Query psy15991
Match_columns 393
No_of_seqs 169 out of 1099
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 18:10:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15991.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15991hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rjr_A Transforming growth fac 100.0 3E-63 1E-67 483.3 16.2 319 25-391 3-336 (363)
2 1zkz_A Growth/differentiation 100.0 9.1E-36 3.1E-40 242.3 6.1 76 310-391 5-81 (110)
3 3evs_B Growth/differentiation 100.0 8E-36 2.7E-40 245.1 4.7 77 309-391 12-89 (117)
4 2r52_A BMP-6, bone morphogenet 100.0 9.2E-36 3.2E-40 252.3 5.0 77 309-391 38-115 (143)
5 2h62_A BMP-2, BMP-2A, bone mor 100.0 5.2E-36 1.8E-40 245.0 3.3 76 309-391 10-86 (114)
6 2qcq_A Bone morphogenetic prot 100.0 2.1E-35 7.3E-40 240.1 5.1 77 310-391 5-82 (110)
7 1lxi_A Bone morphogenetic prot 100.0 2.2E-35 7.4E-40 249.1 3.7 77 309-391 34-111 (139)
8 2arp_A Inhibin beta A chain; c 100.0 3.9E-34 1.3E-38 235.2 3.6 83 308-391 6-88 (116)
9 2tgi_A Transforming growth fac 100.0 1.3E-32 4.3E-37 224.3 3.4 74 309-391 11-85 (112)
10 3hh2_A Growth/differentiation 100.0 7.1E-30 2.4E-34 207.0 3.8 70 310-391 12-81 (109)
11 2ask_A Artemin; glial cell der 99.9 2.5E-26 8.5E-31 185.6 4.2 74 309-391 12-88 (113)
12 1agq_A GDNF, glial cell-derive 99.9 4E-25 1.4E-29 182.1 5.2 72 308-390 37-109 (135)
13 2b5b_A Defensin; antibiotic; N 50.4 4.5 0.00016 23.8 0.6 9 382-390 28-36 (36)
14 1jmt_B Splicing factor U2AF 65 38.8 8.9 0.0003 22.3 0.6 11 326-339 7-17 (28)
15 4gyx_A Type III collagen fragm 25.7 28 0.00096 19.8 1.2 10 376-385 20-29 (31)
No 1
>3rjr_A Transforming growth factor beta-1; TGF beta, activation, integrin, cytokine; HET: NAG; 3.05A {Sus scrofa}
Probab=100.00 E-value=3e-63 Score=483.27 Aligned_cols=319 Identities=20% Similarity=0.336 Sum_probs=214.4
Q ss_pred ccccCccch-hhccccChHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCchHHHHHHHHhccCCCCC-Cc-cCcC-CC
Q psy15991 25 LYVDNGVDQ-IIQRTLSTKEKQDVSHDLLNLLGLPLRPKHLFSNATSIEGSVPKFLMDIYRSLDNPRRT-TR-SEFN-LG 100 (393)
Q Consensus 25 ~~~~~~~~~-~~~~~~~~~~~~~~~~~iL~~LgL~~~P~~~~~~~~~~~~~~P~~Ml~LY~~~~~~~~~-~~-~~~~-~~ 100 (393)
++++++.|. .+.+ ..+++|+++||++|||+++|++.. ..+..+|+|||+||+++.+.... .. .+.+ ..
T Consensus 3 ~~~~~~~d~~~~k~----~~ieai~~~iLsklgL~~~P~~~~----~~~~~vP~~ml~LYnst~~l~~~~~~~~~~~~e~ 74 (363)
T 3rjr_A 3 LSTSKTIDMELVKR----KRIEAIRGQILSKLRLASPPSQGD----VPPGPLPEAVLALYNSTRDRVAGESVEPEPEPEA 74 (363)
T ss_dssp CHHHHHHHHHHHHH----HHHHHHHHHHHHHHTCSSCCCTTS----SCCSCCCHHHHHHHHHHHSCCEEC-------CCC
T ss_pred cccccCCCHHHHHH----HHHHHHHHHHHHHhCCCCCCCCCC----CCCCCCCHHHHHHHHHHHHHhccccccCcCCccc
Confidence 455666666 3322 235999999999999999999841 25678999999999998742111 00 0100 11
Q ss_pred CCCccccccCCcccCccccCCccccccccCCeEEEEEccCCCC----CCeeEEEEEEEEecccCCCCCCceeEEEEEEEe
Q psy15991 101 GKDLQSIDESDMIMGFSSRNHHVSNVRHEHGKRIWFDVSEVPP----GETIVNSELRIYQMINTTADPWLQFTVSIYQVL 176 (393)
Q Consensus 101 ~~d~~~i~~ad~Irsf~~~~~~~~~~~~~~~~~~~F~ls~i~~----~e~v~~AeLrly~~~~~~~~~~~~~~v~vy~v~ 176 (393)
++-.+.+...|||++|.+.++.... .. +...|+||+|+|+. +|.|++||||||+... +...+|+||+..
