RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15991
(393 letters)
>3rjr_A Transforming growth factor beta-1; TGF beta, activation, integrin,
cytokine; HET: NAG; 3.05A {Sus scrofa}
Length = 363
Score = 121 bits (304), Expect = 2e-31
Identities = 55/323 (17%), Positives = 109/323 (33%), Gaps = 45/323 (13%)
Query: 33 QIIQRTLSTKEK-QDVSHDLLNLLGLPLRPKHLFSNATSIEGSVPKFLMDIYRSL-DNPR 90
+ I L +++ + + +L+ L L P G +P+ ++ +Y S D
Sbjct: 7 KTIDMELVKRKRIEAIRGQILSKLRLASPPSQ----GDVPPGPLPEAVLALYNSTRDRVA 62
Query: 91 RTTRSEFNLGGKDLQSIDESDMIMGFSSRNHHVSNVRHEHGKRIWFDVSE----VPPGET 146
+ D + + + ++M S + H + F+ SE VP
Sbjct: 63 GESVEPEPEPEADYYAKEVTRVLMVESGNQIYDKFKGTPHSLYMLFNTSELREAVPEPVL 122
Query: 147 IVNSELRIYQMINTTADPWLQFTVSIYQVLVDGELEYVDS-VNTTAGSEGWMLFNVTGPL 205
+ +ELR+ ++ ++ V +YQ Y+ + + + S W+ F+VTG +
Sbjct: 123 LSRAELRLLRL-----KLKVEQHVELYQKYSQDSWRYLSNRLLAPSDSPEWLSFDVTGVV 177
Query: 206 VSWVAIPHSNKGLYLSVQ-PREKPIHEIRTEDIGIV----ASKVMHLEEKQPFMVAFFKS 260
W+ + +G LS + + + E G +PF++
Sbjct: 178 RQWLTRREAIEGFRLSAHCSCDSKDNTLHVEINGFNSGRRGDLATIHGMNRPFLLLMATP 237
Query: 261 AHGGITVRPRSRRIRETTKSRKRKSMTETSNYRNPYTGFSDSMKEAAYNSHSCSIQTLYV 320
+ R T + +C ++ LY+
Sbjct: 238 LERAQHLHSSRHRRALDTNYCFSST------------------------EKNCCVRQLYI 273
Query: 321 NFRDLEWQDWIIAPDGYGAFYCK 343
+FR WI P GY A +C
Sbjct: 274 DFRKDLGWKWIHEPKGYHANFCL 296
>2r52_A BMP-6, bone morphogenetic protein 6; TGF-beta ligand,
chondrogenesis, cleavage on PAIR of basic residues,
cytokine, developmental protein; 2.50A {Homo sapiens}
Length = 143
Score = 67.7 bits (165), Expect = 6e-14
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 269 PRSRRIRETTKSRKRKSMTETSNYRNPYTGFSDSMKEAAYNSHSCSIQTLYVNFRDLEWQ 328
P S R +SR R + ++ + + ++ S +C LYV+F+DL WQ
Sbjct: 3 PTSASSRRRQQSRNRSTQSQDVARVSSASDYNSS-----ELKTACRKHELYVSFQDLGWQ 57
Query: 329 DWIIAPDGYGAFYCK 343
DWIIAP GY A YC
Sbjct: 58 DWIIAPKGYAANYCD 72
>1lxi_A Bone morphogenetic protein 7; cystine-knot growth factor,
hormone-growth factor complex; HET: NAG; 2.00A {Homo
sapiens} SCOP: g.17.1.2 PDB: 1lx5_A* 1bmp_A* 1m4u_L*
2qcw_A 2r53_A
Length = 139
Score = 64.6 bits (157), Expect = 7e-13
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 12/76 (15%)
Query: 268 RPRSRRIRETTKSRKRKSMTETSNYRNPYTGFSDSMKEAAYNSHSCSIQTLYVNFRDLEW 327
+ RS+ +T K+++ M + + + +C LYV+FRDL W
Sbjct: 5 KQRSQNRSKTPKNQEALRMANVAENSS------------SDQRQACKKHELYVSFRDLGW 52
Query: 328 QDWIIAPDGYGAFYCK 343
QDWIIAP+GY A+YC+
Sbjct: 53 QDWIIAPEGYAAYYCE 68
>2qcq_A Bone morphogenetic protein 3; BMP, TGF-beta, signaling protein;
2.21A {Homo sapiens}
Length = 110
Score = 62.5 bits (152), Expect = 2e-12
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 310 SHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCK 343
+C+ + L V+F D+ W +WII+P + A+YC
Sbjct: 5 PRNCARRYLKVDFADIGWSEWIISPKSFDAYYCS 38
>2arp_A Inhibin beta A chain; cystine knot, disulfide rich, EGF domain,
kazal domain, PROT complex, hormone-growth factor
complex; HET: 1PG; 2.00A {Homo sapiens} SCOP: g.17.1.2
PDB: 1nyu_B 1nys_B 1s4y_B* 2arv_A* 2b0u_A 2p6a_A 3b4v_A*
Length = 116
Score = 61.9 bits (150), Expect = 3e-12
