e-17
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 13/123 (10%)
Query: 245 TKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSD----VDYSMYVRPVCLWDDSTAPL 300
+V++ ++ F+ Y DIALLQL SD S VR VCL P
Sbjct: 70 PGEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCL-----PPA 124
Query: 301 QLSAVEGRDGTVIGWGYDEND--RVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFC 358
L + + + G+G E SE LK A + + +C ++ ++ +D C
Sbjct: 125 DLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRC--TSQHLLNRTVTDNMLC 182
Query: 359 AGF 361
AG
Sbjct: 183 AGD 185
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease
(elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Length = 241
Score = 128 bits (324), Expect = 2e-35
Identities = 54/263 (20%), Positives = 88/263 (33%), Gaps = 67/263 (25%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G + G++PW ++ + + + S+ CG SL+S ++A+HCV V + + +
Sbjct: 4 GTNASPGEFPWQLSQ-QRQSGSWSHSCGASLLSSTSALSASHCV------DGVLPNNIRV 56
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS--NYLGDIALLQLSSDVDYSMYVRPVC 140
G Q SD G Q V ++ + + +Y DIA+L L++ + ++
Sbjct: 57 IAGL---WQQSDTSGTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAV 113
Query: 141 L-----------------W----DDSTAPLQLSAVE----GTSVCNGDSGGGMVFKIDS- 174
L W + P L T+ C G I
Sbjct: 114 LPANNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDN 173
Query: 175 ---AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIV 231
G CNGDSGG + D + G+
Sbjct: 174 HICVQDPAGNTG------------------------ACNGDSGGPLNCP-DGGTRVVGVT 208
Query: 232 SITVARDGLRVCDTKHYVVFTDV 254
S V GL C + V+T V
Sbjct: 209 SW-VVSSGLGACLPDYPSVYTRV 230
Score = 81.5 bits (202), Expect = 5e-18
Identities = 19/115 (16%), Positives = 44/115 (38%), Gaps = 8/115 (6%)
Query: 250 VFTDVKRVHIYPTFNSS--NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEG 307
+V ++ + + +Y DIA+L L++ + ++ L ++ G
Sbjct: 70 QTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNNND-----YAG 124
Query: 308 RDGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
+ GWG D + + + L+ + +P+++ QC + D C
Sbjct: 125 TTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDNHICVQD 179
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Length = 236
Score = 127 bits (322), Expect = 4e-35
Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 62/213 (29%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G+ WPW ++L G + + CGGSL+ +V+TAAHCV + T +
Sbjct: 4 GRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCV--------DSARTWRV 55
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLG--DIALLQLSSDVDYSMYVRPVC 140
LG+++ + ++EG Q V V I+ +NS + G DIALL+L++ + V+
Sbjct: 56 VLGEHNLN--TNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAA 113
Query: 141 L-----------------W------DDSTAPLQLSAV----------------------- 154
L W + L+ + +
Sbjct: 114 LPPSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGSTVKTTMV 173
Query: 155 ----EGTSVCNGDSGGGMVFKIDSAWYLRGIVS 183
S CNGDSGG + +++ ++Y+ G+ S
Sbjct: 174 CAGGGANSGCNGDSGGPLNCQVNGSYYVHGVTS 206
Score = 77.6 bits (192), Expect = 1e-16
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 10/116 (8%)
Query: 248 YVVFTDVKRVHIYPTFNSSNYLG--DIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAV 305
V V I+ +NS + G DIALL+L++ + V+ L +
Sbjct: 68 KEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSNQIL-----P 122
Query: 306 EGRDGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAG 360
+ GWG +S+ LK A +P V H C S+ ++ CAG
Sbjct: 123 NNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATC--SSSGWWGSTVKTTMVCAG 176
Score = 40.3 bits (95), Expect = 4e-04
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 209 CNGDSGGGMVFKIDSAWYLRGIVS 232
CNGDSGG + +++ ++Y+ G+ S
Sbjct: 183 CNGDSGGPLNCQVNGSYYVHGVTS 206
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI,
protein-protein interaction, non-cognate binding, S1
pocket, primary specificity; 1.70A {Bos taurus} SCOP:
b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E
1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A
1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Length = 245
Score = 126 bits (320), Expect = 1e-34
Identities = 59/210 (28%), Positives = 85/210 (40%), Gaps = 63/210 (30%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G++ G WPW V+L G + CGGSL++ N+V+TAAHC V+
Sbjct: 19 GEEAVPGSWPWQVSLQDKTG---FHFCGGSLINENWVVTAAHCGVTTSD---------VV 66
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
G++ Q S +Q ++ +V +NS DI LL+LS+ +S V VCL
Sbjct: 67 VAGEFDQG--SSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLP 124
Query: 142 ----------------W-------DDSTAPLQLSAV------------------------ 154
W ++ LQ +++
Sbjct: 125 SASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICAG 184
Query: 155 -EGTSVCNGDSGGGMVFKIDSAWYLRGIVS 183
G S C GDSGG +V K + AW L GIVS
Sbjct: 185 ASGVSSCMGDSGGPLVCKKNGAWTLVGIVS 214
Score = 77.6 bits (192), Expect = 1e-16
Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 11/114 (9%)
Query: 249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGR 308
+ + +V +NS DI LL+LS+ +S V VCL S G
Sbjct: 80 IQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDF-----AAGT 134
Query: 309 DGTVIGWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAG 360
GWG N + L+ A +P++S+ C + ++ CAG
Sbjct: 135 TCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNC---KKYWGTKIKDAM-ICAG 184
Score = 41.4 bits (98), Expect = 2e-04
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 209 CNGDSGGGMVFKIDSAWYLRGIVS 232
C GDSGG +V K + AW L GIVS
Sbjct: 191 CMGDSGGPLVCKKNGAWTLVGIVS 214
>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S
3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*
Length = 235
Score = 126 bits (318), Expect = 1e-34
Identities = 55/243 (22%), Positives = 90/243 (37%), Gaps = 75/243 (30%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G+ GQ+PW V L + CGGS+V+ +++TAAHCV + +
Sbjct: 4 GEDAKPGQFPWQVVLNG----KVDAFCGGSIVNEKWIVTAAHCVE--------TGVKITV 51
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS--NYLGDIALLQLSSDVDYSMYVRPVC 140
G+++ E Q + V R+ + FN++ Y DIALL+L + + YV P+C
Sbjct: 52 VAGEHNIE--ETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPIC 109
Query: 141 L-------------------W----DDSTAPLQLSAVE----GTSVCNGDSGGGMVFKID 173
+ W + L L + + C + I
Sbjct: 110 IADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKF----TIT 165
Query: 174 S----AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRG 229
+ A + G D+ C GDSGG V +++ +L G
Sbjct: 166 NNMFCAGFHEGGR------------DS------------CQGDSGGPHVTEVEGTSFLTG 201
Query: 230 IVS 232
I+S
Sbjct: 202 IIS 204
Score = 83.8 bits (208), Expect = 5e-19
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 10/122 (8%)
Query: 245 TKHYVVFTDVKRVHIYPTFNSS--NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQL 302
T+H +V R+ + FN++ Y DIALL+L + + YV P+C+ D + L
Sbjct: 61 TEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFL 120
Query: 303 SAVEGRDGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
G V GWG R + L+ +P+V C T++ FCAGF
Sbjct: 121 K---FGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATC---LRSTKFTITNNM-FCAGF 173
Query: 362 RN 363
Sbjct: 174 HE 175
>2jde_A Urokinase-type plasminogen activator; plasminogen activation,
EGF-like domain, blood coagulation, inhibitor complex,
UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Length = 276
Score = 127 bits (320), Expect = 2e-34
Identities = 56/247 (22%), Positives = 92/247 (37%), Gaps = 70/247 (28%)
Query: 23 GQKTARGQWPWHVAL-YRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLV 81
G+ T PW A+ R G +++YVCGGSL+S +VI+A HC P + +
Sbjct: 27 GEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYP-----KKEDYI 81
Query: 82 IYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS--NYLGDIALLQLSS----DVDYSMY 135
+YLG+ + S+ G +V+ + ++ +++ + DIALL++ S S
Sbjct: 82 VYLGRSRLN--SNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 139
Query: 136 VRPVCL-----------------W-----DDSTAPLQLSAVE----GTSVCNGDSGGGMV 169
++ +CL + D P QL C G
Sbjct: 140 IQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYG-- 197
Query: 170 FKIDS----AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAW 225
++ + A + D+ C GDSGG +V +
Sbjct: 198 SEVTTKMLCAADPQWKT------------DS------------CQGDSGGPLVCSLQGRM 233
Query: 226 YLRGIVS 232
L GIVS
Sbjct: 234 TLTGIVS 240
Score = 72.3 bits (178), Expect = 1e-14
Identities = 25/125 (20%), Positives = 55/125 (44%), Gaps = 15/125 (12%)
Query: 245 TKHYVVFTDVKRVHIYPTFNSS--NYLGDIALLQLSS----DVDYSMYVRPVCLWDDSTA 298
+ +V+ + ++ +++ + DIALL++ S S ++ +CL
Sbjct: 92 NTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYND 151
Query: 299 PLQLSAVEGRDGTVIGWGY-DENDRV-SEELKMAIMPIVSHQQCLWSNPQFFSQFTSDET 356
P G + G+G + D + E+LKM ++ ++SH++C P ++ + +
Sbjct: 152 P-----QFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHREC--QQPHYYGSEVTTKM 204
Query: 357 FCAGF 361
CA
Sbjct: 205 LCAAD 209
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 132 bits (334), Expect = 2e-34
Identities = 61/260 (23%), Positives = 89/260 (34%), Gaps = 64/260 (24%)
Query: 2 CYRDVSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVIT 61
R K +P + G + RG+WPW V L T ++CGGS++ +++T
Sbjct: 370 TLRLCKMDNECTTKIKPRIVGGTASVRGEWPWQVTL-HTTSPTQRHLCGGSIIGNQWILT 428
Query: 62 AAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDI 121
AAHC L +Y G +Q + V+ + I+ + + DI
Sbjct: 429 AAHCFYGVE-----SPKILRVYSGILNQS--EIKEDTSFFGVQEIIIHDQYKMAESGYDI 481
Query: 122 ALLQLSSDVDYSMYVRPVCL-----------------W----DDSTAPLQLSAVE----G 156
ALL+L + V+Y+ RP+CL W L +
Sbjct: 482 ALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVT 541
Query: 157 TSVCNGDSGGGMVFKIDS----AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGD 212
C G KI A Y G D C GD
Sbjct: 542 NEECQKRYRGH---KITHKMICAGYREGGK------------DA------------CKGD 574
Query: 213 SGGGMVFKIDSAWYLRGIVS 232
SGG + K + W+L GI S
Sbjct: 575 SGGPLSCKHNEVWHLVGITS 594
Score = 84.1 bits (208), Expect = 6e-18
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 9/120 (7%)
Query: 244 DTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLS 303
+ K F V+ + I+ + + DIALL+L + V+Y+ RP+CL +
Sbjct: 453 EIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNV--- 509
Query: 304 AVEGRDGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
D V GWGY D++ L+ A +P+V++++C ++ + + CAG+R
Sbjct: 510 --IYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEEC---QKRYRGHKITHKMICAGYR 564
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation,
fibrinolysis, plasminogen activation; HET: ABV; 1.45A
{Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U*
1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U*
2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U*
1vj9_U* 1sc8_U* ...
Length = 247
Score = 125 bits (317), Expect = 3e-34
Identities = 55/247 (22%), Positives = 91/247 (36%), Gaps = 70/247 (28%)
Query: 23 GQKTARGQWPWHVAL-YRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLV 81
G+ T PW A+ R G +++YVCGGSL+S +VI+A HC P + +
Sbjct: 4 GEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYP-----KKEDYI 58
Query: 82 IYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSN--YLGDIALLQLSSD----VDYSMY 135
+YLG+ + S+ G +V+ + ++ +++ + DIALL++ S S
Sbjct: 59 VYLGRSRLN--SNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116
Query: 136 VRPVCL-----------------W-----DDSTAPLQLSAVE----GTSVCNGDSGGGMV 169
++ + L + D P QL C G
Sbjct: 117 IQTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYG-- 174
Query: 170 FKIDS----AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAW 225
++ + A + D+ C GDSGG +V +
Sbjct: 175 SEVTTKMLCAADPQWKT------------DS------------CQGDSGGPLVCSLQGRM 210
Query: 226 YLRGIVS 232
L GIVS
Sbjct: 211 TLTGIVS 217
Score = 71.1 bits (175), Expect = 2e-14
Identities = 23/125 (18%), Positives = 54/125 (43%), Gaps = 15/125 (12%)
Query: 245 TKHYVVFTDVKRVHIYPTFNSSN--YLGDIALLQLSSD----VDYSMYVRPVCLWDDSTA 298
+ +V+ + ++ +++ + DIALL++ S S ++ + L
Sbjct: 69 NTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTISL-----P 123
Query: 299 PLQLSAVEGRDGTVIGWGY-DENDRV-SEELKMAIMPIVSHQQCLWSNPQFFSQFTSDET 356
+ G + G+G + D + E+LKM ++ ++SH++C P ++ + +
Sbjct: 124 SMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHREC--QQPHYYGSEVTTKM 181
Query: 357 FCAGF 361
CA
Sbjct: 182 LCAAD 186
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
SCOP: b.47.1.2
Length = 242
Score = 125 bits (316), Expect = 3e-34
Identities = 51/243 (20%), Positives = 83/243 (34%), Gaps = 67/243 (27%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
GQK G +PW V GG+L+ +++TAAH + K + + +L +
Sbjct: 4 GQKAKMGNFPWQVFTNI------HGRGGGALLGDRWILTAAHTLYPKE-HEAQSNASLDV 56
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFN---SSNYLGDIALLQLSSDVDYSMYVRPV 139
+LG + + N ++RV ++P + S N+ GDIALL+L + V + P+
Sbjct: 57 FLGHTNVEELMKL---GNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPI 113
Query: 140 CL-----------------W----DDSTAPLQLSAVE--GTSVCNGD-SGGGMVFKIDS- 174
CL + + L+ + C G +
Sbjct: 114 CLPDNDTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQN 173
Query: 175 ---AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSA--WYLRG 229
A + D C GDSGG + + W G
Sbjct: 174 MFCAGHPSLKQ------------DA------------CQGDSGGVFAVRDPNTDRWVATG 209
Query: 230 IVS 232
IVS
Sbjct: 210 IVS 212
Score = 88.1 bits (219), Expect = 2e-20
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 10/114 (8%)
Query: 254 VKRVHIYPTFN---SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDG 310
++RV ++P + S N+ GDIALL+L + V + P+CL D+ T G G
Sbjct: 74 IRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFY-----DLGLMG 128
Query: 311 TVIGWGYDENDRVSEELKMAIMPIVSHQQCL-WSNPQFFSQFTSDETFCAGFRN 363
V G+G ++++ +L+ +P+ + Q C W + S FCAG +
Sbjct: 129 YVSGFGV-MEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPS 181
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease,
catalytic intermediate, atomic resolution,
hydrolase-hydrolase inhibitor complex; 0.94A {Sus
scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B*
1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A*
1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A*
1esa_A 1esb_A* 1est_A* ...
