Query psy15991
Match_columns 393
No_of_seqs 169 out of 1099
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 18:10:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15991.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15991hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3900|consensus 100.0 6.6E-47 1.4E-51 380.0 21.2 327 43-391 41-385 (413)
2 smart00204 TGFB Transforming g 100.0 4.3E-33 9.3E-38 224.9 5.8 73 313-391 1-74 (102)
3 PF00688 TGFb_propeptide: TGF- 100.0 2.6E-30 5.7E-35 240.6 12.5 212 36-257 14-238 (238)
4 PHA02913 TGF-beta-like protein 99.9 1.5E-28 3.3E-33 211.1 5.9 73 309-391 73-146 (172)
5 PF00019 TGF_beta: Transformin 99.9 2.5E-28 5.4E-33 199.1 3.2 75 311-391 2-77 (105)
6 PF06848 Disaggr_repeat: Disag 98.2 1.5E-05 3.3E-10 68.9 10.9 96 132-227 32-161 (182)
7 PF02512 UK: Virulence determi 75.6 1.1 2.3E-05 33.8 0.4 10 382-391 66-75 (96)
8 PF10330 Stb3: Putative Sin3 b 65.1 4.1 8.9E-05 31.7 1.6 19 320-338 62-80 (92)
9 PF10430 Ig_Tie2_1: Tie-2 Ig-l 59.6 2.4 5.2E-05 32.8 -0.6 22 326-348 65-86 (96)
10 KOG2987|consensus 46.9 3.7 8.1E-05 38.3 -1.5 21 323-348 62-82 (324)
11 PF07754 DUF1610: Domain of un 46.9 8.3 0.00018 22.4 0.5 14 329-342 5-19 (24)
12 smart00728 ChW Clostridial hyd 31.6 19 0.00041 24.4 0.4 11 322-332 3-13 (46)
13 PF13319 DUF4090: Protein of u 28.1 34 0.00075 25.8 1.3 16 73-88 18-33 (84)
14 TIGR03849 arch_ComA phosphosul 27.6 27 0.00059 32.5 0.9 28 318-345 23-61 (237)
15 PF07538 ChW: Clostridial hydr 24.5 26 0.00057 22.3 0.1 12 322-333 2-13 (36)
16 PF05841 Apc15p: Apc15p protei 20.4 43 0.00094 27.9 0.7 14 322-337 91-104 (125)
17 PF05093 CIAPIN1: Cytokine-ind 20.4 42 0.00091 26.8 0.5 10 338-348 77-86 (100)
18 PF13313 DUF4082: Domain of un 20.1 2.4E+02 0.0053 24.3 5.1 51 149-207 33-84 (149)
No 1
>KOG3900|consensus
Probab=100.00 E-value=6.6e-47 Score=379.99 Aligned_cols=327 Identities=23% Similarity=0.356 Sum_probs=206.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCchHHHHHHHHhccCCCCCCc-cCcC-CCCCCccccccCCcccCccccC
Q psy15991 43 EKQDVSHDLLNLLGLPLRPKHLFSNATSIEGSVPKFLMDIYRSLDNPRRTTR-SEFN-LGGKDLQSIDESDMIMGFSSRN 120 (393)
Q Consensus 43 ~~~~~~~~iL~~LgL~~~P~~~~~~~~~~~~~~P~~Ml~LY~~~~~~~~~~~-~~~~-~~~~d~~~i~~ad~Irsf~~~~ 120 (393)
..+.++..||.+|.|+.+|.+. .+.++|.+|+++|+...+...... .... ....+......++++++|....