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 309 NSHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCKQKYNSDPFRVNYENIPEYKRFLEAK 368
+ C + +V+F+D+ W DWIIAP GY A YC+ + S + + +
Sbjct: 7 KVNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPS-HIAGTSGSSLSFHSTVINH 65
Query: 369 RNLQNVPPKPQSLMCWA 385
++ P C
Sbjct: 66 YRMRGHSPFANLKSCCV 82
>1zkz_A Growth/differentiation factor 2; glycoprotein, growth factor,
cytokine, hormone-growth factor; 2.33A {Homo sapiens}
Length = 110
Score = 61.4 bits (149), Expect = 4e-12
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 310 SHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCK 343
C +L VNF D+ W WIIAP Y A+ CK
Sbjct: 5 GSHCQKTSLRVNFEDIGWDSWIIAPKEYEAYECK 38
>3evs_B Growth/differentiation factor 5; ligand-receptor complex,
cystin-knot ligand, three-finger to (receptor); 2.10A
{Homo sapiens} PDB: 1waq_A 3qb4_A 2bhk_A
Length = 117
Score = 61.1 bits (148), Expect = 7e-12
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 309 NSHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCK 343
CS + L+VNF+D+ W DWIIAP Y AF+C+
Sbjct: 12 LKARCSRKALHVNFKDMGWDDWIIAPLEYEAFHCE 46
>2h62_A BMP-2, BMP-2A, bone morphogenetic protein 2; TGF-beta superfamily,
ligand-receptor complex, hormone/growth factor complex;
1.85A {Homo sapiens} SCOP: g.17.1.2 PDB: 2goo_A* 1rew_A
3bmp_A 2qj9_B 1es7_A 2qja_A 2qjb_A 2h64_A 3bk3_A 1reu_A
Length = 114
Score = 60.3 bits (146), Expect = 1e-11
Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 309 NSHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCK 343
SC LYV+F D+ W DWI+AP GY AFYC
Sbjct: 10 LKSSCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCH 44
>2tgi_A Transforming growth factor ,beta 2; 1.80A {Homo sapiens} SCOP:
g.17.1.2 PDB: 1tfg_A 1tgj_A 1ktz_A 1tgk_A 2pjy_A 3eo1_C
1kla_A 1klc_A 1kld_A 3kfd_A
Length = 112
Score = 56.5 bits (136), Expect = 2e-10
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 309 NSHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCK 343
+C ++ LY++F+ WI P GY A +C
Sbjct: 11 VQDNCCLRPLYIDFKRDLGWKWIHEPKGYNANFCA 45
>3hh2_A Growth/differentiation factor 8; protein-protein complex, TB
domain, cystine knot motif, TGF- fold, disulfide linked
dimer, CLE PAIR of basic residues, cytokine; HET: CIT;
2.15A {Mus musculus} PDB: 3sek_B*
Length = 109
Score = 53.8 bits (129), Expect = 2e-09
Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 309 NSHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCK 343
C L V+F W DWIIAP Y A YC
Sbjct: 11 TESRCCRYPLTVDFEAFGW-DWIIAPKRYKANYCS 44
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 2e-08
Identities = 66/433 (15%), Positives = 128/433 (29%), Gaps = 137/433 (31%)
Query: 2 FKIQCELSFVLFSITVVHAVLSGLYVDNGVDQIIQRTLSTKEKQDVSHDL-LNLLGLPLR 60
+K+QC++ F +F + + + N + +++ Q + + + N
Sbjct: 174 YKVQCKMDFKIFWLNLKN--------CNSPETVLEML------QKLLYQIDPNWTSRSDH 219
Query: 61 PKHLFSNATSIEGSVPKFLMD-IYRS----LDN--PRRTTRSEFNLGGKDL---QSIDES 110
++ SI+ + + L Y + L N + + FNL K L + +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA-FNLSCKILLTTRFKQVT 278
Query: 111 DMIMGFSSRNHHVSNVRHEHG-----------KRIWFDVSEVPPGETIVNSELRIYQMI- 158
D + + H+S H K + ++P E + + R+ +I
