BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15995
(683 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 499 bits (1286), Expect = e-141, Method: Compositional matrix adjust.
Identities = 275/662 (41%), Positives = 381/662 (57%), Gaps = 72/662 (10%)
Query: 35 IFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYS 94
+F +LPRT RG +VLG P G Y NG SV + + ++IYTEHS VAK S
Sbjct: 9 LFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTS 68
Query: 95 PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGF 154
PSG+Y ASGD+ G VRIWDT HILK GP+KDI
Sbjct: 69 PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDIS------------------ 110
Query: 155 YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVF 214
WD+ +++R+ VGEGRERFGHVF
Sbjct: 111 -------------WDS-------------------------ESKRIAAVGEGRERFGHVF 132
Query: 215 MSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRF 274
+ +TGTS G ++GQ++ +NS DFKPSRPFRII+GS+DNT+A+FEGPPFKFK T EH++F
Sbjct: 133 LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKF 192
Query: 275 VQAVRYSPSGSHFASAGFDGKVFLYDGASADLV-----SELGNPAHKGGVYAVAWKPDGT 329
V +VRY+P GS FAS G DG + LY+G L N AH G V+ + W PDGT
Sbjct: 193 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT 252
Query: 330 QLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVN 389
++ +AS DKT K+W++ T V +G ++EDQQ+ +W L+++S +GFI++++
Sbjct: 253 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 312
Query: 390 NPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQIN 449
S +V GHNK ITAL+ S D T+F+ +G I W+ TG ++RV H I
Sbjct: 313 LGSID-QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMIT 371
Query: 450 GMKATGE-LLYTCGIDDTIKQVDLSSNAYSGPEV---KLGSQPRGLDI--DENTLVTVTV 503
G+K T + L+T DD +K V + + KL SQP GL + D + V
Sbjct: 372 GIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY 431
Query: 504 KQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDH 563
K I+I +G K++ +PI Y S ++L ++ VAVGG DSKVH+Y+L+ S+S + H
Sbjct: 432 KHIAIYSHG-KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVH 490
Query: 564 LGPVTDCSFSPSNEYLVASDAHRKVVLYRVP-DFELAHNKEWGFHSAKVNCVAWSPDSAL 622
+T +FS + +LVA+D RKV+ Y V +FELAH W FH+AKV CV+WSPD+
Sbjct: 491 PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR 550
Query: 623 VASGSLDTTIIIWSLASPAKH-IIIKNAHPQSQITRLQWLDNDLLVSVGQDCNTKIWEIA 681
+A+GSLD ++I+W++ P+ H IIIK AH S + + WL+ +VS GQD N K W +
Sbjct: 551 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV- 609
Query: 682 PF 683
PF
Sbjct: 610 PF 611
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 253 bits (647), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 177/557 (31%), Positives = 300/557 (53%), Gaps = 55/557 (9%)
Query: 155 YIASGDISGKVRIWD-TVNKEHI-----LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE 208
Y+ SGD SGKV +W T +KE +K+EF + GPI DI+W + +R+ VVGEGR+
Sbjct: 80 YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD 139
Query: 209 RFGHVFMS-ETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT 267
FG VF+S ++G S+GE+SG S+ IN+C K SRP R +T +D ++ ++GPPFKF +
Sbjct: 140 NFG-VFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS 198
Query: 268 KQEHSR---FVQAVRYSP-SGSHFASAGFDGKVFLYDGASADLVSELGNPAH--KGGVYA 321
+ H + FV+ V +SP SG + G D K+ +DG S + + + + +GG++A
Sbjct: 199 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 258
Query: 322 VAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMG-NQVEDQQVSCLWQGD-YLLTVSL 379
++W D + T D T ++WD+ T V ++ + Q+ +QQV + G+ ++++SL
Sbjct: 259 LSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 317
Query: 380 SGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRV 439
G +++ ++ + ++ I GHNK ITAL ++P + +GS+DG I W++ + D
Sbjct: 318 DGTLNFYELGHDEV-LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQD-- 370
Query: 440 QGAGHGNQINGMKATGELLYTC-GIDDTIKQVDLSSNAYSGPEVKLGSQPR--GLDIDEN 496
H N I + + Y+ DDT+K ++ + + GSQP+ + D
Sbjct: 371 ----HSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEF-------GSQPKVASANNDGF 419
Query: 497 TLVTVTVKQISIVEN--GAKVSSLPIDYEPSSISLDHEHGLVAVGGAD-SKVHIYELNNK 553
T V + I+++ G + S+ ++ S++SL + VAVG + + + +++L++
Sbjct: 420 TAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNY--VAVGLEEGNTIQVFKLSDL 477
Query: 554 SLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNC 613
+S + + S SPS Y+ A D K++LY + E+ ++ W F ++K+N
Sbjct: 478 EVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR-WAFRTSKINA 536
Query: 614 VAWSP----------DSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWLDN 663
++W P + LVA+GSLDT I I+S+ P K I NAH + + L W
Sbjct: 537 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH-KDGVNNLLWETP 595
Query: 664 DLLVSVGQDCNTKIWEI 680
LVS G D K W +
Sbjct: 596 STLVSSGADACIKRWNV 612
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 64 GNSVIIRNIENPAIS-DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 118
GN++ + + + +S D+ T + SPS YIA+GD+ GK+ ++D ++E
Sbjct: 466 GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE 521
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 249 bits (637), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 174/556 (31%), Positives = 295/556 (53%), Gaps = 53/556 (9%)
Query: 155 YIASGDISGKVRIWD-TVNKEHI-----LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE 208
Y+ SGD SGKV +W T +KE +K+EF + GPI DI+W + +R+ VVGEGR+
Sbjct: 80 YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD 139
Query: 209 RFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK 268
FG ++G S+GE+SG S+ IN+C K SRP R T +D ++ ++GPPFKF +
Sbjct: 140 NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPXRSXTVGDDGSVVFYQGPPFKFSASD 199
Query: 269 QEHSR---FVQAVRYSP-SGSHFASAGFDGKVFLYDGASADLVSELGNPAH--KGGVYAV 322
+ H + FV+ V +SP SG + G D K+ +DG S + + + + +GG++A+
Sbjct: 200 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 259
Query: 323 AWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMG-NQVEDQQVSCLWQGD-YLLTVSLS 380
+W D + T D T ++WD+ T V ++ + Q+ +QQV + G+ ++++SL
Sbjct: 260 SWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 318
Query: 381 GFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQ 440
G +++ ++ + ++ I GHNK ITAL ++P + +GS+DG I W++ + D
Sbjct: 319 GTLNFYELGHDEV-LKTISGHNKGITALTVNP----LISGSYDGRIXEWSSSSXHQD--- 370
Query: 441 GAGHGNQINGMKATGELLYTC-GIDDTIKQVDLSSNAYSGPEVKLGSQPR--GLDIDENT 497
H N I + + Y+ DDT+K ++ + + GSQP+ + D T
Sbjct: 371 ---HSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEF-------GSQPKVASANNDGFT 420
Query: 498 LVTVTVKQISIVEN--GAKVSSLPIDYEPSSISLDHEHGLVAVGGAD-SKVHIYELNNKS 554
V + I+++ G + S+ ++ S++SL + VAVG + + + +++L++
Sbjct: 421 AVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNY--VAVGLEEGNTIQVFKLSDLE 478
Query: 555 LSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCV 614
+S + + S SPS Y+ A D K++LY + E+ ++ W F ++K+N +
Sbjct: 479 VSFDLKTPLRAKPSYISISPSETYIAAGDVXGKILLYDLQSREVKTSR-WAFRTSKINAI 537
Query: 615 AWSP----------DSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWLDND 664
+W P + LVA+GSLDT I I+S+ P K I NAH + + L W
Sbjct: 538 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPXKIIKALNAH-KDGVNNLLWETPS 596
Query: 665 LLVSVGQDCNTKIWEI 680
LVS G D K W +
Sbjct: 597 TLVSSGADACIKRWNV 612
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 64 GNSVIIRNIENPAIS-DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 118
GN++ + + + +S D+ T + SPS YIA+GD+ GK+ ++D ++E
Sbjct: 466 GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVXGKILLYDLQSRE 521
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 130/593 (21%), Positives = 240/593 (40%), Gaps = 53/593 (8%)
Query: 54 PKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 113
P G+ + + + N + T HS +V +SP G IAS V++W+
Sbjct: 26 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 85
Query: 114 TVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNK 173
N + + H +S+R + G IAS V++W N+
Sbjct: 86 R-NGQLLQTLTGHS--------------SSVRGVAFSPDGQTIASASDDKTVKLW---NR 127
Query: 174 EHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPIN 233
L + +A+SPD Q + + + + G + ++G S +
Sbjct: 128 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV---KLWNRNGQLLQTLTGHSSSVW 184
Query: 234 SCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD 293
F P I + S+D T+ ++ + T HS V+ V +SP G ASA D
Sbjct: 185 GVAFSPDGQ-TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 242
Query: 294 GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSE 353
V L++ + L+ L H V VA++PDG + +AS DKT KLW+ + + +
Sbjct: 243 KTVKLWN-RNGQLLQTL--TGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLL--Q 297
Query: 354 FIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPD 413
+ G+ V+ G + + S + + N ++ + GH+ + +A SPD
Sbjct: 298 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--HLQTLTGHSSSVWGVAFSPD 355
Query: 414 RGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKAT--GELLYTCGIDDTIK--- 468
T+ + S D + WN + G+ + GH + + G+ + G+ + + D T+K
Sbjct: 356 GQTIASASDDKTVKLWN-RNGQLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 413
Query: 469 ---QVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTV-KQISIVENGAKVSSLPIDYEP 524
Q+ + +S + P D+ T+ + + K + + ++ +
Sbjct: 414 RNGQLLQTLTGHSSSVWGVAFSP-----DDQTIASASDDKTVKLWNRNGQLLQTLTGHSS 468
Query: 525 S--SISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS 582
S ++ + +A D V ++ N + L + H V +FSP + + ++
Sbjct: 469 SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL--QTLTGHSSSVRGVAFSPDGQTIASA 526
Query: 583 DAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIW 635
+ V L+ L + HS+ V VA+SPD +AS S D T+ +W
Sbjct: 527 SDDKTVKLWNRNGQLL---QTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 128/565 (22%), Positives = 227/565 (40%), Gaps = 57/565 (10%)
Query: 84 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTS 143
HS +V +SP G IAS V++W+ N + + H +S
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--------------SS 59
Query: 144 IRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV 203
+ + G IAS V++W N+ L ++ +A+SPD Q +
Sbjct: 60 VWGVAFSPDGQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASA 116
Query: 204 GEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK 263
+ + + G + ++G S + F P I + S+D T+ ++ +
Sbjct: 117 SDDKTV---KLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWN-RNGQ 171
Query: 264 FKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVA 323
T HS V V +SP G ASA D V L++ + L+ L H V VA
Sbjct: 172 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL--TGHSSSVRGVA 228
Query: 324 WKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFI 383
+ PDG + +AS DKT KLW+ + + + + G+ V+ G + + S +
Sbjct: 229 FSPDGQTIASASDDKTVKLWNRNGQLL--QTLTGHSSSVNGVAFRPDGQTIASASDDKTV 286
Query: 384 SYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAG 443
+ N ++ + GH+ + +A SPD T+ + S D + WN + G++ + G
Sbjct: 287 KLWNRNGQ--LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTL-TG 342
Query: 444 HGNQINGMKAT--GELLYTCGIDDTIK------QVDLSSNAYSGPEVKLGSQPRGLDI-- 493
H + + G+ + G+ + + D T+K Q+ + +S + P G I
Sbjct: 343 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIAS 402
Query: 494 ---DENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYEL 550
D+ + Q+ G S + + P + +A D V ++
Sbjct: 403 ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP-------DDQTIASASDDKTVKLWNR 455
Query: 551 NNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAK 610
N + L + H V +FSP + + ++ + V L+ L + HS+
Sbjct: 456 NGQLL--QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL---QTLTGHSSS 510
Query: 611 VNCVAWSPDSALVASGSLDTTIIIW 635
V VA+SPD +AS S D T+ +W
Sbjct: 511 VRGVAFSPDGQTIASASDDKTVKLW 535
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 104/460 (22%), Positives = 188/460 (40%), Gaps = 58/460 (12%)
Query: 178 KNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDF 237
+N ++ +A+SPD Q + + + + G + ++G S + F
Sbjct: 9 RNRLEAHSSSVRGVAFSPDGQTIASASDDKTV---KLWNRNGQLLQTLTGHSSSVWGVAF 65
Query: 238 KPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVF 297
P I + S+D T+ ++ + T HS V+ V +SP G ASA D V
Sbjct: 66 SPDGQ-TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 123
Query: 298 LYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMG 357
L++ + L+ L H V+ VA+ PDG + +AS DKT KLW+ + + + + G
Sbjct: 124 LWN-RNGQLLQTL--TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL--QTLTG 178
Query: 358 NQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTV 417
+ V+ G + + S + + N ++ + GH+ + +A SPD T+
Sbjct: 179 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSSVRGVAFSPDGQTI 236
Query: 418 FTGSHDGFITRWNAKTGENDRVQGAGHGNQINGM--KATGELLYTCGIDDTIKQVDLSSN 475
+ S D + WN + G+ + GH + +NG+ + G+ + + D T+K
Sbjct: 237 ASASDDKTVKLWN-RNGQLLQTL-TGHSSSVNGVAFRPDGQTIASASDDKTVKL------ 288
Query: 476 AYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGL 535
+ + L T+T G S + + P +
Sbjct: 289 ---------------WNRNGQLLQTLT---------GHSSSVWGVAFSP-------DGQT 317
Query: 536 VAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 595
+A D V ++ N + L + H V +FSP + + ++ + V L+
Sbjct: 318 IASASDDKTVKLWNRNGQHL--QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 375
Query: 596 FELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIW 635
L + HS+ V VA+SPD +AS S D T+ +W
Sbjct: 376 QLL---QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 412
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 90/363 (24%), Positives = 139/363 (38%), Gaps = 48/363 (13%)
Query: 12 GQPIVLGGDPKGKNFLYTNGNKYIFATLPRTQRGQPIVLGG---DPKGKNFLYTNGNSVI 68
GQ I D K NG L +T G + G P G+ + + +
Sbjct: 233 GQTIASASDDKTVKLWNRNGQ------LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTV 286
Query: 69 IRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH--------- 119
N + T HS +V +SP G IAS V++W+ N +H
Sbjct: 287 KLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQHLQTLTGHSS 345
Query: 120 -ILKNEFHPIGGPIKDI------------GTLLSL-----TSIRNILVLSIGFYIASGDI 161
+ F P G I G LL +S+R + G IAS
Sbjct: 346 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD 405
Query: 162 SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTS 221
V++W N+ L + +A+SPD+Q + + + + G
Sbjct: 406 DKTVKLW---NRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTV---KLWNRNGQL 459
Query: 222 VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYS 281
+ ++G S + F P I + S+D T+ ++ + T HS V+ V +S
Sbjct: 460 LQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS 517
Query: 282 PSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCK 341
P G ASA D V L++ + L+ L H V+ VA+ PDG + +AS DKT K
Sbjct: 518 PDGQTIASASDDKTVKLWN-RNGQLLQTL--TGHSSSVWGVAFSPDGQTIASASSDKTVK 574
Query: 342 LWD 344
LW+
Sbjct: 575 LWN 577
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 84/379 (22%), Positives = 151/379 (39%), Gaps = 33/379 (8%)
Query: 314 AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDY 373
AH V VA+ PDG + +AS DKT KLW+ + + + + G+ V+ G
Sbjct: 14 AHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSSVWGVAFSPDGQT 71
Query: 374 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 433
+ + S + + N ++ + GH+ + +A SPD T+ + S D + WN +
Sbjct: 72 IASASDDKTVKLWNRNGQ--LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RN 128
Query: 434 GENDRVQGAGHGNQINGMKAT--GELLYTCGIDDTIK------QVDLSSNAYSGPEVKLG 485
G+ + GH + + G+ + G+ + + D T+K Q+ + +S +
Sbjct: 129 GQLLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVA 187
Query: 486 SQPRGLDI-----DENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGG 540
P G I D+ + Q+ G S + + P + +A
Sbjct: 188 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP-------DGQTIASAS 240
Query: 541 ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAH 600
D V ++ N + L + H V +F P + + ++ + V L+ L
Sbjct: 241 DDKTVKLWNRNGQLL--QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLL-- 296
Query: 601 NKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQW 660
+ HS+ V VA+SPD +AS S D T+ +W+ +H+ H S
Sbjct: 297 -QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN--RNGQHLQTLTGHSSSVWGVAFS 353
Query: 661 LDNDLLVSVGQDCNTKIWE 679
D + S D K+W
Sbjct: 354 PDGQTIASASDDKTVKLWN 372
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 121/515 (23%), Positives = 185/515 (35%), Gaps = 73/515 (14%)
Query: 183 PIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRP 242
P + +S D QR + G ++ VF +ETG + EI + C F
Sbjct: 619 PHTDAVYHACFSEDGQR--IASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDR 676
Query: 243 FRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH--FASAGFDGKVFLYD 300
F I T S D + ++ + T EHS V ++ S H A+ D + L+D
Sbjct: 677 F-IATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWD 735
Query: 301 GASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDI----ETKSV-VSEFI 355
+ + + H V + PD L + S D T KLWD E KS+ V +F
Sbjct: 736 LNQKECRNTMF--GHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFF 793
Query: 356 MGNQ--VEDQQV---SCLWQGD-YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALA 409
+ + ED +V C W D + V+ I D++ + GH+ I
Sbjct: 794 LNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCD 853
Query: 410 LSPDRGTVFTGSHDGFITRWNAKTGENDRVQGA-GHGNQINGMKAT--GELLYTCGIDDT 466
SP + WN T +V GH + ++G+ + G T D T
Sbjct: 854 FSPQNHLAVVALSQYCVELWN--TDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQT 911
Query: 467 IKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVE--NGAKVSSLPIDY-- 522
I+ + + V L Q + EN ++ + V I ++ NG + IDY
