RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15991
         (393 letters)



>gnl|CDD|216062 pfam00688, TGFb_propeptide, TGF-beta propeptide.  This propeptide
           is known as latency associated peptide (LAP) in
           TGF-beta. LAP is a homodimer which is disulfide linked
           to TGF-beta binding protein.
          Length = 229

 Score =  136 bits (344), Expect = 5e-38
 Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 17/225 (7%)

Query: 39  LSTKEKQDVSHDLLNLLGLPLRPKHLFSNATSIEGSVPKFLMDIYRSL-DNPRRTTRSEF 97
           L  +  + +   LL+ LGL  RP    S   S    VP++++D+Y S   +    +    
Sbjct: 16  LKQERLEAIESQLLSKLGLKRRPNPSQSLPKS----VPQYMLDLYNSQSADDSGASADLE 71

Query: 98  NLGGKDLQSIDESDMIMGFSSRNHHVSNVRHEHGKRIWFDVSEVPPGETIVNSELRIYQM 157
            L        D ++ +  F+            H KR++F++S +P  E +  +ELR+Y  
Sbjct: 72  ELET----LADRANTVRSFADEEEFELEQVDGHRKRLFFNLSSIPEDELLTAAELRLYLE 127

Query: 158 INTTADPWLQFTVSIYQVLVDG-----ELEYVDSVNTTAGSEGWMLFNVTGPLVSWVAIP 212
               +       VS+Y+VL            +DS +      GW+ F+VT  +  W+  P
Sbjct: 128 PVEESSRSTTVRVSVYRVLKPSGSGEPITRLLDSRSVKISESGWLSFDVTPAVQRWLRQP 187

Query: 213 HSNKGLYLSVQPREKPIHEIRTEDIGIVASKVMHLEEKQPFMVAF 257
            +N GL L V   E    ++     G    + +   + +PF+V F
Sbjct: 188 ETNLGLELEVLDSEG--SDLAPTSAGPGGERHVW-SQLRPFLVVF 229


>gnl|CDD|215660 pfam00019, TGF_beta, Transforming growth factor beta like domain. 
          Length = 105

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 20/32 (62%), Positives = 24/32 (75%)

Query: 312 SCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCK 343
            C ++ LYV+FRDL W DWIIAP+GY A YC 
Sbjct: 3   PCRLRELYVDFRDLGWGDWIIAPEGYIANYCA 34


>gnl|CDD|214556 smart00204, TGFB, Transforming growth factor-beta (TGF-beta)
           family.  Family members are active as disulphide-linked
           homo- or heterodimers. TGFB is a multifunctional peptide
           that controls proliferation, differentiation, and other
           functions in many cell types.
          Length = 102

 Score = 58.8 bits (143), Expect = 5e-11
 Identities = 19/31 (61%), Positives = 24/31 (77%)

Query: 313 CSIQTLYVNFRDLEWQDWIIAPDGYGAFYCK 343
           C  + LYV+F+DL W DWIIAP GY A+YC+
Sbjct: 1   CRRRQLYVDFKDLGWDDWIIAPKGYNAYYCE 31


>gnl|CDD|222543 pfam14104, DUF4277, Domain of unknown function (DUF4277).  This
          presumed domain is functionally uncharacterized. This
          domain family is found in bacteria and archaea, and is
          approximately 110 amino acids in length. There is a
          conserved NGLGF sequence motif.
          Length = 115

 Score = 30.3 bits (69), Expect = 0.53
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 21 VLSGLYVDNGVDQIIQRTLSTKEKQDVSHD------LLNLLGLPLRPKHLFSN 67
          +++G+  + G+ +II   L     + VSH       +LN LG   RP +LF  
Sbjct: 16 LVAGIIDELGIVEIIDELLPKDSDEKVSHGQAVKAMILNGLGFVSRPLYLFPQ 68


>gnl|CDD|177497 PHA02913, PHA02913, TGF-beta-like protein; Provisional.
          Length = 172

 Score = 30.4 bits (68), Expect = 1.0
 Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 310 SHSCSIQTLYVNFR-DLEWQDWIIAPDGYGAFYC 342
              C I+   ++F+ D+  + WI+ P+G  A  C
Sbjct: 74  DAICCIRDFNIDFKADMGMK-WILKPEGTHANLC 106


>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
           component YidC; Validated.
          Length = 429