T Consensus 41 ~~e~~~~~~L~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (413)
T KOG3900|consen 41 RLEALKRLILEKLPLPSAPLFN------KPSSAPLQLLDLLRAGRGEPEESDLERLNSRSEEDLELLASANSVRSFVSLE 114 (413)
T ss_pred HHHHHhhcchhcccccCccccc------cccccCHHhhhhhhhcccCCcccccccccccccccccccccCCcceeeeccc
Confidence 5677888888888888888774 223899999999999873211100 0000 0112334456678999998752
Q ss_pred Cc---cccccccCCeEEEEEccCCCCCCeeEEEEEEEEecccCCC----CCCceeE-EEEEEEeeC-----CeeEEEeeE
Q psy15991 121 HH---VSNVRHEHGKRIWFDVSEVPPGETIVNSELRIYQMINTTA----DPWLQFT-VSIYQVLVD-----GELEYVDSV 187 (393)
Q Consensus 121 ~~---~~~~~~~~~~~~~F~ls~i~~~e~v~~AeLrly~~~~~~~----~~~~~~~-v~vy~v~~~-----~~~~ll~s~ 187 (393)
.. ...........+.|+++.++..+.+..||||+|+...... ..+.... |.+|++... ....+++++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (413)
T KOG3900|consen 115 LSRLSLDGNSELHFGDLLFDLRSIPSWEALPAAELRLYRRPVPDKLISAEANESLEELSPYDVLSSPLGRANDARLLSSR 194 (413)
T ss_pred ccceecCCcccccchhhhcccccccchhhccccceeeecccccccccccccCcceeEEEeeeeccccccCCCceeecccc
Confidence 21 1111111226778888889999999999999998876442 2233333 888886554 456778888
Q ss_pred EeecCCCceEEEEcchhhHhhhhCCCCCceeEEEEEecCCCCcccccccccccccccCCCCCCccEEEEEEcCCCCCCCC
Q psy15991 188 NTTAGSEGWMLFNVTGPLVSWVAIPHSNKGLYLSVQPREKPIHEIRTEDIGIVASKVMHLEEKQPFMVAFFKSAHGGITV 267 (393)
Q Consensus 188 ~v~~~~~gW~~fdVT~~v~~W~~~~~~n~gl~v~v~~~~~~~~~v~~~~~~~~~~~~~~~~~~~PfLV~~~~~~~~~~~~ 267 (393)
.+.....||+.||||.+++.|...+..+.|+++.+.....+.........+...... .....++++.............
T Consensus 195 ~~~~~~~~W~~fdvt~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 273 (413)
T KOG3900|consen 195 LVALRLSGWIQFDVTSLVKRWALLSLSNLGLELQAEVVDRPLDPLLELSHLLLGRAG-TPGALQLLLSAKPPASEKDPDL 273 (413)
T ss_pred ceecCCCccEEeeHHHHHHHHHhcccccCceeEEEEeccccccccccccceeeeecC-Cccccchhhhhccccccccccc
Confidence 888888889999999999999998889999999998765421111000111111111 1223333433222211100000
Q ss_pred CC--C-cccccccccccccccccccCCCCCCCCCCCcchhhcccCCCCceEEeeeEeeecCCccceEEcCCccccceeee
Q psy15991 268 RP--R-SRRIRETTKSRKRKSMTETSNYRNPYTGFSDSMKEAAYNSHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCKQ 344 (393)
Q Consensus 268 ~~--r-~~r~~~~~~rR~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~C~r~~LyVdF~dlGW~dWIIAP~gY~A~yC~G 344 (393)
.. . ..+.....+.+...........+. ..+....+.|||++|||||++|||+||||||+||+||||+|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~Ccr~~lyV~F~~lGW~dWIIaP~gy~A~yC~G 344 (413)
T KOG3900|consen 274 ELSTLPSRRRELRLRPRQRHDRRRRRARRG---------RNCEGARNRCCRRPLYVDFRDLGWDDWIIAPKGYDANYCSG 344 (413)
T ss_pred cccccccccccccccccccccchhcccccc---------ccCCCCCCceeccceEeehhhcCCcceEeCCCcccCceecC
Confidence 00 0 000000000000000000000000 01344567899999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCChHHHHHHHHHHhcCCCCCCCCCCCCccccccCCC
Q psy15991 345 KYNSDPFRVNYENIPEYKRFLEAKRNLQNVPPKPQSLMCWAIHNLED 391 (393)
Q Consensus 345 ~Cp~pl~~~~~tNHA~~qs~v~~l~~~~~vp~~~~~~pCCvPtkl~~ 391 (393)
+||||+.++++||||++|+++|++. |.++++||||||||++
T Consensus 345 ~C~~p~~~~~~tnHa~vq~l~~~~~------p~~~p~pCCvPtklsp 385 (413)
T KOG3900|consen 345 TCPFPLADHAATNHAIVQTLVHAVN------PEPVPKPCCVPTKLSP 385 (413)
T ss_pred cCCCchhhcCCcchHHHHHHHHhhC------CCCCCCCccccCccCc
Confidence 9999998799999999999999774 4457889999999984
No 2
>smart00204 TGFB Transforming growth factor-beta (TGF-beta) family. Family members are active as disulphide-linked homo- or heterodimers. TGFB is a multifunctional peptide that controls proliferation, differentiation, and other functions in many cell types.