Sbjct: 912 IRLWE-TKKVCKNSAVML-KQEVDVVFQENEVMVLAVDHIRRLQLING---RTGQIDYLT 966
Query: 523 --EPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLV 580
+ S L +A G + + I EL N + ++ H V F+ + L+
Sbjct: 967 EAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIF-QSRFQHKKTVWHIQFTADEKTLI 1025
Query: 581 AS--DAH--------RKVVLYR-----VPDFELAHNKE---WGF---------------- 606
+S DA K + R V DF L N W F
Sbjct: 1026 SSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEK 1085
Query: 607 ----HSAKVNCVAWSPDSALVASGSLDTTIIIWSL 637
H V S D+ +S S D T IWS
Sbjct: 1086 DFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSF 1120
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/366 (21%), Positives = 131/366 (35%), Gaps = 84/366 (22%)
Query: 84 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTS 143
H+ AV A +S G IAS ++++ E +L+ + H
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDE-------------- 665
Query: 144 IRNILVLSIGF-----YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ 198
VL F +IA+ + KV+IW+++
Sbjct: 666 -----VLCCAFSTDDRFIATCSVDKKVKIWNSM--------------------------- 693
Query: 199 RMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDF-KPSRPFRIITGSEDNTIAVF 257
TG V S+ +N C F S + TGS D + ++
Sbjct: 694 -------------------TGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLW 734
Query: 258 EGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD---------LVS 308
+ + + T H+ V R+SP AS DG + L+D SA+
Sbjct: 735 DLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFL 794
Query: 309 ELGNPAHKGGVY--AVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVS 366
L +P V +W DG +++ A+ +K L+DI T ++ E G+ Q
Sbjct: 795 NLEDPQEDMEVIVKCCSWSADGARIMVAAKNKI-FLFDIHTSGLLGEIHTGHHSTIQYCD 853
Query: 367 CLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFI 426
Q ++L V+LS + L + + + +GH + + SPD + T S D I
Sbjct: 854 FSPQ-NHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTI 912
Query: 427 TRWNAK 432
W K
Sbjct: 913 RLWETK 918
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 125/590 (21%), Positives = 216/590 (36%), Gaps = 167/590 (28%)
Query: 81 YTEHSCAVNVAKYSPSGFYI--ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTL 138
Y EHS VN ++ S ++ A+G +++WD KE +N T+
Sbjct: 701 YDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKE--CRN-------------TM 745
Query: 139 LSLTSIRNILVLS-IGFYIASGDISGKVRIWDTVN----KEHILKNEFHPIGGPIKDI-- 191
T+ N S +AS G +++WD + K +K F + P +D+
Sbjct: 746 FGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEV 805
Query: 192 -----AWSPDNQRMVVVGEGRERFGHVFMSETGTS--VGEI-SGQSKPINSCDFKPSRPF 243
+WS D R++V + + +F+ + TS +GEI +G I CDF P
Sbjct: 806 IVKCCSWSADGARIMVAAKNK-----IFLFDIHTSGLLGEIHTGHHSTIQYCDFSP---- 856
Query: 244 RIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGAS 303
Q H V +Y V L++ S
Sbjct: 857 -------------------------QNHLAVVALSQYC--------------VELWNTDS 877
Query: 304 ADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVV--SEFIMGNQV- 360
V++ H V+ V + PDG+ LT+S D+T +LW ETK V S ++ +V
Sbjct: 878 RSKVADC--RGHLSWVHGVMFSPDGSSFLTSSDDQTIRLW--ETKKVCKNSAVMLKQEVD 933
Query: 361 ---EDQQVSCLW---------------QGDYLL-----TVSLSGFISYLDVNNPSTPIRV 397
++ +V L Q DYL LS + Y+ + + I +
Sbjct: 934 VVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEI 993
Query: 398 IK-----------GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGN 446
++ H K + + + D T+ + S D I WN + + ++G H
Sbjct: 994 LELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRG--HQE 1051
Query: 447 QINGMKA-TGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQ 505
+ + L + D T+K ++ + G++ + + T+++
Sbjct: 1052 TVKDFRLLKNSRLLSWSFDGTVKVWNIIT----------GNKEKDFVCHQGTVLSC---- 1097
Query: 506 ISIVENGAKVSSLPIDYEPSSISLD-----HE----------------HGLVAVGGADSK 544
I + K SS D S D HE L+A G + +
Sbjct: 1098 -DISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGE 1156
Query: 545 VHIYELNNKSL-------SPKAELDHLGPVTDCSFSPSNEYLVASDAHRK 587
+ I+ ++N L S + H G VTD FSP + L+++ + K
Sbjct: 1157 IRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIK 1206
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 82/380 (21%), Positives = 142/380 (37%), Gaps = 73/380 (19%)
Query: 265 KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW 324
++ + H+ V +S G AS G D + ++ + + + E+ AH+ V A+
Sbjct: 614 RLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEI--KAHEDEVLCCAF 671
Query: 325 KPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFIS 384
D + T S DK K+W+ S+ E + +QV+C
Sbjct: 672 STDDRFIATCSVDKKVKIWN----SMTGELVHTYDEHSEQVNCC---------------- 711
Query: 385 YLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGH 444
N S + + TGS D F+ W+ E R GH
Sbjct: 712 --HFTNSSHHLLLA--------------------TGSSDCFLKLWDLNQKEC-RNTMFGH 748
Query: 445 GNQINGMKAT--GELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVT 502
N +N + + +LL +C D T+K D +S A + + L+ D + V
Sbjct: 749 TNSVNHCRFSPDDKLLASCSADGTLKLWDATS-ANERKSINVKQFFLNLE-DPQEDMEVI 806
Query: 503 VKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD 562
VK S +GA++ +VA A +K+ +++++ L +
Sbjct: 807 VKCCSWSADGARI-------------------MVA---AKNKIFLFDIHTSGLLGEIHTG 844
Query: 563 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSAL 622
H + C FSP N V + + V L+ + + H + V+ V +SPD +
Sbjct: 845 HHSTIQYCDFSPQNHLAVVALSQYCVELWNTD--SRSKVADCRGHLSWVHGVMFSPDGSS 902
Query: 623 VASGSLDTTIIIWSLASPAK 642
+ S D TI +W K
Sbjct: 903 FLTSSDDQTIRLWETKKVCK 922
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 72/428 (16%), Positives = 149/428 (34%), Gaps = 76/428 (17%)
Query: 33 KYIFATLPRTQRGQPIVLGG---DPKGKNFLYTNGNSVIIRNIENPAI-SDIYTEHSCAV 88
K F L Q +++ G + N + + +I + +I+T H +
Sbjct: 790 KQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTI 849
Query: 89 NVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNIL 148
+SP V +W+T ++ + H L+ + ++
Sbjct: 850 QYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGH--------------LSWVHGVM 895
Query: 149 VLSIGFYIASGDISGKVRIWDTV----NKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVG 204
G + +R+W+T N +LK E + + + + D+ R + +
Sbjct: 896 FSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLI 955
Query: 205 EGRERFGHVFMSETGTSVGEISGQSKP-INSCDFKPSRPFRIITGSEDNTIAVFEGPPFK 263
GR G+I ++ ++ C P + I G E+ I + E +
Sbjct: 956 NGR--------------TGQIDYLTEAQVSCCCLSPHLQY-IAFGDENGAIEILELVNNR 1000
Query: 264 FKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVA 323
++ +H + V ++++ S+ D ++ +++ + G+ +
Sbjct: 1001 IFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLK 1060
Query: 324 WKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMG----------------NQVEDQQVSC 367
++LL+ S D T K+W+I T + +F+ + + +
Sbjct: 1061 ----NSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAK 1116
Query: 368 LWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFIT 427
+W D LL P+ ++GHN + A S D + TG +G I
Sbjct: 1117 IWSFDLLL------------------PLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIR 1158
Query: 428 RWNAKTGE 435
WN GE
Sbjct: 1159 IWNVSNGE 1166
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 111/270 (41%), Gaps = 37/270 (13%)
Query: 88 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNI 147
V+ SP YIA GD +G + I + VN I ++ F K + T+
Sbjct: 970 VSCCCLSPHLQYIAFGDENGAIEILELVNNR-IFQSRFQH-----KKTVWHIQFTADEKT 1023
Query: 148 LVLSIGFYIASGDISGKVRIWD-TVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG 206
L I+S D ++++W+ ++K L+ +KD +++ + +G
Sbjct: 1024 L-------ISSSD-DAEIQVWNWQLDKCIFLRGH----QETVKDFRLLKNSRLLSWSFDG 1071
Query: 207 RERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM 266
+ ++ TG + + SCD + + S D T ++ F +
Sbjct: 1072 TVKVWNII---TGNKEKDFVCHQGTVLSCDISHDAT-KFSSTSADKTAKIW---SFDLLL 1124
Query: 267 TKQE---HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLV------SELGNPAHKG 317
E H+ V+ +S + A+ +G++ +++ ++ +L+ SE G H G
Sbjct: 1125 PLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGG 1184
Query: 318 GVYAVAWKPDGTQLLTASGDKTCKLWDIET 347
V + + PDG L++A G K W++ T
Sbjct: 1185 WVTDLCFSPDGKMLISAGG--YIKWWNVVT 1212
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 563 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSAL 622
H G V C S ++ A + ++ D L ++ G H+ V C A+S DS L
Sbjct: 1090 HQGTVLSCDISHDATKFSSTSADKTAKIWSF-DLLLPLHELRG-HNGCVRCSAFSVDSTL 1147
Query: 623 VASGSLDTTIIIWSLAS 639
+A+G + I IW++++
Sbjct: 1148 LATGDDNGEIRIWNVSN 1164
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 12/195 (6%)
Query: 153 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGH 212
G ++AS ++IW + + H +G I D+AWS D+ +V + +
Sbjct: 34 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSNLLVSASDDKTL--K 89
Query: 213 VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS 272
++ +G + + G S + C+F P I++GS D ++ +++ K T HS
Sbjct: 90 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHS 148
Query: 273 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL---GNPAHKGGVYAVAWKPDGT 329
V AV ++ GS S+ +DG ++D AS + L NP V V + P+G
Sbjct: 149 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP----VSFVKFSPNGK 204
Query: 330 QLLTASGDKTCKLWD 344
+L A+ D T KLWD
Sbjct: 205 YILAATLDNTLKLWD 219
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 18/222 (8%)
Query: 260 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 316
P + K T H++ V +V++SP+G AS+ D + + YDG +S HK
Sbjct: 10 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 64
Query: 317 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW---QGDY 373
G+ VAW D L++AS DKT K+WD+ + + + V C Q +
Sbjct: 65 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNL 120
Query: 374 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 433
+++ S + DV ++ + H+ P++A+ + D + + S+DG W+ +
Sbjct: 121 IVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 179
Query: 434 GENDRVQGAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLS 473
G+ + ++ +K + G+ + +D+T+K D S
Sbjct: 180 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 221
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 21/127 (16%)
Query: 563 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSAL 622
H V+ FSP+ E+L +S A + + ++ D + K H ++ VAWS DS L
Sbjct: 21 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSDSNL 78
Query: 623 VASGSLDTTIIIWSLAS---------PAKHIIIKNAHPQSQITRLQWLDNDLLVSVGQDC 673
+ S S D T+ IW ++S + ++ N +PQS +L+VS D
Sbjct: 79 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----------NLIVSGSFDE 128
Query: 674 NTKIWEI 680
+ +IW++
Sbjct: 129 SVRIWDV 135
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/314 (21%), Positives = 126/314 (40%), Gaps = 39/314 (12%)
Query: 392 STPIR-------VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDR-VQGAG 443
STP++ + GH K ++++ SP+ + + S D I W A G+ ++ + G
Sbjct: 5 STPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 64
Query: 444 HGNQINGMKATGELLYTCGIDDTIKQVDLSS-------NAYSGPEVKLGSQPRGLDIDEN 496
G + LL + D T+K D+SS +S P+ N
Sbjct: 65 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-----SN 119
Query: 497 TLVTVTVKQ---ISIVENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNN 552
+V+ + + I V+ G + +LP +P S++ + + L+ D I++ +
Sbjct: 120 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 179
Query: 553 KSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVN 612
D PV+ FSP+ +Y++A+ + L+ + K + H +
Sbjct: 180 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL--KTYTGHKNEKY 237
Query: 613 CVAWS---PDSALVASGSLDTTIIIWSLASPA--------KHIIIKNA-HPQSQITRLQW 660
C+ + + SGS D + IW+L + ++I A HP I
Sbjct: 238 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 297
Query: 661 LDNDLLVSVGQ-DC 673
L+ND + + + DC
Sbjct: 298 LENDKTIKLWKSDC 311
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 607 HSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWL-DNDL 665
H+ V+ V +SP+ +AS S D I IW A K + H + I+ + W D++L
Sbjct: 21 HTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGH-KLGISDVAWSSDSNL 78
Query: 666 LVSVGQDCNTKIWEIA 681
LVS D KIW+++
Sbjct: 79 LVSASDDKTLKIWDVS 94
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 12/195 (6%)
Query: 153 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGH 212
G ++AS ++IW + + H +G I D+AWS D+ +V + +
Sbjct: 35 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSNLLVSASDDKTL--K 90
Query: 213 VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS 272
++ +G + + G S + C+F P I++GS D ++ +++ K T HS
Sbjct: 91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHS 149
Query: 273 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL---GNPAHKGGVYAVAWKPDGT 329
V AV ++ GS S+ +DG ++D AS + L NP V V + P+G
Sbjct: 150 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP----VSFVKFSPNGK 205
Query: 330 QLLTASGDKTCKLWD 344
+L A+ D T KLWD
Sbjct: 206 YILAATLDNTLKLWD 220
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 18/222 (8%)
Query: 260 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 316
P + K T H++ V +V++SP+G AS+ D + + YDG +S HK
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 65
Query: 317 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW---QGDY 373
G+ VAW D L++AS DKT K+WD+ + + + V C Q +
Sbjct: 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNL 121
Query: 374 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 433
+++ S + DV ++ + H+ P++A+ + D + + S+DG W+ +
Sbjct: 122 IVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 434 GENDRVQGAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLS 473
G+ + ++ +K + G+ + +D+T+K D S
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 21/127 (16%)
Query: 563 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSAL 622
H V+ FSP+ E+L +S A + + ++ D + K H ++ VAWS DS L
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSDSNL 79
Query: 623 VASGSLDTTIIIWSLAS---------PAKHIIIKNAHPQSQITRLQWLDNDLLVSVGQDC 673
+ S S D T+ IW ++S + ++ N +PQS +L+VS D
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----------NLIVSGSFDE 129
Query: 674 NTKIWEI 680
+ +IW++
Sbjct: 130 SVRIWDV 136
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 121/302 (40%), Gaps = 32/302 (10%)
Query: 397 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDR-VQGAGHGNQINGMKATG 455
+ GH K ++++ SP+ + + S D I W A G+ ++ + G G +
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 456 ELLYTCGIDDTIKQVDLSS-------NAYSGPEVKLGSQPRGLDIDENTLVTVTVKQ--- 505
LL + D T+K D+SS +S P+ N +V+ + +
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-----SNLIVSGSFDESVR 132
Query: 506 ISIVENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHL 564
I V+ G + +LP +P S++ + + L+ D I++ + D
Sbjct: 133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 192
Query: 565 GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWS---PDSA 621
PV+ FSP+ +Y++A+ + L+ + K + H + C+ +
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL--KTYTGHKNEKYCIFANFSVTGGK 250
Query: 622 LVASGSLDTTIIIWSLASPA--------KHIIIKNA-HPQSQITRLQWLDNDLLVSVGQ- 671
+ SGS D + IW+L + ++I A HP I L+ND + + +
Sbjct: 251 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310
Query: 672 DC 673
DC
Sbjct: 311 DC 312
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 607 HSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWL-DNDL 665
H+ V+ V +SP+ +AS S D I IW A K + H + I+ + W D++L
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGH-KLGISDVAWSSDSNL 79
Query: 666 LVSVGQDCNTKIWEIA 681
LVS D KIW+++
Sbjct: 80 LVSASDDKTLKIWDVS 95
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 12/195 (6%)
Query: 153 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGH 212
G ++AS ++IW + + H +G I D+AWS D+ +V + +
Sbjct: 31 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSNLLVSASDDKTL--K 86
Query: 213 VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS 272
++ +G + + G S + C+F P I++GS D ++ +++ K T HS
Sbjct: 87 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHS 145
Query: 273 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL---GNPAHKGGVYAVAWKPDGT 329
V AV ++ GS S+ +DG ++D AS + L NP V V + P+G
Sbjct: 146 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP----VSFVKFSPNGK 201
Query: 330 QLLTASGDKTCKLWD 344
+L A+ D T KLWD
Sbjct: 202 YILAATLDNTLKLWD 216
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 18/222 (8%)
Query: 260 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 316
P + K T H++ V +V++SP+G AS+ D + + YDG +S HK
Sbjct: 7 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 61
Query: 317 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW---QGDY 373
G+ VAW D L++AS DKT K+WD+ + + + V C Q +
Sbjct: 62 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNL 117
Query: 374 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 433
+++ S + DV ++ + H+ P++A+ + D + + S+DG W+ +
Sbjct: 118 IVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 176
Query: 434 GENDRVQGAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLS 473
G+ + ++ +K + G+ + +D+T+K D S
Sbjct: 177 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 218
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 21/127 (16%)
Query: 563 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSAL 622
H V+ FSP+ E+L +S A + + ++ D + K H ++ VAWS DS L
Sbjct: 18 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSDSNL 75
Query: 623 VASGSLDTTIIIWSLAS---------PAKHIIIKNAHPQSQITRLQWLDNDLLVSVGQDC 673
+ S S D T+ IW ++S + ++ N +PQS +L+VS D
Sbjct: 76 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----------NLIVSGSFDE 125
Query: 674 NTKIWEI 680
+ +IW++
Sbjct: 126 SVRIWDV 132