T Consensus 75 ~y~akev~~~~~~~~~~e~~~~~~~-~~-~~~~f~FnlS~ip~~~~~~e~l~~AELRlyk~~~-----~~~~rI~vYq~~ 147 (363)
T 3rjr_A 75 DYYAKEVTRVLMVESGNQIYDKFKG-TP-HSLYMLFNTSELREAVPEPVLLSRAELRLLRLKL-----KVEQHVELYQKY 147 (363)
T ss_dssp CSSCEEEEEEECCCSSTTTTTTTCC-CT-TEEEEEECHHHHHHHSSSTTTCCEEEEEEEBCCT-----TCCEEEEEEEEC
T ss_pred ceeceeeeeeccccccccccccccC-Cc-ceEEEEEECccCcccCCCcceeeeeEEEeEecCC-----CceEEEEEEecC
Confidence 1112234445788888654322211 12 23799999999965 6789999999998632 356899999965
Q ss_pred eCCeeEEEeeEEeecC-CCceEEEEcchhhHhhhhCCCCCceeEEEEEecCC-CCccccccccccc-ccccCCC---CCC
Q psy15991 177 VDGELEYVDSVNTTAG-SEGWMLFNVTGPLVSWVAIPHSNKGLYLSVQPREK-PIHEIRTEDIGIV-ASKVMHL---EEK 250 (393)
Q Consensus 177 ~~~~~~ll~s~~v~~~-~~gW~~fdVT~~v~~W~~~~~~n~gl~v~v~~~~~-~~~~v~~~~~~~~-~~~~~~~---~~~ 250 (393)
.....++|+++.|... .+||++||||.||+.|+.+++.|+||+|.|.+... .+..+.+...|.. ..+++.. ...
T Consensus 148 ~~~~~rlLdsr~v~~~~~~gW~sFDVt~aV~~Wl~~~~~n~GL~v~v~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~ 227 (363)
T 3rjr_A 148 SQDSWRYLSNRLLAPSDSPEWLSFDVTGVVRQWLTRREAIEGFRLSAHCSCDSKDNTLHVEINGFNSGRRGDLATIHGMN 227 (363)
T ss_dssp SSSCEEEEEEEEECCCSSCCEEEEECHHHHHHHHHCCCSCEEEEEEECEEEEEETTEEEEEECC-------CSBCCSSSS
T ss_pred CCCceEEEEEEEecCCCCCCEEEEECHHHHHHHHhCCCcCcceEEEEeecCCCCCcccceeeccccccccCccccccccC
Confidence 4456789999999887 78999999999999999999999999999874311 0122222223332 1111111 579
Q ss_pred ccEEEEEEcCCCCCCCCCCCcccccccccccccccccccCCCCCCCCCCCcchhhcccCCCCceEEeeeEeee-cCCccc
Q psy15991 251 QPFMVAFFKSAHGGITVRPRSRRIRETTKSRKRKSMTETSNYRNPYTGFSDSMKEAAYNSHSCSIQTLYVNFR-DLEWQD 329 (393)
Q Consensus 251 ~PfLV~~~~~~~~~~~~~~r~~r~~~~~~rR~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~C~r~~LyVdF~-dlGW~d 329 (393)
+||||+|+.+.. +. . +.+++|+++.... ..| .......|||++|||||+ |||| |
T Consensus 228 ~PfLv~~~~~~~-------~~--~-~~~~~r~kr~~~~--~~c------------~~~~~~~Ccr~~~~VdF~~dlGW-~ 282 (363)
T 3rjr_A 228 RPFLLLMATPLE-------RA--Q-HLHSSRHRRALDT--NYC------------FSSTEKNCCVRQLYIDFRKDLGW-K 282 (363)
T ss_dssp CSEEEEEECCHH-------HH--H-C--------CBCT--TTT------------TTSCCCSSEEECCEEEHHHHHCC-C
T ss_pred CcEEEEEecccc-------cc--c-ccccccccccccc--ccc------------cccccCCccccceEEEeecccCc-c
Confidence 999999996531 00 0 0011121111100 001 112356899999999996 9999 6
Q ss_pred eEEcCCccccceeeeccCCCCCCCCCCChHHHHHHHHHHhcCCCCCCCCCCCCccccccCCC
Q psy15991 330 WIIAPDGYGAFYCKQKYNSDPFRVNYENIPEYKRFLEAKRNLQNVPPKPQSLMCWAIHNLED 391 (393)
Q Consensus 330 WIIAP~gY~A~yC~G~Cp~pl~~~~~tNHA~~qs~v~~l~~~~~vp~~~~~~pCCvPtkl~~ 391 (393)
|||||+||+||||.|+||+|+. ++||||++|++++.+. |..++.||||||+|++
T Consensus 283 WIiaP~gy~a~yC~G~C~~~~~--~~t~ha~v~~l~~~~~------p~~~~~pCCvPt~l~~ 336 (363)
T 3rjr_A 283 WIHEPKGYHANFCLGPCPYIWS--LDTQYSKVLALYNQHN------PGASAAPCCVPQALEP 336 (363)