Probab=99.98 E-value=4.3e-33 Score=224.92 Aligned_cols=73 Identities=33% Similarity=0.672 Sum_probs=66.7
Q ss_pred ceEEeeeEeeecCCccceEEcCCccccceeeeccCCCCC-CCCCCChHHHHHHHHHHhcCCCCCCCCCCCCccccccCCC
Q psy15991 313 CSIQTLYVNFRDLEWQDWIIAPDGYGAFYCKQKYNSDPF-RVNYENIPEYKRFLEAKRNLQNVPPKPQSLMCWAIHNLED 391 (393)
Q Consensus 313 C~r~~LyVdF~dlGW~dWIIAP~gY~A~yC~G~Cp~pl~-~~~~tNHA~~qs~v~~l~~~~~vp~~~~~~pCCvPtkl~~ 391 (393)
|||++|||||+||||+||||||+||+||||.|.|++|+. ++++||||++|++++.+.. ..++.|||+|++|++
T Consensus 1 Ccr~~l~VdF~~iGW~~wIiaP~~y~a~yC~G~C~~~~~~~~~~~~Ha~i~~~~~~~~~------~~~~~pCC~P~~~~~ 74 (102)
T smart00204 1 CRRRQLYVDFKDLGWDDWIIAPKGYNAYYCEGECPFPLSTSLNATNHAIVQTLVHLLGP------NPVPKPCCVPTKLSP 74 (102)
T ss_pred CceeEEEEEHhhcCCcceEEcCCceeeeEEeeeCCCCcccccCCcchhhhhhhHHhcCC------CCCCCCCccCceEec
Confidence 999999999999999999999999999999999999999 6899999999999997642 235679999999986
No 3
>PF00688 TGFb_propeptide: TGF-beta propeptide; InterPro: IPR001111 The transforming growth factor beta, N terminus (TGFb) domain is present in a variety of proteins which include the transforming growth factor beta, decapentaplegic proteins and bone morphogenetic proteins. Transforming growth factor beta is a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types. The decapentaplegic protein acts as an extracellular morphogen responsible for the proper development of the embryonic dorsal hypoderm, for viability of larvae and for cell viability of the epithelial cells in the imaginal disks. Bone morphogenetic protein induces cartilage and bone formation and may be responsible for epithelial osteogenesis in some organisms.; GO: 0008083 growth factor activity, 0040007 growth; PDB: 3RJR_A.
Probab=99.97 E-value=2.6e-30 Score=240.59 Aligned_cols=212 Identities=26% Similarity=0.506 Sum_probs=119.3
Q ss_pred ccccChHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCchHHHHHHHHhcc--CCCCCCccCcCCCCCCccccccCCcc
Q psy15991 36 QRTLSTKEKQDVSHDLLNLLGLPLRPKHLFSNATSIEGSVPKFLMDIYRSLD--NPRRTTRSEFNLGGKDLQSIDESDMI 113 (393)
Q Consensus 36 ~~~~~~~~~~~~~~~iL~~LgL~~~P~~~~~~~~~~~~~~P~~Ml~LY~~~~--~~~~~~~~~~~~~~~d~~~i~~ad~I 113 (393)
...+....+++||++||++|||+++|++. ......+|+||++||+.+. +..+.. .+.. .......++|||
T Consensus 14 ~~~~~~~~~e~ik~~iL~~Lgl~~~P~~~----~~~~~~~P~~ml~LY~~~~~~~~~~~~-~~~~---~~~~~~~~~~tV 85 (238)
T PF00688_consen 14 REELRQHRLEAIKQQILDKLGLSERPNPP----QSPRPSVPQYMLDLYRRLSQADHSGAS-EDFC---ESSESPDRANTV 85 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-SS---TT----SS--S---HHHHHHHHHHH-S--EEE------------CCCSS-EEE
T ss_pred hhhhHHHHHHHHHHHHHHHcCCCCCCCcc----ccCcccchhhHHHHHHHhhcccccccc-cccc---ccccccccccce
Confidence 34455577799999999999999999981 1256899999999999985 222111 0100 011223349999
Q ss_pred cCccccCCccc-cccccCCeEEEEEccCCCCCCeeEEEEEEEEecccCCCCCCceeEEEEEEEeeC------CeeEEEee
Q psy15991 114 MGFSSRNHHVS-NVRHEHGKRIWFDVSEVPPGETIVNSELRIYQMINTTADPWLQFTVSIYQVLVD------GELEYVDS 186 (393)
Q Consensus 114 rsf~~~~~~~~-~~~~~~~~~~~F~ls~i~~~e~v~~AeLrly~~~~~~~~~~~~~~v~vy~v~~~------~~~~ll~s 186 (393)
|+|.+...... .........|.||+|.++.++.|.+||||||+...........+.|.||++..+ ....+|++
T Consensus 86 rsf~~~~~~~~~~~~~~~~~~~~F~ls~~~~~~~v~~AeLrl~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~l~s 165 (238)
T PF00688_consen 86 RSFAEKGSDSPSSSSSSNRWHLYFDLSSIPSSETVSSAELRLYKQPPSNSSSPRTVRVSVYQVLQPGRRNGSQSKRLLDS 165 (238)