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 121/302 (40%), Gaps = 32/302 (10%)
Query: 397 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDR-VQGAGHGNQINGMKATG 455
+ GH K ++++ SP+ + + S D I W A G+ ++ + G G +
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 456 ELLYTCGIDDTIKQVDLSS-------NAYSGPEVKLGSQPRGLDIDENTLVTVTVKQ--- 505
LL + D T+K D+SS +S P+ N +V+ + +
Sbjct: 74 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-----SNLIVSGSFDESVR 128
Query: 506 ISIVENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHL 564
I V+ G + +LP +P S++ + + L+ D I++ + D
Sbjct: 129 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 188
Query: 565 GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWS---PDSA 621
PV+ FSP+ +Y++A+ + L+ + K + H + C+ +
Sbjct: 189 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL--KTYTGHKNEKYCIFANFSVTGGK 246
Query: 622 LVASGSLDTTIIIWSLASPA--------KHIIIKNA-HPQSQITRLQWLDNDLLVSVGQ- 671
+ SGS D + IW+L + ++I A HP I L+ND + + +
Sbjct: 247 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 306
Query: 672 DC 673
DC
Sbjct: 307 DC 308
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 607 HSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWL-DNDL 665
H+ V+ V +SP+ +AS S D I IW A K + H + I+ + W D++L
Sbjct: 18 HTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGH-KLGISDVAWSSDSNL 75
Query: 666 LVSVGQDCNTKIWEIA 681
LVS D KIW+++
Sbjct: 76 LVSASDDKTLKIWDVS 91
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 12/195 (6%)
Query: 153 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGH 212
G ++AS ++IW + + H +G I D+AWS D+ +V + +
Sbjct: 35 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSNLLVSASDDKTL--K 90
Query: 213 VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS 272
++ +G + + G S + C+F P I++GS D ++ +++ K T HS
Sbjct: 91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHS 149
Query: 273 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL---GNPAHKGGVYAVAWKPDGT 329
V AV ++ GS S+ +DG ++D AS + L NP V V + P+G
Sbjct: 150 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP----VSFVKFSPNGK 205
Query: 330 QLLTASGDKTCKLWD 344
+L A+ D T KLWD
Sbjct: 206 YILAATLDNTLKLWD 220
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 18/222 (8%)
Query: 260 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 316
P + K T H++ V +V++SP+G AS+ D + + YDG +S HK
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 65
Query: 317 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW---QGDY 373
G+ VAW D L++AS DKT K+WD+ + + + V C Q +
Sbjct: 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNL 121
Query: 374 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 433
+++ S + DV ++ + H+ P++A+ + D + + S+DG W+ +
Sbjct: 122 IVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 434 GENDRVQGAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLS 473
G+ + ++ +K + G+ + +D+T+K D S
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 21/127 (16%)
Query: 563 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSAL 622
H V+ FSP+ E+L +S A + + ++ D + K H ++ VAWS DS L
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSDSNL 79
Query: 623 VASGSLDTTIIIWSLAS---------PAKHIIIKNAHPQSQITRLQWLDNDLLVSVGQDC 673
+ S S D T+ IW ++S + ++ N +PQS +L+VS D
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----------NLIVSGSFDE 129
Query: 674 NTKIWEI 680
+ +IW++
Sbjct: 130 SVRIWDV 136
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 121/302 (40%), Gaps = 32/302 (10%)
Query: 397 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDR-VQGAGHGNQINGMKATG 455
+ GH K ++++ SP+ + + S D I W A G+ ++ + G G +
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 456 ELLYTCGIDDTIKQVDLSS-------NAYSGPEVKLGSQPRGLDIDENTLVTVTVKQ--- 505
LL + D T+K D+SS +S P+ N +V+ + +
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-----SNLIVSGSFDESVR 132
Query: 506 ISIVENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHL 564
I V+ G + +LP +P S++ + + L+ D I++ + D
Sbjct: 133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 192
Query: 565 GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWS---PDSA 621
PV+ FSP+ +Y++A+ + L+ + K + H + C+ +
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL--KTYTGHKNEKYCIFANFSVTGGK 250
Query: 622 LVASGSLDTTIIIWSLASPA--------KHIIIKNA-HPQSQITRLQWLDNDLLVSVGQ- 671
+ SGS D + IW+L + ++I A HP I L+ND + + +
Sbjct: 251 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310
Query: 672 DC 673
DC
Sbjct: 311 DC 312
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 607 HSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWL-DNDL 665
H+ V+ V +SP+ +AS S D I IW A K + H + I+ + W D++L
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGH-KLGISDVAWSSDSNL 79
Query: 666 LVSVGQDCNTKIWEIA 681
LVS D KIW+++
Sbjct: 80 LVSASDDKTLKIWDVS 95
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 12/195 (6%)
Query: 153 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGH 212
G ++AS ++IW + + H +G I D+AWS D+ +V + +
Sbjct: 36 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSNLLVSASDDKTL--K 91
Query: 213 VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS 272
++ +G + + G S + C+F P I++GS D ++ +++ K T HS
Sbjct: 92 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHS 150
Query: 273 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL---GNPAHKGGVYAVAWKPDGT 329
V AV ++ GS S+ +DG ++D AS + L NP V V + P+G
Sbjct: 151 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP----VSFVKFSPNGK 206
Query: 330 QLLTASGDKTCKLWD 344
+L A+ D T KLWD
Sbjct: 207 YILAATLDNTLKLWD 221
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 18/222 (8%)
Query: 260 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 316
P + K T H++ V +V++SP+G AS+ D + + YDG +S HK
Sbjct: 12 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 66
Query: 317 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW---QGDY 373
G+ VAW D L++AS DKT K+WD+ + + + V C Q +
Sbjct: 67 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNL 122
Query: 374 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 433
+++ S + DV ++ + H+ P++A+ + D + + S+DG W+ +
Sbjct: 123 IVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 181
Query: 434 GENDRVQGAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLS 473
G+ + ++ +K + G+ + +D+T+K D S
Sbjct: 182 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 223
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 21/127 (16%)
Query: 563 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSAL 622
H V+ FSP+ E+L +S A + + ++ D + K H ++ VAWS DS L
Sbjct: 23 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSDSNL 80
Query: 623 VASGSLDTTIIIWSLAS---------PAKHIIIKNAHPQSQITRLQWLDNDLLVSVGQDC 673
+ S S D T+ IW ++S + ++ N +PQS +L+VS D
Sbjct: 81 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----------NLIVSGSFDE 130
Query: 674 NTKIWEI 680
+ +IW++
Sbjct: 131 SVRIWDV 137
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 121/302 (40%), Gaps = 32/302 (10%)
Query: 397 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDR-VQGAGHGNQINGMKATG 455
+ GH K ++++ SP+ + + S D I W A G+ ++ + G G +
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 456 ELLYTCGIDDTIKQVDLSS-------NAYSGPEVKLGSQPRGLDIDENTLVTVTVKQ--- 505
LL + D T+K D+SS +S P+ N +V+ + +
Sbjct: 79 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-----SNLIVSGSFDESVR 133
Query: 506 ISIVENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHL 564
I V+ G + +LP +P S++ + + L+ D I++ + D
Sbjct: 134 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 193
Query: 565 GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWS---PDSA 621
PV+ FSP+ +Y++A+ + L+ + K + H + C+ +
Sbjct: 194 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL--KTYTGHKNEKYCIFANFSVTGGK 251
Query: 622 LVASGSLDTTIIIWSLASPA--------KHIIIKNA-HPQSQITRLQWLDNDLLVSVGQ- 671
+ SGS D + IW+L + ++I A HP I L+ND + + +
Sbjct: 252 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 311
Query: 672 DC 673
DC
Sbjct: 312 DC 313
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 607 HSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWL-DNDL 665
H+ V+ V +SP+ +AS S D I IW A K + H + I+ + W D++L
Sbjct: 23 HTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGH-KLGISDVAWSSDSNL 80
Query: 666 LVSVGQDCNTKIWEIA 681
LVS D KIW+++
Sbjct: 81 LVSASDDKTLKIWDVS 96
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 12/195 (6%)
Query: 153 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGH 212
G ++AS ++IW + + H +G I D+AWS D+ +V + +
Sbjct: 41 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSNLLVSASDDKTL--K 96
Query: 213 VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS 272
++ +G + + G S + C+F P I++GS D ++ +++ K T HS
Sbjct: 97 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 273 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL---GNPAHKGGVYAVAWKPDGT 329
V AV ++ GS S+ +DG ++D AS + L NP V V + P+G
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP----VSFVKFSPNGK 211
Query: 330 QLLTASGDKTCKLWD 344
+L A+ D T KLWD
Sbjct: 212 YILAATLDNTLKLWD 226
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 18/222 (8%)
Query: 260 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 316
P + K T H++ V +V++SP+G AS+ D + + YDG +S HK
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 71
Query: 317 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW---QGDY 373
G+ VAW D L++AS DKT K+WD+ + + + V C Q +
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNL 127
Query: 374 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 433
+++ S + DV ++ + H+ P++A+ + D + + S+DG W+ +
Sbjct: 128 IVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 434 GENDRVQGAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLS 473
G+ + ++ +K + G+ + +D+T+K D S
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 21/127 (16%)
Query: 563 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSAL 622
H V+ FSP+ E+L +S A + + ++ D + K H ++ VAWS DS L
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSDSNL 85
Query: 623 VASGSLDTTIIIWSLAS---------PAKHIIIKNAHPQSQITRLQWLDNDLLVSVGQDC 673
+ S S D T+ IW ++S + ++ N +PQS +L+VS D
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----------NLIVSGSFDE 135
Query: 674 NTKIWEI 680
+ +IW++
Sbjct: 136 SVRIWDV 142
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 121/302 (40%), Gaps = 32/302 (10%)
Query: 397 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDR-VQGAGHGNQINGMKATG 455
+ GH K ++++ SP+ + + S D I W A G+ ++ + G G +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 456 ELLYTCGIDDTIKQVDLSS-------NAYSGPEVKLGSQPRGLDIDENTLVTVTVKQ--- 505
LL + D T+K D+SS +S P+ N +V+ + +
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-----SNLIVSGSFDESVR 138
Query: 506 ISIVENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHL 564
I V+ G + +LP +P S++ + + L+ D I++ + D
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 565 GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWS---PDSA 621
PV+ FSP+ +Y++A+ + L+ + K + H + C+ +
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL--KTYTGHKNEKYCIFANFSVTGGK 256
Query: 622 LVASGSLDTTIIIWSLASPA--------KHIIIKNA-HPQSQITRLQWLDNDLLVSVGQ- 671
+ SGS D + IW+L + ++I A HP I L+ND + + +
Sbjct: 257 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 316
Query: 672 DC 673
DC
Sbjct: 317 DC 318
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 607 HSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWL-DNDL 665
H+ V+ V +SP+ +AS S D I IW A K + H + I+ + W D++L
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGH-KLGISDVAWSSDSNL 85
Query: 666 LVSVGQDCNTKIWEIA 681
LVS D KIW+++
Sbjct: 86 LVSASDDKTLKIWDVS 101
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 126/287 (43%), Gaps = 19/287 (6%)
Query: 153 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGH 212
G ++AS ++IW + + H +G I D+AWS D+ +V + +
Sbjct: 41 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSNLLVSASDDKTL--K 96
Query: 213 VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS 272
++ +G + + G S + C+F P I++GS D ++ +++ K T HS
Sbjct: 97 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 273 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL---GNPAHKGGVYAVAWKPDGT 329
V AV ++ GS S+ +DG ++D AS + L NP V V + P+G
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP----VSFVKFSPNGK 211
Query: 330 QLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQ---GDYLLTVSLSGFISYL 386
+L A+ D T KLWD + + G++ E + + G ++++ S +
Sbjct: 212 YILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 387 DVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS--HDGFITRWNA 431
++ ++ ++GH + + A P + + + +D I W +
Sbjct: 271 NLQTKEI-VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 316
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 18/222 (8%)
Query: 260 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 316
P + K T H++ V +V++SP+G AS+ D + + YDG +S HK
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 71
Query: 317 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW---QGDY 373
G+ VAW D L++AS DKT K+WD+ + + + V C Q +
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNL 127
Query: 374 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 433
+++ S + DV ++ + H+ P++A+ + D + + S+DG W+ +
Sbjct: 128 IVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 434 GENDRVQGAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLS 473
G+ + ++ +K + G+ + +D+T+K D S
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 21/127 (16%)
Query: 563 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSAL 622
H V+ FSP+ E+L +S A + + ++ D + K H ++ VAWS DS L
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSDSNL 85
Query: 623 VASGSLDTTIIIWSLAS---------PAKHIIIKNAHPQSQITRLQWLDNDLLVSVGQDC 673
+ S S D T+ IW ++S + ++ N +PQS +L+VS D
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----------NLIVSGSFDE 135
Query: 674 NTKIWEI 680
+ +IW++
Sbjct: 136 SVRIWDV 142
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 121/302 (40%), Gaps = 32/302 (10%)
Query: 397 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDR-VQGAGHGNQINGMKATG 455
+ GH K ++++ SP+ + + S D I W A G+ ++ + G G +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 456 ELLYTCGIDDTIKQVDLSS-------NAYSGPEVKLGSQPRGLDIDENTLVTVTVKQ--- 505
LL + D T+K D+SS +S P+ N +V+ + +
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-----SNLIVSGSFDESVR 138
Query: 506 ISIVENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHL 564
I V+ G + +LP +P S++ + + L+ D I++ + D
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 565 GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWS---PDSA 621
PV+ FSP+ +Y++A+ + L+ + K + H + C+ +
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL--KTYTGHKNEKYCIFANFSVTGGK 256
Query: 622 LVASGSLDTTIIIWSLASPA--------KHIIIKNA-HPQSQITRLQWLDNDLLVSVGQ- 671
+ SGS D + IW+L + ++I A HP I L+ND + + +
Sbjct: 257 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 316
Query: 672 DC 673
DC
Sbjct: 317 DC 318
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 607 HSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWL-DNDL 665
H+ V+ V +SP+ +AS S D I IW A K + H + I+ + W D++L
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGH-KLGISDVAWSSDSNL 85
Query: 666 LVSVGQDCNTKIWEIA 681
LVS D KIW+++
Sbjct: 86 LVSASDDKTLKIWDVS 101
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 12/195 (6%)
Query: 153 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGH 212
G ++AS ++IW + + H +G I D+AWS D+ +V + +
Sbjct: 41 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSNLLVSASDDKTL--K 96
Query: 213 VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS 272
++ +G + + G S + C+F P I++GS D ++ +++ K T HS
Sbjct: 97 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 273 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL---GNPAHKGGVYAVAWKPDGT 329
V AV ++ GS S+ +DG ++D AS + L NP V V + P+G
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP----VSFVKFSPNGK 211
Query: 330 QLLTASGDKTCKLWD 344
+L A+ D T KLWD
Sbjct: 212 YILAATLDNTLKLWD 226
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 18/222 (8%)
Query: 260 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 316
P + K T H++ V +V++SP+G AS+ D + + YDG +S HK
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 71
Query: 317 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW---QGDY 373
G+ VAW D L++AS DKT K+WD+ + + + V C Q +
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNL 127
Query: 374 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 433
+++ S + DV ++ + H+ P++A+ + D + + S+DG W+ +
Sbjct: 128 IVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 434 GENDRVQGAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLS 473
G+ + ++ +K + G+ + +D+T+K D S
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 21/127 (16%)
Query: 563 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSAL 622
H V+ FSP+ E+L +S A + + ++ D + K H ++ VAWS DS L
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSDSNL 85
Query: 623 VASGSLDTTIIIWSLAS---------PAKHIIIKNAHPQSQITRLQWLDNDLLVSVGQDC 673
+ S S D T+ IW ++S + ++ N +PQS +L+VS D
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----------NLIVSGSFDE 135
Query: 674 NTKIWEI 680
+ +IW++
Sbjct: 136 SVRIWDV 142
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 121/302 (40%), Gaps = 32/302 (10%)