Sbjct: 279 DFLSA--ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-EVLTTNPRRL-SIIA 334
Query: 159 ------NTTADPWLQFTVSIYQVLVDGELEYVDSVNTTAGSEGWMLFNVTGPLVSWVAIP 212
T D W +++ L ++ P
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE--------------------------P 368
Query: 213 HSNKGLY--LSVQPREKPI---------HEIRTEDIGIVASKVMH---LEEKQPFMVAFF 258
+ ++ LSV P I ++ D+ +V +K +H L EKQP
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK-LHKYSLVEKQPKESTI- 426
Query: 259 KSAHGGITVRPRSRRIRETTKSRKRKSMTETSNYRNPYTGFSDSMKEAAYNSHSCSIQTL 318
S + K ++ H SI
Sbjct: 427 -SIPS--------IYLELKVKLENEYAL------------------------HR-SIVDH 452
Query: 319 YVNFRDLEWQDWIIAP-DGYGAFY-------CKQKYNSDPFRVNYENIPEYKRFLEAK-R 369
Y + + D I D Y + + FR+ + + RFLE K R
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF----RFLEQKIR 508
Query: 370 NLQNVPPKPQSLM 382
+ S++
Sbjct: 509 HDSTAWNASGSIL 521
Score = 38.7 bits (89), Expect = 0.003
Identities = 44/289 (15%), Positives = 73/289 (25%), Gaps = 91/289 (31%)
Query: 102 KDLQSIDESDMIMG-FSSRN-HHVSNVRH-EHGKRIWFDVSEVPPGETI---VNSELRI- 154
+ D DM S H+ + G F E + V LRI
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90
Query: 155 YQMINTTADPWLQFTVSIYQVLVDGELE---YVDSVNTTAGSEGWMLFNVTGPLVSWVAI 211
Y +L I + Y++ + L+N
Sbjct: 91 Y--------KFL--MSPIKTEQRQPSMMTRMYIEQRDR--------LYNDNQVFAK---- 128
Query: 212 PHSNKGLYLSVQPREKPIHEIRTEDIGIVASKVMHLEEKQPFMVAFFKSAHG----GITV 267
+V R +P ++R L E +P A G G T
Sbjct: 129 --------YNV-SRLQPYLKLRQ-----------ALLELRP---AKNVLIDGVLGSGKTW 165
Query: 268 RPRSRRIRETTKSRKRKSMTETSNYRNPYTGFSDSMKEAAYNSHSCSI---QTLYVNFRD 324
+ S K + + + F ++K NS + Q L
Sbjct: 166 -----VALDVCLSYKVQC-------KMDFKIFWLNLKN--CNSPETVLEMLQKLLYQID- 210
Query: 325 LEWQDWIIAPDGYGAFYCKQKYNSDPFRVNYENIPEYKRFLEAKRNLQN 373
+W D +S ++ +I R L + +N
Sbjct: 211 ---PNWTSRSD-----------HSSNIKLRIHSIQAELRRLLKSKPYEN 245
Score = 27.9 bits (61), Expect = 7.7
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 327 WQDWIIAPDGYGAFYCKQK---YNSDPFRVNYENIPEYKRFLEAKRNLQNVPPKP 378
+ P Y +Q+ YN + Y N+ + +L+ ++ L + P
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-NVSRLQPYLKLRQALLELRPAK 151
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 3e-05
Identities = 36/226 (15%), Positives = 76/226 (33%), Gaps = 50/226 (22%)
Query: 62 KHLFSNATSIEGSVPKF-LMDIYRSLDNPRRTTRSEFNLGGKDLQSIDESDMIMGFSSRN 120
+ +++ A + F ++DI +NP T + GG+ + I E+ M F +
Sbjct: 1643 QDVWNRADNHFKDTYGFSILDIVI--NNPVNLT---IHFGGEKGKRIRENYSAMIFET-- 1695
Query: 121 HHVSNVRHEHGKRIWFDVSEVPPGETIVNSELRIYQMINTTADPWLQ---FTVS--IYQV 175
++I+ +++E T + + + T Q + ++
Sbjct: 1696 ---IVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT------QPALTLMEKAAFED 1746
Query: 176 LVDGELEYVDSVNTTAG-S--E--------GWMLFNVTGPLVSWVAIPHSNKGLYLSVQP 224
L + + T AG S E M +V +G+ + V
Sbjct: 1747 L--KSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVV-------FYRGMTMQVAV 1797
Query: 225 REKPIHEIRTEDIGIVA---SKVMHL--EEKQPFMVAFFKSAHGGI 265
P E+ + G++A +V +E ++V G +
Sbjct: 1798 ---PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL 1840
Score = 45.4 bits (107), Expect = 3e-05
Identities = 67/454 (14%), Positives = 120/454 (26%), Gaps = 188/454 (41%)