T ss_dssp SEEECSEEECCEEESCCCCTTT--SCSCCHHHHHHTSSCC------SSSSSSCCEEECSEEE
T ss_pred eecCCCcccceEeeeeCCCCcc--CCCchHHHHHHHHhcC------CCcCCCCccccccccc
Confidence 9999999999999999999997 4899999999987432 3456789999999974
No 2
>1zkz_A Growth/differentiation factor 2; glycoprotein, growth factor, cytokine, hormone-growth factor; 2.33A {Homo sapiens}
Probab=100.00 E-value=9.1e-36 Score=242.26 Aligned_cols=76 Identities=28% Similarity=0.482 Sum_probs=69.4
Q ss_pred CCCceEEeeeEeeecCCccceEEcCCccccceeeeccCCCCC-CCCCCChHHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy15991 310 SHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCKQKYNSDPF-RVNYENIPEYKRFLEAKRNLQNVPPKPQSLMCWAIHN 388 (393)
Q Consensus 310 ~~~C~r~~LyVdF~dlGW~dWIIAP~gY~A~yC~G~Cp~pl~-~~~~tNHA~~qs~v~~l~~~~~vp~~~~~~pCCvPtk 388 (393)
.+.|||++|||||+||||+||||||+||+||||.|+||+|+. ++|+||||++|++++.+. |..+++||||||+
T Consensus 5 ~~~C~r~~l~VdF~dlGW~~WIiaP~gy~a~yC~G~C~~~~~~~~~~tnHaivq~l~~~~~------~~~~~~pCCvPt~ 78 (110)
T 1zkz_A 5 GSHCQKTSLRVNFEDIGWDSWIIAPKEYEAYECKGGCFFPLADDVTPTKHAIVQTLVHLKF------PTKVGKACCVPTK 78 (110)
T ss_dssp CCBSEEEEEEEETTTTTCTTTEEECSEEEEEEEESBCCSSCCTTSCCCHHHHHHHHHHHHS------TTTSCCCCEEEEE
T ss_pred CCCcEEEEEEEEeeccCCcceEECCCceEeEEeEeECCCCcccccCCCchHHHHHHHHhcC------CCCCCCCccccee
Confidence 467999999999999999999999999999999999999999 699999999999999774 2346779999999
Q ss_pred CCC
Q psy15991 389 LED 391 (393)
Q Consensus 389 l~~ 391 (393)
|++
T Consensus 79 l~~ 81 (110)
T 1zkz_A 79 LSP 81 (110)
T ss_dssp EEE
T ss_pred Ecc
Confidence 975
No 3
>3evs_B Growth/differentiation factor 5; ligand-receptor complex, cystin-knot ligand, three-finger to (receptor); 2.10A {Homo sapiens} SCOP: g.17.1.0 PDB: 1waq_A 3qb4_A 2bhk_A
Probab=100.00 E-value=8e-36 Score=245.07 Aligned_cols=77 Identities=29% Similarity=0.526 Sum_probs=69.2
Q ss_pred CCCCceEEeeeEeeecCCccceEEcCCccccceeeeccCCCCC-CCCCCChHHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy15991 309 NSHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCKQKYNSDPF-RVNYENIPEYKRFLEAKRNLQNVPPKPQSLMCWAIH 387 (393)
Q Consensus 309 ~~~~C~r~~LyVdF~dlGW~dWIIAP~gY~A~yC~G~Cp~pl~-~~~~tNHA~~qs~v~~l~~~~~vp~~~~~~pCCvPt 387 (393)
..+.|||++|||||+||||+||||||+||+||||.|+||+|+. ++++||||++|++++.+. |..++.||||||
T Consensus 12 ~~~~C~r~~l~V~F~dlGW~~WIiaP~gy~a~yC~G~C~~p~~~~~~~tnHa~iq~l~~~~~------p~~~~~pCCvPt 85 (117)
T 3evs_B 12 LKARCSRKALHVNFKDMGWDDWIIAPLEYEAFHCEGLCEFPLRSHLEPTNHAVIQTLMNSMD------PESTPPTCCVPT 85 (117)
T ss_dssp --CBSEEECCEEETGGGTGGGTEEECSEEECCEEESBCCSSCCGGGCCCHHHHHHHHHHHHC------TTTCCCCCEEEE
T ss_pred CCCCcEEEEEEEEHHHCCCcceeeCCCcccceeeeeECCCCcccccCCchHHHHHHHHHhcC------CCCCCCCCEece
Confidence 3567999999999999999999999999999999999999999 699999999999999874 344678999999
Q ss_pred cCCC
Q psy15991 388 NLED 391 (393)