Query: 397 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDR-VQGAGHGNQINGMKATG 455
+ GH K ++++ SP+ + + S D I W A G+ ++ + G G +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 456 ELLYTCGIDDTIKQVDLSS-------NAYSGPEVKLGSQPRGLDIDENTLVTVTVKQ--- 505
LL + D T+K D+SS +S P+ N +V+ + +
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-----SNLIVSGSFDESVR 138
Query: 506 ISIVENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHL 564
I V+ G + +LP +P S++ + + L+ D I++ + D
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 565 GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWS---PDSA 621
PV+ FSP+ +Y++A+ + L+ + K + H + C+ +
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL--KTYTGHKNEKYCIFANFSVTGGK 256
Query: 622 LVASGSLDTTIIIWSLASPA--------KHIIIKNA-HPQSQITRLQWLDNDLLVSVGQ- 671
+ SGS D + IW+L + ++I A HP I L+ND + + +
Sbjct: 257 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 316
Query: 672 DC 673
DC
Sbjct: 317 DC 318
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 607 HSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWL-DNDL 665
H+ V+ V +SP+ +AS S D I IW A K + H + I+ + W D++L
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGH-KLGISDVAWSSDSNL 85
Query: 666 LVSVGQDCNTKIWEIA 681
LVS D KIW+++
Sbjct: 86 LVSASDDKTLKIWDVS 101
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 12/195 (6%)
Query: 153 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGH 212
G ++AS ++IW + + H +G I D+AWS D+ +V + +
Sbjct: 52 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSNLLVSASDDKTL--K 107
Query: 213 VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS 272
++ +G + + G S + C+F P I++GS D ++ +++ K T HS
Sbjct: 108 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHS 166
Query: 273 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL---GNPAHKGGVYAVAWKPDGT 329
V AV ++ GS S+ +DG ++D AS + L NP V V + P+G
Sbjct: 167 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP----VSFVKFSPNGK 222
Query: 330 QLLTASGDKTCKLWD 344
+L A+ D T KLWD
Sbjct: 223 YILAATLDNTLKLWD 237
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 18/222 (8%)
Query: 260 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 316
P + K T H++ V +V++SP+G AS+ D + + YDG +S HK
Sbjct: 28 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 82
Query: 317 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW---QGDY 373
G+ VAW D L++AS DKT K+WD+ + + + V C Q +
Sbjct: 83 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNL 138
Query: 374 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 433
+++ S + DV ++ + H+ P++A+ + D + + S+DG W+ +
Sbjct: 139 IVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 197
Query: 434 GENDRVQGAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLS 473
G+ + ++ +K + G+ + +D+T+K D S
Sbjct: 198 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 239
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 21/127 (16%)
Query: 563 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSAL 622
H V+ FSP+ E+L +S A + + ++ D + K H ++ VAWS DS L
Sbjct: 39 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSDSNL 96
Query: 623 VASGSLDTTIIIWSLAS---------PAKHIIIKNAHPQSQITRLQWLDNDLLVSVGQDC 673
+ S S D T+ IW ++S + ++ N +PQS +L+VS D
Sbjct: 97 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----------NLIVSGSFDE 146
Query: 674 NTKIWEI 680
+ +IW++
Sbjct: 147 SVRIWDV 153
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 121/302 (40%), Gaps = 32/302 (10%)
Query: 397 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDR-VQGAGHGNQINGMKATG 455
+ GH K ++++ SP+ + + S D I W A G+ ++ + G G +
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 456 ELLYTCGIDDTIKQVDLSS-------NAYSGPEVKLGSQPRGLDIDENTLVTVTVKQ--- 505
LL + D T+K D+SS +S P+ N +V+ + +
Sbjct: 95 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-----SNLIVSGSFDESVR 149
Query: 506 ISIVENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHL 564
I V+ G + +LP +P S++ + + L+ D I++ + D
Sbjct: 150 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 209
Query: 565 GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWS---PDSA 621
PV+ FSP+ +Y++A+ + L+ + K + H + C+ +
Sbjct: 210 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL--KTYTGHKNEKYCIFANFSVTGGK 267
Query: 622 LVASGSLDTTIIIWSLASPA--------KHIIIKNA-HPQSQITRLQWLDNDLLVSVGQ- 671
+ SGS D + IW+L + ++I A HP I L+ND + + +
Sbjct: 268 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 327
Query: 672 DC 673
DC
Sbjct: 328 DC 329
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 607 HSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWL-DNDL 665
H+ V+ V +SP+ +AS S D I IW A K + H + I+ + W D++L
Sbjct: 39 HTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGH-KLGISDVAWSSDSNL 96
Query: 666 LVSVGQDCNTKIWEIA 681
LVS D KIW+++
Sbjct: 97 LVSASDDKTLKIWDVS 112
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 12/195 (6%)
Query: 153 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGH 212
G ++AS ++IW + + H +G I D+AWS D+ +V + +
Sbjct: 40 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSNLLVSASDDKTL--K 95
Query: 213 VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS 272
++ +G + + G S + C+F P I++GS D ++ +++ K T HS
Sbjct: 96 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHS 154
Query: 273 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL---GNPAHKGGVYAVAWKPDGT 329
V AV ++ GS S+ +DG ++D AS + L NP V V + P+G
Sbjct: 155 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP----VSFVKFSPNGK 210
Query: 330 QLLTASGDKTCKLWD 344
+L A+ D T KLWD
Sbjct: 211 YILAATLDNTLKLWD 225
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 18/222 (8%)
Query: 260 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 316
P + K T H++ V +V++SP+G AS+ D + + YDG +S HK
Sbjct: 16 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 70
Query: 317 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW---QGDY 373
G+ VAW D L++AS DKT K+WD+ + + + V C Q +
Sbjct: 71 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNL 126
Query: 374 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 433
+++ S + DV ++ + H+ P++A+ + D + + S+DG W+ +
Sbjct: 127 IVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 185
Query: 434 GENDRVQGAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLS 473
G+ + ++ +K + G+ + +D+T+K D S
Sbjct: 186 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 227
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 21/127 (16%)
Query: 563 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSAL 622
H V+ FSP+ E+L +S A + + ++ D + K H ++ VAWS DS L
Sbjct: 27 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSDSNL 84
Query: 623 VASGSLDTTIIIWSLAS---------PAKHIIIKNAHPQSQITRLQWLDNDLLVSVGQDC 673
+ S S D T+ IW ++S + ++ N +PQS +L+VS D
Sbjct: 85 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----------NLIVSGSFDE 134
Query: 674 NTKIWEI 680
+ +IW++
Sbjct: 135 SVRIWDV 141
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 121/302 (40%), Gaps = 32/302 (10%)
Query: 397 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDR-VQGAGHGNQINGMKATG 455
+ GH K ++++ SP+ + + S D I W A G+ ++ + G G +
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 456 ELLYTCGIDDTIKQVDLSS-------NAYSGPEVKLGSQPRGLDIDENTLVTVTVKQ--- 505
LL + D T+K D+SS +S P+ N +V+ + +
Sbjct: 83 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-----SNLIVSGSFDESVR 137
Query: 506 ISIVENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHL 564
I V+ G + +LP +P S++ + + L+ D I++ + D
Sbjct: 138 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 197
Query: 565 GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWS---PDSA 621
PV+ FSP+ +Y++A+ + L+ + K + H + C+ +
Sbjct: 198 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL--KTYTGHKNEKYCIFANFSVTGGK 255
Query: 622 LVASGSLDTTIIIWSLASPA--------KHIIIKNA-HPQSQITRLQWLDNDLLVSVGQ- 671
+ SGS D + IW+L + ++I A HP I L+ND + + +
Sbjct: 256 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 315
Query: 672 DC 673
DC
Sbjct: 316 DC 317
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 607 HSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWL-DNDL 665
H+ V+ V +SP+ +AS S D I IW A K + H + I+ + W D++L
Sbjct: 27 HTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGH-KLGISDVAWSSDSNL 84
Query: 666 LVSVGQDCNTKIWEIA 681
LVS D KIW+++
Sbjct: 85 LVSASDDKTLKIWDVS 100
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 12/195 (6%)
Query: 153 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGH 212
G ++AS ++IW + + H +G I D+AWS D+ +V + +
Sbjct: 38 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSNLLVSASDDKTL--K 93
Query: 213 VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS 272
++ +G + + G S + C+F P I++GS D ++ +++ K T HS
Sbjct: 94 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 273 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL---GNPAHKGGVYAVAWKPDGT 329
V AV ++ GS S+ +DG ++D AS + L NP V V + P+G
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP----VSFVKFSPNGK 208
Query: 330 QLLTASGDKTCKLWD 344
+L A+ D T KLWD
Sbjct: 209 YILAATLDNTLKLWD 223
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 103/225 (45%), Gaps = 18/225 (8%)
Query: 257 FEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNP 313
F P + K T H++ V +V++SP+G AS+ D + + YDG +S
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS----- 65
Query: 314 AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW---Q 370
HK G+ VAW D L++AS DKT K+WD+ + + + V C Q
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQ 121
Query: 371 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 430
+ +++ S + DV ++ + H+ P++A+ + D + + S+DG W+
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 431 AKTGENDRVQGAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLS 473
+G+ + ++ +K + G+ + +D+T+K D S
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 21/127 (16%)
Query: 563 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSAL 622
H V+ FSP+ E+L +S A + + ++ D + K H ++ VAWS DS L
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSDSNL 82
Query: 623 VASGSLDTTIIIWSLAS---------PAKHIIIKNAHPQSQITRLQWLDNDLLVSVGQDC 673
+ S S D T+ IW ++S + ++ N +PQS +L+VS D
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----------NLIVSGSFDE 132
Query: 674 NTKIWEI 680
+ +IW++
Sbjct: 133 SVRIWDV 139
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 121/302 (40%), Gaps = 32/302 (10%)
Query: 397 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDR-VQGAGHGNQINGMKATG 455
+ GH K ++++ SP+ + + S D I W A G+ ++ + G G +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 456 ELLYTCGIDDTIKQVDLSS-------NAYSGPEVKLGSQPRGLDIDENTLVTVTVKQ--- 505
LL + D T+K D+SS +S P+ N +V+ + +
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-----SNLIVSGSFDESVR 135
Query: 506 ISIVENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHL 564
I V+ G + +LP +P S++ + + L+ D I++ + D
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 565 GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWS---PDSA 621
PV+ FSP+ +Y++A+ + L+ + K + H + C+ +
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL--KTYTGHKNEKYCIFANFSVTGGK 253
Query: 622 LVASGSLDTTIIIWSLASPA--------KHIIIKNA-HPQSQITRLQWLDNDLLVSVGQ- 671
+ SGS D + IW+L + ++I A HP I L+ND + + +
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLYKS 313
Query: 672 DC 673
DC
Sbjct: 314 DC 315
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 80/220 (36%), Gaps = 21/220 (9%)
Query: 84 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTS 143
HS V ++P I SG VRIWD + + H
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--------------DP 154
Query: 144 IRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV 203
+ + G I S G RIWDT + + LK P+ + +SP+ + ++
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGK--YIL 211
Query: 204 GEGRERFGHVFMSETGTSVGEISGQ--SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP 261
+ ++ G + +G K +F + I++GSEDN + ++
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 271
Query: 262 FKFKMTKQEHSRFVQAVRYSPSGSHFASAGF--DGKVFLY 299
+ Q H+ V + P+ + ASA D + LY
Sbjct: 272 KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 607 HSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWL-DNDL 665
H+ V+ V +SP+ +AS S D I IW A K + H + I+ + W D++L
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGH-KLGISDVAWSSDSNL 82
Query: 666 LVSVGQDCNTKIWEIA 681
LVS D KIW+++
Sbjct: 83 LVSASDDKTLKIWDVS 98
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 12/195 (6%)
Query: 153 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGH 212
G ++AS ++IW + + H +G I D+AWS D+ +V + +
Sbjct: 38 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSNLLVSASDDKTL--K 93
Query: 213 VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS 272
++ +G + + G S + C+F P I++GS D ++ +++ K T HS
Sbjct: 94 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 273 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL---GNPAHKGGVYAVAWKPDGT 329
V AV ++ GS S+ +DG ++D AS + L NP V V + P+G
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP----VSFVKFSPNGK 208
Query: 330 QLLTASGDKTCKLWD 344
+L A+ D T KLWD
Sbjct: 209 YILAATLDNTLKLWD 223
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 103/225 (45%), Gaps = 18/225 (8%)
Query: 257 FEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNP 313
F P + K T H++ V +V++SP+G AS+ D + + YDG +S
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS----- 65
Query: 314 AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW---Q 370
HK G+ VAW D L++AS DKT K+WD+ + + + V C Q
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQ 121
Query: 371 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 430
+ +++ S + DV ++ + H+ P++A+ + D + + S+DG W+
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 431 AKTGENDRVQGAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLS 473
+G+ + ++ +K + G+ + +D+T+K D S
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 21/127 (16%)
Query: 563 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSAL 622
H V+ FSP+ E+L +S A + + ++ D + K H ++ VAWS DS L
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSDSNL 82
Query: 623 VASGSLDTTIIIWSLAS---------PAKHIIIKNAHPQSQITRLQWLDNDLLVSVGQDC 673
+ S S D T+ IW ++S + ++ N +PQS +L+VS D
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----------NLIVSGSFDE 132
Query: 674 NTKIWEI 680
+ +IW++
Sbjct: 133 SVRIWDV 139
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 121/302 (40%), Gaps = 32/302 (10%)
Query: 397 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDR-VQGAGHGNQINGMKATG 455
+ GH K ++++ SP+ + + S D I W A G+ ++ + G G +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 456 ELLYTCGIDDTIKQVDLSS-------NAYSGPEVKLGSQPRGLDIDENTLVTVTVKQ--- 505
LL + D T+K D+SS +S P+ N +V+ + +
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-----SNLIVSGSFDESVR 135
Query: 506 ISIVENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHL 564
I V+ G + +LP +P S++ + + L+ D I++ + D
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 565 GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWS---PDSA 621
PV+ FSP+ +Y++A+ + L+ + K + H + C+ +
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL--KTYTGHKNEKYCIFANFSVTGGK 253
Query: 622 LVASGSLDTTIIIWSLASPA--------KHIIIKNA-HPQSQITRLQWLDNDLLVSVGQ- 671
+ SGS D + IW+L + ++I A HP I L+ND + + +
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLFKS 313
Query: 672 DC 673
DC
Sbjct: 314 DC 315
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 77/212 (36%), Gaps = 19/212 (8%)
Query: 84 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTS 143
HS V ++P I SG VRIWD + + H
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--------------DP 154
Query: 144 IRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV 203
+ + G I S G RIWDT + + LK P+ + +SP+ + ++
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGK--YIL 211
Query: 204 GEGRERFGHVFMSETGTSVGEISGQ--SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP 261
+ ++ G + +G K +F + I++GSEDN + ++
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 271
Query: 262 FKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD 293
+ Q H+ V + P+ + ASA +
Sbjct: 272 KEIVQKLQGHTDVVISTACHPTENIIASAALE 303
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 607 HSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWL-DNDL 665
H+ V+ V +SP+ +AS S D I IW A K + H + I+ + W D++L
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGH-KLGISDVAWSSDSNL 82
Query: 666 LVSVGQDCNTKIWEIA 681
LVS D KIW+++
Sbjct: 83 LVSASDDKTLKIWDVS 98
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 128/290 (44%), Gaps = 25/290 (8%)
Query: 153 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGH 212
G ++AS ++IW + + H +G I D+AWS D+ +V + ++
Sbjct: 59 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSNLLVSASD--DKTLK 114
Query: 213 VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS 272
++ +G + + G S + C+F P I++GS D ++ +++ K T HS
Sbjct: 115 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHS 173
Query: 273 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL---GNPAHKGGVYAVAWKPDGT 329
V AV ++ GS S+ +DG ++D AS + L NP V V + P+G
Sbjct: 174 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP----VSFVKFSPNGK 229
Query: 330 QLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQ------GDYLLTVSLSGFI 383