Length = 240
Score = 125 bits (316), Expect = 4e-34
Identities = 49/214 (22%), Positives = 88/214 (41%), Gaps = 63/214 (29%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G + R WP ++L G + ++ CGG+L+ N+V+TAAHCV T +
Sbjct: 4 GTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCV--------DRELTFRV 55
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLG--DIALLQLSSDVDYSMYVRPVC 140
+G+++ + + G Q V+++ ++P +N+ + DIALL+L+ V + YV+
Sbjct: 56 VVGEHNLN--QNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGV 113
Query: 141 L-----------------W-----DDSTAP-LQLSAV----------------------- 154
L W + A LQ + +
Sbjct: 114 LPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMV 173
Query: 155 ----EG-TSVCNGDSGGGMVFKIDSAWYLRGIVS 183
+G S C GDSGG + ++ + + G+ S
Sbjct: 174 CAGGDGVRSGCQGDSGGPLHCLVNGQYAVHGVTS 207
Score = 78.4 bits (194), Expect = 5e-17
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 10/117 (8%)
Query: 248 YVVFTDVKRVHIYPTFNSSNYLG--DIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAV 305
+ V+++ ++P +N+ + DIALL+L+ V + YV+ L
Sbjct: 68 TEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVL-----PRAGTILA 122
Query: 306 EGRDGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
+ GWG N ++++ L+ A +P V + C S+ ++ + CAG
Sbjct: 123 NNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAIC--SSSSYWGSTVKNSMVCAGG 177
Score = 40.6 bits (96), Expect = 3e-04
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 209 CNGDSGGGMVFKIDSAWYLRGIVS 232
C GDSGG + ++ + + G+ S
Sbjct: 184 CQGDSGGPLHCLVNGQYAVHGVTS 207
>1fxy_A Coagulation factor XA-trypsin chimera; protease,
chloromethylketone, hydrolase-hydrolase I complex; HET:
0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Length = 228
Score = 124 bits (314), Expect = 4e-34
Identities = 56/238 (23%), Positives = 86/238 (36%), Gaps = 73/238 (30%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G G+ PW L E CGG+++S Y++TAAHC+ + +
Sbjct: 4 GYNCKDGEVPWQALLINEEN---EGFCGGTILSEFYILTAAHCLYQAKR--------FKV 52
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
+G + Q +EGG +V+ V + F Y DIA+L+L + + + M V P L
Sbjct: 53 RVGDRNTEQ--EEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLP 110
Query: 142 --------------W-----DDSTAPLQLSAVE----GTSVCNGDSGGGMVFKIDS---- 174
W + P +L ++ + C G KI S
Sbjct: 111 TAPPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPG----KITSNMFC 166
Query: 175 AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
+L G D+ C GDSGG +V L+G+VS
Sbjct: 167 VGFLEGGK------------DS------------CQGDSGGPVVCN----GQLQGVVS 196
Score = 79.1 bits (196), Expect = 2e-17
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 13/116 (11%)
Query: 250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRD 309
+V+ V + F Y DIA+L+L + + + M V P L A G
Sbjct: 67 AVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLPTAPPAT-------GTK 119
Query: 310 GTVIGWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
+ GWG +EL+ P++S +C S P + TS+ FC GF
Sbjct: 120 CLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYP---GKITSN-MFCVGFLE 171
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 130 bits (327), Expect = 6e-34
Identities = 45/266 (16%), Positives = 81/266 (30%), Gaps = 66/266 (24%)
Query: 8 CGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVT 67
CG V + + T + PW + C G++VS +V+TAAHC T
Sbjct: 211 CGMVWEH--------RKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFT 262
Query: 68 KKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS---------NYL 118
++ + +G ++ +++ V +P +N + Y
Sbjct: 263 VDD-----KEHSIKVSVGGEK----------RDLEIEVVLFHPNYNINGKKEAGIPEFYD 307
Query: 119 GDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYL 178
D+AL++L + + Y +RP+CL L T+ ++ D
Sbjct: 308 YDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTC--QQQKEELLPAQDIKALF 365
Query: 179 RGIVSIT--------VARDGLRVCDTKHYVVFTDVANV---------------------- 208
D C+
Sbjct: 366 VSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADP 425
Query: 209 --CNGDSGGGMVFKIDSAWYLRGIVS 232
C GDSGG ++ S + G++S
Sbjct: 426 NTCRGDSGGPLIVHKRSRFIQVGVIS 451
Score = 65.3 bits (159), Expect = 7e-12
Identities = 19/139 (13%), Positives = 43/139 (30%), Gaps = 28/139 (20%)
Query: 253 DVKRVHIYPTFNSS---------NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLS 303
+++ V +P +N + Y D+AL++L + + Y +RP+CL L
Sbjct: 282 EIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALR 341
Query: 304 AVEGRDGTVIGWGYDENDRV--------SEELKMAIMPIVSHQQC-----------LWSN 344
+ ++L + I + + +
Sbjct: 342 LPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDK 401
Query: 345 PQFFSQFTSDETFCAGFRN 363
+ S+ + C G +
Sbjct: 402 VKDISEVVTPRFLCTGGVS 420
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin
membrane, disulfide bond, glycoprotein, hydrolase,
membrane protease, secreted; 1.30A {Homo sapiens} PDB:
3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A
3dfl_A*
Length = 261
Score = 125 bits (315), Expect = 7e-34
Identities = 64/245 (26%), Positives = 90/245 (36%), Gaps = 70/245 (28%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G GQWPW V++ EG +VCGGSLVS +V++AAHC + +
Sbjct: 4 GSSAVAGQWPWQVSI-TYEG---VHVCGGSLVSEQWVLSAAHCF-----PSEHHKEAYEV 54
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
LG + S + +K + +P++ GDIALLQLS + +S Y+RP+ L
Sbjct: 55 KLGAHQLD--SYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLP 112
Query: 142 ----------------W------DDSTAPLQLSAVE----GTSVCN----GDSGGGMVFK 171
W P L +E CN D+
Sbjct: 113 AAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHF 172
Query: 172 IDS----AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYL 227
+ A Y+ G C GDSGG + ++ WYL
Sbjct: 173 VQEDMVCAGYVEGGKDA------------------------CQGDSGGPLSCPVEGLWYL 208
Query: 228 RGIVS 232
GIVS
Sbjct: 209 TGIVS 213
Score = 78.1 bits (193), Expect = 1e-16
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 14/122 (11%)
Query: 248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEG 307
+ +K + +P++ GDIALLQLS + +S Y+RP+ L Q S G
Sbjct: 67 DAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISL-----PAAQASFPNG 121
Query: 308 RDGTVIGWG---YDENDRVSEELKMAIMPIVSHQQC-----LWSNPQFFSQFTSDETFCA 359
TV GWG + + L+ +P++S + C + + P+ D CA
Sbjct: 122 LHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDM-VCA 180
Query: 360 GF 361
G+
Sbjct: 181 GY 182
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 123 bits (312), Expect = 9e-34
Identities = 52/232 (22%), Positives = 77/232 (33%), Gaps = 69/232 (29%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G + WP AL+ I+ Y CGGSL+S +++TAAHC+ + + +
Sbjct: 4 GVEAVPNSWPHQAALF----IDDMYFCGGSLISPEWILTAAHCM--------DGAGFVDV 51
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
LG ++ DE Q ++ +NS DIA+++L V + + V L
Sbjct: 52 VLGAHNI--REDEATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLP 109
Query: 142 --------------W-----DDSTAPLQLSAVE--------------------------- 155
W L V+
Sbjct: 110 STDVGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYGIVTDGNICIDSTG 169
Query: 156 GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVAN 207
G CNGDSGG + GI S A G C+ + FT V
Sbjct: 170 GKGTCNGDSGGPLN----YNGLTYGITSF-GAAAG---CEAGYPDAFTRVTY 213
Score = 75.3 bits (186), Expect = 5e-16
Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 14/114 (12%)
Query: 250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRD 309
V ++ +NS DIA+++L V + + V L G
Sbjct: 66 VTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPSTDVGV-------GTV 118
Query: 310 GTVIGWG--YDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
T GWG D +S+ L+ +PI+S+ C +D C
Sbjct: 119 VTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYGIV-----TDGNICIDS 167
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B
1qrz_A
Length = 247
Score = 123 bits (312), Expect = 1e-33
Identities = 59/238 (24%), Positives = 89/238 (37%), Gaps = 70/238 (29%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G WPW V+L G + CGG+L+S +V+TAAHC+ +K + +
Sbjct: 21 GCVAHPHSWPWQVSLRTRFG---MHFCGGTLISPEWVLTAAHCL-----EKSPRPSSYKV 72
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
LG + + + E VQ +V R+ + PT DIALL+LSS + V P CL
Sbjct: 73 ILGAHQEV--NLEPHVQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVIPACLP 124
Query: 142 ----------------W-----DDSTAPLQLSAVE--GTSVCNGDSGGGMVFKIDS---- 174
W L+ + + VCN ++ S
Sbjct: 125 SPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLN--GRVQSTELC 182
Query: 175 AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
A +L G D+ C GD+GG +V + L+G+ S
Sbjct: 183 AGHLAGGT------------DS------------CQGDAGGPLVCFEKDKYILQGVTS 216
Score = 75.7 bits (187), Expect = 6e-16
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 13/114 (11%)
Query: 248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEG 307
+V +V R+ + PT DIALL+LSS + V P CL +
Sbjct: 85 HVQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVIPACL-----PSPNYVVADR 133
Query: 308 RDGTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
+ + GWG + + LK A +P++ ++ C + +F + CAG
Sbjct: 134 TECFITGWGETQGTFGAGLLKEAQLPVIENKVC--NRYEFLNGRVQSTELCAGH 185
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 124 bits (314), Expect = 2e-33
Identities = 39/233 (16%), Positives = 70/233 (30%), Gaps = 31/233 (13%)
Query: 7 SCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCV 66
C L + + PW V L +EG CGG ++ N+V+T A C
Sbjct: 40 QCVPHDQCACGVLTSEKRAPDLQDLPWQVKLTNSEG---KDFCGGVIIRENFVLTTAKCS 96
Query: 67 TKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQL 126
+ + ++ VH++ +++ D++LL+L
Sbjct: 97 LL--------HRNITVKTYFNRT-----SQDPLMIKITHVHVHMRYDADAGENDLSLLEL 143
Query: 127 SSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
+ PVC + A L + SG D L +T+
Sbjct: 144 EWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLL----SGWARN-GTDLGNSLTT-RPVTL 197
Query: 187 ARDGLRVCDTKHYVVFTDV-------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
C V T + G + + +W+L G++
Sbjct: 198 VEG--EECGQVLNVTVTTRTYCERSSVAAMHWMDGSVVTREHRGSWFLTGVLG 248
Score = 88.2 bits (219), Expect = 3e-20
Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 7/107 (6%)
Query: 254 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVI 313
+ VH++ +++ D++LL+L + PVC + A L G +
Sbjct: 120 ITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIP--RTRGLLS 177
Query: 314 GWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAG 360
GW + L + +V ++C T+ T+C
Sbjct: 178 GWAR-NGTDLGNSLTTRPVTLVEGEEC---GQVLNVTVTTR-TYCER 219
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus}
PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A
1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A*
1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A
...
Length = 223
Score = 122 bits (309), Expect = 2e-33
Identities = 45/210 (21%), Positives = 74/210 (35%), Gaps = 70/210 (33%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G P+ V+L + CGGSL++ +V++AAHC + +
Sbjct: 4 GYTCGANTVPYQVSLNSG-----YHFCGGSLINSQWVVSAAHCYKSG----------IQV 48
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
LG+ + EG Q + ++P++NS+ DI L++L S + V + L
Sbjct: 49 RLGEDNI--NVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP 106
Query: 142 --------------W-----DDSTAPLQLSAVE--------------------------- 155
W ++ P L ++
Sbjct: 107 TSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYL 166
Query: 156 --GTSVCNGDSGGGMVFKIDSAWYLRGIVS 183
G C GDSGG +V + L+GIVS
Sbjct: 167 EGGKDSCQGDSGGPVV----CSGKLQGIVS 192
Score = 75.2 bits (186), Expect = 5e-16
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 13/116 (11%)
Query: 250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRD 309
F + ++P++NS+ DI L++L S + V + L + G
Sbjct: 63 QFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASA-------GTQ 115
Query: 310 GTVIGWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
+ GWG + LK PI+S C + Q TS+ FCAG+
Sbjct: 116 CLISGWGNTKSSGTSYPDVLKCLKAPILSDSSC---KSAYPGQITSN-MFCAGYLE 167
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody,
allosteric inhibitor, EGF-like DO glycoprotein,
hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo
sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Length = 248
Score = 123 bits (310), Expect = 3e-33
Identities = 51/245 (20%), Positives = 80/245 (32%), Gaps = 73/245 (29%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G + G PW A+Y C GSLV +V++AAHC + P D++ +
Sbjct: 4 GSSSLPGSHPWLAAIYIG-----DSFCAGSLVHTCWVVSAAHCFSHSP-----PRDSVSV 53
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSN-YLGDIALLQLSSD----VDYSMYVR 137
LG++ + Q +++ Y ++ N D+ L++L S +V+
Sbjct: 54 VLGQHFFN--RTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQ 111
Query: 138 PVCL-----------------W-----DDSTAPLQLSAVE----GTSVCNGDSGGGMVFK 171
P+CL W + S L C+ G
Sbjct: 112 PICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYG--AD 169
Query: 172 IDS----AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYL 227
I A Y D C GDSGG + + + YL
Sbjct: 170 ISPNMLCAGYFDCKS------------DA------------CQGDSGGPLACEKNGVAYL 205
Query: 228 RGIVS 232
GI+S
Sbjct: 206 YGIIS 210
Score = 72.3 bits (178), Expect = 8e-15
Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 14/124 (11%)
Query: 245 TKHYVVFTDVKRVHIYPTFNSSN-YLGDIALLQLSSD----VDYSMYVRPVCLWDDSTAP 299
T +++ Y ++ N D+ L++L S +V+P+CL
Sbjct: 63 TTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICL-----PE 117
Query: 300 LQLSAVEGRDGTVIGWGYDEND--RVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETF 357
+ G + GWG+ + + S L+ A++P+V+ +C S+P+ + S
Sbjct: 118 PGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKC--SSPEVYGADISPNML 175
Query: 358 CAGF 361
CAG+
Sbjct: 176 CAGY 179
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
b.47.1.2 PDB: 1fiz_A*
Length = 290
Score = 124 bits (312), Expect = 4e-33
Identities = 53/246 (21%), Positives = 91/246 (36%), Gaps = 65/246 (26%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSY--VCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTL 80
GQ A G WPW V+L N VCGGSL++ +++TAAHC K
Sbjct: 4 GQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIKK-----KVTDW 58
Query: 81 VIYLGKYHQHQFSD---EGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVR 137
+ G ++ + +Q + V+++ I+ +++S+ DIAL++++ V ++
Sbjct: 59 RLIFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIG 118
Query: 138 PVCL------------------W-----DDSTAPLQLSAVE----GTSVCNGDSGGGMVF 170
P CL W + L +CN
Sbjct: 119 PGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRWYNGRI 178
Query: 171 KIDS--AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMV--FKIDSAWY 226
+ + A Y G + DT C GDSGG ++ ++++
Sbjct: 179 RSTNVCAGYPEGKI------------DT------------CQGDSGGPLMCKDSAENSYV 214
Query: 227 LRGIVS 232
+ GI S
Sbjct: 215 VVGITS 220
Score = 80.1 bits (198), Expect = 3e-17
Identities = 25/119 (21%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 245 TKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSA 304
K + V+++ I+ +++S+ DIAL++++ V ++ P CL P +
Sbjct: 75 VKPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIGPGCLPQFRAGPPR--- 131
Query: 305 VEGRDGTVIGWGYDEND--RVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
+ V GWG+ + + R S L+ A + ++ C ++ ++++ CAG+
Sbjct: 132 -VPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLC--NSTRWYNGRIRSTNVCAGY 187
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating
factor-I, PPAF-I, serine proteas hydrolase; HET: NAG;
1.70A {Holotrichia diomphalia}
Length = 278
Score = 123 bits (311), Expect = 4e-33
Identities = 48/225 (21%), Positives = 82/225 (36%), Gaps = 66/225 (29%)
Query: 23 GQKTARGQWPWHVAL-YRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLV 81
G T ++PW + Y+ + CGGSL++ Y++TAAHCV + V
Sbjct: 26 GDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAHCVAGR--VLRVVGALNK 83