T ss_dssp EEEE---SSTTTT---TTEEEEEE-HHHHSSTTT--EEEEEEEB-------TT--EEEEEEEE-------SSS-EEEEEE
T ss_pred eeccccccccccccCCCceeEEEEecccccccccceEEEEEEEeeccccccccccccccccccccccccccccceeeeee
Confidence 99998754311 111223389999999999999999999999998754223467899999998642 57889999
Q ss_pred EEeecCCCceEEEEcchhhHhhhhCCCCCceeEEEEEecCCCCcccccccccccccc----cCCCCCCccEEEEE
Q psy15991 187 VNTTAGSEGWMLFNVTGPLVSWVAIPHSNKGLYLSVQPREKPIHEIRTEDIGIVASK----VMHLEEKQPFMVAF 257 (393)
Q Consensus 187 ~~v~~~~~gW~~fdVT~~v~~W~~~~~~n~gl~v~v~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~PfLV~~ 257 (393)
+.|....+||++||||++|++|+..+..|+||.|.|....+ ..+.....++...+ .+.+..++||||+|
T Consensus 166 ~~v~~~~~gW~~~dvt~~v~~W~~~~~~n~gl~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~PfLVvf 238 (238)
T PF00688_consen 166 RTVDPSDSGWVSFDVTSAVRRWLRNPEKNLGLELEVEDSNG--RSLAVHSSGFPGDRHQRLKDTDESKRPFLVVF 238 (238)
T ss_dssp EEE---S--EEEEE-HHHHHHHHH---S-EEEEEEEEEEET--TEEEEEE----------SB--SSSS-SEEEEE
T ss_pred eeeccccCCceeEhHHHHHHHHHhCCCCCccEEEEEEECCC--CccCccccccccccccccccCCCCCCCEEEeC
Confidence 99998889999999999999999999999999999987655 33332222221111 12367999999998
No 4
>PHA02913 TGF-beta-like protein; Provisional
Probab=99.95 E-value=1.5e-28 Score=211.11 Aligned_cols=73 Identities=21% Similarity=0.407 Sum_probs=56.1
Q ss_pred CCCCceEEeeeEee-ecCCccceEEcCCccccceeeeccCCCCCCCCCCChHHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy15991 309 NSHSCSIQTLYVNF-RDLEWQDWIIAPDGYGAFYCKQKYNSDPFRVNYENIPEYKRFLEAKRNLQNVPPKPQSLMCWAIH 387 (393)
Q Consensus 309 ~~~~C~r~~LyVdF-~dlGW~dWIIAP~gY~A~yC~G~Cp~pl~~~~~tNHA~~qs~v~~l~~~~~vp~~~~~~pCCvPt 387 (393)
.++.|||++||||| +|||| +|||||+||+||||.|+||+|.. +.+||+..+.+.+ . + |..+++||||||
T Consensus 73 ~~~~CcR~~lyVDF~~dIGW-dWIIAPkgY~AyyC~G~Cp~p~~--~~~~~~~~~ll~~-~-----~-p~~~~~pCCvPt 142 (172)
T PHA02913 73 IDAICCIRDFNIDFKADMGM-KWILKPEGTHANLCIGICSISNH--KKINLMYGTAFKH-H-----M-PDNTIPFCCAPI 142 (172)
T ss_pred CCCCceeEEEEechhhccCc-ceEecCCCeeeeEEeeeCCCCcc--hhhHHHHHHHHHh-c-----C-CCCCCCCCcccc
Confidence 45789999999999 99999 69999999999999999999743 1234444333322 2 2 334667999999
Q ss_pred cCCC
Q psy15991 388 NLED 391 (393)
Q Consensus 388 kl~~ 391 (393)
||++
T Consensus 143 klsp 146 (172)
T PHA02913 143 KMKN 146 (172)
T ss_pred cccc
Confidence 9986
No 5
>PF00019 TGF_beta: Transforming growth factor beta like domain; InterPro: IPR001839 Transforming growth factor-beta (TGF-beta) is a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types. TGF-beta-1 is a peptide of 112 amino acid residues derived by proteolytic cleavage from the C-terminal of a precursor protein []. A number of proteins are known to be related to TGF-beta-1 [, ]. Proteins from the TGF-beta family are only active as homo- or heterodimer; the two chains being linked by a single disulphide bond. From X-ray studies of TGF-beta-2 [], it is known that all the other cysteines are involved in intrachain disulphide bonds. There are four disulphide bonds in the TGF-beta's and in inhibin beta chains, while the other members of this family lack the first bond. The regulatory cytokine TGFbeta exerts tumour-suppressive effects, but also modulates cell invasion and immune regulation []. Misregulation of the TGF-beta signalling pathway can result in tumour development. ; GO: 0008083 growth factor activity; PDB: 2QCQ_B 2QCW_B 2R53_A 2R52_A 1M4U_L 1BMP_A 1LX5_A 1LXI_A 3FUB_B 2V5E_B ....