Query: 18 VHAVLSGLYVDNGVDQIIQRTLSTKEKQDVSH--DLLNLLGLPLRPKH---LFSNATSIE 72
+HA+ + L +N T K K+ + + + P K LF E
Sbjct: 101 IHALAAKLLQEN-------DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG--E 151
Query: 73 GSVPKFLMDIYRSLDNPRRTTRSEFNLGG--------KDLQS------------IDESDM 112
G+ + + F GG ++L+ I S
Sbjct: 152 GNAQ-----LV-----------AIF--GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE 193
Query: 113 IMGFSSRNHHVSNVRHEHGKRI--WFDVSEVPPGETIVNSE------LRIYQMIN----- 159
+ R + G I W + P + + S + + Q+ +
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA 253
Query: 160 -----------------TT-------------ADPWLQFTVSIYQVL------------- 176
T D W F VS+ + +
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA 313
Query: 177 ---VDGELEYV-DSVNTTAGSEGWMLFNVTGPLVSWV--AIPHSNKGLYLSVQPREKPIH 230
+ DS+ G ML +++ V + +N L P K +
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPML-SISNLTQEQVQDYVNKTNSHL-----PAGKQVE 367
Query: 231 EIRTEDIGIVASKVMHLEEKQPFMVAFFKSAHGGITVRPRS-RRIRETTKSRKRKSMTET 289
I +V + +V+ G P+S + RK K+ +
Sbjct: 368 ------ISLVNG-------AKNLVVS------G----PPQSLYGLN--LTLRKAKAPSGL 402
Query: 290 SNYRNPYTG--------F--------SDSMKEAAYNSHSCSIQTLYVNFRDLEW--QDWI 331
R P++ F S + A+ + + ++ + +D
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS------DLINKDLVKNNVSFNAKDIQ 456
Query: 332 IAP-----DGYGAFYCKQKYNSDPFRVNYENIPE 360
I P DG SD RV +I E
Sbjct: 457 I-PVYDTFDG-----------SD-LRVLSGSISE 477
Score = 42.0 bits (98), Expect = 3e-04
Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 51/135 (37%)
Query: 14 SITVV----HAVLSG----LY----------VDNGVDQIIQRTLSTKEKQDVSHDLLNLL 55
I++V + V+SG LY +G+DQ R ++ K S+ L
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ--SRIPFSERKLKFSNRFL--- 421
Query: 56 GLPLR-PKHLFSNATSI-EGSVPKFLMDIYR--------SLDNPRRTTRSEFNLGGKDLQ 105
P+ P H + + + D+ + + P T G DL+
Sbjct: 422 --PVASPFH-----SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD-----GSDLR 469
Query: 106 SIDES------DMIM 114
+ S D I+
Sbjct: 470 VLSGSISERIVDCII 484
>1agq_A GDNF, glial cell-derived neurotrophic factor; growth factor,
cystine knot; 1.90A {Rattus norvegicus} SCOP: g.17.1.2
PDB: 3fub_B* 2v5e_B*
Length = 135
Score = 36.3 bits (83), Expect = 0.004
Identities = 11/76 (14%), Positives = 21/76 (27%), Gaps = 15/76 (19%)
Query: 267 VRPRSRRIRETTKSRKRKSMTETSNYRNPYTGFSDSMKEAAYNSHSCSIQTLYVNFRDLE 326
PR R R+ + S + + + C + +++N DL
Sbjct: 9 ALPRRERNRQAAAASPENSRGKGR-------------RGQRGKNRGCVLTAIHLNVTDLG 55
Query: 327 WQDWIIAPDGYGAFYC 342
+ YC
Sbjct: 56 LGYE--TKEELIFRYC 69
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme,
oxidoreductase; HET: NAG FAD; 1.55A {Acremonium
strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A*
Length = 503
Score = 32.0 bits (73), Expect = 0.37
Identities = 17/98 (17%), Positives = 26/98 (26%), Gaps = 25/98 (25%)
Query: 288 ETSNYRNPYTGFSDSMKEAAYNSHSCSIQTLYVNFRDLEW--QDWIIAPDGYGAFYC--- 342
TS Y F ++ + Y N+ D ++ +
Sbjct: 401 NTSPYPESGFEFMQGFVATIEDTLPEDRKGKYFNYADTTLTKEEAQKLY--WRGNLEKLQ 458
Query: 343 --KQKYNSDPFRVNYENIPEYKRFLEAKRNLQNVPPKP 378
K KY DP V F N+ +V P
Sbjct: 459 AIKAKY--DPEDV----------F----GNVVSVEPIA 480