Query: 82 IYLGKYHQHQFSD---------EGGVQNKQVKRVHIYPTFN--SSNYLGDIALLQLSSDV 130
+ LG+++ D + ++ +P + S + DIAL++L+ V
Sbjct: 84 VRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYHDIALIRLNRQV 143
Query: 131 DYSMYVRPVCLWDDSTAP----------------------LQLSAVEGTS--VCN----- 161
+++ Y+RPVCL + Q AV C
Sbjct: 144 EFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRTETGQYSTIKQKLAVPVVHAEQCAKTFGA 203
Query: 162 ----------------------GDSGGG-MVFKIDSAWYLRGIVS 183
GDSGG + + + ++L G+VS
Sbjct: 204 AGVRVRSSQLCAGGEKAKDSCGGDSGGPLLAERANQQFFLEGLVS 248
Score = 88.9 bits (221), Expect = 2e-20
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 9/127 (7%)
Query: 238 DGLRVCDTKHYVVFTDVKRVHIYPTFN--SSNYLGDIALLQLSSDVDYSMYVRPVCLWDD 295
+RVC + ++ +P + S + DIAL++L+ V+++ Y+RPVCL
Sbjct: 99 GAVRVCVPDKPIDL-GIEETIQHPDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLPQP 157
Query: 296 STAPLQLSAVEGRDGTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDE 355
+ G+ TV+GWG E + S + +P+V +QC + +
Sbjct: 158 NEEVQ-----VGQRLTVVGWGRTETGQYSTIKQKLAVPVVHAEQCAKTFGAAGVRVR-SS 211
Query: 356 TFCAGFR 362
CAG
Sbjct: 212 QLCAGGE 218
Score = 38.4 bits (90), Expect = 0.002
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 209 CNGDSGGG-MVFKIDSAWYLRGIVS 232
C GDSGG + + + ++L G+VS
Sbjct: 224 CGGDSGGPLLAERANQQFFLEGLVS 248
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation,
hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC;
1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A*
2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A*
3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Length = 245
Score = 122 bits (308), Expect = 4e-33
Identities = 59/220 (26%), Positives = 81/220 (36%), Gaps = 69/220 (31%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
GQ+ R +WPW V+L R + CGGSL+ +V+TAAHCV D TL +
Sbjct: 4 GQEAPRSKWPWQVSL-RVRDRYWMHFCGGSLIHPQWVLTAAHCV----GPDVKDLATLRV 58
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
L + H Q V R+ ++P F DIALL+L V+ S V V L
Sbjct: 59 QLREQHL-----YYQDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLP 113
Query: 142 ----------------W-----DDSTAP---LQLSAVE--GTSVCN-------------- 161
W D+ P L+ V +C+
Sbjct: 114 PASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVR 173
Query: 162 ------------------GDSGGGMVFKIDSAWYLRGIVS 183
GDSGG +V K++ W G+VS
Sbjct: 174 IIRDDMLCAGNSQRDSCQGDSGGPLVCKVNGTWLQAGVVS 213
Score = 75.4 bits (186), Expect = 7e-16
Identities = 32/125 (25%), Positives = 45/125 (36%), Gaps = 13/125 (10%)
Query: 244 DTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLS 303
+ V R+ ++P F DIALL+L V+ S V V L P +
Sbjct: 64 HLYYQDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVML-----PPASET 118
Query: 304 AVEGRDGTVIGWG---YDENDRVSEELKMAIMPIVSHQQC--LWSNPQFFSQFTS---DE 355
G V GWG DE LK +PI+ + C + + D+
Sbjct: 119 FPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDD 178
Query: 356 TFCAG 360
CAG
Sbjct: 179 MLCAG 183
Score = 40.7 bits (96), Expect = 3e-04
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 209 CNGDSGGGMVFKIDSAWYLRGIVS 232
C GDSGG +V K++ W G+VS
Sbjct: 190 CQGDSGGPLVCKVNGTWLQAGVVS 213
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 242
Score = 122 bits (308), Expect = 4e-33
Identities = 55/233 (23%), Positives = 88/233 (37%), Gaps = 49/233 (21%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
GQK G +PW V + G+L+ N+V+TAAH V Y++ D+ L I
Sbjct: 4 GQKAKPGDFPWQVLILG------GTTAAGALLYDNWVLTAAHAV----YEQKHDASALDI 53
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCL 141
+G + + V I+ + + + DIAL++L++ V + + P+CL
Sbjct: 54 RMGTLKRL----SPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICL 109
Query: 142 WDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRG----IVSITVARDGLRVCDTK 197
A + + + SG G+ + A L IV C
Sbjct: 110 -PRKEAESFMRTDDIGTA----SGWGLTQRGFLARNLMYVDIPIVDHQ-------KCTAA 157
Query: 198 HYVVFTDVANV----------------CNGDSGGGMVFKI--DSAWYLRGIVS 232
+ +V C GDSGG +VF W++ GIVS
Sbjct: 158 YEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVS 210
Score = 90.4 bits (225), Expect = 3e-21
Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Query: 245 TKHYVVFTDVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCL-WDDSTAPLQL 302
+ + V I+ + + + DIAL++L++ V + + P+CL ++ + ++
Sbjct: 61 LSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMR- 119
Query: 303 SAVEGRDGTVIGWGYDENDRVSEELKMAIMPIVSHQQC--LWSNPQFFSQFTSDETFCAG 360
GT GWG + ++ L +PIV HQ+C + P + + CAG
Sbjct: 120 ---TDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAG 176
Query: 361 FRN 363
+
Sbjct: 177 LES 179
>2asu_B Hepatocyte growth factor-like protein; serine proteinase,
beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Length = 234
Score = 121 bits (307), Expect = 6e-33
Identities = 40/204 (19%), Positives = 67/204 (32%), Gaps = 62/204 (30%)
Query: 29 GQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYH 88
G PW V+L +G + CGGSLV +++TA C + ++LG
Sbjct: 7 GNSPWTVSLRNRQG---QHFCGGSLVKEQWILTARQCF----SSCHMPLTGYEVWLGTLF 59
Query: 89 QHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL------- 141
Q+ E +Q V ++ P+ + + LL+L V + V +CL
Sbjct: 60 QNPQHGEPSLQRVPVAKMVCGPSGS------QLVLLKLERSVTLNQRVALICLPPEWYVV 113
Query: 142 ----------W-----DDSTAPLQLSAVE---------------------------GTSV 159
W + L ++ +
Sbjct: 114 PPGTKCEIAGWGETKGTGNDTVLNVALLNVISNQECNIKHRGRVRESEMCTEGLLAPVGA 173
Query: 160 CNGDSGGGMVFKIDSAWYLRGIVS 183
C GD GG + ++W L GI+
Sbjct: 174 CEGDYGGPLACFTHNSWVLEGIII 197
Score = 70.3 bits (173), Expect = 3e-14
Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 15/113 (13%)
Query: 249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGR 308
+ V ++ P+ + + LL+L V + V +CL P G
Sbjct: 69 LQRVPVAKMVCGPSGS------QLVLLKLERSVTLNQRVALICL-----PPEWYVVPPGT 117
Query: 309 DGTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
+ GWG + L +A++ ++S+Q+C N + + E C
Sbjct: 118 KCEIAGWGETKGTGNDTVLNVALLNVISNQEC---NIKHRGRVRESE-MCTEG 166
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 124 bits (312), Expect = 8e-33
Identities = 51/243 (20%), Positives = 83/243 (34%), Gaps = 67/243 (27%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
GQK G +PW V G GG+L+ +++TAAH + + + +L +
Sbjct: 93 GQKAKMGNFPWQVFT-NIHGR-----GGGALLGDRWILTAAHTL-YPKEHEAQSNASLDV 145
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFN---SSNYLGDIALLQLSSDVDYSMYVRPV 139
+LG + + N ++RV ++P + S N+ GDIALL+L + V + P+
Sbjct: 146 FLGHTNVEELMKL---GNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPI 202
Query: 140 CL-----------------W----DDSTAPLQLSAVE--GTSVCNGD-SGGGMVFKIDS- 174
CL + + L+ + C G +
Sbjct: 203 CLPDNDTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQN 262
Query: 175 ---AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSA--WYLRG 229
A + D C GDSGG + + W G
Sbjct: 263 MFCAGHPSLKQ------------DA------------CQGDSGGVFAVRDPNTDRWVATG 298
Query: 230 IVS 232
IVS
Sbjct: 299 IVS 301
Score = 87.1 bits (216), Expect = 2e-19
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 10/114 (8%)
Query: 254 VKRVHIYPTFN---SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDG 310
++RV ++P + S N+ GDIALL+L + V + P+CL D+ T G G
Sbjct: 163 IRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFY-----DLGLMG 217
Query: 311 TVIGWGYDENDRVSEELKMAIMPIVSHQQC-LWSNPQFFSQFTSDETFCAGFRN 363
V G+G ++++ +L+ +P+ + Q C W + S FCAG +
Sbjct: 218 YVSGFGV-MEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPS 270
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB:
1ybw_A 2r0k_A
Length = 283
Score = 122 bits (308), Expect = 1e-32
Identities = 51/245 (20%), Positives = 80/245 (32%), Gaps = 73/245 (29%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G + G PW A+Y C GSLV +V++AAHC + P D++ +
Sbjct: 39 GSSSLPGSHPWLAAIYIG-----DSFCAGSLVHTCWVVSAAHCFSHSP-----PRDSVSV 88
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSN-YLGDIALLQLSSD----VDYSMYVR 137
LG++ + Q +++ Y ++ N D+ L++L S +V+
Sbjct: 89 VLGQHFFN--RTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQ 146
Query: 138 PVCL-----------------W-----DDSTAPLQLSAVE----GTSVCNGDSGGGMVFK 171
P+CL W + S L C+ G
Sbjct: 147 PICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYG--AD 204
Query: 172 IDS----AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYL 227
I A Y D C GDSGG + + + YL
Sbjct: 205 ISPNMLCAGYFDCKS------------DA------------CQGDSGGPLACEKNGVAYL 240
Query: 228 RGIVS 232
GI+S
Sbjct: 241 YGIIS 245
Score = 73.1 bits (180), Expect = 7e-15
Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 14/124 (11%)
Query: 245 TKHYVVFTDVKRVHIYPTFNSSN-YLGDIALLQLSSD----VDYSMYVRPVCLWDDSTAP 299
T +++ Y ++ N D+ L++L S +V+P+CL
Sbjct: 98 TTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICL-----PE 152
Query: 300 LQLSAVEGRDGTVIGWGYDEND--RVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETF 357
+ G + GWG+ + + S L+ A++P+V+ +C S+P+ + S
Sbjct: 153 PGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKC--SSPEVYGADISPNML 210
Query: 358 CAGF 361
CAG+
Sbjct: 211 CAGY 214
>2xw9_A Complement factor D; immune system, hydrolase, serine protease,
alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB:
2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A
1fdp_A 2xwa_A 1dst_A 4d9q_A
Length = 228
Score = 120 bits (304), Expect = 2e-32
Identities = 47/236 (19%), Positives = 77/236 (32%), Gaps = 72/236 (30%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G++ P+ ++ +N +++CGG LV+ +V++AAHC+ + + +
Sbjct: 4 GREAEAHARPYMASVQ----LNGAHLCGGVLVAEQWVLSAAHCL------EDAADGKVQV 53
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
LG + E + V R +P D+ LLQLS VRP+
Sbjct: 54 LLGAHSL--SQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQ 111
Query: 142 --------------------WDDSTAPLQLSAVE-------------------------- 155
P L V
Sbjct: 112 RVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCA 171
Query: 156 ---GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VVFTDVAN 207
C GD+GG +V L G+V+ G RVC + ++T VA+
Sbjct: 172 ESNRRDSCKGDAGGPLVCG----GVLEGVVTS-----GSRVCGNRKKPGIYTRVAS 218
Score = 76.1 bits (188), Expect = 3e-16
Identities = 25/115 (21%), Positives = 38/115 (33%), Gaps = 14/115 (12%)
Query: 250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRD 309
DV R +P D+ LLQLS VRP+
Sbjct: 68 RLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDV--------AP 119
Query: 310 GT---VIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAG 360
GT V GWG + R + L+ ++P++ C + ++ CA
Sbjct: 120 GTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATC--NRRTHHDGAITERLMCAE 172
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A,
LUNG; chymotrypsin homology, hormone/growth factor
complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Length = 240
Score = 120 bits (304), Expect = 2e-32
Identities = 42/234 (17%), Positives = 74/234 (31%), Gaps = 68/234 (29%)
Query: 26 TARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLG 85
R W V+L R ++CGGSL+ ++V+TA C D +LG
Sbjct: 6 PTRTNIGWMVSL-RYRN---KHICGGSLIKESWVLTARQCF------PSRDLKDYEAWLG 55
Query: 86 KYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL---- 141
+ H DE Q V ++ P + D+ L++L+ +V + L
Sbjct: 56 IHDVHGRGDEKCKQVLNVSQLVYGPEGS------DLVLMKLARPAVLDDFVSTIDLPNYG 109
Query: 142 -------------W-----DDSTAPLQLSAVE--GTSVCNGDSGGGMVFKIDS---AWYL 178
W + L+++ + G C+ G + +S A
Sbjct: 110 STIPEKTSCSVYGWGYTGLINYDGLLRVAHLYIMGNEKCSQHHRGKVTLN-ESEICAGAE 168
Query: 179 RGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
+ C GD GG +V + + G++
Sbjct: 169 KIGSG------------------------PCEGDYGGPLVCEQHKMRMVLGVIV 198
Score = 68.0 bits (167), Expect = 2e-13
Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 19/116 (16%)
Query: 249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGR 308
+V ++ P + D+ L++L+ +V + L + E
Sbjct: 68 KQVLNVSQLVYGPEGS------DLVLMKLARPAVLDDFVSTIDL-----PNYGSTIPEKT 116
Query: 309 DGTVIGWGYDENDRVSEELKMAIMPIVSHQQC---LWSNPQFFSQFTSDETFCAGF 361
+V GWGY L++A + I+ +++C E CAG
Sbjct: 117 SCSVYGWGYTGLINYDGLLRVAHLYIMGNEKCSQHHRGK----VTLNESE-ICAGA 167
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 124 bits (313), Expect = 2e-32
Identities = 56/229 (24%), Positives = 89/229 (38%), Gaps = 41/229 (17%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
GQK G +PW V + G+L+ N+V+TAAH V Y++ D+ L I
Sbjct: 165 GQKAKPGDFPWQVLILG------GTTAAGALLYDNWVLTAAHAV----YEQKHDASALDI 214
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCL 141
+G + + V I+ + + + DIAL++L++ V + + P+CL
Sbjct: 215 RMGTLKRL----SPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICL 270
Query: 142 WDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVV 201
+ GT SG G+ + A L V I + + C +
Sbjct: 271 PRKEAESFMRTDDIGT-A----SGWGLTQRGFLARNLMY-VDIPIV--DHQKCTAAYEKP 322
Query: 202 FTDVANV----------------CNGDSGGGMVFKI--DSAWYLRGIVS 232
+V C GDSGG +VF W++ GIVS
Sbjct: 323 PYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVS 371
Score = 92.1 bits (229), Expect = 6e-21
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCL-WDDSTAPLQLSAVEGRDGT 311
+ V I+ + + + DIAL++L++ V + + P+CL ++ + ++ GT
Sbjct: 231 SEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMR----TDDIGT 286
Query: 312 VIGWGYDENDRVSEELKMAIMPIVSHQQC---LWSNPQFFSQFTSDETFCAGF 361
GWG + ++ L +PIV HQ+C P T++ CAG
Sbjct: 287 ASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANM-LCAGL 338
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase;
2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Length = 240
Score = 120 bits (304), Expect = 2e-32
Identities = 44/239 (18%), Positives = 78/239 (32%), Gaps = 68/239 (28%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G++ + P+ ++ +VCGG L+ +V+TAAHC + + +
Sbjct: 6 GKEVSPHSRPFMASIQ----YGGHHVCGGVLIDPQWVLTAAHC-----QYRFTKGQSPTV 56
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
LG + + +E Q ++K+ + S DI L++L + + +V+ + +
Sbjct: 57 VLGAHSLSK--NEASKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIR 114
Query: 142 ---------------W-----DDSTAPLQLSAVE----GTSVCNGDSGGGMVFKIDS--- 174
W D L V +CN S I
Sbjct: 115 SKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMV 174
Query: 175 -AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
A +G D+ C GD+GG ++ K IVS
Sbjct: 175 CAGDAKGQK------------DS------------CKGDAGGPLICK----GVFHAIVS 205
Score = 77.6 bits (192), Expect = 9e-17
Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 8/110 (7%)
Query: 254 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVI 313
+K+ + S DI L++L + + +V+ + + ++ G V
Sbjct: 75 IKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLR------SGTKCKVT 128
Query: 314 GWGYDEND--RVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
GWG + D R S+ L+ + ++S + C + F + + CAG
Sbjct: 129 GWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGD 178
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6,
benzamidine, protease, brain serine protease,
myelencephalon specific protease, MSP, ZYME; 1.56A {Homo
sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Length = 223
Score = 119 bits (302), Expect = 2e-32
Identities = 52/220 (23%), Positives = 87/220 (39%), Gaps = 42/220 (19%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G + P+ ALY + +CGG L+ +V+TAAHC L +
Sbjct: 4 GGPCDKTSHPYQAALYTSGH----LLCGGVLIHPLWVLTAAHCKKPN----------LQV 49
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
+LGK++ E + V R I+P ++++++ DI LL+L+ S ++P+ L
Sbjct: 50 FLGKHNL--RQRESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLE 107
Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
D +A + G G D ++ I + C+ +
Sbjct: 108 RDCSANTTSCHI---------LGWGKTADGDFPDTIQC-AYIHLVSR--EECEHAYPGQI 155
Query: 203 TDV----------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
T + C GDSGG +V +LRG+VS
Sbjct: 156 TQNMLCAGDEKYGKDSCQGDSGGPLVCG----DHLRGLVS 191
Score = 80.3 bits (199), Expect = 7e-18