Q Consensus 388 kl~~ 391 (393)
+|++
T Consensus 86 ~l~~ 89 (117)
T 3evs_B 86 RLSP 89 (117)
T ss_dssp EEEE
T ss_pred eecc
Confidence 9975
No 4
>2r52_A BMP-6, bone morphogenetic protein 6; TGF-beta ligand, chondrogenesis, cleavage on PAIR of basic residues, cytokine, developmental protein; 2.50A {Homo sapiens}
Probab=100.00 E-value=9.2e-36 Score=252.30 Aligned_cols=77 Identities=34% Similarity=0.612 Sum_probs=69.4
Q ss_pred CCCCceEEeeeEeeecCCccceEEcCCccccceeeeccCCCCC-CCCCCChHHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy15991 309 NSHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCKQKYNSDPF-RVNYENIPEYKRFLEAKRNLQNVPPKPQSLMCWAIH 387 (393)
Q Consensus 309 ~~~~C~r~~LyVdF~dlGW~dWIIAP~gY~A~yC~G~Cp~pl~-~~~~tNHA~~qs~v~~l~~~~~vp~~~~~~pCCvPt 387 (393)
....|||++|||||+||||+||||||+||+||||.|+||||+. ++|+||||++|+|++.+. |..++.||||||
T Consensus 38 ~~~~C~r~~l~VdF~dlGW~dWIiaP~gy~A~yC~G~C~~pl~~~~~~tnHaivq~l~~~~~------p~~~~~pCCvPt 111 (143)
T 2r52_A 38 LKTACRKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMN------PEYVPKPCCAPT 111 (143)
T ss_dssp -CCBSEEECCEEETTTTTCGGGEEECSEEECCEEESBCCSSCCTTTTBCHHHHHHHHHHHTC------TTTSCCCCEEEE
T ss_pred CCCCceEEEEEEEHhHCCCceeEEcCCceeeeeeeeECCCccccccCCCchHHHHHHHHhcC------CCCCCCCCCcce
Confidence 4567999999999999999999999999999999999999998 699999999999999753 335677999999
Q ss_pred cCCC
Q psy15991 388 NLED 391 (393)
Q Consensus 388 kl~~ 391 (393)
+|++
T Consensus 112 ~l~~ 115 (143)
T 2r52_A 112 KLNA 115 (143)
T ss_dssp EEEE
T ss_pred eecc
Confidence 9975
No 5
>2h62_A BMP-2, BMP-2A, bone morphogenetic protein 2; TGF-beta superfamily, ligand-receptor complex, hormone/growth factor complex; 1.85A {Homo sapiens} SCOP: g.17.1.2 PDB: 2goo_A* 1rew_A 3bmp_A 2qj9_B 1es7_A 2qja_A 2qjb_A 2h64_A 3bk3_A 1reu_A
Probab=100.00 E-value=5.2e-36 Score=245.03 Aligned_cols=76 Identities=30% Similarity=0.609 Sum_probs=68.6
Q ss_pred CCCCceEEeeeEeeecCCccceEEcCCccccceeeeccCCCCC-CCCCCChHHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy15991 309 NSHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCKQKYNSDPF-RVNYENIPEYKRFLEAKRNLQNVPPKPQSLMCWAIH 387 (393)
Q Consensus 309 ~~~~C~r~~LyVdF~dlGW~dWIIAP~gY~A~yC~G~Cp~pl~-~~~~tNHA~~qs~v~~l~~~~~vp~~~~~~pCCvPt 387 (393)
....|||++|||||+||||+||||||+||+||||.|+||||+. ++++||||++|++++.+. | .+++||||||
T Consensus 10 ~~~~C~r~~l~VdF~dlGW~~WIiaP~gy~a~yC~G~C~~p~~~~~~~tnHaivq~l~~~~~------~-~~~~pCCvPt 82 (114)
T 2h62_A 10 LKSSCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVN------S-KIPKACCVPT 82 (114)
T ss_dssp -CCBSEEECCEEEHHHHTCTTTEEECSEEECCEEECBCCSSCCTTSEECHHHHHHHHHHHHC------T-TSCCCCEEEE
T ss_pred CCCCceeEEEEEEeeecCCcccEEcCCceEeEeeeeECCCCcccccCCchHHHHHHHHHhcC------C-CCCCCcccce