+L A+ D T KLWD + + G++ E C++ G ++++ S +
Sbjct: 230 YILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKY---CIFANFSVTGGKWIVSGSEDNLV 285
Query: 384 SYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS--HDGFITRWNA 431
++ ++ ++GH + + A P + + + +D I W +
Sbjct: 286 YIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 334
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 18/222 (8%)
Query: 260 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 316
P + K T H++ V +V++SP+G AS+ D + + YDG +S HK
Sbjct: 35 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 89
Query: 317 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW---QGDY 373
G+ VAW D L++AS DKT K+WD+ + + + V C Q +
Sbjct: 90 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNL 145
Query: 374 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 433
+++ S + DV ++ + H+ P++A+ + D + + S+DG W+ +
Sbjct: 146 IVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 204
Query: 434 GENDRVQGAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLS 473
G+ + ++ +K + G+ + +D+T+K D S
Sbjct: 205 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 246
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 21/127 (16%)
Query: 563 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSAL 622
H V+ FSP+ E+L +S A + + ++ D + K H ++ VAWS DS L
Sbjct: 46 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSDSNL 103
Query: 623 VASGSLDTTIIIWSLAS---------PAKHIIIKNAHPQSQITRLQWLDNDLLVSVGQDC 673
+ S S D T+ IW ++S + ++ N +PQS +L+VS D
Sbjct: 104 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----------NLIVSGSFDE 153
Query: 674 NTKIWEI 680
+ +IW++
Sbjct: 154 SVRIWDV 160
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 121/302 (40%), Gaps = 32/302 (10%)
Query: 397 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDR-VQGAGHGNQINGMKATG 455
+ GH K ++++ SP+ + + S D I W A G+ ++ + G G +
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 456 ELLYTCGIDDTIKQVDLSS-------NAYSGPEVKLGSQPRGLDIDENTLVTVTVKQ--- 505
LL + D T+K D+SS +S P+ N +V+ + +
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-----NLIVSGSFDESVR 156
Query: 506 ISIVENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHL 564
I V+ G + +LP +P S++ + + L+ D I++ + D
Sbjct: 157 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 216
Query: 565 GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWS---PDSA 621
PV+ FSP+ +Y++A+ + L+ + K + H + C+ +
Sbjct: 217 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL--KTYTGHKNEKYCIFANFSVTGGK 274
Query: 622 LVASGSLDTTIIIWSLASPA--------KHIIIKNA-HPQSQITRLQWLDNDLLVSVGQ- 671
+ SGS D + IW+L + ++I A HP I L+ND + + +
Sbjct: 275 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 334
Query: 672 DC 673
DC
Sbjct: 335 DC 336
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 607 HSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWL-DNDL 665
H+ V+ V +SP+ +AS S D I IW A K + H + I+ + W D++L
Sbjct: 46 HTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGH-KLGISDVAWSSDSNL 103
Query: 666 LVSVGQDCNTKIWEIA 681
LVS D KIW+++
Sbjct: 104 LVSASDDKTLKIWDVS 119
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 127/290 (43%), Gaps = 25/290 (8%)
Query: 153 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGH 212
G ++AS ++IW + + H +G I D+AWS D+ +V + +
Sbjct: 57 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSNLLVSASDDKTL--K 112
Query: 213 VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS 272
++ +G + + G S + C+F P I++GS D ++ +++ K T HS
Sbjct: 113 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHS 171
Query: 273 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL---GNPAHKGGVYAVAWKPDGT 329
V AV ++ GS S+ +DG ++D AS + L NP V V + P+G
Sbjct: 172 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP----VSFVKFSPNGK 227
Query: 330 QLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQ------GDYLLTVSLSGFI 383
+L A+ D T KLWD + + G++ E C++ G ++++ S +
Sbjct: 228 YILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKY---CIFANFSVTGGKWIVSGSEDNLV 283
Query: 384 SYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS--HDGFITRWNA 431
++ ++ ++GH + + A P + + + +D I W +
Sbjct: 284 YIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 332
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 18/222 (8%)
Query: 260 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 316
P + K T H++ V +V++SP+G AS+ D + + YDG +S HK
Sbjct: 33 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 87
Query: 317 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW---QGDY 373
G+ VAW D L++AS DKT K+WD+ + + + V C Q +
Sbjct: 88 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNL 143
Query: 374 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 433
+++ S + DV ++ + H+ P++A+ + D + + S+DG W+ +
Sbjct: 144 IVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 202
Query: 434 GENDRVQGAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLS 473
G+ + ++ +K + G+ + +D+T+K D S
Sbjct: 203 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 244
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 21/127 (16%)
Query: 563 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSAL 622
H V+ FSP+ E+L +S A + + ++ D + K H ++ VAWS DS L
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSDSNL 101
Query: 623 VASGSLDTTIIIWSLAS---------PAKHIIIKNAHPQSQITRLQWLDNDLLVSVGQDC 673
+ S S D T+ IW ++S + ++ N +PQS +L+VS D
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----------NLIVSGSFDE 151
Query: 674 NTKIWEI 680
+ +IW++
Sbjct: 152 SVRIWDV 158
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 121/302 (40%), Gaps = 32/302 (10%)
Query: 397 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDR-VQGAGHGNQINGMKATG 455
+ GH K ++++ SP+ + + S D I W A G+ ++ + G G +
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 456 ELLYTCGIDDTIKQVDLSS-------NAYSGPEVKLGSQPRGLDIDENTLVTVTVKQ--- 505
LL + D T+K D+SS +S P+ N +V+ + +
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-----NLIVSGSFDESVR 154
Query: 506 ISIVENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHL 564
I V+ G + +LP +P S++ + + L+ D I++ + D
Sbjct: 155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 214
Query: 565 GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWS---PDSA 621
PV+ FSP+ +Y++A+ + L+ + K + H + C+ +
Sbjct: 215 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL--KTYTGHKNEKYCIFANFSVTGGK 272
Query: 622 LVASGSLDTTIIIWSLASPA--------KHIIIKNA-HPQSQITRLQWLDNDLLVSVGQ- 671
+ SGS D + IW+L + ++I A HP I L+ND + + +
Sbjct: 273 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 332
Query: 672 DC 673
DC
Sbjct: 333 DC 334
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 607 HSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWL-DNDL 665
H+ V+ V +SP+ +AS S D I IW A K + H + I+ + W D++L
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGH-KLGISDVAWSSDSNL 101
Query: 666 LVSVGQDCNTKIWEIA 681
LVS D KIW+++
Sbjct: 102 LVSASDDKTLKIWDVS 117
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 12/195 (6%)
Query: 153 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGH 212
G ++A+ ++IW + + H +G I D+AWS D+ +V + +
Sbjct: 38 GEWLAASSADKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSNLLVSASDDKTL--K 93
Query: 213 VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS 272
++ +G + + G S + C+F P I++GS D ++ +++ K T HS
Sbjct: 94 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 273 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL---GNPAHKGGVYAVAWKPDGT 329
V AV ++ GS S+ +DG ++D AS + L NP V V + P+G
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP----VSFVKFSPNGK 208
Query: 330 QLLTASGDKTCKLWD 344
+L A+ D T KLWD
Sbjct: 209 YILAATLDNTLKLWD 223
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 103/225 (45%), Gaps = 18/225 (8%)
Query: 257 FEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNP 313
F P + K T H++ V +V++SP+G A++ D + + YDG +S
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTIS----- 65
Query: 314 AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW---Q 370
HK G+ VAW D L++AS DKT K+WD+ + + + V C Q
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQ 121
Query: 371 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 430
+ +++ S + DV ++ + H+ P++A+ + D + + S+DG W+
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 431 AKTGENDRVQGAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLS 473
+G+ + ++ +K + G+ + +D+T+K D S
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 21/127 (16%)
Query: 563 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSAL 622
H V+ FSP+ E+L AS A + + ++ D + K H ++ VAWS DS L
Sbjct: 25 HTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSDSNL 82
Query: 623 VASGSLDTTIIIWSLAS---------PAKHIIIKNAHPQSQITRLQWLDNDLLVSVGQDC 673
+ S S D T+ IW ++S + ++ N +PQS +L+VS D
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----------NLIVSGSFDE 132
Query: 674 NTKIWEI 680
+ +IW++
Sbjct: 133 SVRIWDV 139
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 120/302 (39%), Gaps = 32/302 (10%)
Query: 397 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDR-VQGAGHGNQINGMKATG 455
+ GH K ++++ SP+ + S D I W A G+ ++ + G G +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 456 ELLYTCGIDDTIKQVDLSS-------NAYSGPEVKLGSQPRGLDIDENTLVTVTVKQ--- 505
LL + D T+K D+SS +S P+ N +V+ + +
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-----SNLIVSGSFDESVR 135
Query: 506 ISIVENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHL 564
I V+ G + +LP +P S++ + + L+ D I++ + D
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 565 GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWS---PDSA 621
PV+ FSP+ +Y++A+ + L+ + K + H + C+ +
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL--KTYTGHKNEKYCIFANFSVTGGK 253
Query: 622 LVASGSLDTTIIIWSLASPA--------KHIIIKNA-HPQSQITRLQWLDNDLLVSVGQ- 671
+ SGS D + IW+L + ++I A HP I L+ND + + +
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 313
Query: 672 DC 673
DC
Sbjct: 314 DC 315
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 607 HSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWL-DNDL 665
H+ V+ V +SP+ +A+ S D I IW A K + H + I+ + W D++L
Sbjct: 25 HTKAVSSVKFSPNGEWLAASSADKLIKIWG-AYDGKFEKTISGH-KLGISDVAWSSDSNL 82
Query: 666 LVSVGQDCNTKIWEIA 681
LVS D KIW+++
Sbjct: 83 LVSASDDKTLKIWDVS 98
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 123/289 (42%), Gaps = 35/289 (12%)
Query: 144 IRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV 203
+ ++++ S G + SG G++R+WD + F + +A+S DN+++V
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLA--AGVSTRRFVGHTKDVLSVAFSLDNRQIVSA 490
Query: 204 GEGRERFGHVFMSETGTSVGEISGQSKPINSC-DFKPS--RPFRIITGSEDNTIAVFEGP 260
R + E ++ E + SC F P+ +P I++ S D T+ V+
Sbjct: 491 SRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP-TIVSASWDKTVKVWNLS 549
Query: 261 PFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVY 320
K + T H+ +V V SP GS AS G DG V L+D A + L ++
Sbjct: 550 NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL---EANSVIH 606
Query: 321 AVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLS 380
A+ + P+ L A+ + K+WD+E+KS+V + L V L
Sbjct: 607 ALCFSPN-RYWLCAATEHGIKIWDLESKSIVED---------------------LKVDLK 644
Query: 381 GFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRW 429
D + P+ R + T+L S D T+F+G DG I W
Sbjct: 645 AEAEKADNSGPAATKRKV----IYCTSLNWSADGSTLFSGYTDGVIRVW 689
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 105/229 (45%), Gaps = 37/229 (16%)
Query: 225 ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE------------HS 272
++ + PI++ D I++ S D +I ++ K+TK + HS
Sbjct: 385 VTAIATPIDNADI-------IVSASRDKSIILW-------KLTKDDKAYGVAQRRLTGHS 430
Query: 273 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLL 332
FV+ V S G S +DG++ L+D A+ VS H V +VA+ D Q++
Sbjct: 431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAG--VSTRRFVGHTKDVLSVAFSLDNRQIV 488
Query: 333 TASGDKTCKLWDI--ETKSVVSEFIMGNQVEDQQVSCLWQGDYLL--TVSLSGFISYLDV 388
+AS D+T KLW+ E K +SE G + VSC+ L T+ + + + V
Sbjct: 489 SASRDRTIKLWNTLGECKYTISE---GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKV 545
Query: 389 NNPS-TPIR-VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGE 435
N S +R + GH ++ +A+SPD +G DG + W+ G+
Sbjct: 546 WNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK 594
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 18/175 (10%)
Query: 314 AHKGGVYAVAWKPDGTQLL-TASGDKTCKLW----DIETKSVVSEFIMGNQ--VEDQQVS 366
AH V A+A D ++ +AS DK+ LW D + V + G+ VED +S
Sbjct: 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS 439
Query: 367 CLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFI 426
G + L+ S G + D+ + R + GH K + ++A S D + + S D I
Sbjct: 440 S--DGQFALSGSWDGELRLWDLAAGVSTRRFV-GHTKDVLSVAFSLDNRQIVSASRDRTI 496
Query: 427 TRWNAKTGENDRV---QGAGHGNQINGMKATGELL----YTCGIDDTIKQVDLSS 474
WN GE G GH + ++ ++ + L + D T+K +LS+
Sbjct: 497 KLWNT-LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN 550
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 607 HSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWLDNDLL 666
H+ V+ VA SPD +L ASG D +++W LA K + + S I L + N
Sbjct: 560 HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK---LYSLEANSVIHALCFSPNRYW 616
Query: 667 VSVGQDCNTKIWEI 680
+ + KIW++
Sbjct: 617 LCAATEHGIKIWDL 630
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 577 EYLVASDAHRKVVLYRVPDFELAH---NKEWGFHSAKVNCVAWSPDSALVASGSLDTTII 633
+ +V++ + ++L+++ + A+ + HS V V S D SGS D +
Sbjct: 396 DIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455
Query: 634 IWSLAS--PAKHIIIKNAHPQSQITRLQWLDNDLLVSVGQDCNTKIW 678
+W LA+ + + H + ++ LDN +VS +D K+W
Sbjct: 456 LWDLAAGVSTRRFV---GHTKDVLSVAFSLDNRQIVSASRDRTIKLW 499
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 16/108 (14%)
Query: 66 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 125
+V + N+ N + H+ V+ SP G ASG G V +WD + +
Sbjct: 542 TVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS--- 598
Query: 126 HPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNK 173
L S+ + L S Y ++IWD +K
Sbjct: 599 -------------LEANSVIHALCFSPNRYWLCAATEHGIKIWDLESK 633
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 126/562 (22%), Positives = 204/562 (36%), Gaps = 80/562 (14%)
Query: 183 PIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRP 242
P + +S D QR + G ++ VF +ETG + +I + C F
Sbjct: 613 PHTDAVYHACFSQDGQR--IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS 670
Query: 243 FRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH--FASAGFDGKVFLYD 300
+ I T S D + +++ K T EHS V ++ +H A+ D + L+D
Sbjct: 671 Y-IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 729
Query: 301 GASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDI----ETKSV-VSEFI 355
+ + + H V + PD L + S D T +LWD+ E KS+ V F
Sbjct: 730 LNQKECRNTMF--GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787
Query: 356 MGNQV--EDQQV---SCLWQGD-YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALA 409
+ ++ ED +V C W D + V+ + D++ + GH+ I
Sbjct: 788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD 847
Query: 410 LSPDRGTVFTGSHDGFITRWNAKTGENDRVQGA---GHGNQINGMKAT--GELLYTCGID 464
SP + WN + R++ A GH + ++G+ + G T D
Sbjct: 848 FSPYDHLAVIALSQYCVELWNI----DSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDD 903
Query: 465 DTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEP 524
TI+ + + V Q + EN + + V I ++ A + IDY P
Sbjct: 904 QTIRVWETKKVCKNSAIVL--KQEIDVVFQENETMVLAVDNIRGLQLIAGKTG-QIDYLP 960
Query: 525 ----SSISLDHEHGLVAVGGADSKVHIYEL-NNKSLSPKAELDHLGPVTDCSFSPSNEYL 579
S L VA G D + I EL NN+ S + + H V F+ + L
Sbjct: 961 EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFS--SGVGHKKAVRHIQFTADGKTL 1018
Query: 580 VASDAHRKVVLYR---------------VPDFELAHNKE---WGF--------------- 606
++S + ++ V DF L + W F
Sbjct: 1019 ISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIE 1078
Query: 607 -----HSAKVNCVAWSPDSALVASGSLDTTIIIWS--LASPAKHIIIKNAHPQSQITRLQ 659
H V A S D+ +S S D T IWS L SP + N +
Sbjct: 1079 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS-- 1136
Query: 660 WLDNDLLVSVGQDCNTKIWEIA 681
LD LL + + +IW ++
Sbjct: 1137 -LDGILLATGDDNGEIRIWNVS 1157
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 85/391 (21%), Positives = 147/391 (37%), Gaps = 81/391 (20%)
Query: 265 KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW 324
++ + H+ V +S G AS G D + ++ + + + ++ AH+ V A+
Sbjct: 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI--KAHEDEVLCCAF 665
Query: 325 KPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW---QGDYLLTVSLSG 381
D + + T S DK K+WD T +V + +QV+C + ++LL + S
Sbjct: 666 SSDDSYIATCSADKKVKIWDSATGKLVHTY----DEHSEQVNCCHFTNKSNHLLLATGSN 721
Query: 382 --FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRV 439
F+ D+N + GH + SPD + + S DG + W+ V
Sbjct: 722 DFFLKLWDLNQKECR-NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD--------V 772
Query: 440 QGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLV 499
+ A IN +K+ LSS D V
Sbjct: 773 RSANERKSIN-----------------VKRFFLSSE------------------DPPEDV 797
Query: 500 TVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKA 559
V VK S +G K+ + A +KV +++++ L +
Sbjct: 798 EVIVKCCSWSADGDKI----------------------IVAAKNKVLLFDIHTSGLLAEI 835
Query: 560 ELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPD 619