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation,
alakloid biosynt oxidoreductase, alkaloid metabolism;
HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica}
PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A*
3fwa_A*
Length = 495
Score = 30.6 bits (69), Expect = 0.98
Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 17/100 (17%)
Query: 288 ETSNYRNPYTGFSDSMKEAAYNSHSCSIQTLYVNFRD--LEWQDWIIAPDGYGAFYCKQK 345
+ + + + + E S + + YVN D L DW A +
Sbjct: 400 SEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRS 459
Query: 346 YNSDPFRVNYENIPEYKRFLEAK---------RNLQNVPP 376
+ F NYE R + AK + Q++PP
Sbjct: 460 WGESYFLSNYE------RLIRAKTLIDPNNVFNHPQSIPP 493
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex,
glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55;
2.30A {Nonomuraea SP} PDB: 2wdw_A*
Length = 523
Score = 30.3 bits (68), Expect = 1.3
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 28/70 (40%)
Query: 319 YVNFRDLEWQDWIIAPDG-------YGAFYC-----KQKYNSDPFRVNYENIPEYKRFLE 366
Y+N+ D + D + G Y + K Y DP F
Sbjct: 470 YINYPDSDLADPGLNTSGVPWHDLYYKGNHPRLRKVKAAY--DPRNH----------F-- 515
Query: 367 AKRNLQNVPP 376
+ ++ P
Sbjct: 516 --HHALSIRP 523
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 28.5 bits (63), Expect = 1.4
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 9/52 (17%)
Query: 351 FRVNYEN------IPEYKRFLEAKRNLQ---NVPPKPQSLMCWAIHNLEDSN 393
FRV Y + + + E K+ L+ +P L W ++EDS
Sbjct: 12 FRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDST 63
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation,
oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa}
Length = 518
Score = 29.9 bits (67), Expect = 1.5
Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 17/100 (17%)
Query: 288 ETSNYRNPYTGFSDSMKEAAYNSHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCKQKYN 347
E + + S+ S + + Y+N+RDL+ + + +
Sbjct: 423 EKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGK--TNHASPNNYTQARIWG 480
Query: 348 SDPFRVNYENIPEYKRFLEAK---------RNLQNVPPKP 378
F N+ R ++ K RN Q++PP P
Sbjct: 481 EKYFGKNFN------RLVKVKTKVDPNNFFRNEQSIPPLP 514
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 29.7 bits (66), Expect = 1.8
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 333 APDGYGAFYCKQKYNSDPFRVNYENIPEYKRFL 365
A GA++C+ + + R+ + + FL
Sbjct: 71 ASKINGAYFCEGRVRGEAIRIRTMKMRQQASFL 103
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin
biosynthesis, covalently bound FAD, oxidoreductase; HET:
FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A*
Length = 501
Score = 29.1 bits (65), Expect = 2.8
Identities = 14/79 (17%), Positives = 23/79 (29%), Gaps = 20/79 (25%)
Query: 298 GFSDSMKEAAYNSHSCSIQTL--YVNFRDLEWQDWIIAPDG-------YGAFYC-----K 343
G + +T Y+N+ D + D G Y Y K
Sbjct: 425 GLYEEFFAGTGGVPVTGGRTDGCYINYPDADLLDPARNRSGEPWHHLYYKDNYARLRSAK 484
Query: 344 QKYNSDP---FRVNYENIP 359
+ + DP F + +I
Sbjct: 485 RAW--DPLNTFHHSM-SIG 500
>2ask_A Artemin; glial cell derived family ligand, neurotrphoic growth
factor, sulfates, hormone/growth factor complex; 1.55A
{Homo sapiens} PDB: 2gyz_A 2gyr_A 2gh0_C*
Length = 113