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
V R I+P ++++++ DI LL+L+ S ++P+ L D +A +
Sbjct: 67 SVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCSAN-------TTSCHI 119
Query: 313 IGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
+GWG + + ++ A + +VS ++C + P + CAG
Sbjct: 120 LGWGKTADGDFPDTIQCAYIHLVSREECEHAYPGQI----TQNMLCAGD 164
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation;
1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Length = 230
Score = 119 bits (302), Expect = 3e-32
Identities = 58/234 (24%), Positives = 92/234 (39%), Gaps = 69/234 (29%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G + G +P+ L T CGGSL+ +++TAAHCV D+ ++V+
Sbjct: 4 GYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVH--------DAVSVVV 55
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
YLG Q++ G +R+ + FN YL D+AL+++ V+Y+ ++P+ L
Sbjct: 56 YLGSAVQYE-----GEAVVNSERIISHSMFNPDTYLNDVALIKIPH-VEYTDNIQPIRLP 109
Query: 142 ------------------W---DDSTAPLQ---------------------------LSA 153
W + T LQ
Sbjct: 110 SGEELNNKFENIWATVSGWGQSNTDTVILQYTYNLVIDNDRCAQEYPPGIIVESTICGDT 169
Query: 154 VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVAN 207
+G S C GDSGG V + L G+VS V+ G C++ V F+ V +
Sbjct: 170 SDGKSPCFGDSGGPFV--LSDKNLLIGVVSF-VSGAG---CESGKPVGFSRVTS 217
Score = 69.1 bits (170), Expect = 8e-14
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 254 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVI 313
+R+ + FN YL D+AL+++ V+Y+ ++P+ L + + E TV
Sbjct: 71 SERIISHSMFNPDTYLNDVALIKIPH-VEYTDNIQPIRL---PSGEELNNKFENIWATVS 126
Query: 314 GWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAG 360
GWG D + L+ ++ + +C ++ + T C
Sbjct: 127 GWGQSNTD--TVILQYTYNLVIDNDRC---AQEYPPGIIVESTICGD 168
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin
binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2
PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Length = 225
Score = 119 bits (301), Expect = 3e-32
Identities = 41/227 (18%), Positives = 68/227 (29%), Gaps = 64/227 (28%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G+K Q+P+ ++ + +G + CGG+L+ +V+TAA C + + +
Sbjct: 4 GRKARPRQFPFLASI-QNQG---RHFCGGALIHARFVMTAASCF------QSQNPGVSTV 53
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
LG Y E + ++ L D+ LLQL + + + V + L
Sbjct: 54 VLGAYDL--RRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLP 111
Query: 142 --------------------WDDSTAPLQLSAVE---------------------GTSVC 160
V +C
Sbjct: 112 LQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRPNNVCTGVLTRRGGIC 171
Query: 161 NGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVAN 207
NGD G +V + G+ S L C FT VA
Sbjct: 172 NGDGGTPLVCE----GLAHGVASF-----SLGPCGRG-PDFFTRVAL 208
Score = 72.2 bits (178), Expect = 7e-15
Identities = 25/116 (21%), Positives = 37/116 (31%), Gaps = 24/116 (20%)
Query: 250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRD 309
T ++ L D+ LLQL + + + V + L PLQ + V
Sbjct: 68 RQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPL------PLQNATV--EA 119
Query: 310 GT---VIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
GT V GWG R+S + + + QC C G
Sbjct: 120 GTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQC------------RPNNVCTGV 163
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine
proteinases, trypsin-like serine protease, tumor marker,
hydrolase; 1.61A {Homo sapiens}
Length = 232
Score = 119 bits (301), Expect = 3e-32
Identities = 51/240 (21%), Positives = 85/240 (35%), Gaps = 71/240 (29%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G + G+WPW +L + S+ CG +L++ ++++AAHC T +
Sbjct: 4 GTEVEEGEWPWQASLQW----DGSHRCGATLINATWLVSAAHCFTTYK-----NPARWTA 54
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
G + + ++R+ ++ + ++ DI+L +LSS V Y+ V VCL
Sbjct: 55 SFGVTIK------PSKMKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLP 108
Query: 142 ----------------W----DDSTAPLQLSAVE----GTSVCNG-DSGGGMVFKIDS-- 174
+ +D + L + + CN + +
Sbjct: 109 DASYEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAIT--PRML 166
Query: 175 -AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMV-FKIDSAWYLRGIVS 232
A L G D C GDSGG +V WYL GIVS
Sbjct: 167 CAGSLEGKT------------DA------------CQGDSGGPLVSSDARDIWYLAGIVS 202
Score = 79.2 bits (196), Expect = 2e-17
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 254 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVI 313
++R+ ++ + ++ DI+L +LSS V Y+ V VCL D S G V
Sbjct: 69 LRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLPDASYEF-----QPGDVMFVT 123
Query: 314 GWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
G+G + L+ A + ++ C + PQ ++ + CAG
Sbjct: 124 GFGALKNDGYSQNHLRQAQVTLIDATTC--NEPQAYNDAITPRMLCAGS 170
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural
proteo europe, spine, structural genomics, hydrolase;
HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Length = 223
Score = 119 bits (301), Expect = 3e-32
Identities = 49/233 (21%), Positives = 74/233 (31%), Gaps = 72/233 (30%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G+ + PW AL C G LV +V++AAHC ++ I
Sbjct: 4 GEDCSPHSQPWQAALVMENE----LFCSGVLVHPQWVLSAAHCF----------QNSYTI 49
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
LG H + E G Q + +P +N D+ L++L V S +R + +
Sbjct: 50 GLGL-HSLEADQEPGSQMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISIA 108
Query: 142 --------------W---DDSTAPLQLSAVE----------------------------- 155
W + P L V
Sbjct: 109 SQCPTAGNSCLVSGWGLLANGRMPTVLQCVNVSVVSEEVCSKLYDPLYHPSMFCAGGGQD 168
Query: 156 GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VVFTDVAN 207
CNGDSGG ++ YL+G+VS G C V+T++
Sbjct: 169 QKDSCNGDSGGPLICN----GYLQGLVSF-----GKAPCGQVGVPGVYTNLCK 212
Score = 76.8 bits (190), Expect = 1e-16
Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 11/112 (9%)
Query: 250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRD 309
+ +P +N D+ L++L V S +R + + G
Sbjct: 65 QMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISIASQCPTA-------GNS 117
Query: 310 GTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
V GWG N R+ L+ + +VS + C + + + FCAG
Sbjct: 118 CLVSGWGLLANGRMPTVLQCVNVSVVSEEVC---SKLYDPLYHPS-MFCAGG 165
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation,
hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG;
2.30A {Homo sapiens} PDB: 2psy_A*
Length = 227
Score = 119 bits (301), Expect = 3e-32
Identities = 47/234 (20%), Positives = 72/234 (30%), Gaps = 72/234 (30%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G PW AL CG LV +++TAAHC +
Sbjct: 4 GSDCDMHTQPWQAALLLRPN---QLYCGAVLVHPQWLLTAAHCR----------KKVFRV 50
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
LG Y E G Q Q + +P ++ + D+ L++L+ + + VRP+ +
Sbjct: 51 RLGHYSLSP-VYESGQQMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPINVS 109
Query: 142 --------------W-----DDSTAPLQLSAVE--------------------------- 155
W P L +
Sbjct: 110 SHCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPRQIDDTMFCAGDK 169
Query: 156 -GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VVFTDVAN 207
G C GDSGG +V L+G+VS G C + V+T++
Sbjct: 170 AGRDSCQGDSGGPVVCN----GSLQGLVSW-----GDYPCARPNRPGVYTNLCK 214
Score = 72.2 bits (178), Expect = 7e-15
Identities = 20/111 (18%), Positives = 43/111 (38%), Gaps = 13/111 (11%)
Query: 254 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVI 313
+ +P ++ + D+ L++L+ + + VRP+ + + G V
Sbjct: 70 GVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPINVSSHCPSA-------GTKCLVS 122
Query: 314 GWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
GWG + L+ + ++S ++C + Q FCAG +
Sbjct: 123 GWGTTKSPQVHFPKVLQCLNISVLSQKRC---EDAYPRQIDDT-MFCAGDK 169
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein,
zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo
sapiens} SCOP: b.47.1.2
Length = 221
Score = 119 bits (300), Expect = 4e-32
Identities = 50/227 (22%), Positives = 84/227 (37%), Gaps = 61/227 (26%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G + P+ +L + G S+ CGG+L+ ++V+TAAHC+ + + + +
Sbjct: 4 GHEAQPHSRPYMASL-QMRGNPGSHFCGGTLIHPSFVLTAAHCL------RDIPQRLVNV 56
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
LG ++ + E Q+ V +V +++ N L DI L+QLSS + S V V L
Sbjct: 57 VLGAHNV--RTQEPTQQHFSVAQV-FLNNYDAENKLNDILLIQLSSPANLSASVATVQLP 113
Query: 142 --------------------WDDSTAPLQLSAVE--------------------GTSVCN 161
L + +C
Sbjct: 114 QQDQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVTFFCRPHNICTFVPRRKAGICF 173
Query: 162 GDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VVFTDVAN 207
GDSGG ++ ++GI S + C T+ + FT VA
Sbjct: 174 GDSGGPLICD----GIIQGIDSF-----VIWGCATRLFPDFFTRVAL 211
Score = 61.4 bits (150), Expect = 3e-11
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 13/90 (14%)
Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGT- 311
V +V +++ N L DI L+QLSS + S V V L P Q V GT
Sbjct: 74 SVAQV-FLNNYDAENKLNDILLIQLSSPANLSASVATVQL------PQQDQPV--PHGTQ 124
Query: 312 --VIGWGY-DENDRVSEELKMAIMPIVSHQ 338
+GWG +D ++ L+ + +V+
Sbjct: 125 CLAMGWGRVGAHDPPAQVLQELNVTVVTFF 154
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage,
salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar}
SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A
2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A
2eek_A
Length = 222
Score = 119 bits (300), Expect = 5e-32
Identities = 50/209 (23%), Positives = 76/209 (36%), Gaps = 69/209 (33%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G + P V+L + CGGSLV+ N+V++AAHC + + +
Sbjct: 4 GYECKAYSQPHQVSLNSG-----YHFCGGSLVNENWVVSAAHCYKSR----------VEV 48
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
LG+++ EG Q RV +P ++S N DI L++LS + YV+PV L
Sbjct: 49 RLGEHNI--KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP 106
Query: 142 --------------W----DDSTAPLQLSAVE---------------------------- 155
W + +L +
Sbjct: 107 TSCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLE 166
Query: 156 -GTSVCNGDSGGGMVFKIDSAWYLRGIVS 183
G C GDSGG +V L+G+VS
Sbjct: 167 GGKDSCQGDSGGPVVCN----GELQGVVS 191
Score = 77.5 bits (192), Expect = 8e-17
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 12/114 (10%)
Query: 249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGR 308
F RV +P ++S N DI L++LS + YV+PV L G
Sbjct: 62 EQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAPA-------GT 114
Query: 309 DGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
TV GWG + S +L+ +PI+S+ C S P T+ FCAG+
Sbjct: 115 MCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYP---GMITNA-MFCAGY 164
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human
complement system, glycoprotein, SP, VWFA,; HET: NAG;
1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Length = 509
Score = 124 bits (313), Expect = 7e-32
Identities = 50/246 (20%), Positives = 85/246 (34%), Gaps = 53/246 (21%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
+ + + PWHV + C G+L+S +V+TAAHC D +
Sbjct: 227 ANASDQERTPWHVTIKP----KSQETCRGALISDQWVLTAAHCFRDGN-----DHSLWRV 277
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS---------NYLGDIALLQLSSDVDYS 133
+G + +++ I P F+ Y DIALL+L+ V S
Sbjct: 278 NVGDPKSQ------WGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMS 331
Query: 134 MYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR----GIVSITVARD 189
+ RP+CL A L L +G++ D ++ K + ++I +
Sbjct: 332 THARPICLPCTMEANLALRRPQGSTC--RDHENELLNKQSVPAHFVALNGSKLNINLKMG 389
Query: 190 GLR-VCDTKHYVVFTDVANV----------------------CNGDSGGGMVFKIDSAWY 226
C T N+ C G+SGG + + ++
Sbjct: 390 VEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQEDESPCKGESGGAVFLERRFRFF 449
Query: 227 LRGIVS 232
G+VS
Sbjct: 450 QVGLVS 455
Score = 69.6 bits (170), Expect = 3e-13
Identities = 28/136 (20%), Positives = 45/136 (33%), Gaps = 26/136 (19%)
Query: 254 VKRVHIYPTFNSS---------NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSA 304
+++ I P F+ Y DIALL+L+ V S + RP+CL A L L
Sbjct: 292 IEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTMEANLALRR 351
Query: 305 VEGRDGTVIGWGYDENDRVSE--------ELKMAIMPIVSHQQC--LWSNPQFFSQFTSD 354
+G V +L + + V C + S + +D
Sbjct: 352 PQGSTCRDHENELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTD 411
Query: 355 ET-------FCAGFRN 363
C+G +
Sbjct: 412 VREVVTDQFLCSGTQE 427
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor,
disease mutation glycoprotein, hydrolase, zymogen,
secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP:
b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A*
1hne_E 2rg3_A* 1b0f_A*
Length = 218
Score = 118 bits (298), Expect = 8e-32
Identities = 47/227 (20%), Positives = 77/227 (33%), Gaps = 64/227 (28%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G++ WP+ V+L + + CG +L++ N+V++AAHCV V+ + +
Sbjct: 4 GRRARPHAWPFMVSLQ----LRGGHFCGATLIAPNFVMSAAHCV------ANVNVRAVRV 53
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
LG ++ E Q V+R+ ++ N L DI +LQL+ + V+ L
Sbjct: 54 VLGAHNL--SRREPTRQVFAVQRI-FENGYDPVNLLNDIVILQLNGSATINANVQVAQLP 110
Query: 142 --------------------WDDSTAPLQLSAVE--------------------GTSVCN 161
+ L + VC
Sbjct: 111 AQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSNVCTLVRGRQAGVCF 170
Query: 162 GDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VVFTDVAN 207
GDSG +V + GI S C + Y F VA
Sbjct: 171 GDSGSPLVCN----GLIHGIASF-----VRGGCASGLYPDAFAPVAQ 208
Score = 63.3 bits (155), Expect = 7e-12
Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 22/111 (19%)
Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVE-GRDGT 311
V+R+ ++ N L DI +LQL+ + V+ L P Q + G
Sbjct: 71 AVQRI-FENGYDPVNLLNDIVILQLNGSATINANVQVAQL------PAQGRRLGNGVQCL 123
Query: 312 VIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
+GWG N ++ L+ + +V+ C C
Sbjct: 124 AMGWGLLGRNRGIASVLQELNVTVVT-SLC------------RRSNVCTLV 161
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 122 bits (308), Expect = 8e-32
Identities = 53/243 (21%), Positives = 85/243 (34%), Gaps = 67/243 (27%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
GQK G +PW V G GG+L+ +++TAAH + K + + +L +
Sbjct: 161 GQKAKMGNFPWQVFT-NIHGR-----GGGALLGDRWILTAAHTLYPKE-HEAQSNASLDV 213
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFN---SSNYLGDIALLQLSSDVDYSMYVRPV 139
+LG + + N ++RV ++P + S N+ GDIALL+L + V + P+
Sbjct: 214 FLGHTNVEELMKL---GNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPI 270
Query: 140 CL-----------------W----DDSTAPLQLSAVE--GTSVCNGDSGGGMVFKIDS-- 174
CL + + L+ + C G + S
Sbjct: 271 CLPDNDTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQN 330
Query: 175 ---AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSA--WYLRG 229
A + D C GDSGG + + W G
Sbjct: 331 MFCAGHPSLKQ------------DA------------CQGDSGGVFAVRDPNTDRWVATG 366
Query: 230 IVS 232
IVS
Sbjct: 367 IVS 369
Score = 87.6 bits (217), Expect = 2e-19
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 10/114 (8%)
Query: 254 VKRVHIYPTFN---SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDG 310
++RV ++P + S N+ GDIALL+L + V + P+CL D+ T G G
Sbjct: 231 IRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFY-----DLGLMG 285
Query: 311 TVIGWGYDENDRVSEELKMAIMPIVSHQQC-LWSNPQFFSQFTSDETFCAGFRN 363
V G+G ++++ +L+ +P+ + Q C W + S FCAG +
Sbjct: 286 YVSGFGV-MEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPS 338
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease;
1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Length = 240
Score = 118 bits (299), Expect = 9e-32
Identities = 46/214 (21%), Positives = 74/214 (34%), Gaps = 61/214 (28%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G+ W W V+L + + CGGSL++ ++V+TA HC++ S T +
Sbjct: 2 GEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCIS--------TSRTYQV 53
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYL--GDIALLQLSSDVDYSMYVRPVC 140