H + C FSP + V + + V L+ + D L G H + V+ V +SPD
Sbjct: 836 HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI-DSRLKVADCRG-HLSWVHGVMFSPD 893
Query: 620 SALVASGSLDTTIIIWSLASPAKH--IIIKN 648
+ + S D TI +W K+ I++K
Sbjct: 894 GSSFLTASDDQTIRVWETKKVCKNSAIVLKQ 924
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 108/301 (35%), Gaps = 65/301 (21%)
Query: 149 VLSIGF-----YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV 203
VL F YIA+ KV+IWD
Sbjct: 660 VLCCAFSSDDSYIATCSADKKVKIWD---------------------------------- 685
Query: 204 GEGRERFGHVFMSETGTSVGEISGQSKPINSCDF-KPSRPFRIITGSEDNTIAVFEGPPF 262
S TG V S+ +N C F S + TGS D + +++
Sbjct: 686 ------------SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 733
Query: 263 KFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD-----------LVSELG 311
+ + T H+ V R+SP AS DG + L+D SA+ L SE
Sbjct: 734 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDP 793
Query: 312 NPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQG 371
+ V +W DG +++ A+ +K L+DI T +++E G+ Q
Sbjct: 794 PEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQYCD-FSPY 851
Query: 372 DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA 431
D+L ++LS + L + + +GH + + SPD + T S D I W
Sbjct: 852 DHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET 911
Query: 432 K 432
K
Sbjct: 912 K 912
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 130/600 (21%), Positives = 216/600 (36%), Gaps = 115/600 (19%)
Query: 84 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTS 143
H V +S YIA+ KV+IWD+ + + + H + T+
Sbjct: 656 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS------EQVNCCHFTN 709
Query: 144 IRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV 203
N L+L+ G S D +++WD KE +N + +SPD++ +
Sbjct: 710 KSNHLLLATG----SNDFF--LKLWDLNQKE--CRNTMFGHTNSVNHCRFSPDDELLASC 761
Query: 204 -GEGRERFGHVFMSETGTSVGE----ISGQSKP-----INSCDFKPSRPFRIITGSEDNT 253
+G R V + S+ +S + P I C + +II +++
Sbjct: 762 SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKV 821
Query: 254 IAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP 313
+ H +Q +SP A V L++ S V++
Sbjct: 822 LLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC--R 879
Query: 314 AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVV--SEFIMGNQV----EDQQVSC 367
H V+ V + PDG+ LTAS D+T ++W ETK V S ++ ++ ++ +
Sbjct: 880 GHLSWVHGVMFSPDGSSFLTASDDQTIRVW--ETKKVCKNSAIVLKQEIDVVFQENETMV 937
Query: 368 LW---------------QGDYL-----LTVSLSGFISYLDVNNPSTPIRVIK-------- 399
L Q DYL LS + Y+ + I++I+
Sbjct: 938 LAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFS 997
Query: 400 ---GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATGE 456
GH K + + + D T+ + S D I WN +TG D V H + + +
Sbjct: 998 SGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG--DYVFLQAHQETVKDFRLLQD 1055
Query: 457 -LLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKV 515
L + D T+K + V G R + T+++ +I + K
Sbjct: 1056 SRLLSWSFDGTVKVWN----------VITGRIERDFTCHQGTVLSC-----AISSDATKF 1100
Query: 516 SSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD-HLGPVTDCSFSP 574
SS D S D LSP EL H G V +FS
Sbjct: 1101 SSTSADKTAKIWSFD-----------------------LLSPLHELKGHNGCVRCSAFSL 1137
Query: 575 SNEYLVASDAHRKVVLYRVPDFELAHN-------KEWGFHSAKVNCVAWSPDS-ALVASG 626
L D + ++ ++ V D +L H+ + H V V +SPDS LV++G
Sbjct: 1138 DGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1197
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 86/202 (42%), Gaps = 15/202 (7%)
Query: 245 IITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASA 304
+I+ SED+ I V+ + Q H V+ R S S FDG V +++ +
Sbjct: 1018 LISSSEDSVIQVWNWQTGDYVFL-QAHQETVKDFRL-LQDSRLLSWSFDGTVKVWNVITG 1075
Query: 305 DLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQ 364
+ E H+G V + A D T+ + S DKT K+W + S + E N
Sbjct: 1076 RI--ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCS 1133
Query: 365 VSCLWQGDYLLTVSLSGFISYLDVNN-----PSTPIRVIKG---HNKPITALALSPDRGT 416
L G L T +G I +V++ PI V +G H +T + SPD T
Sbjct: 1134 AFSL-DGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKT 1192
Query: 417 VFTGSHDGFITRWNAKTGENDR 438
+ + G++ WN TG++ +
Sbjct: 1193 LVSAG--GYLKWWNVATGDSSQ 1212
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 30/148 (20%)
Query: 66 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 125
+VI IE T SCA++ + F S D + K+ +D ++ H LK
Sbjct: 1071 NVITGRIERDFTCHQGTVLSCAISS---DATKFSSTSADKTAKIWSFDLLSPLHELKGH- 1126
Query: 126 HPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPI- 184
G ++ S S+ IL +A+GD +G++RIW+ + + L + PI
Sbjct: 1127 ---NGCVR-----CSAFSLDGIL-------LATGDDNGEIRIWNVSDGQ--LLHSCAPIS 1169
Query: 185 --------GGPIKDIAWSPDNQRMVVVG 204
GG + D+ +SPD++ +V G
Sbjct: 1170 VEEGTATHGGWVTDVCFSPDSKTLVSAG 1197
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 126/562 (22%), Positives = 202/562 (35%), Gaps = 80/562 (14%)
Query: 183 PIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRP 242
P + +S D QR + G ++ VF +ETG + +I + C F
Sbjct: 620 PHTDAVYHACFSQDGQR--IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS 677
Query: 243 FRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVF--LYD 300
+ I T S D + +++ K T EHS V ++ +H A F L+D
Sbjct: 678 Y-IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 736
Query: 301 GASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDI----ETKSV-VSEFI 355
+ + + H V + PD L + S D T +LWD+ E KS+ V F
Sbjct: 737 LNQKECRNTMF--GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 794
Query: 356 MGNQV--EDQQV---SCLWQGD-YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALA 409
+ ++ ED +V C W D + V+ + D++ + GH+ I
Sbjct: 795 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD 854
Query: 410 LSPDRGTVFTGSHDGFITRWNAKTGENDRVQGA---GHGNQINGMKAT--GELLYTCGID 464
SP + WN + R++ A GH + ++G+ + G T D
Sbjct: 855 FSPYDHLAVIALSQYCVELWNI----DSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDD 910
Query: 465 DTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEP 524
TI+ + + V Q + EN + + V I ++ A + IDY P
Sbjct: 911 QTIRVWETKKVCKNSAIVL--KQEIDVVFQENETMVLAVDNIRGLQLIAGKTG-QIDYLP 967
Query: 525 ----SSISLDHEHGLVAVGGADSKVHIYEL-NNKSLSPKAELDHLGPVTDCSFSPSNEYL 579
S L VA G D + I EL NN+ S + + H V F+ + L
Sbjct: 968 EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFS--SGVGHKKAVRHIQFTADGKTL 1025
Query: 580 VASDAHRKVVLYR---------------VPDFELAHNKE---WGF--------------- 606
++S + ++ V DF L + W F
Sbjct: 1026 ISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIE 1085
Query: 607 -----HSAKVNCVAWSPDSALVASGSLDTTIIIWS--LASPAKHIIIKNAHPQSQITRLQ 659
H V A S D+ +S S D T IWS L SP + N +
Sbjct: 1086 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS-- 1143
Query: 660 WLDNDLLVSVGQDCNTKIWEIA 681
LD LL + + +IW ++
Sbjct: 1144 -LDGILLATGDDNGEIRIWNVS 1164
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 85/391 (21%), Positives = 147/391 (37%), Gaps = 81/391 (20%)
Query: 265 KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW 324
++ + H+ V +S G AS G D + ++ + + + ++ AH+ V A+
Sbjct: 615 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI--KAHEDEVLCCAF 672
Query: 325 KPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW---QGDYLLTVSLSG 381
D + + T S DK K+WD T +V + +QV+C + ++LL + S
Sbjct: 673 SSDDSYIATCSADKKVKIWDSATGKLVHTY----DEHSEQVNCCHFTNKSNHLLLATGSN 728
Query: 382 --FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRV 439
F+ D+N + GH + SPD + + S DG + W+ V
Sbjct: 729 DFFLKLWDLNQKECR-NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD--------V 779
Query: 440 QGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLV 499
+ A IN +K+ LSS D V
Sbjct: 780 RSANERKSIN-----------------VKRFFLSSE------------------DPPEDV 804
Query: 500 TVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKA 559
V VK S +G K+ + A +KV +++++ L +
Sbjct: 805 EVIVKCCSWSADGDKI----------------------IVAAKNKVLLFDIHTSGLLAEI 842
Query: 560 ELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPD 619
H + C FSP + V + + V L+ + D L G H + V+ V +SPD
Sbjct: 843 HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI-DSRLKVADCRG-HLSWVHGVMFSPD 900
Query: 620 SALVASGSLDTTIIIWSLASPAKH--IIIKN 648
+ + S D TI +W K+ I++K
Sbjct: 901 GSSFLTASDDQTIRVWETKKVCKNSAIVLKQ 931
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 108/301 (35%), Gaps = 65/301 (21%)
Query: 149 VLSIGF-----YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV 203
VL F YIA+ KV+IWD
Sbjct: 667 VLCCAFSSDDSYIATCSADKKVKIWD---------------------------------- 692
Query: 204 GEGRERFGHVFMSETGTSVGEISGQSKPINSCDF-KPSRPFRIITGSEDNTIAVFEGPPF 262
S TG V S+ +N C F S + TGS D + +++
Sbjct: 693 ------------SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 740
Query: 263 KFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD-----------LVSELG 311
+ + T H+ V R+SP AS DG + L+D SA+ L SE
Sbjct: 741 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDP 800
Query: 312 NPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQG 371
+ V +W DG +++ A+ +K L+DI T +++E G+ Q
Sbjct: 801 PEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQYCD-FSPY 858
Query: 372 DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA 431
D+L ++LS + L + + +GH + + SPD + T S D I W
Sbjct: 859 DHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET 918
Query: 432 K 432
K
Sbjct: 919 K 919
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 130/600 (21%), Positives = 216/600 (36%), Gaps = 115/600 (19%)
Query: 84 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTS 143
H V +S YIA+ KV+IWD+ + + + H + T+
Sbjct: 663 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS------EQVNCCHFTN 716
Query: 144 IRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV 203
N L+L+ G S D +++WD KE +N + +SPD++ +
Sbjct: 717 KSNHLLLATG----SNDFF--LKLWDLNQKE--CRNTMFGHTNSVNHCRFSPDDELLASC 768
Query: 204 -GEGRERFGHVFMSETGTSVGE----ISGQSKP-----INSCDFKPSRPFRIITGSEDNT 253
+G R V + S+ +S + P I C + +II +++
Sbjct: 769 SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKV 828
Query: 254 IAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP 313
+ H +Q +SP A V L++ S V++
Sbjct: 829 LLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC--R 886
Query: 314 AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVV--SEFIMGNQV----EDQQVSC 367
H V+ V + PDG+ LTAS D+T ++W ETK V S ++ ++ ++ +
Sbjct: 887 GHLSWVHGVMFSPDGSSFLTASDDQTIRVW--ETKKVCKNSAIVLKQEIDVVFQENETMV 944
Query: 368 LW---------------QGDYL-----LTVSLSGFISYLDVNNPSTPIRVIK-------- 399
L Q DYL LS + Y+ + I++I+
Sbjct: 945 LAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFS 1004
Query: 400 ---GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATGE 456
GH K + + + D T+ + S D I WN +TG D V H + + +
Sbjct: 1005 SGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG--DYVFLQAHQETVKDFRLLQD 1062
Query: 457 -LLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKV 515
L + D T+K + V G R + T+++ +I + K
Sbjct: 1063 SRLLSWSFDGTVKVWN----------VITGRIERDFTCHQGTVLSC-----AISSDATKF 1107
Query: 516 SSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD-HLGPVTDCSFSP 574
SS D S D LSP EL H G V +FS
Sbjct: 1108 SSTSADKTAKIWSFD-----------------------LLSPLHELKGHNGCVRCSAFSL 1144
Query: 575 SNEYLVASDAHRKVVLYRVPDFELAHN-------KEWGFHSAKVNCVAWSPDS-ALVASG 626
L D + ++ ++ V D +L H+ + H V V +SPDS LV++G
Sbjct: 1145 DGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1204
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 86/202 (42%), Gaps = 15/202 (7%)
Query: 245 IITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASA 304
+I+ SED+ I V+ + Q H V+ R S S FDG V +++ +
Sbjct: 1025 LISSSEDSVIQVWNWQTGDYVFL-QAHQETVKDFRL-LQDSRLLSWSFDGTVKVWNVITG 1082
Query: 305 DLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQ 364
+ E H+G V + A D T+ + S DKT K+W + S + E N
Sbjct: 1083 RI--ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCS 1140
Query: 365 VSCLWQGDYLLTVSLSGFISYLDVNN-----PSTPIRVIKG---HNKPITALALSPDRGT 416
L G L T +G I +V++ PI V +G H +T + SPD T
Sbjct: 1141 AFSL-DGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKT 1199
Query: 417 VFTGSHDGFITRWNAKTGENDR 438
+ + G++ WN TG++ +
Sbjct: 1200 LVSAG--GYLKWWNVATGDSSQ 1219
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 30/148 (20%)
Query: 66 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 125
+VI IE T SCA++ + F S D + K+ +D ++ H LK
Sbjct: 1078 NVITGRIERDFTCHQGTVLSCAISS---DATKFSSTSADKTAKIWSFDLLSPLHELKGH- 1133
Query: 126 HPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPI- 184
G ++ S S+ IL +A+GD +G++RIW+ + + L + PI
Sbjct: 1134 ---NGCVR-----CSAFSLDGIL-------LATGDDNGEIRIWNVSDGQ--LLHSCAPIS 1176
Query: 185 --------GGPIKDIAWSPDNQRMVVVG 204
GG + D+ +SPD++ +V G
Sbjct: 1177 VEEGTATHGGWVTDVCFSPDSKTLVSAG 1204
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 16/228 (7%)
Query: 225 ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG 284
+ G S + S D+ P + + I++ S+D + V+ + + H +V ++P+G
Sbjct: 62 LQGHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 285 SHFASAGFDGKVFLYDGASADLVSELGN-------PAHKGGVYAVAWKPDG-TQLLTASG 336
A G D +++ +S GN HKG + + PD T+L+T SG
Sbjct: 121 QSVACGGLDSACSIFNLSSQ--ADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG 178
Query: 337 DKTCKLWDIETKSVV----SEFIMGNQVEDQQVSC-LWQGDYLLTVSLSGFISYLDVNNP 391
D+TC LWD+ T + SEF G+ + +S + ++ S + D+
Sbjct: 179 DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT 238
Query: 392 STPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRV 439
S +R GH I ++ PD TGS DG ++ +TG +V
Sbjct: 239 SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV 286
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 121/309 (39%), Gaps = 51/309 (16%)
Query: 84 HSCAVNVAKYSPSGFYIASGDISGKVRIWD--TVNKEH--------ILKNEFHPIG---- 129
HS V ++P +I S G++ +W+ T K H +++ F P G
Sbjct: 65 HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVA 124
Query: 130 -GPIKDIGTLLSLTS---------IRNILVLSIGF------------YIASGDISGKVRI 167
G + ++ +L+S + +L G+ + +G +
Sbjct: 125 CGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVL 184
Query: 168 WDTVNKEHI--LKNEFHPIGGPIKDIAWSPD--NQRMVVVGEGRERFGHVFMSETGTSVG 223
WD + I +EF P G ++ S + N M + G + T +V
Sbjct: 185 WDVTTGQRISIFGSEF-PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVR 243
Query: 224 EISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP-FKFKMTKQEHSR------FVQ 276
G INS F P R TGS+D T +F+ + ++ +E R V
Sbjct: 244 TYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVT 302
Query: 277 AVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG--NPAHKGGVYAVAWKPDGTQLLTA 334
+V +S SG + +G +++D A++V LG +H+G + + DG+ L T
Sbjct: 303 SVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTG 362
Query: 335 SGDKTCKLW 343
S DK K+W
Sbjct: 363 SWDKNLKIW 371
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 77/369 (20%), Positives = 135/369 (36%), Gaps = 76/369 (20%)
Query: 305 DLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQ 364
DLV H G VY++ W P+ +++AS D +W+ T + +
Sbjct: 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS---------QKTHAIK 105
Query: 365 VSCLWQGDYLL-----TVSLSGFISYLDVNNPST--------PI-RVIKGHNKPITALAL 410
+ C W + +V+ G S + N S+ P+ RV+ GH ++
Sbjct: 106 LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQY 165
Query: 411 SPDRGT-VFTGSHDGFITRWNAKTGENDRVQG----AGHGN-----QINGMKATGELLYT 460
PD+ T + TGS D W+ TG+ + G +GH IN + A + +
Sbjct: 166 VPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGS 225
Query: 461 CGIDDTIKQVDL-----SSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKV 515
C D T++ DL + Y G E + S + +G +
Sbjct: 226 C--DTTVRLWDLRITSRAVRTYHGHEGDINS-------------------VKFFPDGQRF 264
Query: 516 SSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPS 575
+ D + H L ++ N+ P + L VT +FS S
Sbjct: 265 GTGSDDGTCRLFDMRTGHQL-------------QVYNR--EPDRNDNELPIVTSVAFSIS 309
Query: 576 NEYLVASDAHRKVVLYRVPDFELAHN--KEWGFHSAKVNCVAWSPDSALVASGSLDTTII 633
L A ++ ++ E+ N H +++C+ S D + + +GS D +
Sbjct: 310 GRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLK 369
Query: 634 IWSLASPAK 642
IW+ + K
Sbjct: 370 IWAFSGHRK 378
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 129/331 (38%), Gaps = 47/331 (14%)
Query: 390 NPSTPI--RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGEND---------- 437
NP+ + R ++GH+ + +L +P++ + + S DG + WNA T +
Sbjct: 52 NPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWV 111
Query: 438 -RVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRG------ 490
A +G + A G L C I + Q D N P ++ + +G
Sbjct: 112 MECAFAPNGQSV----ACGGLDSACSIFNLSSQADRDGNM---PVSRVLTGHKGYASSCQ 164
Query: 491 -LDIDENTLVTVTVKQISI---VENGAKV----SSLPIDYEPSSISL---DHEHGLVAVG 539
+ E L+T + Q + V G ++ S P + +SL + G
Sbjct: 165 YVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISG 224
Query: 540 GADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYL--VASDAHRKVVLYRVPDFE 597
D+ V +++L S + + H G + F P + + D ++ R
Sbjct: 225 SCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL 284
Query: 598 LAHNKEWGFHSAK---VNCVAWSPDSALVASGSLDTTIIIWS--LASPAKHI-IIKNAHP 651
+N+E + + V VA+S L+ +G + +W LA ++ ++N+H
Sbjct: 285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH- 343
Query: 652 QSQITRLQW-LDNDLLVSVGQDCNTKIWEIA 681
+ +I+ L D L + D N KIW +
Sbjct: 344 EGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 90/195 (46%), Gaps = 12/195 (6%)
Query: 153 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGH 212
G ++AS ++IW + + H +G I D+AWS D+ +V + +