Probab=99.94 E-value=2.5e-28 Score=199.12 Aligned_cols=75 Identities=32% Similarity=0.646 Sum_probs=66.5
Q ss_pred CCceEEeeeEeeecCCccceEEcCCccccceeeeccCCCCC-CCCCCChHHHHHHHHHHhcCCCCCCCCCCCCccccccC
Q psy15991 311 HSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCKQKYNSDPF-RVNYENIPEYKRFLEAKRNLQNVPPKPQSLMCWAIHNL 389 (393)
Q Consensus 311 ~~C~r~~LyVdF~dlGW~dWIIAP~gY~A~yC~G~Cp~pl~-~~~~tNHA~~qs~v~~l~~~~~vp~~~~~~pCCvPtkl 389 (393)
+.|||++|||||+||||++|||||++|+||||.|.|++++. +.+++|||++|++++... +..+++|||+|+++
T Consensus 2 ~~Cc~~~~~v~F~~lGw~~wIi~P~~~~~~~C~G~C~~~~~~~~~~~~ha~~~~~~~~~~------~~~~~~pCC~P~~~ 75 (105)
T PF00019_consen 2 KRCCRRSLYVNFKDLGWDDWIIAPEGYNANYCSGSCPFPLSNHNNHSNHAILQSLMHSLN------PRSVPQPCCVPTKY 75 (105)
T ss_dssp SBSEEEEEEEECTCTTSTTTEEESSEEEEEEEESBSCSSSSCGCHHHHHHHHHHHHHHHS------TTTSTS-EEEEEEE
T ss_pred CcceeEEEEEEhhhcCCceeEeccCccccccccceecccccccccccccccccccccccc------cccccCCcEeeeee
Confidence 46999999999999999999999999999999999999999 588889999999998773 34567799999998
Q ss_pred CC
Q psy15991 390 ED 391 (393)
Q Consensus 390 ~~ 391 (393)
++
T Consensus 76 ~~ 77 (105)
T PF00019_consen 76 SP 77 (105)
T ss_dssp EE
T ss_pred ce
Confidence 75
No 6
>PF06848 Disaggr_repeat: Disaggregatase related repeat; InterPro: IPR010671 This entry describes several repeats which seem to be specific to the Methanosarcina archaea species and are often found in multiple copies in disaggregatase proteins. Members of this family are also found in single copies in several hypothetical proteins.
Probab=98.22 E-value=1.5e-05 Score=68.86 Aligned_cols=96 Identities=17% Similarity=0.325 Sum_probs=72.9
Q ss_pred eEEEEEccCCCCCCeeEEEEEEEEecccCCCCCCceeEEEEEEEeeC---------------------C----eeEE---
Q psy15991 132 KRIWFDVSEVPPGETIVNSELRIYQMINTTADPWLQFTVSIYQVLVD---------------------G----ELEY--- 183 (393)
Q Consensus 132 ~~~~F~ls~i~~~e~v~~AeLrly~~~~~~~~~~~~~~v~vy~v~~~---------------------~----~~~l--- 183 (393)
-.+.||||+++....|..|.|-||..............|+||+.... + ....