 Score = 29.8 bits (67), Expect = 2.7
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 252 PFMVAFFKSAHGGITVRPRSRRIRETTKSRKRKSMTETSNYRNPYTGFSDSMKEAAYN 309
           PF    +KS      +RP+ + +RE  K +     T+ ++ R       D  KE  YN
Sbjct: 49  PFTWQQYKSGRTAAHIRPKRKALREEYKGK-----TDEASIRELQQKQKDLNKEYGYN 101


>gnl|CDD|215363 PLN02677, PLN02677, mevalonate kinase.
          Length = 387

 Score = 29.0 bits (65), Expect = 4.3
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 143 PGETIVNSELRIYQMINTTADPWLQFTVSIYQVLVDGELEYVDSVNTTAGSEGWMLFNVT 202
           P   +V SEL +   + ++A     F V++   L    L   DS++ + G  GW   + T
Sbjct: 129 PATVVVTSELPLGSGLGSSA----AFCVALSAAL----LAASDSISVSTGGNGWSSLDET 180


>gnl|CDD|225890 COG3354, FlaG, Putative archaeal flagellar protein G [Cell motility
           and secretion].
          Length = 154

 Score = 28.2 bits (63), Expect = 4.6
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 159 NTTADPWLQFTVSIYQVLVDGELEYVDSVN-TTAGSEGWML 198
           NT +D  + F  +   VL+DG +     V  T+       L
Sbjct: 78  NTGSDS-IAFDNTSITVLIDGNIVTPAYVTFTSVNGSSIRL 117


>gnl|CDD|107357 cd06362, PBP1_mGluR, Ligand binding domain of the metabotropic
           glutamate receptors (mGluR).  Ligand binding domain of
           the metabotropic glutamate receptors (mGluR), which are
           members of the family C of G-protein-coupled receptors
           that transduce extracellular signals into G-protein
           activation and ultimately into cellular responses.
           mGluRs bind to glutamate and function as an excitatory
           neurotransmitter; they are involved in learning, memory,
           anxiety, and the perception of pain. Eight subtypes of
           mGluRs have been cloned so far, and are classified into
           three groups according to their sequence similarities,
           transduction mechanisms, and pharmacological profiles.
           Group I is composed of mGlu1R and mGlu5R that both
           stimulate PLC hydrolysis. Group II includes mGlu2R and
           mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R,
           mGlu6R, mGlu7R, and mGlu8R, which form group III.
          Length = 452

 Score = 28.4 bits (64), Expect = 8.7
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 261 AHGGITVRPRSRRIRETTKSRKRKSMTETSNYRNP 295
           A G IT+  +S  +          S+T  +N RNP
Sbjct: 281 AEGAITIELQSAEVPGF--DEYFLSLTPENNSRNP 313


>gnl|CDD|234528 TIGR04264, hyperosmo_Ebh, hyperosmolarity resistance protein Ebh,
            N-terminal domain.  Staphylococcal protein Ebh
            (extracellular matrix-binding protein homolog) is a giant
            protein, sometimes over 10,000 amino acids long as
            reported. This model describes a non-repetitive
            amino-terminal domain of about 2400 amino acids.
          Length = 2354

 Score = 28.3 bits (63), Expect = 9.7
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 11/105 (10%)

Query: 34   IIQRTLSTKEKQDVSHDLLNLLGLPLRPKH--LFSN------ATSIEGSVPKFLMDIYRS 85
            +I R  +T  +Q   +D+L+LL          L +N      A +  G  P +    Y S
Sbjct: 1132 LIYRYDATTGRQITLNDVLSLL--TATTSIPGLRNNISGQEKALAEAGGTPGYKPVGY-S 1188

Query: 86   LDNPRRTTRSEFNLGGKDLQSIDESDMIMGFSSRNHHVSNVRHEH 130
              N       ++   G+ +Q +D      G+  +    SN R   
Sbjct: 1189 KTNSISDGLRQYTYNGQVIQVLDLVQSSTGYGGQPVTYSNYRSNS 1233


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0747    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,915,375
Number of extensions: 1891371
Number of successful extensions: 1453
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1448
Number of HSP's successfully gapped: 14
Length of query: 393
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 294
Effective length of database: 6,546,556
Effective search space: 1924687464
Effective search space used: 1924687464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)