Sbjct: 38 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSNLLVSASDDKTL--K 93
Query: 213 VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS 272
++ +G + + G S + C+F P I++GS D ++ +++ T HS
Sbjct: 94 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGMCLKTLPAHS 152
Query: 273 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL---GNPAHKGGVYAVAWKPDGT 329
V AV ++ GS S+ +DG ++D AS + L NP V V + P+G
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP----VSFVKFSPNGK 208
Query: 330 QLLTASGDKTCKLWD 344
+L A+ D T KLWD
Sbjct: 209 YILAATLDNTLKLWD 223
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 101/222 (45%), Gaps = 18/222 (8%)
Query: 260 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 316
P + T H++ V +V++SP+G AS+ D + + YDG +S HK
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 68
Query: 317 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW---QGDY 373
G+ VAW D L++AS DKT K+WD+ + + + V C Q +
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNL 124
Query: 374 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 433
+++ S + DV ++ + H+ P++A+ + D + + S+DG W+ +
Sbjct: 125 IVSGSFDESVRIWDVKT-GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 434 GENDRVQGAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLS 473
G+ + ++ +K + G+ + +D+T+K D S
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 21/127 (16%)
Query: 563 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSAL 622
H V+ FSP+ E+L +S A + + ++ D + K H ++ VAWS DS L
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSDSNL 82
Query: 623 VASGSLDTTIIIWSLAS---------PAKHIIIKNAHPQSQITRLQWLDNDLLVSVGQDC 673
+ S S D T+ IW ++S + ++ N +PQS +L+VS D
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----------NLIVSGSFDE 132
Query: 674 NTKIWEI 680
+ +IW++
Sbjct: 133 SVRIWDV 139
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 121/302 (40%), Gaps = 32/302 (10%)
Query: 397 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDR-VQGAGHGNQINGMKATG 455
+ GH K ++++ SP+ + + S D I W A G+ ++ + G G +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 456 ELLYTCGIDDTIKQVDLSS-------NAYSGPEVKLGSQPRGLDIDENTLVTVTVKQ--- 505
LL + D T+K D+SS +S P+ N +V+ + +
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-----SNLIVSGSFDESVR 135
Query: 506 ISIVENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHL 564
I V+ G + +LP +P S++ + + L+ D I++ + D
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 565 GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWS---PDSA 621
PV+ FSP+ +Y++A+ + L+ + K + H + C+ +
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL--KTYTGHKNEKYCIFANFSVTGGK 253
Query: 622 LVASGSLDTTIIIWSLASPA--------KHIIIKNA-HPQSQITRLQWLDNDLLVSVGQ- 671
+ SGS D + IW+L + ++I A HP I L+ND + + +
Sbjct: 254 WIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 313
Query: 672 DC 673
DC
Sbjct: 314 DC 315
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 607 HSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWL-DNDL 665
H+ V+ V +SP+ +AS S D I IW A K + H + I+ + W D++L
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGH-KLGISDVAWSSDSNL 82
Query: 666 LVSVGQDCNTKIWEIA 681
LVS D KIW+++
Sbjct: 83 LVSASDDKTLKIWDVS 98
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 12/195 (6%)
Query: 153 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGH 212
G ++AS ++IW + + H +G I D+AWS D+ +V + +
Sbjct: 38 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSNLLVSASDDKTL--K 93
Query: 213 VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS 272
++ +G + + G S + C+F P I++GS D ++ +++ T HS
Sbjct: 94 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGMCLKTLPAHS 152
Query: 273 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL---GNPAHKGGVYAVAWKPDGT 329
V AV ++ GS S+ +DG ++D AS + L NP V V + P+G
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP----VSFVKFSPNGK 208
Query: 330 QLLTASGDKTCKLWD 344
+L A+ D KLWD
Sbjct: 209 YILAATLDNDLKLWD 223
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 84/182 (46%), Gaps = 16/182 (8%)
Query: 260 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 316
P + T H++ V +V++SP+G AS+ D + + YDG +S HK
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 68
Query: 317 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW---QGDY 373
G+ VAW D L++AS DKT K+WD+ + + + V C Q +
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL----KGHSNYVFCCNFNPQSNL 124
Query: 374 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 433
+++ S + DV ++ + H+ P++A+ + D + + S+DG W+ +
Sbjct: 125 IVSGSFDESVRIWDVKT-GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 434 GE 435
G+
Sbjct: 184 GQ 185
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 21/127 (16%)
Query: 563 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSAL 622
H V+ FSP+ E+L +S A + + ++ D + K H ++ VAWS DS L
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSDSNL 82
Query: 623 VASGSLDTTIIIWSLAS---------PAKHIIIKNAHPQSQITRLQWLDNDLLVSVGQDC 673
+ S S D T+ IW ++S + ++ N +PQS +L+VS D
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----------NLIVSGSFDE 132
Query: 674 NTKIWEI 680
+ +IW++
Sbjct: 133 SVRIWDV 139
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 121/302 (40%), Gaps = 32/302 (10%)
Query: 397 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDR-VQGAGHGNQINGMKATG 455
+ GH K ++++ SP+ + + S D I W A G+ ++ + G G +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 456 ELLYTCGIDDTIKQVDLSS-------NAYSGPEVKLGSQPRGLDIDENTLVTVTVKQ--- 505
LL + D T+K D+SS +S P+ N +V+ + +
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-----SNLIVSGSFDESVR 135
Query: 506 ISIVENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHL 564
I V+ G + +LP +P S++ + + L+ D I++ + D
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 565 GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWS---PDSA 621
PV+ FSP+ +Y++A+ + L+ + K + H + C+ +
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCL--KTYTGHKNEKYCIFANFSVTGGK 253
Query: 622 LVASGSLDTTIIIWSLASPA--------KHIIIKNA-HPQSQITRLQWLDNDLLVSVGQ- 671
+ SGS D + IW+L + ++I A HP I L+ND + + +
Sbjct: 254 WIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 313
Query: 672 DC 673
DC
Sbjct: 314 DC 315
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 607 HSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWL-DNDL 665
H+ V+ V +SP+ +AS S D I IW A K + H + I+ + W D++L
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGH-KLGISDVAWSSDSNL 82
Query: 666 LVSVGQDCNTKIWEIA 681
LVS D KIW+++
Sbjct: 83 LVSASDDKTLKIWDVS 98
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 113/269 (42%), Gaps = 28/269 (10%)
Query: 225 ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG 284
+SG P+ F P +++ SED TI V++ F+ T + H+ VQ + + SG
Sbjct: 104 LSGHRSPVTRVIFHPVFSV-MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 285 SHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWD 344
AS D + L+D + + + H V +V+ P+G +++AS DKT K+W+
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMH--GHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 345 IETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKP 404
++T V F G++ + V G + + S + V ++ H
Sbjct: 221 VQTGYCVKTFT-GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE-LREHRHV 278
Query: 405 ITALALSPDRGT--------------------VFTGSHDGFITRWNAKTGENDRVQGAGH 444
+ ++ +P+ + +GS D I W+ TG + GH
Sbjct: 279 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC-LMTLVGH 337
Query: 445 GNQINGM--KATGELLYTCGIDDTIKQVD 471
N + G+ + G+ + +C D T++ D
Sbjct: 338 DNWVRGVLFHSGGKFILSCADDKTLRVWD 366
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 29/192 (15%)
Query: 153 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGH 212
G IAS VR+W KE K E ++ I+W+P++ +
Sbjct: 246 GTLIASCSNDQTVRVWVVATKE--CKAELREHRHVVECISWAPES-------------SY 290
Query: 213 VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS 272
+SE S + SG+ P +++GS D TI +++ MT H
Sbjct: 291 SSISEATGSETKKSGKPGPF------------LLSGSRDKTIKMWDVSTGMCLMTLVGHD 338
Query: 273 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLL 332
+V+ V + G S D + ++D + + L AH+ V ++ + ++
Sbjct: 339 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN--AHEHFVTSLDFHKTAPYVV 396
Query: 333 TASGDKTCKLWD 344
T S D+T K+W+
Sbjct: 397 TGSVDQTVKVWE 408
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/230 (19%), Positives = 92/230 (40%), Gaps = 29/230 (12%)
Query: 143 SIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVV 202
S+++I G +AS +++WD E I H + ++ P+ +
Sbjct: 152 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECI--RTMHGHDHNVSSVSIMPNGDH--I 207
Query: 203 VGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRII-TGSEDNTIAVFEGPP 261
V R++ ++ +TG V +G + + +P++ +I + S D T+ V+
Sbjct: 208 VSASRDKTIKMWEVQTGYCVKTFTGHREWVRM--VRPNQDGTLIASCSNDQTVRVWVVAT 265
Query: 262 FKFKMTKQEHSRFVQAVRYSPSGSH--------------------FASAGFDGKVFLYDG 301
+ K +EH V+ + ++P S+ S D + ++D
Sbjct: 266 KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 325
Query: 302 ASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVV 351
++ + L H V V + G +L+ + DKT ++WD + K +
Sbjct: 326 STGMCLMTL--VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM 373
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Query: 527 ISLDHEHGLVAVGGADSKVHIYELNN-KSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH 585
IS DH L+A AD + +++ + + DH V+ S P+ +++V++
Sbjct: 156 ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDH--NVSSVSIMPNGDHIVSASRD 213
Query: 586 RKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLAS 639
+ + ++ V K + H V V + D L+AS S D T+ +W +A+
Sbjct: 214 KTIKMWEVQTGYCV--KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 265
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/316 (21%), Positives = 138/316 (43%), Gaps = 25/316 (7%)
Query: 153 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGH 212
G I SG +++W V + L+ GG WS + +++ +R
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGK-CLRTLVGHTGG-----VWSSQMRDNIIISGSTDRTLK 182
Query: 213 VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS 272
V+ +ETG + + G + + R +++GS D T+ V++ + H
Sbjct: 183 VWNAETGECIHTLYGHTSTVRCMHLHEKR---VVSGSRDATLRVWDIETGQCLHVLMGHV 239
Query: 273 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLL 332
V+ V+Y G S +D V ++D + + L H VY++ + DG ++
Sbjct: 240 AAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTL--QGHTNRVYSLQF--DGIHVV 293
Query: 333 TASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPS 392
+ S D + ++WD+ET + + + G+Q + + + L++ + + D+
Sbjct: 294 SGSLDTSIRVWDVETGNCI-HTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQ 350
Query: 393 TPIRVIKGHNKPITAL-ALSPDRGTVFTGSHDGFITRWNAKTGENDR----VQGAGHGNQ 447
++ ++G NK +A+ L ++ V T S DG + W+ KTGE R ++ G G
Sbjct: 351 C-LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 409
Query: 448 INGMKATGELLYTCGI 463
+ ++A+ L C +
Sbjct: 410 VWRIRASNTKL-VCAV 424
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 115/263 (43%), Gaps = 22/263 (8%)
Query: 244 RIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGAS 303
RI++GS+DNT+ V+ K T H+ V + + + S D + +++ +
Sbjct: 131 RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI--IISGSTDRTLKVWNAET 188
Query: 304 ADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQ 363
+ + L H V + ++++ S D T ++WDIET + +MG+
Sbjct: 189 GECIHTL--YGHTSTVRCMHLHEK--RVVSGSRDATLRVWDIETGQCL-HVLMGHVAA-- 241
Query: 364 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTP--IRVIKGHNKPITALALSPDRGTVFTGS 421
V C+ Q D VS + + V +P T + ++GH + +L D V +GS
Sbjct: 242 -VRCV-QYDGRRVVS-GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGS 296
Query: 422 HDGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSS----NAY 477
D I W+ +TG N GH + +GM+ +L + D T+K D+ +
Sbjct: 297 LDTSIRVWDVETG-NCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTL 355
Query: 478 SGPEVKLGSQPRGLDIDENTLVT 500
GP K S L ++N ++T
Sbjct: 356 QGPN-KHQSAVTCLQFNKNFVIT 377
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 115/288 (39%), Gaps = 56/288 (19%)
Query: 396 RVIKGHN-KPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKAT 454
+V+KGH+ IT L +R + +GS D + W+A TG+ R GH + +
Sbjct: 112 KVLKGHDDHVITCLQFCGNR--IVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMR 168
Query: 455 GELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLV--TVTVKQISIVENG 512
++ + D T+K NA +G + +TL T TV+ + +
Sbjct: 169 DNIIISGSTDRTLK----VWNAETGECI-------------HTLYGHTSTVRCMHL---- 207
Query: 513 AKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSF 572
HE +V+ G D+ + ++++ + H+ V +
Sbjct: 208 ------------------HEKRVVS-GSRDATLRVWDIETGQ-CLHVLMGHVAAVRCVQY 247
Query: 573 SPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTI 632
V S A+ +V P+ E + G H+ +V + + D V SGSLDT+I
Sbjct: 248 DGRR---VVSGAYDFMVKVWDPETETCLHTLQG-HTNRVYSLQF--DGIHVVSGSLDTSI 301
Query: 633 IIWSLASPAKHIIIKNAHPQSQITRLQWLDNDLLVSVGQDCNTKIWEI 680
+W + + I +T L +++LVS D KIW+I
Sbjct: 302 RVWDVETGN---CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDI 346
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 77/340 (22%), Positives = 133/340 (39%), Gaps = 70/340 (20%)
Query: 121 LKNEFHPIGGPIKDIGTLLSLTS----IRNILVLSIGFYIASGDISGKVRIWDTVNKEHI 176
L N + DI LL + I ++ + G Y+A G S +V++WD ++ +
Sbjct: 123 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 182
Query: 177 LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCD 236
H + ++W N ++ G R GH+ + +
Sbjct: 183 RNMTSH--SARVGSLSW---NSYILSSGS---RSGHIHHHDVRVA--------------- 219
Query: 237 FKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKV 296
++ +A G HS+ V +R++P G H AS G D V
Sbjct: 220 --------------EHHVATLSG-----------HSQEVCGLRWAPDGRHLASGGNDNLV 254
Query: 297 FLYDGASAD--LVSELGNPAHKGGVYAVAWKPDGTQLLTASG---DKTCKLWDIETKSVV 351
++ A + V H+G V AVAW P + +L G D+ ++W++ + + +
Sbjct: 255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 314
Query: 352 SEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFI-SYLDVNNPSTPIRV--IKGHNKPITAL 408
S +QV S LW Y +S GF + L + T +V +KGH + +L
Sbjct: 315 SAVDAHSQV----CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSL 370
Query: 409 ALSPDRGTVFTGSHDGFITRWN------AKTGENDRVQGA 442
+SPD TV + + D + W A+ E ++ A
Sbjct: 371 TMSPDGATVASAAADETLRLWRCFELDPARRREREKASAA 410
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 25/203 (12%)
Query: 234 SCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD 293
+C + PS P RI+ + P + + ++ V +S SG+ A A D
Sbjct: 85 TCRYIPSLPDRIL-----------DAPEIR-------NDYYLNLVDWS-SGNVLAVA-LD 124
Query: 294 GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSE 353
V+L+ +S D++ L + +VAW +G L + +LWD++ + +
Sbjct: 125 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184
Query: 354 FIMGNQVEDQQVSCLWQGDYLLTV-SLSGFISYLDVNNPSTPIRVIKGHNKPITALALSP 412
+V L Y+L+ S SG I + DV + + GH++ + L +P
Sbjct: 185 MTS----HSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 240
Query: 413 DRGTVFTGSHDGFITRWNAKTGE 435
D + +G +D + W + GE
Sbjct: 241 DGRHLASGGNDNLVNVWPSAPGE 263
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 68/311 (21%), Positives = 128/311 (41%), Gaps = 43/311 (13%)
Query: 331 LLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW--QGDYLLTVSLSGFISYLDV 388
+L + D + LW + ++ + + Q + S W +G+YL + S + DV
Sbjct: 118 VLAVALDNSVYLWSASSGDIL-QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 176
Query: 389 NNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQI 448
+R + H+ + +L S + + +GS G I + + E+ +GH ++
Sbjct: 177 QQQKR-LRNMTSHSARVGSL--SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV 233
Query: 449 NGMKAT--GELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQI 506
G++ G L + G D+ + N + + G P L T T Q
Sbjct: 234 CGLRWAPDGRHLASGGNDNLV-------NVWPSAPGEGGWVP---------LQTFTQHQG 277
Query: 507 SIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGP 566
++ V+ P + ++A GG S HI N S + + +D
Sbjct: 278 AV----KAVAWCPW-----------QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ 322
Query: 567 VTDCSFSPSNEYLVASD--AHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVA 624
V +SP + L++ A ++V+++ P +A E H+++V + SPD A VA
Sbjct: 323 VCSILWSPHYKELISGHGFAQNQLVIWKYPT--MAKVAELKGHTSRVLSLTMSPDGATVA 380
Query: 625 SGSLDTTIIIW 635
S + D T+ +W
Sbjct: 381 SAAADETLRLW 391
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 103/259 (39%), Gaps = 38/259 (14%)
Query: 97 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYI 156
G Y+A G S +V++WD ++ + H +G+ LS S + +
Sbjct: 159 GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS-----ARVGS-LSWNS----------YIL 202
Query: 157 ASGDISGKVRIWDTVNKEH---ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHV 213
+SG SG + D EH L + G + W+PD + + G + +V
Sbjct: 203 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCG----LRWAPDGRHL--ASGGNDNLVNV 256
Query: 214 FMSETG-------TSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM 266
+ S G + + G K + C ++ S G+ D I ++
Sbjct: 257 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ-SNVLATGGGTSDRHIRIWNVCSGACLS 315
Query: 267 TKQEHSRFVQAVRYSPSGSHFASA-GF-DGKVFLYDGASADLVSELGNPAHKGGVYAVAW 324
HS+ V ++ +SP S GF ++ ++ + V+EL H V ++
Sbjct: 316 AVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL--KGHTSRVLSLTM 372
Query: 325 KPDGTQLLTASGDKTCKLW 343
PDG + +A+ D+T +LW
Sbjct: 373 SPDGATVASAAADETLRLW 391
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 77/340 (22%), Positives = 133/340 (39%), Gaps = 70/340 (20%)