T Consensus 32 dll~FDLS~~~~~~~I~sAtLsLYwyyp~g~~r~~dtviEvYrpa~sW~~~~vTWN~~~~~v~W~naGGDwyD~~gvlqg 111 (182)
T PF06848_consen 32 DLLWFDLSEYPENAEIDSATLSLYWYYPAGTSRPEDTVIEVYRPASSWNESYVTWNKRDKGVAWTNAGGDWYDKNGVLQG 111 (182)
T ss_pred eEEEEeccCCCCCCeEeEEEEEEEEecCCCcCCCCCeEEEEEccccccCcccccccccCCCCcccccCCcchhccCcccc
Confidence 68999999999999999999999977654333456789999987652 0 0001
Q ss_pred ---EeeEEeecC---CCceEEEEcchhhHhhhhCCCCCceeEEEEEecCC
Q psy15991 184 ---VDSVNTTAG---SEGWMLFNVTGPLVSWVAIPHSNKGLYLSVQPREK 227 (393)
Q Consensus 184 ---l~s~~v~~~---~~gW~~fdVT~~v~~W~~~~~~n~gl~v~v~~~~~ 227 (393)
..+.++..+ +..|.++|||+.|+.|+.....|.||.|.....+.
T Consensus 112 ~tpyat~t~~~s~lpdn~y~eldvTeLV~eyvsg~yeNtGfLIK~r~E~~ 161 (182)
T PF06848_consen 112 STPYATITIKGSNLPDNRYYELDVTELVKEYVSGKYENTGFLIKARTENN 161 (182)
T ss_pred CCceEEEEecCCCCCCCceEEccHHHHHHHHhcCCccCceEEEEEecCCC
Confidence 122333322 46899999999999999998899999999987754
No 7
>PF02512 UK: Virulence determinant
Probab=75.64 E-value=1.1 Score=33.80 Aligned_cols=10 Identities=10% Similarity=0.354 Sum_probs=8.5
Q ss_pred CccccccCCC
Q psy15991 382 MCWAIHNLED 391 (393)
Q Consensus 382 pCCvPtkl~~ 391 (393)
|||||.||.-
T Consensus 66 pcccprkmts 75 (96)
T PF02512_consen 66 PCCCPRKMTS 75 (96)
T ss_pred CccCCccccc
Confidence 7999999863
No 8
>PF10330 Stb3: Putative Sin3 binding protein; InterPro: IPR018818 This entry represents Sin3 binding proteins conserved in fungi. Sin3p does not bind DNA directly even though the yeast SIN3 gene functions as a transcriptional repressor. Sin3p is part of a large multiprotein complex []. Stb3 appears to bind directly to ribosomal RNA Processing Elements (RRPE) although there are no obvious domains which would accord with this, implying that Stb3 may be a novel RNA-binding protein [].
Probab=65.06 E-value=4.1 Score=31.73 Aligned_cols=19 Identities=26% Similarity=0.534 Sum_probs=15.3
Q ss_pred EeeecCCccceEEcCCccc
Q psy15991 320 VNFRDLEWQDWIIAPDGYG 338 (393)
Q Consensus 320 VdF~dlGW~dWIIAP~gY~ 338 (393)
|-|++|||..|-....|=.
T Consensus 62 VvFEKvGWGrW~ar~~~~~ 80 (92)
T PF10330_consen 62 VVFEKVGWGRWDARRVGDP 80 (92)
T ss_pred EEEEEeccceeeeeecCCc
Confidence 7899999999987665533
No 9
>PF10430 Ig_Tie2_1: Tie-2 Ig-like domain 1; InterPro: IPR018941 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. Angiogenesis is a physiological process whereby new blood vessels are formed from existing ones. It is essential for tissue repair and regeneration during wound healing but also plays important roles in many pathological processes including tumor growth and metastasis [, ]. Angiogenesis is regulated in part by the receptor protein tyrosine kinase Tie2 and its ligands, the angiopoietins. The angiopoietin-binding site is harbord by the N-terminal two immunoglobulin-like (Ig-like) domains of Tie2 []. The angiopoietin-1 receptor contains the Tie-2 Ig-like domain. This protein is a tyrosine-kinase transmembrane receptor for angiopoietin 1. It probably regulates endothelial cell proliferation, differentiation and guides the proper patterning of endothelial cells during blood vessel formation. Tie2 contains not two but three immunoglobulin domains. They fold together with the three epidermal growth factor domains to form a compact, arrowhead-shaped structure [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0005887 integral to plasma membrane; PDB: 2GY7_B 2GY5_A.