LG+Y + V + ++P +NS+ DIAL++LS V+
Sbjct: 54 VLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLAN 113
Query: 141 L---------------------WDDSTAPLQLSAVE------------------------ 155
L + P +L
Sbjct: 114 LPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGITVKKTMV 173
Query: 156 -----GTSVCNGDSGGGMV-FKIDSAWYLRGIVS 183
S CNGDSGG + D +W + G+ S
Sbjct: 174 CAGGDTRSGCNGDSGGPLNCPAADGSWQVHGVTS 207
Score = 73.0 bits (180), Expect = 4e-15
Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 10/116 (8%)
Query: 249 VVFTDVKRVHIYPTFNSSNYL--GDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVE 306
V+ + + ++P +NS+ DIAL++LS V+ L
Sbjct: 69 VIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDIL-----PN 123
Query: 307 GRDGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
+ GWG + ++L+ A++P V ++ C S ++ CAG
Sbjct: 124 EAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHC--SQWDWWGITVKKTMVCAGG 177
Score = 37.6 bits (88), Expect = 0.004
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 209 CNGDSGGGMV-FKIDSAWYLRGIVS 232
CNGDSGG + D +W + G+ S
Sbjct: 183 CNGDSGGPLNCPAADGSWQVHGVTS 207
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 120 bits (303), Expect = 1e-31
Identities = 38/249 (15%), Positives = 68/249 (27%), Gaps = 70/249 (28%)
Query: 7 SCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCV 66
C L + + PW V L +EG CGG ++ N+V+T A C
Sbjct: 81 QCVPHDQCACGVLTSEKRAPDLQDLPWQVKLTNSEG---KDFCGGVIIRENFVLTTAKCS 137
Query: 67 TKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQL 126
+ + ++ VH++ +++ D++LL+L
Sbjct: 138 LL--------HRNITVKTYFNRT-----SQDPLMIKITHVHVHMRYDADAGENDLSLLEL 184
Query: 127 SSDVDYSMYVRPVCL--------------------W----DDSTAPLQLSAVE------- 155
+ PVC W D L V
Sbjct: 185 EWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWARNGTDLGNSLTTRPVTLVEGEEC 244
Query: 156 -----------------GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKH 198
+ + G + + +W+L G++ V H
Sbjct: 245 GQVLNVTVTTRTYCERSSVAAMHWMDGSVVTREHRGSWFLTGVLG------SQPVGGQAH 298
Query: 199 YVVFTDVAN 207
V+ T V+
Sbjct: 299 MVLVTKVSR 307
Score = 87.8 bits (218), Expect = 9e-20
Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 7/117 (5%)
Query: 244 DTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLS 303
T + + VH++ +++ D++LL+L + PVC + A L
Sbjct: 151 RTSQDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLI 210
Query: 304 AVEGRDGTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAG 360
G + GW + L + +V ++C Q + + T+C
Sbjct: 211 P--RTRGLLSGWAR-NGTDLGNSLTTRPVTLVEGEECG----QVLNVTVTTRTYCER 260
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate
conformations, alternative splicing, glycoprotein,
hydrolase, protease, secreted; HET: K7J; 1.00A {Homo
sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Length = 224
Score = 118 bits (297), Expect = 1e-31
Identities = 50/210 (23%), Positives = 76/210 (36%), Gaps = 71/210 (33%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G ARG PW VAL CGG LV+ +V+TAAHC + +
Sbjct: 4 GAPCARGSHPWQVALLSGNQ----LHCGGVLVNERWVLTAAHCKMNE----------YTV 49
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
+LG + Q + + +P +++ ++ D+ L++L+S S V+ V L
Sbjct: 50 HLGSDTL----GDRRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLP 105
Query: 142 --------------W-----DDSTAPLQLSAVE--------------------------- 155
W D T P L V+
Sbjct: 106 SRCEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLLENSMLCAGIP 165
Query: 156 --GTSVCNGDSGGGMVFKIDSAWYLRGIVS 183
+ CNGDSGG +V + L+G+VS
Sbjct: 166 DSKKNACNGDSGGPLVCR----GTLQGLVS 191
Score = 72.6 bits (179), Expect = 5e-15
Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 13/110 (11%)
Query: 254 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVI 313
+ +P +++ ++ D+ L++L+S S V+ V L P G TV
Sbjct: 66 ASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCEPP-------GTTCTVS 118
Query: 314 GWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
GWG + +L + ++S Q C + + + CAG
Sbjct: 119 GWGTTTSPDVTFPSDLMCVDVKLISPQDCT----KVYKDLLENSMLCAGI 164
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus}
SCOP: b.47.1.2
Length = 224
Score = 117 bits (296), Expect = 2e-31
Identities = 51/223 (22%), Positives = 84/223 (37%), Gaps = 42/223 (18%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G ++ P+ L L +CGG L+S +V+TAAHC + +
Sbjct: 4 GVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCK----------GREITV 53
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
LG + E Q +V++ I+ ++NS L DI LL+L V+ + V V L
Sbjct: 54 ILGAHDV--RKRESTQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPL- 110
Query: 143 DDSTAPLQLSAVEGTSVCN----GDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKH 198
P + ++C G +G ++ LR V + + + + C
Sbjct: 111 -----PSPSDFIHPGAMCWAAGWGKTGVRDPT----SYTLRE-VELRIMDE--KACVDYR 158
Query: 199 YVVFTD---------VANVCNGDSGGGMVFKIDSAWYLRGIVS 232
Y + + GDSGG ++ GIVS
Sbjct: 159 YYEYKFQVCVGSPTTLRAAFMGDSGGPLLCA----GVAHGIVS 197
Score = 75.6 bits (187), Expect = 3e-16
Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 17/115 (14%)
Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGT- 311
V++ I+ ++NS L DI LL+L V+ + V V L P + G
Sbjct: 71 KVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPL------PSPSDFI--HPGAM 122
Query: 312 --VIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
GWG D S L+ + I+ + C + + C G
Sbjct: 123 CWAAGWGKTGVRDPTSYTLREVELRIMDEKAC-----VDYRYYEYKFQVCVGSPT 172
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus
scrofa} SCOP: b.47.1.2
Length = 241
Score = 118 bits (297), Expect = 2e-31
Identities = 51/215 (23%), Positives = 83/215 (38%), Gaps = 64/215 (29%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G+ WPW V+L + CGG+LV ++V+TAAHC+ S T +
Sbjct: 4 GEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCI--------SSSRTYRV 55
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS--NYLGDIALLQLSSDVDYSMYVRPVC 140
LG++ ++E G +V ++ ++ +NS+ + DIALL+L+S V + ++ C
Sbjct: 56 VLGRHSLS--TNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGC 113
Query: 141 ---------------------LWDDSTAPLQLSAVE------------------------ 155
L + +P L +
Sbjct: 114 LPAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTVKTNMI 173
Query: 156 ------GTSVCNGDSGGGMV-FKIDSAWYLRGIVS 183
S CNGDSGG + + W + GIVS
Sbjct: 174 CAGGDGIISSCNGDSGGPLNCQGANGQWQVHGIVS 208
Score = 75.7 bits (187), Expect = 5e-16
Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 10/120 (8%)
Query: 245 TKHYVVFTDVKRVHIYPTFNSS--NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQL 302
+ + V ++ ++ +NS+ + DIALL+L+S V + ++ CL
Sbjct: 65 NEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCL-----PAAGT 119
Query: 303 SAVEGRDGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
V GWG N + L+ + +V + C S P ++ CAG
Sbjct: 120 ILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATC--SKPGWWGSTVKTNMICAGG 177
Score = 36.4 bits (85), Expect = 0.007
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 209 CNGDSGGGMV-FKIDSAWYLRGIVS 232
CNGDSGG + + W + GIVS
Sbjct: 184 CNGDSGGPLNCQGANGQWQVHGIVS 208
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine
esterase, glycosylation, extracellular; HET: NAG; 1.75A
{Agkistrodon halys}
Length = 238
Score = 117 bits (296), Expect = 3e-31
Identities = 52/238 (21%), Positives = 77/238 (32%), Gaps = 70/238 (29%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G + + + VALY + L CGG+L++ +V+TAAHC K I
Sbjct: 4 GDECNINEHRFLVALYTSRSRTL--FCGGTLINQEWVLTAAHCDRKN----------FRI 51
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
LG H + +E ++ + N + + DI L++L S V S ++ P L
Sbjct: 52 KLGM-HSKKVPNEDEQTRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKHIAPFSLP 110
Query: 142 --------------W-----DDSTAPLQLSAVE----GTSVCNGDSGGGMVFKIDS---- 174
W + T P V +C S
Sbjct: 111 SSPPSVGSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCR-APYPEFELPATSRTLC 169
Query: 175 AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
A L G DT C GDSGG ++ +GI S
Sbjct: 170 AGILEGGK------------DT------------CKGDSGGPLICN----GQFQGIAS 199
Score = 79.9 bits (198), Expect = 1e-17
Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 10/115 (8%)
Query: 249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGR 308
++ + N + + DI L++L S V S ++ P L + G
Sbjct: 66 QTRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKHIAPFSLPSSPPSV-------GS 118
Query: 309 DGTVIGWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
++GWG + + ++ ++ C P+F TS T CAG
Sbjct: 119 VCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEFELPATSR-TLCAGI 172
>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B*
1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B
1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...
Length = 131
Score = 113 bits (286), Expect = 4e-31
Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 14/119 (11%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G++ G WPW V+L G + CGGSL++ N+V+TAAHC V+
Sbjct: 4 GEEAVPGSWPWQVSLQDKTG---FHFCGGSLINENWVVTAAHCGVTTSD---------VV 51
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL 141
G++ Q S +Q ++ +V +NS DI LL+LS+ +S V VCL
Sbjct: 52 VAGEFDQG--SSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCL 108
Score = 60.3 bits (147), Expect = 2e-11
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEG 307
+ + +V +NS DI LL+LS+ +S V VCL G
Sbjct: 64 KIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCL-----PSASDDFAAG 118
Query: 308 RDGTVIGWGY 317
GWG
Sbjct: 119 TTCVTTGWGL 128
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET:
NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB:
2aip_A*
Length = 231
Score = 116 bits (293), Expect = 5e-31
Identities = 43/234 (18%), Positives = 79/234 (33%), Gaps = 74/234 (31%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G + + + +Y +CGG+L++ +V+TA HC + I
Sbjct: 4 GDECNINEHRFLALVYAN-----GSLCGGTLINQEWVLTARHCDRGN----------MRI 48
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
YLG H + ++ ++ ++ T N + + DI L++L+ V S ++ P+ L
Sbjct: 49 YLGM-HNLKVLNKDALRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLP 107
Query: 142 --------------W-----DDSTAPLQLSAVE--------------------------- 155
W ++T P
Sbjct: 108 SNPPSVGSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAYKGLAATTLCAGILE 167
Query: 156 -GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VVFTDVAN 207
G C GDSGG ++ +GI+S+ G C ++T V +
Sbjct: 168 GGKDTCKGDSGGPLICN----GQFQGILSV-----GGNPCAQPRKPGIYTKVFD 212
Score = 74.9 bits (185), Expect = 7e-16
Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 14/119 (11%)
Query: 245 TKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSA 304
K + ++ T N + + DI L++L+ V S ++ P+ L + +
Sbjct: 59 NKDALRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLPSNPPSV----- 113
Query: 305 VEGRDGTVIGWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
G ++GWG N + + A + I+ + C + + T CAG
Sbjct: 114 --GSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAYKGL-----AATTLCAGI 165
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 118 bits (298), Expect = 8e-31
Identities = 51/235 (21%), Positives = 83/235 (35%), Gaps = 46/235 (19%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G +PW V GG+L++ +V+TAAH V + +
Sbjct: 86 GSDADIKNFPWQVFFDN-------PWAGGALINEYWVLTAAHVV--------EGNREPTM 130
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFN-------SSNYLGDIALLQLSSDVDYSMY 135
Y+G S + + V I+P + +N+ DIAL++L V
Sbjct: 131 YVGSTSVQT-SRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPT 189
Query: 136 VRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRG----IVSITVARDGL 191
V P+CL S+ + G + SG G K D A L+ + + ++
Sbjct: 190 VSPICLPGTSSDYNLMDGDLGL-I----SGWGRTEKRDRAVRLKAARLPVAPLRKCKEVK 244
Query: 192 RVCDTKHYVVFTDVANV-----------CNGDSGGGMVFKIDSA---WYLRGIVS 232
T + N+ C GDSGG + + +Y G+VS
Sbjct: 245 VEKPTADAEAYVFTPNMICAGGEKGMDSCKGDSGGAFAVQDPNDKTKFYAAGLVS 299
Score = 87.9 bits (218), Expect = 9e-20
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 15/121 (12%)
Query: 254 VKRVHIYPTFN-------SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVE 306
+ V I+P + +N+ DIAL++L V V P+CL S+ + ++
Sbjct: 150 PEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSS---DYNLMD 206
Query: 307 GRDGTVIGWGYDENDRVSEELKMAIMPIVSHQQC-----LWSNPQFFSQFTSDETFCAGF 361
G G + GWG E + LK A +P+ ++C + + CAG
Sbjct: 207 GDLGLISGWGRTEKRDRAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGG 266
Query: 362 R 362
Sbjct: 267 E 267
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 122 bits (308), Expect = 8e-31
Identities = 43/252 (17%), Positives = 84/252 (33%), Gaps = 58/252 (23%)
Query: 22 YGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLV 81
+ + T + PW + C G++VS +V+TAAHC T ++
Sbjct: 459 HRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDD-----KEHSIK 513
Query: 82 IYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS---------NYLGDIALLQLSSDVDY 132
+ +G ++ +++ V +P +N + Y D+AL++L + + Y
Sbjct: 514 VSVGGEK----------RDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKY 563
Query: 133 SMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVS--------- 183
+RP+CL L T+ ++ D
Sbjct: 564 GQTIRPICLPCTEGTTRALRLPPTTTC--QQQKEELLPAQDIKALFVSEEEKKLTRKEVY 621
Query: 184 -ITVARDGLRVCDTKHYVVFTDVANV----------------------CNGDSGGGMVFK 220
+ G D ++ + V ++ C GDSGG ++
Sbjct: 622 IKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVH 681
Query: 221 IDSAWYLRGIVS 232
S + G++S
Sbjct: 682 KRSRFIQVGVIS 693
Score = 65.5 bits (159), Expect = 9e-12
Identities = 19/137 (13%), Positives = 41/137 (29%), Gaps = 28/137 (20%)
Query: 253 DVKRVHIYPTFNSS---------NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLS 303
+++ V +P +N + Y D+AL++L + + Y +RP+CL L
Sbjct: 524 EIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALR 583
Query: 304 AVEGRDGTVIGWGYDEND--------RVSEELKMAIMPIVSHQQC-----------LWSN 344
++L + I + + +
Sbjct: 584 LPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDK 643
Query: 345 PQFFSQFTSDETFCAGF 361
+ S+ + C G
Sbjct: 644 VKDISEVVTPRFLCTGG 660
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG;
0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A
1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A*
1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E
1pqa_A*
Length = 224
Score = 115 bits (290), Expect = 1e-30
Identities = 54/239 (22%), Positives = 85/239 (35%), Gaps = 75/239 (31%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G + G +P+ V++ R N CGGSL++ N V+TAAHCV+ I
Sbjct: 4 GTSASAGDFPFIVSISR----NGGPWCGGSLLNANTVLTAAHCVSG------YAQSGFQI 53
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
G + G + V ++P+++ +N D+A+L+LS+ + + L
Sbjct: 54 RAGSLSR-----TSGGITSSLSSVRVHPSYSGNNN--DLAILKLSTSIPSGGNIGYARLA 106
Query: 142 ----------------W-----DDSTAPLQLSAVE----GTSVCNGDSGGGMVFKIDS-- 174
W S+ P+ L V + C G + +
Sbjct: 107 ASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAIT--NQMF 164
Query: 175 -AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
A G D+ C GDSGG +V DS+ L G VS
Sbjct: 165 CAGVSSGGK------------DS------------CQGDSGGPIV---DSSNTLIGAVS 196
Score = 76.0 bits (188), Expect = 3e-16
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRD 309
+ + + V ++P+++ +N D+A+L+LS+ + + L + P V G
Sbjct: 65 ITSSLSSVRVHPSYSGNNN--DLAILKLSTSIPSGGNIGYARLAASGSDP-----VAGSS 117
Query: 310 GTVIGWGY-DENDRVSEE-LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
TV GWG E + L +PIVS C Q+ + +++ FCAG +
Sbjct: 118 ATVAGWGATSEGGSSTPVNLLKVTVPIVSRATC---RAQYGTSAITNQMFCAGVSS 170
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A*
4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A*
2hvx_A* 3s0n_A* 2rdl_A
Length = 226
Score = 115 bits (290), Expect = 1e-30
