RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15991
         (393 letters)



>d2arpa1 g.17.1.2 (A:1-116) Activin A (Inhibin beta A) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 116

 Score = 63.1 bits (153), Expect = 4e-13
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 309 NSHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCKQKYNSDPFRVNYENIPEYKRFLEAK 368
             + C  +  +V+F+D+ W DWIIAP GY A YC+ +  S        +   +   +   
Sbjct: 7   KVNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPS-HIAGTSGSSLSFHSTVINH 65

Query: 369 RNLQNVPPKPQSLMC 383
             ++   P      C
Sbjct: 66  YRMRGHSPFANLKSC 80


>d2h62a1 g.17.1.2 (A:12-114) Bone morphogenetic protein-2 (BMP-2)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 103

 Score = 59.9 bits (145), Expect = 5e-12
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 312 SCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCKQKY 346
           SC    LYV+F D+ W DWI+AP GY AFYC  + 
Sbjct: 2   SCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGEC 36


>d1lxia_ g.17.1.2 (A:) Bone morphogenetic protein-7 (BMP-7) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 104

 Score = 58.8 bits (142), Expect = 1e-11
 Identities = 21/33 (63%), Positives = 26/33 (78%)

Query: 311 HSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCK 343
            +C    LYV+FRDL WQDWIIAP+GY A+YC+
Sbjct: 1   QACKKHELYVSFRDLGWQDWIIAPEGYAAYYCE 33


>d2tgia_ g.17.1.2 (A:) TGF-beta2 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 112

 Score = 54.2 bits (130), Expect = 7e-10
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 309 NSHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCK 343
              +C ++ LY++F+      WI  P GY A +C 
Sbjct: 11  VQDNCCLRPLYIDFKRDLGWKWIHEPKGYNANFCA 45


>d1agqa_ g.17.1.2 (A:) Glial cell-derived neurotrophic factor, GDNF
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 97

 Score = 46.4 bits (110), Expect = 2e-07
 Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 2/34 (5%)

Query: 310 SHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCK 343
           +  C +  +++N  DL         +     YC 
Sbjct: 1   NRGCVLTAIHLNVTDLGLG--YETKEELIFRYCS 32


>d1x9na2 b.40.4.6 (A:754-901) DNA ligase I (LIG1) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 148

 Score = 30.4 bits (68), Expect = 0.19
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 7/100 (7%)

Query: 178 DGELEYVDSVNTTAGSEGWMLFNVTGPLVSWVAIPHSNKGLYLSVQPREKPIHEIRTEDI 237
             EL+ +  + T     G+    +     S  A+   +   Y+ +     P H +    +
Sbjct: 34  SEELQAICKLGT-----GFSDEELEEHHQSLKALVLPSPRPYVRIDGAVIPDHWLDPSAV 88

Query: 238 GIVASKVMHLEEKQPFMVAFFKSAHGGITVR-PRSRRIRE 276
             V    + L    P       S  G I++R PR  R+RE
Sbjct: 89  WEVKCADLSLSPIYPAARGLVDSDKG-ISLRFPRFIRVRE 127


>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase
           fragment {Escherichia coli, gene dnaK [TaxId: 562]}
          Length = 198

 Score = 28.3 bits (63), Expect = 1.2
 Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 3/80 (3%)

Query: 22  LSGLYVDNGVDQIIQRTLSTKEKQDVSHDLLNLLGLPL---RPKHLFSNATSIEGSVPKF 78
           L G   D+ +   +       +  D+ +D L +  L     + K   S+A   + ++P  
Sbjct: 42  LGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYI 101

Query: 79  LMDIYRSLDNPRRTTRSEFN 98
             D         + TR++  
Sbjct: 102 TADATGPKHMNIKVTRAKLE 121


>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 328

 Score = 26.6 bits (58), Expect = 6.5
 Identities = 4/55 (7%), Positives = 15/55 (27%)

Query: 280 SRKRKSMTETSNYRNPYTGFSDSMKEAAYNSHSCSIQTLYVNFRDLEWQDWIIAP 334
             K   + E+   R       +   ++ +       +    +  D+     ++  
Sbjct: 133 ELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDLNDITETTRLLDV 187


>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus
           thermophilus [TaxId: 274]}
          Length = 171

 Score = 25.6 bits (55), Expect = 8.2
 Identities = 18/113 (15%), Positives = 30/113 (26%), Gaps = 7/113 (6%)

Query: 266 TVRPRSRRIRETTKSRKRKSMTETSNYRNPYTGFSDSMKEAAYNSHSCSIQTLYVNFRDL 325
           + RP   R+R+      R        + +P+ G      EAA       +         L
Sbjct: 19  SARPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRL 78

Query: 326 EWQDWIIAPDGYG-------AFYCKQKYNSDPFRVNYENIPEYKRFLEAKRNL 371
             ++      G          F  + K   + F V +   P           L
Sbjct: 79  LKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYAMDLAALFGEL 131


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0665    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,478,140
Number of extensions: 68707
Number of successful extensions: 169
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 10
Length of query: 393
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 306
Effective length of database: 1,213,086
Effective search space: 371204316
Effective search space used: 371204316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)