Confidence 3467999999999999999999999999999999999999998 699999999999999763 1 3667999999
Q ss_pred cCCC
Q psy15991 388 NLED 391 (393)
Q Consensus 388 kl~~ 391 (393)
+|++
T Consensus 83 ~l~~ 86 (114)
T 2h62_A 83 ELSA 86 (114)
T ss_dssp EEEE
T ss_pred eecc
Confidence 9975
No 6
>2qcq_A Bone morphogenetic protein 3; BMP, TGF-beta, signaling protein; 2.21A {Homo sapiens}
Probab=100.00 E-value=2.1e-35 Score=240.10 Aligned_cols=77 Identities=21% Similarity=0.480 Sum_probs=69.0
Q ss_pred CCCceEEeeeEeeecCCccceEEcCCccccceeeeccCCCCC-CCCCCChHHHHHHHHHHhcCCCCCCCCCCCCcccccc
Q psy15991 310 SHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCKQKYNSDPF-RVNYENIPEYKRFLEAKRNLQNVPPKPQSLMCWAIHN 388 (393)
Q Consensus 310 ~~~C~r~~LyVdF~dlGW~dWIIAP~gY~A~yC~G~Cp~pl~-~~~~tNHA~~qs~v~~l~~~~~vp~~~~~~pCCvPtk 388 (393)
.+.|||++|||||+||||+||||||+||+||||.|+||||+. ++++||||++|++++.+... +.++.||||||+
T Consensus 5 ~~~C~r~~l~VdF~dlGW~~WIiaP~~y~a~yC~G~C~~pl~~~~~~tnHa~vq~l~~~~~~~-----~~~~~pCCvPt~ 79 (110)
T 2qcq_A 5 PRNCARRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQSIVRAVGVV-----PGIPEPCCVPEK 79 (110)
T ss_dssp CSBSEEECCEEETTTTTCTTTEEECSEEECCEEECBCCSSCCGGGCCCHHHHHHHHHHHTCCS-----TTCCCCCEEECS
T ss_pred CCCcEEEEEEEEeeccCCcceEECCCceEeEEeEeECCCCcccccCCChhHHHHHHHHhccCC-----CCCCCCcCCCee
Confidence 466999999999999999999999999999999999999999 69999999999999976422 246779999999
Q ss_pred CCC
Q psy15991 389 LED 391 (393)
Q Consensus 389 l~~ 391 (393)
|++
T Consensus 80 l~~ 82 (110)
T 2qcq_A 80 MSS 82 (110)
T ss_dssp EEE
T ss_pred Ecc
Confidence 975
No 7
>1lxi_A Bone morphogenetic protein 7; cystine-knot growth factor, hormone-growth factor complex; HET: NAG; 2.00A {Homo sapiens} SCOP: g.17.1.2 PDB: 1lx5_A* 1bmp_A* 1m4u_L* 2qcw_A 2r53_A
Probab=100.00 E-value=2.2e-35 Score=249.08 Aligned_cols=77 Identities=35% Similarity=0.686 Sum_probs=68.9
Q ss_pred CCCCceEEeeeEeeecCCccceEEcCCccccceeeeccCCCCC-CCCCCChHHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy15991 309 NSHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCKQKYNSDPF-RVNYENIPEYKRFLEAKRNLQNVPPKPQSLMCWAIH 387 (393)
Q Consensus 309 ~~~~C~r~~LyVdF~dlGW~dWIIAP~gY~A~yC~G~Cp~pl~-~~~~tNHA~~qs~v~~l~~~~~vp~~~~~~pCCvPt 387 (393)
....|||++|||||+||||+||||||+||+||||.|+||||++ ++|+||||++|+|++.+. |..++.||||||
T Consensus 34 ~~~~C~r~~l~VdF~dlGW~~WIiaP~gy~a~yC~G~C~~pl~~~~~~tnHaivq~l~~~~~------p~~~~~pCCvPt 107 (139)
T 1lxi_A 34 QRQACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMNATNHAIVQTLVHFIN------PETVPKPCCAPT 107 (139)
T ss_dssp --CBSEEECCEEEHHHHTCTTTEEECSEEECCEEESBCCSSCCGGGCCCHHHHHHHHHHHHC------TTTCCCCCEEEE
T ss_pred CCCcceeEEEEEEhhhCCCceeEECCCceeeeeeeeECCCCcccccCCCchHHHHHHHHhcC------CCCCCCCCCcCe
Confidence 4567999999999999999999999999999999999999999 799999999999999764 234677999999
Q ss_pred cCCC