Identities = 41/210 (19%), Positives = 65/210 (30%), Gaps = 65/210 (30%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G + P+ L S CGG L+ N+V+TAAHC ++ +
Sbjct: 4 GTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCA----------GRSITV 53
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
LG ++ +E Q +V + +P +N+S DI LL+L ++ V +
Sbjct: 54 TLGAHNI--TEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFP 111
Query: 142 --------------------WDDSTAPLQLSAVE-------------------------- 155
L V+
Sbjct: 112 SQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQLCVGNP 171
Query: 156 --GTSVCNGDSGGGMVFKIDSAWYLRGIVS 183
S GDSGG ++ +GIVS
Sbjct: 172 RKTKSAFKGDSGGPLLCA----GVAQGIVS 197
Score = 74.9 bits (185), Expect = 7e-16
Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 17/115 (14%)
Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGT- 311
+V + +P +N+S DI LL+L ++ V + P Q + V G
Sbjct: 71 EVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPF------PSQFNFV--PPGRM 122
Query: 312 --VIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
V GWG S+ L+ + ++ Q C F F + C G
Sbjct: 123 CRVAGWGRTGVLKPGSDTLQEVKLRLMDPQAC-----SHFRDFDHNLQLCVGNPR 172
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus
musculus} SCOP: b.47.1.2
Length = 225
Score = 115 bits (290), Expect = 1e-30
Identities = 55/237 (23%), Positives = 80/237 (33%), Gaps = 77/237 (32%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G++ PW AL++ E +CGG LV +V+TAAHC +K +
Sbjct: 4 GRECIPHSQPWQAALFQGER----LICGGVLVGDRWVLTAAHCKKQK----------YSV 49
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLG---DIALLQLSSDVDYSMYVRPV 139
LG + + Q QV + +P +N+SN DI L++L + + V+PV
Sbjct: 50 RLGDHSLQS--RDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPV 107
Query: 140 CL---------------W-----DDSTAPLQLSAVE------------------------ 155
L W P L+ E
Sbjct: 108 QLANLCPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYPGKITEGMVCA 167
Query: 156 ----GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VVFTDVAN 207
G C GDSGG +V L+GI S G C V+T +
Sbjct: 168 GSSNGADTCQGDSGGPLVCD----GMLQGITSW-----GSDPCGKPEKPGVYTKICR 215
Score = 70.6 bits (174), Expect = 2e-14
Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 16/115 (13%)
Query: 253 DVKRVHIYPTFNSSNYLG---DIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRD 309
V + +P +N+SN DI L++L + + V+PV L + G+
Sbjct: 67 QVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLANLCPKV-------GQK 119
Query: 310 GTVIGWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
+ GWG + L A + I S +C + P + T CAG
Sbjct: 120 CIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYP---GKITEG-MVCAGSS 170
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease,
zymogen; 2.50A {Mus musculus} PDB: 3g01_A
Length = 227
Score = 114 bits (288), Expect = 2e-30
Identities = 43/212 (20%), Positives = 66/212 (31%), Gaps = 67/212 (31%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G + + P+ + CGG LV +V+TAAHC ++ +
Sbjct: 4 GNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHCK----------GRSMTV 53
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
LG ++ + E Q V + +P +N + DI LL+L + + VRP+ L
Sbjct: 54 TLGAHNI--KAKEETQQIIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLP 111
Query: 142 --------------------WDDSTAPLQLSAVE-------------------------- 155
D P L V+
Sbjct: 112 RRNAHVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQFQSSYNRANEICVG 171
Query: 156 ----GTSVCNGDSGGGMVFKIDSAWYLRGIVS 183
+ DSGG +V K GIVS
Sbjct: 172 DSKIKGASFEEDSGGPLVCK----RAAAGIVS 199
Score = 79.5 bits (197), Expect = 1e-17
Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 15/115 (13%)
Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGT- 311
V + +P +N + DI LL+L + + VRP+ L P + + V + G
Sbjct: 71 PVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNL------PRRNAHV--KPGDE 122
Query: 312 --VIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
V GWG + + L + + Q C QF S + C G
Sbjct: 123 CYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVC---ESQFQSSYNRANEICVGDSK 174
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Length = 234
Score = 114 bits (288), Expect = 3e-30
Identities = 52/239 (21%), Positives = 84/239 (35%), Gaps = 72/239 (30%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G + P+ V L ++ +C G+L++ ++V+TAAHC K +
Sbjct: 4 GNEVTPHSRPYMVLLS----LDRKTICAGALIAKDWVLTAAHCNLNKRS---------QV 50
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
LG + + +E Q VK+ YP ++ + GD+ LLQL+ + YV + L
Sbjct: 51 ILGAHSITR--EEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLP 108
Query: 142 --------------------WDDSTAPLQLSAVE----GTSVCNGDSGGGMVFKIDS--- 174
+ ++ L VE VCN + I
Sbjct: 109 KKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMV 168
Query: 175 -AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
A LRG D+ CNGDSG ++ + RG+ S
Sbjct: 169 CAGSLRGGR------------DS------------CNGDSGSPLLCE----GVFRGVTS 199
Score = 76.8 bits (190), Expect = 2e-16
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 12/115 (10%)
Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGT- 311
VK+ YP ++ + GD+ LLQL+ + YV + L P + V + GT
Sbjct: 68 LVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHL------PKKGDDV--KPGTM 119
Query: 312 --VIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
V GWG + S+ L+ + I+ + C N F+ CAG
Sbjct: 120 CQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLR 174
>1cgh_A Cathepsin G; inflammation, specificity, serine protease,
hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A*
1kyn_A*
Length = 224
Score = 114 bits (287), Expect = 4e-30
Identities = 55/220 (25%), Positives = 78/220 (35%), Gaps = 37/220 (16%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G+++ P+ L CGG LV ++V+TAAHC + +
Sbjct: 4 GRESRPHSRPYMAYLQIQSPAG-QSRCGGFLVREDFVLTAAHCW----------GSNINV 52
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
LG ++ E Q+ +R +P +N DI LLQLS V + V PV L
Sbjct: 53 TLGAHNI--QRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVAL- 109
Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
P + ++C +G G V LR V + V RD R C
Sbjct: 110 -----PRAQEGLRPGTLCTV-AGWGRVSMRRGTDTLRE-VQLRVQRD--RQCLRIFGSYD 160
Query: 203 TD----------VANVCNGDSGGGMVFKIDSAWYLRGIVS 232
GDSGG ++ GIVS
Sbjct: 161 PRRQICVGDRRERKAAFKGDSGGPLLCN----NVAHGIVS 196
Score = 78.3 bits (194), Expect = 5e-17
Identities = 30/114 (26%), Positives = 42/114 (36%), Gaps = 15/114 (13%)
Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGT- 311
+R +P +N DI LLQLS V + V PV L R GT
Sbjct: 70 TARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGL--------RPGTL 121
Query: 312 --VIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
V GWG R ++ L+ + + +QC + F + C G R
Sbjct: 122 CTVAGWGRVSMRRGTDTLREVQLRVQRDRQC----LRIFGSYDPRRQICVGDRR 171
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes,
fibrinogen binding, glycosylati hydrolase; 1.43A
{Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A*
Length = 234
Score = 113 bits (286), Expect = 6e-30
Identities = 48/237 (20%), Positives = 72/237 (30%), Gaps = 77/237 (32%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G + + VA + + G + C G+L++ +V+TAAHC +
Sbjct: 4 GDECNINEHRSLVAFFNSTG----FFCSGTLINEEWVLTAAHCDNTN----------FQM 49
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPT-FNSSNYLGDIALLQLSSDVDYSMYVRPVCL 141
LG + + Q + K I P N DI L++L S V S ++ P+ L
Sbjct: 50 KLGVHSK--KVLNEDEQTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVPLSL 107
Query: 142 ---------------W-----DDSTAPLQLSAVE-------------------------- 155
W T P
Sbjct: 108 PSSPPSVGSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGYPELLTEYRTLCAG 167
Query: 156 ----GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VVFTDVAN 207
G C GDSGG ++ +GIVS G C V+T V +
Sbjct: 168 ILEGGKDTCGGDSGGPLICN----GQFQGIVSF-----GAHPCGQGLKPGVYTKVFD 215
Score = 72.2 bits (178), Expect = 8e-15
Identities = 24/115 (20%), Positives = 38/115 (33%), Gaps = 13/115 (11%)
Query: 250 VFTDVKRVHIYPT-FNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGR 308
+ K I P N DI L++L S V S ++ P+ L + G
Sbjct: 64 QTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVPLSLPSSPPSV-------GS 116
Query: 309 DGTVIGWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
++GWG + A + ++ C + T T CAG
Sbjct: 117 VCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVC---QAGYPELLTEYRTLCAGI 168
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS;
1.70A {Solenopsis invicta} SCOP: b.47.1.2
Length = 222
Score = 113 bits (284), Expect = 8e-30
Identities = 50/224 (22%), Positives = 88/224 (39%), Gaps = 48/224 (21%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G+ G++P+ V+L R G S+ CG S++ N V+TAAHCV D + + L +
Sbjct: 4 GKDAPVGKYPYQVSL-RLSG---SHRCGASILDNNNVLTAAHCV-----DGLSNLNRLKV 54
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
++G + V+ + ++ D+AL+ L++ + ++ V+P+ L
Sbjct: 55 HVGTNYL-----SESGDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKL- 108
Query: 143 DDSTAPLQLSAVEGTSVC-----NGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK 197
+E + GG ++ L+ I I + C+
Sbjct: 109 -----STNDEDLESNPCTLTGWGSTRLGG------NTPNALQEIELIVHPQK---QCERD 154
Query: 198 HYVVFTD---------VANVCNGDSGGGMVFKIDSAWYLRGIVS 232
+ V D C+GDSGG +V GIVS
Sbjct: 155 QWRV-IDSHICTLTKRGEGACHGDSGGPLVAN----GAQIGIVS 193
Score = 77.2 bits (191), Expect = 9e-17
Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 254 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVI 313
V+ + ++ D+AL+ L++ + ++ V+P+ L +E T+
Sbjct: 70 VEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKL------STNDEDLESNPCTLT 123
Query: 314 GWGY-DENDRVSEELKMAIMPIVSHQQC 340
GWG L+ + + +QC
Sbjct: 124 GWGSTRLGGNTPNALQEIELIVHPQKQC 151
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 119 bits (299), Expect = 8e-30
Identities = 52/263 (19%), Positives = 88/263 (33%), Gaps = 70/263 (26%)
Query: 2 CYRDVSCGT-VVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVI 60
+SCG + + + G++ G PW VA+ G CGG + +++
Sbjct: 303 LLPKLSCGVKNRMHIRRKRIVGGKRAQLGDLPWQVAIKDASG----ITCGGIYIGGCWIL 358
Query: 61 TAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGD 120
TAAHC+ + I+ D + + V R+ + +N+ Y D
Sbjct: 359 TAAHCLRASKTHR------YQIWTTVVDWIH-PDLKRIVIEYVDRIIFHENYNAGTYQND 411
Query: 121 IALLQLSSDVDYSM----YVRPVCL-----------------W-----DDSTAPLQLSAV 154
IAL+++ D + P C+ W ++ LQ V
Sbjct: 412 IALIEMKKDGNKKDCELPRSIPACVPWSPYLFQPNDTCIVSGWGREKDNERVFSLQWGEV 471
Query: 155 EGTSVCNGDSGGGMVFKIDS----AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCN 210
+ S C+ G + A G + D C
Sbjct: 472 KLISNCSKFYGNRF---YEKEMECAGTYDGSI------------DA------------CK 504
Query: 211 GDSGGGMV-FKIDSAWYLRGIVS 232
GDSGG +V ++ Y+ G+VS
Sbjct: 505 GDSGGPLVCMDANNVTYVWGVVS 527
Score = 78.4 bits (193), Expect = 5e-16
Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 17/136 (12%)
Query: 232 SITVARDGLRVCDTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSM----YV 287
I D K V+ V R+ + +N+ Y DIAL+++ D +
Sbjct: 373 QIWTTVVDWIHPDLKRIVIEY-VDRIIFHENYNAGTYQNDIALIEMKKDGNKKDCELPRS 431
Query: 288 RPVCL-WDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQ 346
P C+ W V GWG ++++ L+ + ++S+ + N
Sbjct: 432 IPACVPWSPYLFQ------PNDTCIVSGWGREKDNERVFSLQWGEVKLISNCSKFYGN-- 483
Query: 347 FFSQFTSDETFCAGFR 362
+F E CAG
Sbjct: 484 ---RFYEKEMECAGTY 496
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase -
serine proteinase (GAM inactive serine proteinase
(alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP:
b.47.1.2
Length = 240
Score = 113 bits (285), Expect = 9e-30
Identities = 60/246 (24%), Positives = 83/246 (33%), Gaps = 86/246 (34%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
Q PWHVA+YR Y CGG L+ N+V+TAAHC K +
Sbjct: 7 SQVDCENSQPWHVAVYRFNK----YQCGGVLLDRNWVLTAAHCYNDK----------YQV 52
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVD 131
+LGK + DE Q++ V + +P FN S +Y D+ LL+LS D
Sbjct: 53 WLGKN--NFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPAD 110
Query: 132 YSMYVRPVCL---------------W-----DDSTAPLQLSAVE---------------- 155
+ V+P+ L W P L V
Sbjct: 111 ITDVVKPITLPTEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMK 170
Query: 156 -------------GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VV 201
G+ C DSGG ++ L+GI S G C V
Sbjct: 171 VTDAMLCAGEMDGGSYTCEHDSGGPLICD----GILQGITSW-----GPEPCGEPTEPSV 221
Query: 202 FTDVAN 207
+T +
Sbjct: 222 YTKLIK 227
Score = 66.9 bits (164), Expect = 6e-13
Identities = 25/122 (20%), Positives = 45/122 (36%), Gaps = 24/122 (19%)
Query: 253 DVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQ 301
V + +P FN S +Y D+ LL+LS D + V+P+ L +
Sbjct: 70 LVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKL-- 127
Query: 302 LSAVEGRDGTVIGWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCA 359
G GWG + ++L+ + ++ ++ C + + T CA
Sbjct: 128 -----GSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDC---DKAHEMKVTDA-MLCA 178
Query: 360 GF 361
G
Sbjct: 179 GE 180
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG;
2.40A {Bos taurus} SCOP: b.47.1.2
Length = 227
Score = 112 bits (284), Expect = 1e-29
Identities = 44/211 (20%), Positives = 72/211 (34%), Gaps = 67/211 (31%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G + P+ L S++CGG LV ++V+TAAHC+ ++ +
Sbjct: 4 GHEAKPHSRPYMAFLLFKTS-GKSHICGGFLVREDFVLTAAHCL----------GSSINV 52
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
LG ++ E Q V+R +P +N DI LL+L+ D + V P+ L
Sbjct: 53 TLGAHNI--MERERTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLP 110
Query: 142 --------------------WDDSTAPLQLSAVE-------------------------- 155
+ + +L V+
Sbjct: 111 RSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFKNYIPFTQICAGD 170
Query: 156 ---GTSVCNGDSGGGMVFKIDSAWYLRGIVS 183
+ +GDSGG +V +GIVS
Sbjct: 171 PSKRKNSFSGDSGGPLVCN----GVAQGIVS 197
Score = 74.8 bits (185), Expect = 7e-16
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGT- 311
V+R +P +N DI LL+L+ D + V P+ L P L+ V + G
Sbjct: 70 PVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINL------PRSLAEV--KPGMM 121
Query: 312 --VIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
V GWG N +++L+ + + S ++C +F + + CAG
Sbjct: 122 CSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKC---IARFKNYIPFTQ-ICAGD 170
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen;
HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A
3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A
Length = 224
Score = 111 bits (281), Expect = 3e-29
Identities = 52/238 (21%), Positives = 77/238 (32%), Gaps = 76/238 (31%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G + A+G++P+ V L S CGG+L + + V+TAAHCV ++ ++
Sbjct: 4 GTRAAQGEFPFMVRL--------SMGCGGALYAQDIVLTAAHCV-----SGSGNNTSITA 50
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
G + +V P F Y D AL++L+ + +P
Sbjct: 51 TGGVVDLQ----SSSAVKVRSTKVLQAPGFTKETYGKDWALIKLAQPI-----NQPTLKI 101
Query: 143 DDSTAP----------------------LQLSAVE--GTSVCNGDSGGGMVFKIDS---A 175
+TA L + V + C S +V + A
Sbjct: 102 ATTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSSSFILVA--NEMICA 159
Query: 176 WYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKI-DSAWYLRGIVS 232
Y DT C GDSGG M K W GIVS
Sbjct: 160 GYDTKQE------------DT------------CQGDSGGPMFRKDNADEWVQVGIVS 193
Score = 77.6 bits (192), Expect = 7e-17
Identities = 28/115 (24%), Positives = 40/115 (34%), Gaps = 15/115 (13%)
Query: 250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRD 309
V +V P F Y D AL++L+ + +P +TA
Sbjct: 63 VKVRSTKVLQAPGFTKETYGKDWALIKLAQPI-----NQPTLKIATTTAY------NQGT 111
Query: 310 GTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
TV GWG E L A +P VS C + F ++ CAG+
Sbjct: 112 FTVAGWGANREGGSQQRYLLKANVPFVSDAAC--RSSSSFILVANEM-ICAGYDT 163
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP:
b.47.1.2
Length = 235