Score = 27.6 bits (61), Expect = 2.9
Identities = 5/32 (15%), Positives = 10/32 (31%), Gaps = 2/32 (6%)
Query: 312 SCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCK 343
C +++ V R L + +C
Sbjct: 15 GCRLRSQLVPVRALGLGHRSDELVRF--RFCS 44
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB:
2y3r_A* 2y08_A* 2y4g_A*
Length = 530
Score = 28.4 bits (63), Expect = 4.3
Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 28/72 (38%)
Query: 319 YVNFRDLEWQDWIIAPDG-------YGAFYC-----KQKYNSDPFRVNYENIPEYKRFLE 366
YVN+ D++ D G Y Y K ++ DP N+ F
Sbjct: 474 YVNYPDVDLADEEWNTSGVPWSELYYKDAYPRLQAVKARW--DP-----RNV-----F-- 519
Query: 367 AKRNLQNVPPKP 378
R+ +V P
Sbjct: 520 --RHALSVRVPP 529
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD
binding domain, BERB berberine-like domain,
glucooligosaccharide oxidase; HET: FAD NAG ABL TRS;
2.10A {Microdochium nivale} PDB: 3rj8_A*
Length = 473
Score = 28.5 bits (64), Expect = 4.4
Identities = 16/83 (19%), Positives = 22/83 (26%), Gaps = 21/83 (25%)
Query: 299 FSDSMKEAAYNSHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYC-----KQKYNSDPFRV 353
F D + + S +Y+N+ D YG K K+ DP
Sbjct: 405 FLDGWVNSVTKALPKSDWGMYINYADPRMDRDYATKVYYGENLARLQKLKAKF--DPTDR 462
Query: 354 NYENIPEYKRFLEAKRNLQNVPP 376
F Q V P
Sbjct: 463 ----------F----YYPQAVRP 471
>3v7i_A Putative polyketide synthase; type III polyketide synthase,
acyltransferase, transferase,; 2.90A {Streptomyces
coelicolor}
Length = 413
Score = 28.0 bits (62), Expect = 5.5
Identities = 13/77 (16%), Positives = 18/77 (23%)
Query: 251 QPFMVAFFKSAHGGITVRPRSRRIRETTKSRKRKSMTETSNYRNPYTGFSDSMKEAAYNS 310
+V + H PR I +T R M P G A
Sbjct: 43 TREIVEEVRGRHPHAPWAPRIDGIAASTGIESRGWMLPLEAAVAPGGGGDLGAAREALVR 102
Query: 311 HSCSIQTLYVNFRDLEW 327
+ Q L+
Sbjct: 103 DGFTEQDANRAIAALKA 119
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A
catalytic subunit; SAM dependent methyltransferase; HET:
SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37
PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Length = 334
Score = 27.5 bits (60), Expect = 8.5
Identities = 4/55 (7%), Positives = 15/55 (27%)
Query: 280 SRKRKSMTETSNYRNPYTGFSDSMKEAAYNSHSCSIQTLYVNFRDLEWQDWIIAP 334
K + E+ R + ++ + + + D+ ++
Sbjct: 134 ELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDLNDITETTRLLDV 188
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 27.2 bits (61), Expect = 9.2
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 13 FSITVVHAVLSGLYVDNGVDQIIQRTLSTKEKQDVSHDLLNLLGL 57
V+ V+SG + GV Q I E ++ +H LL L+G+
Sbjct: 112 EGERVIDVVISGAFKSIGVYQDI-----DDEIRNEAHQLLKLVGM 151
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.405
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,995,859
Number of extensions: 350821
Number of successful extensions: 672
Number of sequences better than 10.0: 1
Number of HSP's gapped: 663
Number of HSP's successfully gapped: 34
Length of query: 393
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 297
Effective length of database: 4,021,377
Effective search space: 1194348969
Effective search space used: 1194348969
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.5 bits)