Q psy15991 388 NLED 391 (393)
Q Consensus 388 kl~~ 391 (393)
+|++
T Consensus 108 ~l~~ 111 (139)
T 1lxi_A 108 QLNA 111 (139)
T ss_dssp EEEE
T ss_pred eecc
Confidence 9974
No 8
>2arp_A Inhibin beta A chain; cystine knot, disulfide rich, EGF domain, kazal domain, PROT complex, hormone-growth factor complex; HET: 1PG; 2.00A {Homo sapiens} SCOP: g.17.1.2 PDB: 1nyu_B 1nys_B 1s4y_B* 2arv_A* 2b0u_A 2p6a_A 3b4v_A*
Probab=99.98 E-value=3.9e-34 Score=235.19 Aligned_cols=83 Identities=25% Similarity=0.489 Sum_probs=63.4
Q ss_pred cCCCCceEEeeeEeeecCCccceEEcCCccccceeeeccCCCCCCCCCCChHHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy15991 308 YNSHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCKQKYNSDPFRVNYENIPEYKRFLEAKRNLQNVPPKPQSLMCWAIH 387 (393)
Q Consensus 308 ~~~~~C~r~~LyVdF~dlGW~dWIIAP~gY~A~yC~G~Cp~pl~~~~~tNHA~~qs~v~~l~~~~~vp~~~~~~pCCvPt 387 (393)
...+.|||++|||||+||||+||||||+||+||||.|+||||+..+|+||||++|++++..... ...|..+++||||||
T Consensus 6 ~~~~~C~r~~l~VdF~dlGW~~WIiaP~~y~a~yC~G~C~~p~~~~~~tn~a~~~~~i~~~~~~-~~~p~~~~~pCCvPt 84 (116)
T 2arp_A 6 GKVNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSGSSLSFHSTVINHYRMR-GHSPFANLKSCCVPT 84 (116)
T ss_dssp C--CCSEEECCEEEHHHHTCTTTEEECSEEECCEEESCCCC---------CCHHHHHHHHTTST-TCSSCCCCCCCEEEE
T ss_pred CCCCCceeEEEEEEhhhcCCcccEECCCceEeEEEeeeCCCCccccCCcchHHHHHHHHhhhcc-ccCCCCCCCCccccc
Confidence 3457899999999999999999999999999999999999999966999999999999875333 333456889999999
Q ss_pred cCCC
Q psy15991 388 NLED 391 (393)
Q Consensus 388 kl~~ 391 (393)
+|++
T Consensus 85 ~l~~ 88 (116)
T 2arp_A 85 KLRP 88 (116)
T ss_dssp EEEE
T ss_pred cCcc
Confidence 9975
No 9
>2tgi_A Transforming growth factor ,beta 2; 1.80A {Homo sapiens} SCOP: g.17.1.2 PDB: 1tfg_A 1tgj_A 1ktz_A 1tgk_A 2pjy_A 3eo1_C 1kla_A 1klc_A 1kld_A 3kfd_A
Probab=99.97 E-value=1.3e-32 Score=224.28 Aligned_cols=74 Identities=24% Similarity=0.551 Sum_probs=65.4
Q ss_pred CCCCceEEeeeEeee-cCCccceEEcCCccccceeeeccCCCCCCCCCCChHHHHHHHHHHhcCCCCCCCCCCCCccccc
Q psy15991 309 NSHSCSIQTLYVNFR-DLEWQDWIIAPDGYGAFYCKQKYNSDPFRVNYENIPEYKRFLEAKRNLQNVPPKPQSLMCWAIH 387 (393)
Q Consensus 309 ~~~~C~r~~LyVdF~-dlGW~dWIIAP~gY~A~yC~G~Cp~pl~~~~~tNHA~~qs~v~~l~~~~~vp~~~~~~pCCvPt 387 (393)
....|||++|||||+ |||| +|||||+||+||||.|+||||+.. +||||++|++++.+. |..+++||||||
T Consensus 11 ~~~~C~r~~l~VdF~~dlGW-~WIiaP~~y~A~yC~G~C~~p~~~--~tnHa~vq~l~~~~~------p~~~~~pCCvPt 81 (112)
T 2tgi_A 11 VQDNCCLRPLYIDFKRDLGW-KWIHEPKGYNANFCAGACPYLWSS--DTQHSRVLSLYNTIN------PEASASPCCVSQ 81 (112)
T ss_dssp CCSBSEEECCEEEHHHHHCC-TTEEECSEEECCEEECBCCTTSSB--CSHHHHHHHHHHHHC------GGGCCCCCEEEC
T ss_pred CCCCceeEEEEEEhhhhcCC-ceEcCcCcEEEEEeeeECcCCccc--cchhhHHHHHHHhcC------CCCCCCCceece
Confidence 457899999999998 9999 599999999999999999999984 699999999999764 234567999999