Score = 111 bits (281), Expect = 3e-29
Identities = 49/246 (19%), Positives = 78/246 (31%), Gaps = 88/246 (35%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G K + PW VA+ Y+CGG L+ ++VITAAHC + +
Sbjct: 4 GYKCEKNSQPWQVAVIN------EYLCGGVLIDPSWVITAAHCYSNN----------YQV 47
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVD 131
LG+ + + DE Q + V++ +P + ++ D+ LL LS D
Sbjct: 48 LLGRNNLFK--DEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPAD 105
Query: 132 YSMYVRPVCL---------------W-----DDSTAPLQLSAVE---------------- 155
+ V+ + L W + L V
Sbjct: 106 ITGGVKVIDLPTKEPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETYKDN 165
Query: 156 -------------GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VV 201
G C GDSGG ++ L+GI S G C +
Sbjct: 166 VTDVMLCAGEMEGGKDTCAGDSGGPLICD----GVLQGITSG-----GATPCAKPKTPAI 216
Query: 202 FTDVAN 207
+ +
Sbjct: 217 YAKLIK 222
Score = 64.5 bits (158), Expect = 3e-12
Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 24/123 (19%)
Query: 253 DVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQ 301
V++ +P + ++ D+ LL LS D + V+ + L
Sbjct: 65 LVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKEPKV-- 122
Query: 302 LSAVEGRDGTVIGWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCA 359
G GWG VS +L+ + ++S+++C+ + + +D CA
Sbjct: 123 -----GSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCI----ETYKDNVTDVMLCA 173
Query: 360 GFR 362
G
Sbjct: 174 GEM 176
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes
scabiei type hominis}
Length = 228
Score = 111 bits (280), Expect = 4e-29
Identities = 43/211 (20%), Positives = 70/211 (33%), Gaps = 65/211 (30%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G+KT Q PW VA+ RT S CGG+++S +V+TAAHCV + +T+VI
Sbjct: 3 GEKTDIKQVPWTVAV-RTYPGEESLTCGGAILSQWFVLTAAHCVFDQ------KPETIVI 55
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMY-VRPVCL 141
++ G ++ + DIA+L+LS + +P L
Sbjct: 56 QYE---STNLWEDPG-KSDPYVSHVYLSFYRQETMENDIAILELSRPLKLDGLKSKPAKL 111
Query: 142 ---------------------WDDSTAPLQLSAVE------------------------- 155
L + +
Sbjct: 112 PDIEFRPKTGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTKYGPIFLSLQVFCA 171
Query: 156 ---GTSVCNGDSGGGMVFKIDSAWYLRGIVS 183
G S+ +GD+G V + L G+ +
Sbjct: 172 QKVGVSLESGDAGDPTVQQ----DTLVGVAA 198
Score = 75.7 bits (187), Expect = 3e-16
Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 10/113 (8%)
Query: 250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMY-VRPVCLWDDSTAPLQLSAVEGR 308
+ DIA+L+LS + +P L D P G
Sbjct: 68 KSDPYVSHVYLSFYRQETMENDIAILELSRPLKLDGLKSKPAKLPDIEFRP-----KTGS 122
Query: 309 DGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAG 360
D V G+G D +LK A + +V +C ++ F S + FCA
Sbjct: 123 DVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDEC---RTKYGPIFLSLQVFCAQ 172
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 111 bits (280), Expect = 5e-29
Identities = 50/234 (21%), Positives = 76/234 (32%), Gaps = 71/234 (30%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G + + P+ VALY + + C G+L++ +V+TAAHC D + I
Sbjct: 4 GDECNINEHPFLVALYT--SASSTIHCAGALINREWVLTAAHC----------DRRNIRI 51
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
LG H +E + T + DI L++L V YS ++ PV L
Sbjct: 52 KLGM-HSKNIRNEDEQIRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTHIAPVSLP 110
Query: 142 --------------W---DDSTAPLQLSAVE----------------------------- 155
W +T P
Sbjct: 111 SRSRGVGSRCRIMGWGKISTTTYPDVPHCTNIFIVKHKWCEPLYPWVPADSRTLCAGILK 170
Query: 156 -GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VVFTDVAN 207
G C+GDSGG ++ + GIV+ G C V+T V +
Sbjct: 171 GGRDTCHGDSGGPLICN----GEMHGIVAG-----GSEPCGQHLKPAVYTKVFD 215
Score = 76.1 bits (188), Expect = 3e-16
Identities = 25/112 (22%), Positives = 38/112 (33%), Gaps = 10/112 (8%)
Query: 250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRD 309
+ + T + DI L++L V YS ++ PV L S G
Sbjct: 67 IRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTHIAPVSLPSRSRGV-------GSR 119
Query: 310 GTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
++GWG + + IV H+ C P + T CAG
Sbjct: 120 CRIMGWGKISTTTYPDVPHCTNIFIVKHKWC---EPLYPWVPADSRTLCAGI 168
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC
MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB:
1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A
Length = 227
Score = 111 bits (279), Expect = 5e-29
Identities = 44/212 (20%), Positives = 67/212 (31%), Gaps = 68/212 (32%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G + P+ L + CGG L+ ++V+TAAHC ++ +
Sbjct: 4 GHEAKPHSRPYMAYLMIWDQ-KSLKRCGGFLIRDDFVLTAAHCW----------GSSINV 52
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
LG ++ + E Q VKR +P +N N+ DI LLQL + V+P+ L
Sbjct: 53 TLGAHNIKE--QEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLP 110
Query: 142 --------------------WDDSTAPLQLSAVE-------------------------- 155
L V+
Sbjct: 111 SNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTIELCVG 170
Query: 156 ----GTSVCNGDSGGGMVFKIDSAWYLRGIVS 183
+ GDSGG +V +GIVS
Sbjct: 171 DPEIKKTSFKGDSGGPLVCN----KVAQGIVS 198
Score = 80.6 bits (200), Expect = 7e-18
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 11/113 (9%)
Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVE-GRDGT 311
VKR +P +N N+ DI LLQL + V+P+ L P + V+ G+ +
Sbjct: 70 PVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRL------PSNKAQVKPGQTCS 123
Query: 312 VIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
V GWG + S L+ M + ++C + S C G
Sbjct: 124 VAGWGQTAPLGKHSHTLQEVKMTVQEDRKC---ESDLRHYYDSTIELCVGDPE 173
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase,
secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A
2zgj_A
Length = 240
Score = 111 bits (280), Expect = 5e-29
Identities = 52/239 (21%), Positives = 78/239 (32%), Gaps = 77/239 (32%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G++ P+ +L R N S++CGG LV +V+TAAHC+ ++ L +
Sbjct: 4 GREVIPHSRPYMASLQR----NGSHLCGGVLVHPKWVLTAAHCLAQRM-------AQLRL 52
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLG-DIALLQLSSDVDYSMYVRPVCL 141
LG + + +K +P + L D+ALLQL V S +RP+ L
Sbjct: 53 VLGLHTL-----DSPGLTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPLAL 107
Query: 142 ---------------------WDDSTAPLQLSAVE------------------------- 155
L ++
Sbjct: 108 PSKRQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLSPSMVC 167
Query: 156 ------GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VVFTDVAN 207
+ C GDSGG +V L G++S RVC V T VA
Sbjct: 168 LAADSKDQAPCKGDSGGPLVCG--KGRVLAGVLSF-----SSRVCTDIFKPPVATAVAP 219
Score = 73.8 bits (182), Expect = 2e-15
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 15/114 (13%)
Query: 253 DVKRVHIYPTFNSSNYLG-DIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGT 311
+K +P + L D+ALLQL V S +RP+ L GT
Sbjct: 67 HIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPLALPSKRQVV--------AAGT 118
Query: 312 ---VIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
+ GWG + R+S L+ + ++ + C +N +F++ S C
Sbjct: 119 RCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMC--NNSRFWNGSLSPSMVCLAA 170
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET:
NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Length = 237
Score = 110 bits (278), Expect = 1e-28
Identities = 58/233 (24%), Positives = 89/233 (38%), Gaps = 55/233 (23%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G + PW VA+Y ++CGG L+ N+V+TAAHC D +
Sbjct: 4 GFNCEKNSQPWQVAVYY----QKEHICGGVLLDRNWVLTAAHCY----------VDQYEV 49
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVD 131
+LGK F +E Q++ V + +P FN S ++ D+ LL+LS D
Sbjct: 50 WLGKNKL--FQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPAD 107
Query: 132 YSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMV--FKIDSAWYLRGIVSITVARD 189
+ V+P+ L P SG G + + L+ V IT+ +
Sbjct: 108 ITDVVKPIALPTKEPKPGSKCLA---------SGWGSITPTRWQKPDDLQC-VFITLLPN 157
Query: 190 GLRVCDTKHYVVFTDV----------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
C + TDV + C DSGG ++ L+G S
Sbjct: 158 --ENCAKVYLQKVTDVMLCAGEMGGGKDTCRDDSGGPLICD----GILQGTTS 204
Score = 63.8 bits (156), Expect = 6e-12
Identities = 25/122 (20%), Positives = 45/122 (36%), Gaps = 24/122 (19%)
Query: 253 DVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQ 301
V + +P FN S ++ D+ LL+LS D + V+P+ L P
Sbjct: 67 LVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKEPKP-- 124
Query: 302 LSAVEGRDGTVIGWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCA 359
G GWG + ++L+ + ++ ++ C + + T CA
Sbjct: 125 -----GSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENC---AKVYLQKVTDV-MLCA 175
Query: 360 GF 361
G
Sbjct: 176 GE 177
>2zch_P Prostate-specific antigen; human PSA, kallikrein related
peptidases, antibodies, prostate cancer, glycoprotein,
hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens}
PDB: 2zck_P* 2zcl_P* 3qum_P*
Length = 237
Score = 109 bits (276), Expect = 1e-28
Identities = 56/246 (22%), Positives = 84/246 (34%), Gaps = 86/246 (34%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G + + PW V + VCGG LV +V+TAAHC+ K VI
Sbjct: 4 GWECEKHSQPWQVLVAS----RGRAVCGGVLVHPQWVLTAAHCIRNK----------SVI 49
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVD 131
LG++ F E Q QV +P ++ S + D+ LL+LS +
Sbjct: 50 LLGRH--SLFHPEDTGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAE 107
Query: 132 YSMYVRPVCL---------------W-----DDSTAPLQLSAVE---------------- 155
+ V+ + L W ++ P +L V+
Sbjct: 108 LTDAVKVMDLPTQEPALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVHPQK 167
Query: 156 -------------GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VV 201
G S C+GDSGG +V L+GI S G C +
Sbjct: 168 VTKFMLCAGRWTGGKSTCSGDSGGPLVCN----GVLQGITSW-----GSEPCALPERPSL 218
Query: 202 FTDVAN 207
+T V +
Sbjct: 219 YTKVVH 224
Score = 65.3 bits (160), Expect = 2e-12
Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 24/122 (19%)
Query: 253 DVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQ 301
V +P ++ S + D+ LL+LS + + V+ + L A
Sbjct: 67 QVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKVMDLPTQEPAL-- 124
Query: 302 LSAVEGRDGTVIGWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCA 359
G GWG E ++L+ + ++S+ C +P + T CA
Sbjct: 125 -----GTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVHP---QKVTKF-MLCA 175
Query: 360 GF 361
G
Sbjct: 176 GR 177
>1z8g_A Serine protease hepsin; serine protease hepsin, protease,
hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A
{Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A
1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Length = 372
Score = 112 bits (281), Expect = 3e-28
Identities = 63/249 (25%), Positives = 89/249 (35%), Gaps = 77/249 (30%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G+ T+ G+WPW V+L + +++CGGSL+S ++V+TAAHC ++ +
Sbjct: 121 GRDTSLGRWPWQVSLR----YDGAHLCGGSLLSGDWVLTAAHCF----PERNRVLSRWRV 172
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTF------NSSNYLGDIALLQLSSDVDYSMYV 136
+ G Q V+ V + + NS DIAL+ LSS + + Y+
Sbjct: 173 FAGAVAQASPH----GLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYI 228
Query: 137 RPVCL-----------------W----DDSTAPLQLSAVE----GTSVCNG-DSGGGMVF 170
+PVCL W L VCNG D G +
Sbjct: 229 QPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIK 288
Query: 171 KIDS---AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMV----FKIDS 223
A Y G + D C GDSGG V
Sbjct: 289 --PKMFCAGYPEGGI------------DA------------CQGDSGGPFVCEDSISRTP 322
Query: 224 AWYLRGIVS 232
W L GIVS
Sbjct: 323 RWRLCGIVS 331
Score = 77.5 bits (191), Expect = 5e-16
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 14/124 (11%)
Query: 245 TKHYVVFTDVKRVHIYPTF------NSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTA 298
+ + V+ V + + NS DIAL+ LSS + + Y++PVCL A
Sbjct: 180 ASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQA 239
Query: 299 PLQLSAVEGRDGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETF 357
V+G+ TV GWG + + L+ A +PI+S+ C + F+ + F
Sbjct: 240 L-----VDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVC--NGADFYGNQIKPKMF 292
Query: 358 CAGF 361
CAG+
Sbjct: 293 CAGY 296
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase;
1.42A {Equus caballus} SCOP: b.47.1.2
Length = 237
Score = 108 bits (273), Expect = 5e-28
Identities = 54/246 (21%), Positives = 82/246 (33%), Gaps = 86/246 (34%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G + + PW VA+Y + CGG LV +V+TAAHC++ I
Sbjct: 4 GWECEKHSKPWQVAVYH----QGHFQCGGVLVHPQWVLTAAHCMSDD----------YQI 49
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVD 131
+LG+++ + DE Q QV + P F+ S + D+ LL+L+
Sbjct: 50 WLGRHNLSK--DEDTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPAR 107
Query: 132 YSMYVRPVCL---------------W-----DDSTAPLQLSAVE---------------- 155
+ V+ + L W + L VE
Sbjct: 108 ITDAVKILDLPTQEPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAYPEK 167
Query: 156 -------------GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VV 201
S+C GDSGG ++ +GI S G C + V
Sbjct: 168 MTEFVLCATHRDDSGSICLGDSGGALICD----GVFQGITSW-----GYSECADFNDNFV 218
Query: 202 FTDVAN 207
FT V
Sbjct: 219 FTKVMP 224
Score = 65.3 bits (160), Expect = 2e-12
Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 24/122 (19%)
Query: 253 DVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQ 301
V + P F+ S + D+ LL+L+ + V+ + L
Sbjct: 67 QVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQEPKL-- 124
Query: 302 LSAVEGRDGTVIGWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCA 359
G GWG +R S L+ + + S+++C + + + ++ CA
Sbjct: 125 -----GSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCA----RAYPEKMTEFVLCA 175
Query: 360 GF 361
Sbjct: 176 TH 177
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG;
1.70A {Homo sapiens}
Length = 238
Score = 107 bits (270), Expect = 1e-27
Identities = 58/247 (23%), Positives = 86/247 (34%), Gaps = 87/247 (35%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G + + PW ALY + CGG LV +V+TAAHC+ SD +
Sbjct: 4 GWECEQHSQPWQAALYHFST----FQCGGILVHRQWVLTAAHCI----------SDNYQL 49
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVD 131
+LG++ + F DE Q V +P FN S +Y D+ LL+L+ D
Sbjct: 50 WLGRH--NLFDDENTAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPAD 107
Query: 132 -YSMYVRPVCL---------------W-----DDSTAPLQLSAVE--------------- 155
+ V+ V L W ++ + P L V+
Sbjct: 108 TITDAVKVVELPTEEPEVGSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECKKAHVQ 167
Query: 156 --------------GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-V 200
G C GDSGG ++ L+G+ S G C T +
Sbjct: 168 KVTDFMLCVGHLEGGKDTCVGDSGGPLMCD----GVLQGVTSW-----GYVPCGTPNKPS 218
Query: 201 VFTDVAN 207
V V +
Sbjct: 219 VAVRVLS 225
Score = 64.9 bits (159), Expect = 3e-12
Identities = 26/123 (21%), Positives = 42/123 (34%), Gaps = 25/123 (20%)
Query: 253 DVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVD-YSMYVRPVCLWDDSTAPL 300
V +P FN S +Y D+ LL+L+ D + V+ V L +
Sbjct: 67 HVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVKVVELPTEEPEV- 125
Query: 301 QLSAVEGRDGTVIGWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFC 358
G GWG EN ++L+ + I+ + +C + T C
Sbjct: 126 ------GSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDEC---KKAHVQKVTDF-MLC 175
Query: 359 AGF 361
G
Sbjct: 176 VGH 178
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes
scabiei type hominis}
Length = 235
Score = 102 bits (257), Expect = 8e-26
Identities = 37/233 (15%), Positives = 74/233 (31%), Gaps = 58/233 (24%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G+K+ + PW V + + CGGS+++ N+VITAA CV + I
Sbjct: 4 GKKSDITKEPWAVGVLV----DEKPFCGGSILTANFVITAAQCV------DGTKPSDISI 53
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYS-MYVRPVCL 141
+ G ++ + K++ ++ + A+++ + + + L
Sbjct: 54 HYGSSYR-----TTKGTSVMAKKI-YIVRYHPLTMQNNYAVIETEMPIKLDDKTTKKIEL 107