Probab=59.57 E-value=2.4 Score=32.84 Aligned_cols=22 Identities=32% Similarity=0.746 Sum_probs=14.2
Q ss_pred CccceEEcCCccccceeeeccCC
Q psy15991 326 EWQDWIIAPDGYGAFYCKQKYNS 348 (393)
Q Consensus 326 GW~dWIIAP~gY~A~yC~G~Cp~ 348 (393)
-|. |==|-+-+.||||.|.|--
T Consensus 65 vwk-rekas~~~GayyCegk~r~ 86 (96)
T PF10430_consen 65 VWK-REKASEAIGAYYCEGKVRD 86 (96)
T ss_dssp EE--TTT-SS--EEEEEEEEETT
T ss_pred EEE-eeccccccceEEEEEEecC
Confidence 353 6667888999999999853
No 10
>KOG2987|consensus
Probab=46.93 E-value=3.7 Score=38.27 Aligned_cols=21 Identities=38% Similarity=0.994 Sum_probs=17.5
Q ss_pred ecCCccceEEcCCccccceeeeccCC
Q psy15991 323 RDLEWQDWIIAPDGYGAFYCKQKYNS 348 (393)
Q Consensus 323 ~dlGW~dWIIAP~gY~A~yC~G~Cp~ 348 (393)
+|++|. ||| +.||+|.|-|..
T Consensus 62 ~dl~W~-~il----~~AYf~gg~iNh 82 (324)
T KOG2987|consen 62 RDLDWK-WIL----FIAYFFGGFINH 82 (324)
T ss_pred hcccHH-HHH----HHHHHhhhhhch
Confidence 689995 998 689999998844
No 11
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=46.89 E-value=8.3 Score=22.40 Aligned_cols=14 Identities=36% Similarity=0.453 Sum_probs=11.7
Q ss_pred ceEEcCCc-ccccee
Q psy15991 329 DWIIAPDG-YGAFYC 342 (393)
Q Consensus 329 dWIIAP~g-Y~A~yC 342 (393)
.|+|||.+ +..|.|
T Consensus 5 ~~~i~~r~~~v~f~C 19 (24)
T PF07754_consen 5 GRPIAPREQAVPFPC 19 (24)
T ss_pred CCcccCcccCceEeC
Confidence 47899999 888877
No 12
>smart00728 ChW Clostridial hydrophobic, with a conserved W residue, domain.
Probab=31.63 E-value=19 Score=24.45 Aligned_cols=11 Identities=27% Similarity=1.223 Sum_probs=9.0
Q ss_pred eecCCccceEE
Q psy15991 322 FRDLEWQDWII 332 (393)
Q Consensus 322 F~dlGW~dWII 332 (393)
++.+||.+|+=
T Consensus 3 Vqn~GW~~~v~ 13 (46)
T smart00728 3 VQNIGWQNWVS 13 (46)
T ss_pred CccCccccccc
Confidence 57899999974
No 13
>PF13319 DUF4090: Protein of unknown function (DUF4090)
Probab=28.12 E-value=34 Score=25.77 Aligned_cols=16 Identities=13% Similarity=0.605 Sum_probs=13.2
Q ss_pred CCchHHHHHHHHhccC
Q psy15991 73 GSVPKFLMDIYRSLDN 88 (393)
Q Consensus 73 ~~~P~~Ml~LY~~~~~ 88 (393)
.++|..|++||+...+
T Consensus 18 spIP~~~L~LY~~VM~ 33 (84)
T PF13319_consen 18 SPIPPAMLELYNEVMD 33 (84)
T ss_pred CcCCHHHHHHHHHHHH
Confidence 4668899999999873
No 14
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=27.56 E-value=27 Score=32.47 Aligned_cols=28 Identities=18% Similarity=0.371 Sum_probs=25.7
Q ss_pred eeEeeecCCccceEEcC-----------Cccccceeeec
Q psy15991 318 LYVNFRDLEWQDWIIAP-----------DGYGAFYCKQK 345 (393)
Q Consensus 318 LyVdF~dlGW~dWIIAP-----------~gY~A~yC~G~ 345 (393)
=||||=++||..|.+.| +.|+-+.|.|.