Q ss_pred cCCC
Q psy15991 388 NLED 391 (393)
Q Consensus 388 kl~~ 391 (393)
+|++
T Consensus 82 ~l~~ 85 (112)
T 2tgi_A 82 DLEP 85 (112)
T ss_dssp SEEE
T ss_pred eecc
Confidence 9975
No 10
>3hh2_A Growth/differentiation factor 8; protein-protein complex, TB domain, cystine knot motif, TGF- fold, disulfide linked dimer, CLE PAIR of basic residues, cytokine; HET: CIT; 2.15A {Mus musculus} SCOP: g.17.1.0 PDB: 3sek_B*
Probab=99.95 E-value=7.1e-30 Score=207.02 Aligned_cols=70 Identities=24% Similarity=0.501 Sum_probs=59.2
Q ss_pred CCCceEEeeeEeeecCCccceEEcCCccccceeeeccCCCCCCCCCCChHHHHHHHHHHhcCCCCCCCCCCCCccccccC
Q psy15991 310 SHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCKQKYNSDPFRVNYENIPEYKRFLEAKRNLQNVPPKPQSLMCWAIHNL 389 (393)
Q Consensus 310 ~~~C~r~~LyVdF~dlGW~dWIIAP~gY~A~yC~G~Cp~pl~~~~~tNHA~~qs~v~~l~~~~~vp~~~~~~pCCvPtkl 389 (393)
+..|||++|||||+|||| ||||||+||+||||.|+||+|+.. .+||++ |++.+. |..+++||||||||
T Consensus 12 ~~~C~r~~l~V~F~dlGW-dWIiaP~~y~a~yC~G~C~~p~~~--~~~h~~---l~~~~~------p~~~~~pCCvPt~l 79 (109)
T 3hh2_A 12 ESRCCRYPLTVDFEAFGW-DWIIAPKRYKANYCSGECEFVFLQ--KYPHTH---LVHQAN------PRGSAGPCCTPTKM 79 (109)
T ss_dssp CCBSEEECCEEEHHHHTC-TTEEECSEEECCEEECBCCTTTTC--CCHHHH---HHHHHC------CTTCCCCCEEEEEE
T ss_pred CCCcEEEEEEEeHHHcCC-CeEeCCCcccceeecccCCCcccc--cCchhh---hhhhcC------cccCCCceEeeeee
Confidence 467999999999999999 699999999999999999999863 368874 666543 34567899999999
Q ss_pred CC
Q psy15991 390 ED 391 (393)
Q Consensus 390 ~~ 391 (393)
++
T Consensus 80 ~~ 81 (109)
T 3hh2_A 80 SP 81 (109)
T ss_dssp EE
T ss_pred cc
Confidence 75
No 11
>2ask_A Artemin; glial cell derived family ligand, neurotrphoic growth factor, sulfates, hormone/growth factor complex; 1.55A {Homo sapiens} PDB: 2gyz_A 2gyr_A 2gh0_C*
Probab=99.92 E-value=2.5e-26 Score=185.57 Aligned_cols=74 Identities=18% Similarity=0.240 Sum_probs=60.6
Q ss_pred CCCCceEEeeeEeeecCCccceEEcCCccccceeeeccCCCCCCCCCCChHHH-HHHHHHHhcCCCCCC--CCCCCCccc
Q psy15991 309 NSHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCKQKYNSDPFRVNYENIPEY-KRFLEAKRNLQNVPP--KPQSLMCWA 385 (393)
Q Consensus 309 ~~~~C~r~~LyVdF~dlGW~dWIIAP~gY~A~yC~G~Cp~pl~~~~~tNHA~~-qs~v~~l~~~~~vp~--~~~~~pCCv 385 (393)
..+.|++++|||||+||||+ | |||++|+||||+|+|||+ +||||++ |+++++... ..|| ..+++||||
T Consensus 12 ~~~~C~l~~l~V~f~dLGw~-~-~ap~~y~a~yC~G~C~~~-----~tnHa~vl~~l~~~~~~--~~p~~~~~~~~PCCv 82 (113)
T 2ask_A 12 GARGCRLRSQLVPVRALGLG-H-RSDELVRFRFCSGSCRRA-----RSPHDLSLASLLGAGAL--RPPPGSRPVSQPCCR 82 (113)
T ss_dssp -CCBSEEEEEEEEGGGGSSS-C-CCCCEEEEEEEECBCGGG-----CCHHHHHHHHHHHHTCS--CCCSSSCCCSSCEEE
T ss_pred CCCCceeEEEEEEHHHcCCC-c-cCcCeeeeeeeeeeCCCC-----CCcHHHHHHHHHHhccc--cCcccCCCCCCCCcc
Confidence 35689999999999999996 7 469999999999999994 6899988 999986531 1121 568899999