Query: 142 WDDSTAPLQLSAVEGTSVC------NGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD 195
P L E + + + + + L + TV + C+
Sbjct: 108 ------PSLLYDPEPDTSVLVSGWGSTNFKSL-----EYSGDLME-ANFTVVDR--KSCE 153
Query: 196 TKHYVVFTDVANV----------------CNGDSGGGMVFKIDSAWYLRGIVS 232
+ Y + GD+G V L G+ S
Sbjct: 154 -EQYKQIEADKYIYDGVFCAGGEYDETYIGYGDAGDPAVQN----GTLVGVAS 201
Score = 69.5 bits (171), Expect = 6e-14
Identities = 17/115 (14%), Positives = 35/115 (30%), Gaps = 12/115 (10%)
Query: 254 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYS-MYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
K++ ++ + A+++ + + + L L V
Sbjct: 69 AKKI-YIVRYHPLTMQNNYAVIETEMPIKLDDKTTKKIEL-----PSLLYDPEPDTSVLV 122
Query: 313 IGWGY--DENDRVSEELKMAIMPIVSHQQC--LWSNPQFFSQFTSDETFCAGFRN 363
GWG ++ S +L A +V + C + + FCAG
Sbjct: 123 SGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEADKYIYDGV-FCAGGEY 176
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 107 bits (267), Expect = 2e-25
Identities = 63/257 (24%), Positives = 88/257 (34%), Gaps = 72/257 (28%)
Query: 2 CYRDVSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVIT 61
D V K V G WPW V+L G + CGG+L+S +V+T
Sbjct: 544 PSFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFG---MHFCGGTLISPEWVLT 600
Query: 62 AAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDI 121
AAHC+ K P + + LG + + E VQ +V R+ + PT DI
Sbjct: 601 AAHCLEKSP-----RPSSYKVILGAHQEVNL--EPHVQEIEVSRLFLEPTRK------DI 647
Query: 122 ALLQLSSDVDYSMYVRPVCL-----------------W-----DDSTAPLQLSAVE---- 155
ALL+LSS + V P CL W L+ + +
Sbjct: 648 ALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIEN 707
Query: 156 -------------------------GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDG 190
GT C GDSGG +V + L+G+ S G
Sbjct: 708 KVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSW-----G 762
Query: 191 LRVCDTKHYVVFTDVAN 207
L V+ V+
Sbjct: 763 LGCARPNKPGVYVRVSR 779
Score = 74.7 bits (183), Expect = 8e-15
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 13/114 (11%)
Query: 248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEG 307
+V +V R+ + PT DIALL+LSS + V P CL +
Sbjct: 629 HVQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVIPACL-----PSPNYVVADR 677
Query: 308 RDGTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
+ + GWG + + LK A +P++ ++ C + +F + CAG
Sbjct: 678 TECFITGWGETQGTFGAGLLKEAQLPVIENKVC--NRYEFLNGRVQSTELCAGH 729
>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_A 1hia_A
Length = 80
Score = 72.5 bits (179), Expect = 2e-16
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
G++ + PW VA+Y S+ CGG LV+ +V+TAAHC +D +
Sbjct: 4 GRECEKNSHPWQVAIYHYS----SFQCGGVLVNPKWVLTAAHCK----------NDNYEV 49
Query: 83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS 115
+LG+++ + +E Q V +P FN S
Sbjct: 50 WLGRHNLFE--NENTAQFFGVTADFPHPGFNLS 80
>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_B 1hia_B
Length = 152
Score = 62.2 bits (152), Expect = 5e-12
Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 15/102 (14%)
Query: 264 NSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGY----DE 319
+ +Y D+ LL+L S + V+ + L P Q G GWG +
Sbjct: 2 DGKDYSHDLMLLRLQSPAKITDAVKVLEL------PTQ-EPELGSTCEASGWGSIEPGPD 54
Query: 320 NDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
+ +E++ + ++ + C ++P + T CAG+
Sbjct: 55 DFEFPDEIQCVQLTLLQNTFCADAHPD---KVTES-MLCAGY 92
Score = 44.5 bits (106), Expect = 8e-06
Identities = 23/122 (18%), Positives = 36/122 (29%), Gaps = 55/122 (45%)
Query: 113 NSSNYLGDIALLQLSSDVDYSMYVRPVCL---------------W-------DDSTAPLQ 150
+ +Y D+ LL+L S + V+ + L W DD P +
Sbjct: 2 DGKDYSHDLMLLRLQSPAKITDAVKVLELPTQEPELGSTCEASGWGSIEPGPDDFEFPDE 61
Query: 151 LSAVE-----------------------------GTSVCNGDSGGGMVFKIDSAWYLRGI 181
+ V+ G C GDSGG ++ +GI
Sbjct: 62 IQCVQLTLLQNTFCADAHPDKVTESMLCAGYLPGGKDTCMGDSGGPLICN----GMWQGI 117
Query: 182 VS 183
S
Sbjct: 118 TS 119
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus
intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Length = 215
Score = 54.2 bits (130), Expect = 9e-09
Identities = 31/205 (15%), Positives = 63/205 (30%), Gaps = 33/205 (16%)
Query: 29 GQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYH 88
P++ Y T G C G+L++ N ++T HCV ++
Sbjct: 15 RVAPYNSIAYITFG---GSSCTGTLIAPNKILTNGHCVYNTASRSYSAKGSVYPG----- 66
Query: 89 QHQFSDEGGVQNKQVKRVHIYP-TFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTA 147
+ + ++ N+ D A+++ +++ + V + +
Sbjct: 67 --MNDSTAVNGSANMTEFYVPSGYINTGASQYDFAVIKTDTNIGNT--VGYRSIRQVTNL 122
Query: 148 PLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVAN 207
+ G S G S W + G V+ DT
Sbjct: 123 TGTTIKISGYPGDKMRSTGK-----VSQWEMSGSVTREDTNLAYYTIDT----------- 166
Query: 208 VCNGDSGGGMVFKIDSAWYLRGIVS 232
+G+SG M+ D + G+ +
Sbjct: 167 -FSGNSGSAML---DQNQQIVGVHN 187
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A
{Nesterenkonia abyssinica}
Length = 218
Score = 50.9 bits (121), Expect = 1e-07
Identities = 26/206 (12%), Positives = 52/206 (25%), Gaps = 27/206 (13%)
Query: 31 WPWHVALYRTEGINLSYVCGGSLV---SVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKY 87
P ++ +VC ++V + + V TA HC+ + +
Sbjct: 6 SPHIGKVF-FSTNQGDFVCSANIVASANQSTVATAGHCLHDGNGGQFARNFVFAP----- 59
Query: 88 HQHQFSDEGGVQNKQVKRVHIYPTF-NSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDST 146
E GV + + + N ++ D A L + ++ +
Sbjct: 60 AYDYGESEHGVWA--AEELVTSAEWANRGDFEHDYAFAVLETKGGTTVQQQVGTA----- 112
Query: 147 APLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVA 206
+P+ + G F G + +
Sbjct: 113 SPIAFNQPRGQYYSAYGYPAAAPFNGQELHSCHGTATNDPMGSSTQGIPC---------- 162
Query: 207 NVCNGDSGGGMVFKIDSAWYLRGIVS 232
N+ G SGG + S
Sbjct: 163 NMTGGSSGGPWFLGNGTGGAQNSTNS 188
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 8e-06
Identities = 30/183 (16%), Positives = 52/183 (28%), Gaps = 55/183 (30%)
Query: 51 GSLVSVNYVITA---AHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVH 107
+LV +I A + K+P+DK +S +
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALF------------------RAVGEGNAQ 155
Query: 108 IYPTF----NSSNYLGDIALLQLSSDVDYSMY---VRPVCLWDDSTAPLQLSAVEGTSVC 160
+ F N+ +Y ++ L Y Y V + +A + T
Sbjct: 156 LVAIFGGQGNTDDYFEELRDL-------YQTYHVLVGDLI---KFSAETLSELIRTTLDA 205
Query: 161 NGDSGGGMVFKIDSAW-----------YLRGIVSITVARDGLRVCDTKHYVVFTDVANVC 209
G+ W YL +SI ++ + V HYVV +
Sbjct: 206 EKVFTQGLNIL---EWLENPSNTPDKDYL---LSIPISCPLIGVIQLAHYVVTAKLLGFT 259
Query: 210 NGD 212
G+
Sbjct: 260 PGE 262
Score = 27.3 bits (60), Expect = 9.8
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 22/69 (31%)
Query: 44 NLS---YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQN 100
N+ YV G L +++ V + + + D +I L Q S E
Sbjct: 1847 NVENQQYVAAGDLRALDTVTNVLNFIKLQKID--------IIEL----QKSLSLE----- 1889
Query: 101 KQVKRVHIY 109
+V+ H++
Sbjct: 1890 -EVEG-HLF 1896
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme,
hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1
PDB: 1qy6_A
Length = 274
Score = 45.6 bits (107), Expect = 1e-05
Identities = 17/105 (16%), Positives = 38/105 (36%), Gaps = 15/105 (14%)
Query: 30 QWPW-HVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYH 88
+ V + E +++ G +V + ++T H V D L + +
Sbjct: 16 NGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVV----DATHGDPHALKAFPSAIN 71
Query: 89 QHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYS 133
Q + + GG +Q+ + GD+A+++ S +
Sbjct: 72 QDNYPN-GGFTAEQI---------TKYSGEGDLAIVKFSPNEQNK 106
>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C*
1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C
1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...
Length = 97
Score = 42.5 bits (101), Expect = 1e-05
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 155 EGTSVCNGDSGGGMVFKIDSAWYLRGIVS 183
G S C GDSGG +V K + AW L GIVS
Sbjct: 38 SGVSSCMGDSGGPLVCKKNGAWTLVGIVS 66
Score = 41.0 bits (97), Expect = 5e-05
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 209 CNGDSGGGMVFKIDSAWYLRGIVS 232
C GDSGG +V K + AW L GIVS
Sbjct: 43 CMGDSGGPLVCKKNGAWTLVGIVS 66
Score = 26.3 bits (59), Expect = 5.7
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 324 SEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAG 360
+ L+ A +P++S+ C + ++ CAG
Sbjct: 4 PDRLQQASLPLLSNTNC---KKYWGTKIKDAM-ICAG 36
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 2e-04
Identities = 61/366 (16%), Positives = 105/366 (28%), Gaps = 104/366 (28%)
Query: 66 VTKKPYD-----KPVDSDTLVIY---LGKYHQ--HQFSDEGGVQN-----KQVKRVHIYP 110
++K+ D K S TL ++ L K + +F +E N +K P
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 111 TFNSSNYLGDIALLQLSSDVDYSMYV-RPVCLWDDSTAPLQLSAVEGTSVCNGDSGGG-- 167
+ + Y+ L + V V R A L+L + + G G G
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-GVLGSGKT 164
Query: 168 ---------------MVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVC--- 209
M FKI W + + C++ V + +
Sbjct: 165 WVALDVCLSYKVQCKMDFKI--FW-------LNLKN-----CNSPE-TVLEMLQKLLYQI 209
Query: 210 ------NGDSGGGMVFKIDSA-WYLRGIVSITVARDGL----RVCDTKHYVVF------- 251
D + +I S LR ++ + L V + K + F
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 252 -----------------TDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWD 294
T + H T LL D R V
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS---LLLKYLDCRPQDLPREVL--- 323
Query: 295 DSTAPLQLS--AVEGRDG--TVIGWGYDENDRVSEELKMAI--MPIVSHQQCLWSNPQFF 348
+T P +LS A RDG T W + D+++ ++ ++ + +++
Sbjct: 324 -TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR----L 378
Query: 349 SQFTSD 354
S F
Sbjct: 379 SVFPPS 384
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 41.2 bits (96), Expect = 2e-04
Identities = 31/202 (15%), Positives = 63/202 (31%), Gaps = 35/202 (17%)
Query: 30 QWPWH-VALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYH 88
+ V + E +++ G +V + ++T H V D L + +
Sbjct: 16 NGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVV----DATHGDPHALKAFPSAIN 71
Query: 89 QHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP 148
Q + + GG +Q+ + GD+A+++ S + + P
Sbjct: 72 QDNYPN-GGFTAEQIT---------KYSGEGDLAIVKFSPNEQNKHI-------GEVVKP 114
Query: 149 LQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANV 208
+S T V I Y T+ ++ K + D +
Sbjct: 115 ATMSNNAETQV--NQ-------NITVTGYPGDKPVATMWESKGKITYLKGEAMQYD-LST 164
Query: 209 CNGDSGGGMVFKIDSAWYLRGI 230
G+SG + + + GI
Sbjct: 165 TGGNSGSPV---FNEKNEVIGI 183
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.007
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 31/59 (52%)
Query: 99 QNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP-LQLSA-VE 155
+ + +K++ +S L+L Y+ DS AP L + A +E
Sbjct: 18 EKQALKKLQ------AS--------LKL-----YA----D-----DS-APALAIKATME 47
Score = 32.6 bits (73), Expect = 0.096
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 11/36 (30%)
Query: 273 ALLQLSSDVDYSMYVRPVCLWDDSTAP-LQLSA-VE 306
AL +L + + +Y DS AP L + A +E
Sbjct: 21 ALKKLQASL--KLYA-D-----DS-APALAIKATME 47
>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A
{Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*
Length = 268
Score = 35.8 bits (81), Expect = 0.017
Identities = 26/208 (12%), Positives = 52/208 (25%), Gaps = 29/208 (13%)
Query: 30 QWPWHVALYRTEGINLSYVCGGSLVSV------NYVITAAHCVTKKPYDKPVDSDTLVIY 83
+ + + C GSLV+ Y +TA HC + ++V+Y
Sbjct: 17 GRRDIIRAVGAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCG----MGTASTAASIVVY 72
Query: 84 LGKYHQHQFSDEGGVQNKQVKRVHIYPT-----FNSSNYLGDIALLQLSSDVDYSMYVRP 138
Y + + T ++ D LL+L++ + +
Sbjct: 73 WN-YQNSTCRAPNTPASGANGDGSMSQTQSGSTVKATYATSDFTLLELNNAANPA----- 126
Query: 139 VCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKH 198
++ A +I + G T
Sbjct: 127 ---FNLFWAGWDRRDQNYPGAIAIHHPNVAEKRIS-----NSTSPTSFVAWGGGAGTTHL 178
Query: 199 YVVFTDVANVCNGDSGGGMVFKIDSAWY 226
V + V S G ++ +
Sbjct: 179 NVQWQPSGGVTEPGSSGSPIYSPEKRVL 206
>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase;
2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A
Length = 246
Score = 31.8 bits (72), Expect = 0.27
Identities = 10/83 (12%), Positives = 25/83 (30%), Gaps = 7/83 (8%)
Query: 51 GSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYP 110
G L+ N ++T H + S+ + + + + + P
Sbjct: 52 GVLIGKNTIVTNYHVARE---AAKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESP 108
Query: 111 TFNSSNYLGDIALLQLSSDVDYS 133
D+A+++L +
Sbjct: 109 YGQGL----DLAIIKLKPNEKGE 127
>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}
Length = 204
Score = 30.2 bits (68), Expect = 0.72
Identities = 29/189 (15%), Positives = 63/189 (33%), Gaps = 34/189 (17%)
Query: 51 GSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYP 110
G +V N ++T H + V H SD+G +K++ YP
Sbjct: 26 GFVVGKNTILTNKHVS----KNYKVGDRITA--------HPNSDKGNGGIYSIKKIINYP 73
Query: 111 TFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVF 170
D++++Q+ ++D+ P + +A G+ +
Sbjct: 74 GKE------DVSVIQVEERAIERGPKGFN--FNDNVTPFKYAA----GAKAGER----IK 117
Query: 171 KIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGI 230
I + + + V + + A+ +G+SG + ++S L GI
Sbjct: 118 VIGYPHPYKNKYVLYESTG--PVMSVEGSSIVYS-AHTESGNSGSPV---LNSNNELVGI 171
Query: 231 VSITVARDG 239
+ ++
Sbjct: 172 HFASDVKND 180
>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A
{Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A
1exf_A 1due_A
Length = 242
Score = 28.7 bits (64), Expect = 2.9
Identities = 33/190 (17%), Positives = 56/190 (29%), Gaps = 31/190 (16%)
Query: 51 GSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYP 110
G L+ N V+T H D + + E +VK + P
Sbjct: 59 GVLIGKNTVLTNRHIAK----FANGDPSKVSFRPSINTDDNGNTETPYGEYEVKEILQEP 114
Query: 111 TFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVF 170
D+AL++L D + D +P ++ GD +
Sbjct: 115 FGAGV----DLALIRLKPDQNGVSL-------GDKISPAKIGTSNDLKD--GD----KLE 157
Query: 171 KIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVA-NVCNGDSGGGMVFKIDSAWYLRG 229
I V+ + R + + + G+SG G+ +S L G
Sbjct: 158 LIGYP--FDHKVN-QMHRSEIELTTLSRGLR-YYGFTV--PGNSGSGIF---NSNGELVG 208
Query: 230 IVSITVARDG 239
I S V+
Sbjct: 209 IHSSKVSHLD 218
>1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase;
2.40A {Sesbania mosaic virus}
Length = 191
Score = 27.1 bits (59), Expect = 7.2
Identities = 22/160 (13%), Positives = 49/160 (30%), Gaps = 22/160 (13%)
Query: 26 TARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLG 85
G P + ++ + + C + + ++TA H +
Sbjct: 9 VKAGDEPASLVAIKSGPTTIGFGCRTKIDGEDCLLTAHHVWCNSMRPTGLAKA------- 61
Query: 86 KYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDS 145
KQV + +SS+ + D A++++ + V + V+
Sbjct: 62 --------------GKQVSVEDWEISMSSSDKMLDFAIVRVPTHVWSKLGVKST-PLVCP 106
Query: 146 TAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSIT 185
++ ++ G+S SG G + W L
Sbjct: 107 SSKDVITCYGGSSSDCLMSGVGSSSTSEFTWKLTHTCPTA 146
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding
protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A*
3p7z_A* 2d4q_A*
Length = 256
Score = 26.8 bits (59), Expect = 9.4
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Query: 231 VSITVARDGLRVCDTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSD 280
VSI V ++V + V+ V IY Y +I + L +
Sbjct: 173 VSIKVGSTAVQVTSAERTVLGQSVFLNDIY-------YASEIEEICLVDE 215
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.434
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,599,809
Number of extensions: 327575
Number of successful extensions: 1436
Number of sequences better than 10.0: 1
Number of HSP's gapped: 956
Number of HSP's successfully gapped: 377
Length of query: 363
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 268
Effective length of database: 4,049,298
Effective search space: 1085211864
Effective search space used: 1085211864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)