T Consensus 23 ~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~GG 61 (237)
T TIGR03849 23 DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPGG 61 (237)
T ss_pred hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCCc
Confidence 48999999999999999 68899999995
No 15
>PF07538 ChW: Clostridial hydrophobic W; InterPro: IPR006637 This hydrophobic repeat is found in a number of Chlostridium proteins. It contains a conserved tryptophan residue.
Probab=24.52 E-value=26 Score=22.29 Aligned_cols=12 Identities=33% Similarity=1.182 Sum_probs=9.0
Q ss_pred eecCCccceEEc
Q psy15991 322 FRDLEWQDWIIA 333 (393)
Q Consensus 322 F~dlGW~dWIIA 333 (393)
.+++||.+|+-.
T Consensus 2 vq~~GW~~~~~~ 13 (36)
T PF07538_consen 2 VQNIGWQDWVSN 13 (36)
T ss_pred cccccCcchhhC
Confidence 468999999743
No 16
>PF05841 Apc15p: Apc15p protein; InterPro: IPR008402 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. Members of this family are components of the anaphase-promoting complex homologous to subunit Apc15/MND2 [].; GO: 0030071 regulation of mitotic metaphase/anaphase transition, 0031145 anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process, 0005680 anaphase-promoting complex
Probab=20.40 E-value=43 Score=27.85 Aligned_cols=14 Identities=36% Similarity=0.935 Sum_probs=10.5
Q ss_pred eecCCccceEEcCCcc
Q psy15991 322 FRDLEWQDWIIAPDGY 337 (393)
Q Consensus 322 F~dlGW~dWIIAP~gY 337 (393)
-+.+||. ||. |.|.
T Consensus 91 Ir~~G~~-wik-PiGv 104 (125)
T PF05841_consen 91 IRNFGYN-WIK-PIGV 104 (125)
T ss_pred HHHhCcc-cee-CCCc
Confidence 4578995 998 7774
No 17
>PF05093 CIAPIN1: Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis; InterPro: IPR007785 Anamorsin, subsequently named CIAPIN1 for cytokine-induced anti-apoptosis inhibitor 1, in humans is the homologue of yeast Dre2, a conserved soluble eukaryotic Fe-S cluster protein, that functions in cytosolic Fe-S protein biogenesis. It is found in both the cytoplasm and in the mitochondrial intermembrane space (IMS) []. CIAPIN1 is found to be up-regulated in hepatocellular cancer, is considered to be a downstream effector of the receptor tyrosine kinase-Ras signalling pathway, and is essential in mouse definitive haematopoiesis []. In addition, it has also anti-apoptotic effects in the cell. It is involved in negative control of cell death upon cytokine withdrawal and promotes development of hematopoietic cells [].
Probab=20.36 E-value=42 Score=26.82 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=8.5
Q ss_pred ccceeeeccCC
Q psy15991 338 GAFYCKQKYNS 348 (393)
Q Consensus 338 ~A~yC~G~Cp~ 348 (393)
+||.|.| |||
T Consensus 77 DAFRCa~-CPY 86 (100)
T PF05093_consen 77 DAFRCAG-CPY 86 (100)
T ss_pred ccceecC-CCc
Confidence 6999975 998
No 18
>PF13313 DUF4082: Domain of unknown function (DUF4082)
Probab=20.08 E-value=2.4e+02 Score=24.28 Aligned_cols=51 Identities=16% Similarity=0.282 Sum_probs=35.3
Q ss_pred EEEEEEEecccCCCCCCceeEEEEEEEeeCCeeEEEeeEEee-cCCCceEEEEcchhhHh
Q psy15991 149 NSELRIYQMINTTADPWLQFTVSIYQVLVDGELEYVDSVNTT-AGSEGWMLFNVTGPLVS 207 (393)
Q Consensus 149 ~AeLrly~~~~~~~~~~~~~~v~vy~v~~~~~~~ll~s~~v~-~~~~gW~~fdVT~~v~~ 207 (393)
---||+|+.... .....+.|+.. .-.+|.+..+. ...+||++.+....|.-
T Consensus 33 vtgvrfYk~~~n----tgthtgsLWsa----~G~lLAt~tft~etasGWQt~~f~~PV~v 84 (149)
T PF13313_consen 33 VTGVRFYKGAGN----TGTHTGSLWSA----DGTLLATATFTNETASGWQTVTFSTPVAV 84 (149)
T ss_pred EEEEEEEeCCCC----CCceEEEEECC----CCCEEEEEEEcCCCCCceEEEeccCCeEE
Confidence 346899998553 23457778752 34567766655 36789999999988875
Done!