Q ss_pred cccCCC
Q psy15991 386 IHNLED 391 (393)
Q Consensus 386 Ptkl~~ 391 (393)
||+|++
T Consensus 83 Pt~~~~ 88 (113)
T 2ask_A 83 PTRYEA 88 (113)
T ss_dssp EEEEEE
T ss_pred Cceecc
Confidence 999974
No 12
>1agq_A GDNF, glial cell-derived neurotrophic factor; growth factor, cystine knot; 1.90A {Rattus norvegicus} SCOP: g.17.1.2 PDB: 3fub_B* 2v5e_B*
Probab=99.91 E-value=4e-25 Score=182.12 Aligned_cols=72 Identities=11% Similarity=0.226 Sum_probs=57.8
Q ss_pred cCCCCceEEeeeEeeecCCccceEEcCCccccceeeeccCCCCCCCCCCChHHH-HHHHHHHhcCCCCCCCCCCCCcccc
Q psy15991 308 YNSHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCKQKYNSDPFRVNYENIPEY-KRFLEAKRNLQNVPPKPQSLMCWAI 386 (393)
Q Consensus 308 ~~~~~C~r~~LyVdF~dlGW~dWIIAP~gY~A~yC~G~Cp~pl~~~~~tNHA~~-qs~v~~l~~~~~vp~~~~~~pCCvP 386 (393)
.....|++++|||||+||||+ | ++|++|+||||.|+|||| +||||++ |++++.. .+.|..++.|||||
T Consensus 37 ~~~~~C~l~~L~V~f~dLGwg-~-~spe~y~a~yC~G~C~~~-----~TNHAivL~~L~~~~----~l~p~~vp~PCCvP 105 (135)
T 1agq_A 37 GKNRGCVLTAIHLNVTDLGLG-Y-ETKEELIFRYCSGSCEAA-----ETMYDKILKNLSRSR----RLTSDKVGQACCRP 105 (135)
T ss_dssp --CTTSEEEEEEEEGGGGCSS-C-CCCCEEEEEEEESCCCSC-----CSHHHHHHHHHHHHC----------CCCCCEEE
T ss_pred CCCCCceeEEEEEEHHHhCCC-c-cCcCeeEeeeeeeeCCCC-----CccHHHHHHHHHhhc----ccCCCCCCCCCccC
Confidence 346789999999999999996 5 689999999999999995 7999999 8888732 11245577899999
Q ss_pred ccCC
Q psy15991 387 HNLE 390 (393)
Q Consensus 387 tkl~ 390 (393)
|+|+
T Consensus 106 t~~s 109 (135)
T 1agq_A 106 VAFD 109 (135)
T ss_dssp EEEC
T ss_pred eecC
Confidence 9998
No 13
>2b5b_A Defensin; antibiotic; NMR {Caretta caretta}
Probab=50.40 E-value=4.5 Score=23.82 Aligned_cols=9 Identities=11% Similarity=0.456 Sum_probs=7.0
Q ss_pred CccccccCC
Q psy15991 382 MCWAIHNLE 390 (393)
Q Consensus 382 pCCvPtkl~ 390 (393)
-||||.|.+
T Consensus 28 iccvpvkvk 36 (36)
T 2b5b_A 28 ICCVPVKVK 36 (36)
T ss_dssp SCSSSCCBC
T ss_pred EEeEEEeeC
Confidence 499998864
No 14
>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens}
Probab=38.84 E-value=8.9 Score=22.30 Aligned_cols=11 Identities=27% Similarity=0.993 Sum_probs=9.3
Q ss_pred CccceEEcCCcccc
Q psy15991 326 EWQDWIIAPDGYGA 339 (393)
Q Consensus 326 GW~dWIIAP~gY~A 339 (393)
+|| |.|.||+.
T Consensus 7 ~WD---vpP~GyE~ 17 (28)
T 1jmt_B 7 YWD---VPPPGFEH 17 (28)
T ss_dssp CBT---CCCTTCTT
T ss_pred ccC---CCCCCccc
Confidence 687 99999984
No 15
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=25.67 E-value=28 Score=19.77 Aligned_cols=10 Identities=20% Similarity=0.328 Sum_probs=6.1
Q ss_pred CCCCCCCccc
Q psy15991 376 PKPQSLMCWA 385 (393)
Q Consensus 376 ~~~~~~pCCv 385 (393)
|+.-+.|||-
T Consensus 20 ppgppgpccg 29 (31)
T 4gyx_A 20 PPGPPGPCCG 29 (31)
T ss_dssp CCCCCCCCC-
T ss_pred CCCCCCCCcc
Confidence 3445788983
Done!