Query: 121 LKNEFHPIGGPIKDIGTLLSLTS----IRNILVLSIGFYIASGDISGKVRIWDTVNKEHI 176
L N + DI LL + I ++ + G Y+A G S +V++WD ++ +
Sbjct: 134 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 193
Query: 177 LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCD 236
H + ++W N ++ G R GH+ + +
Sbjct: 194 RNMTSH--SARVGSLSW---NSYILSSGS---RSGHIHHHDVRVA--------------- 230
Query: 237 FKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKV 296
++ +A G HS+ V +R++P G H AS G D V
Sbjct: 231 --------------EHHVATLSG-----------HSQEVCGLRWAPDGRHLASGGNDNLV 265
Query: 297 FLYDGASAD--LVSELGNPAHKGGVYAVAWKPDGTQLLTASG---DKTCKLWDIETKSVV 351
++ A + V H+G V AVAW P + +L G D+ ++W++ + + +
Sbjct: 266 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 325
Query: 352 SEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFI-SYLDVNNPSTPIRV--IKGHNKPITAL 408
S +QV S LW Y +S GF + L + T +V +KGH + +L
Sbjct: 326 SAVDAHSQV----CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSL 381
Query: 409 ALSPDRGTVFTGSHDGFITRWN------AKTGENDRVQGA 442
+SPD TV + + D + W A+ E ++ A
Sbjct: 382 TMSPDGATVASAAADETLRLWRCFELDPARRREREKASAA 421
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 25/203 (12%)
Query: 234 SCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD 293
+C + PS P RI+ + P + + ++ V +S SG+ A A D
Sbjct: 96 TCRYIPSLPDRIL-----------DAPEIR-------NDYYLNLVDWS-SGNVLAVA-LD 135
Query: 294 GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSE 353
V+L+ +S D++ L + +VAW +G L + +LWD++ + +
Sbjct: 136 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 195
Query: 354 FIMGNQVEDQQVSCLWQGDYLLTV-SLSGFISYLDVNNPSTPIRVIKGHNKPITALALSP 412
+V L Y+L+ S SG I + DV + + GH++ + L +P
Sbjct: 196 MTS----HSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 251
Query: 413 DRGTVFTGSHDGFITRWNAKTGE 435
D + +G +D + W + GE
Sbjct: 252 DGRHLASGGNDNLVNVWPSAPGE 274
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 68/311 (21%), Positives = 128/311 (41%), Gaps = 43/311 (13%)
Query: 331 LLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW--QGDYLLTVSLSGFISYLDV 388
+L + D + LW + ++ + + Q + S W +G+YL + S + DV
Sbjct: 129 VLAVALDNSVYLWSASSGDIL-QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 187
Query: 389 NNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQI 448
+R + H+ + +L S + + +GS G I + + E+ +GH ++
Sbjct: 188 QQQKR-LRNMTSHSARVGSL--SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV 244
Query: 449 NGMKAT--GELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQI 506
G++ G L + G D+ + N + + G P L T T Q
Sbjct: 245 CGLRWAPDGRHLASGGNDNLV-------NVWPSAPGEGGWVP---------LQTFTQHQG 288
Query: 507 SIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGP 566
++ V+ P + ++A GG S HI N S + + +D
Sbjct: 289 AV----KAVAWCPW-----------QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ 333
Query: 567 VTDCSFSPSNEYLVASD--AHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVA 624
V +SP + L++ A ++V+++ P +A E H+++V + SPD A VA
Sbjct: 334 VCSILWSPHYKELISGHGFAQNQLVIWKYPT--MAKVAELKGHTSRVLSLTMSPDGATVA 391
Query: 625 SGSLDTTIIIW 635
S + D T+ +W
Sbjct: 392 SAAADETLRLW 402
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 106/260 (40%), Gaps = 40/260 (15%)
Query: 97 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYI 156
G Y+A G S +V++WD V ++ L+N ++ S R + LS YI
Sbjct: 170 GNYLAVGTSSAEVQLWD-VQQQKRLRN---------------MTSHSAR-VGSLSWNSYI 212
Query: 157 -ASGDISGKVRIWDTVNKEH---ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGH 212
+SG SG + D EH L + G + W+PD + + G + +
Sbjct: 213 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCG----LRWAPDGRHL--ASGGNDNLVN 266
Query: 213 VFMSETG-------TSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK 265
V+ S G + + G K + C ++ S G+ D I ++
Sbjct: 267 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ-SNVLATGGGTSDRHIRIWNVCSGACL 325
Query: 266 MTKQEHSRFVQAVRYSPSGSHFASA-GF-DGKVFLYDGASADLVSELGNPAHKGGVYAVA 323
HS+ V ++ +SP S GF ++ ++ + V+EL H V ++
Sbjct: 326 SAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL--KGHTSRVLSLT 382
Query: 324 WKPDGTQLLTASGDKTCKLW 343
PDG + +A+ D+T +LW
Sbjct: 383 MSPDGATVASAAADETLRLW 402
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/323 (22%), Positives = 127/323 (39%), Gaps = 64/323 (19%)
Query: 121 LKNEFHPIGGPIKDIGTLLSLTS----IRNILVLSIGFYIASGDISGKVRIWDTVNKEHI 176
L N + DI LL + I ++ + G Y+A G S +V++WD ++ +
Sbjct: 43 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 102
Query: 177 LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCD 236
H + ++W N ++ G R GH+ + +
Sbjct: 103 RNMTSH--SARVGSLSW---NSYILSSGS---RSGHIHHHDVRVA--------------- 139
Query: 237 FKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKV 296
++ +A G HS+ V +R++P G H AS G D V
Sbjct: 140 --------------EHHVATLSG-----------HSQEVCGLRWAPDGRHLASGGNDNLV 174
Query: 297 FLYDGASAD--LVSELGNPAHKGGVYAVAWKPDGTQLLTASG---DKTCKLWDIETKSVV 351
++ A + V H+G V AVAW P + +L G D+ ++W++ + + +
Sbjct: 175 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 234
Query: 352 SEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFI-SYLDVNNPSTPIRV--IKGHNKPITAL 408
S +QV S LW Y +S GF + L + T +V +KGH + +L
Sbjct: 235 SAVDAHSQV----CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSL 290
Query: 409 ALSPDRGTVFTGSHDGFITRWNA 431
+SPD TV + + D + W
Sbjct: 291 TMSPDGATVASAAADETLRLWRC 313
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 87/207 (42%), Gaps = 25/207 (12%)
Query: 234 SCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD 293
+C + PS P RI+ + P + + ++ V +S SG+ A A D
Sbjct: 5 TCRYIPSLPDRIL-----------DAPEIR-------NDYYLNLVDWS-SGNVLAVA-LD 44
Query: 294 GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSE 353
V+L+ +S D++ L + +VAW +G L + +LWD++ + +
Sbjct: 45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 104
Query: 354 FIMGNQVEDQQVSCLWQGDYLLTV-SLSGFISYLDVNNPSTPIRVIKGHNKPITALALSP 412
+V L Y+L+ S SG I + DV + + GH++ + L +P
Sbjct: 105 MTS----HSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160
Query: 413 DRGTVFTGSHDGFITRWNAKTGENDRV 439
D + +G +D + W + GE V
Sbjct: 161 DGRHLASGGNDNLVNVWPSAPGEGGWV 187
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/311 (21%), Positives = 128/311 (41%), Gaps = 43/311 (13%)
Query: 331 LLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW--QGDYLLTVSLSGFISYLDV 388
+L + D + LW + ++ + + Q + S W +G+YL + S + DV
Sbjct: 38 VLAVALDNSVYLWSASSGDIL-QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 96
Query: 389 NNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQI 448
+R + H+ + +L S + + +GS G I + + E+ +GH ++
Sbjct: 97 QQQKR-LRNMTSHSARVGSL--SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV 153
Query: 449 NGMKAT--GELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQI 506
G++ G L + G D+ + N + + G P L T T Q
Sbjct: 154 CGLRWAPDGRHLASGGNDNLV-------NVWPSAPGEGGWVP---------LQTFTQHQG 197
Query: 507 SIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGP 566
++ V+ P + ++A GG S HI N S + + +D
Sbjct: 198 AV----KAVAWCPW-----------QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ 242
Query: 567 VTDCSFSPSNEYLVASD--AHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVA 624
V +SP + L++ A ++V+++ P +A E H+++V + SPD A VA
Sbjct: 243 VCSILWSPHYKELISGHGFAQNQLVIWKYP--TMAKVAELKGHTSRVLSLTMSPDGATVA 300
Query: 625 SGSLDTTIIIW 635
S + D T+ +W
Sbjct: 301 SAAADETLRLW 311
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 103/259 (39%), Gaps = 38/259 (14%)
Query: 97 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYI 156
G Y+A G S +V++WD ++ + H +G+ LS S + +
Sbjct: 79 GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS-----ARVGS-LSWNS----------YIL 122
Query: 157 ASGDISGKVRIWDTVNKEH---ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHV 213
+SG SG + D EH L + G + W+PD + + G + +V
Sbjct: 123 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCG----LRWAPDGRHL--ASGGNDNLVNV 176
Query: 214 FMSETG-------TSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM 266
+ S G + + G K + C ++ S G+ D I ++
Sbjct: 177 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ-SNVLATGGGTSDRHIRIWNVCSGACLS 235
Query: 267 TKQEHSRFVQAVRYSPSGSHFASA-GF-DGKVFLYDGASADLVSELGNPAHKGGVYAVAW 324
HS+ V ++ +SP S GF ++ ++ + V+EL H V ++
Sbjct: 236 AVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL--KGHTSRVLSLTM 292
Query: 325 KPDGTQLLTASGDKTCKLW 343
PDG + +A+ D+T +LW
Sbjct: 293 SPDGATVASAAADETLRLW 311
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 98/202 (48%), Gaps = 13/202 (6%)
Query: 157 ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVV---VGEGRERFGHV 213
AS + +R+WD N + I + P+ +A+SPD+Q + VG+ ++
Sbjct: 96 ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT--LAFSPDSQYLATGTHVGKV-----NI 148
Query: 214 FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSR 273
F E+G + + K I S + P + + +G+ D I +F+ K T + H+
Sbjct: 149 FGVESGKKEYSLDTRGKFILSIAYSPDGKY-LASGAIDGIINIFDIATGKLLHTLEGHAM 207
Query: 274 FVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLT 333
++++ +SP +A DG + +YD A+L L H V VA+ PD T ++
Sbjct: 208 PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL--SGHASWVLNVAFCPDDTHFVS 265
Query: 334 ASGDKTCKLWDIETKSVVSEFI 355
+S DK+ K+WD+ T++ V F
Sbjct: 266 SSSDKSVKVWDVGTRTCVHTFF 287
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 96/215 (44%), Gaps = 33/215 (15%)
Query: 93 YSPSGFYIASGDISGKVRIW--DTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVL 150
+SP Y+A+G GKV I+ ++ KE+ L R +L
Sbjct: 130 FSPDSQYLATGTHVGKVNIFGVESGKKEYSLDT---------------------RGKFIL 168
Query: 151 SIGF-----YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGE 205
SI + Y+ASG I G + I+D + + E H + PI+ + +SPD+Q +V +
Sbjct: 169 SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAM--PIRSLTFSPDSQLLVTASD 226
Query: 206 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK 265
+ + ++ + G +SG + + + F P ++ S D ++ V++
Sbjct: 227 --DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT-HFVSSSSDKSVKVWDVGTRTCV 283
Query: 266 MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYD 300
T +H V V+Y+ +GS S G D ++ +YD
Sbjct: 284 HTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 84/191 (43%), Gaps = 8/191 (4%)
Query: 245 IITGSEDNTIAVFE--GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGA 302
++TGS D+ + V++ + + + H V +V S + AS+ D + L+D
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110
Query: 303 SADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET-KSVVSEFIMGNQVE 361
+ + + A + +A+ PD L T + ++ +E+ K S G +
Sbjct: 111 NGKQIKSI--DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL 168
Query: 362 DQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS 421
S G YL + ++ G I+ D+ + ++GH PI +L SPD + T S
Sbjct: 169 SIAYSP--DGKYLASGAIDGIINIFDIATGKL-LHTLEGHAMPIRSLTFSPDSQLLVTAS 225
Query: 422 HDGFITRWNAK 432
DG+I ++ +
Sbjct: 226 DDGYIKIYDVQ 236
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 14/160 (8%)
Query: 526 SISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVT--DCSFSPSNEYLVASD 583
S+ + H + A D+ + +++L N + GPV +FSP ++YL
Sbjct: 85 SVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA---GPVDAWTLAFSPDSQYLATGT 141
Query: 584 AHRKVVLYRVPDFELAHNKEWGFHSAK--VNCVAWSPDSALVASGSLDTTIIIWSLAS-P 640
KV ++ V + KE+ + + +A+SPD +ASG++D I I+ +A+
Sbjct: 142 HVGKVNIFGVE----SGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK 197
Query: 641 AKHIIIKNAHPQSQITRLQWLDNDLLVSVGQDCNTKIWEI 680
H + +A P +T D+ LLV+ D KI+++
Sbjct: 198 LLHTLEGHAMPIRSLTFSP--DSQLLVTASDDGYIKIYDV 235
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 101/244 (41%), Gaps = 42/244 (17%)
Query: 399 KGHNKPITALALSPDRG----TVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKAT 454
+ H+ I ++A ++ TV TGS D + W + D +Q + G+Q+
Sbjct: 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-LQWSLEGHQLG----- 82
Query: 455 GELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAK 514
+ VD+S L + R D++ KQI ++ G
Sbjct: 83 ------------VVSVDISHTLPIAASSSLDAHIRLWDLENG-------KQIKSIDAG-- 121
Query: 515 VSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGP-VTDCSFS 573
P+D + S D ++ +A G KV+I+ + +S + LD G + ++S
Sbjct: 122 ----PVDAWTLAFSPDSQY--LATGTHVGKVNIFGV--ESGKKEYSLDTRGKFILSIAYS 173
Query: 574 PSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTII 633
P +YL + + ++ + +L H E H+ + + +SPDS L+ + S D I
Sbjct: 174 PDGKYLASGAIDGIINIFDIATGKLLHTLE--GHAMPIRSLTFSPDSQLLVTASDDGYIK 231
Query: 634 IWSL 637
I+ +
Sbjct: 232 IYDV 235
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 6/129 (4%)
Query: 314 AHKGGVYAVAW----KPDGTQLLTASGDKTCKLWDIETKSVVSEF-IMGNQVEDQQVSCL 368
AH +++VAW K + ++T S D K+W + + ++ + G+Q+ V
Sbjct: 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDIS 89
Query: 369 WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITR 428
+ SL I D+ N I+ I LA SPD + TG+H G +
Sbjct: 90 HTLPIAASSSLDAHIRLWDLEN-GKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNI 148
Query: 429 WNAKTGEND 437
+ ++G+ +
Sbjct: 149 FGVESGKKE 157
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 114/285 (40%), Gaps = 24/285 (8%)
Query: 156 IASGDISGKVRIWD--TVNKEH--------ILKNEFHPIGGPIKDIAWSPDNQRMVVVGE 205
+ S GK+ IWD T NK H ++ + P G + DN + +
Sbjct: 81 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA--CGGLDN--ICSIYN 136
Query: 206 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK 265
+ R G+V +S E++G + ++ C F +I+T S D T A+++ +
Sbjct: 137 LKTREGNVRVSR------ELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQT 188
Query: 266 MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWK 325
T H+ V ++ +P F S D L+D + H+ + A+ +
Sbjct: 189 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQTFTGHESDINAICFF 246
Query: 326 PDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISY 385
P+G T S D TC+L+D+ + + N + + LL F
Sbjct: 247 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 306
Query: 386 LDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 430
+ + V+ GH+ ++ L ++ D V TGS D F+ WN
Sbjct: 307 VWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 100/260 (38%), Gaps = 22/260 (8%)
Query: 88 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNI 147
V Y+PSG Y+A G + I++ +E ++ G G L + +
Sbjct: 111 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT----GYLSCCRFLDDN 166
Query: 148 LVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR 207
+++ +SGD + +WD + H G + ++ +PD R+ V G
Sbjct: 167 QIVT-----SSGDTT--CALWDIETGQQTTTFTGHT--GDVMSLSLAPDT-RLFVSGAC- 215
Query: 208 ERFGHVFMSETGTSVGEISGQSKPINS-CDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM 266
+ ++ G +G IN+ C F F TGS+D T +F+ + M
Sbjct: 216 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF--ATGSDDATCRLFDLRADQELM 273
Query: 267 TKQEHSRF--VQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW 324
T + + +V +S SG + D ++D AD L H V +
Sbjct: 274 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL--AGHDNRVSCLGV 331
Query: 325 KPDGTQLLTASGDKTCKLWD 344
DG + T S D K+W+
Sbjct: 332 TDDGMAVATGSWDSFLKIWN 351
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Query: 536 VAVGGADSKVHIYELNNKSLSPKAELD---HLGPVTDCSFSPSNEYLVASDAHRKVVLYR 592
VA GG D+ IY L + + + + H G ++ C F N+ +V S L+
Sbjct: 123 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWD 181
Query: 593 VPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSL 637
+ + H+ V ++ +PD+ L SG+ D + +W +
Sbjct: 182 IETGQQTTTFT--GHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 224
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 65/328 (19%), Positives = 116/328 (35%), Gaps = 47/328 (14%)
Query: 315 HKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW--QGD 372
H +YA+ W D L++AS D +WD T + V + + ++C + G+
Sbjct: 65 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS---WVMTCAYAPSGN 121
Query: 373 YLLTVSLSGFISYLDVNNPSTPIRV---IKGHNKPITALALSPDRGTVFTGSHDGFITRW 429
Y+ L S ++ +RV + GH ++ D + T S D W
Sbjct: 122 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALW 180
Query: 430 NAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPR 489
+ +TG+ G+ ++ A L+ G D KL
Sbjct: 181 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD--------------ASAKLWDVRE 226
Query: 490 GLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYE 549
G+ T + I NG A G D+ +++
Sbjct: 227 GMCRQTFTGHESDINAICFFPNG---------------------NAFATGSDDATCRLFD 265
Query: 550 LN-NKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHS 608
L ++ L + + + +T SFS S L+A ++ + A H
Sbjct: 266 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA--GVLAGHD 323
Query: 609 AKVNCVAWSPDSALVASGSLDTTIIIWS 636
+V+C+ + D VA+GS D+ + IW+
Sbjct: 324 NRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 55/288 (19%), Positives = 105/288 (36%), Gaps = 42/288 (14%)
Query: 396 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATG 455
R ++GH I A+ D + + S DG + W++ T N+++ +
Sbjct: 60 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT-----------NKVHAIPLRS 108
Query: 456 ELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKV 515
+ TC A SG V G GLD ++ + E +V
Sbjct: 109 SWVMTCAY------------APSGNYVACG----GLD------NICSIYNLKTREGNVRV 146
Query: 516 S---SLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSF 572
S + Y LD + + G D+ ++++ + H G V S
Sbjct: 147 SRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIETGQQTTTFTG-HTGDVMSLSL 203
Query: 573 SPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTI 632
+P V+ L+ V E + + H + +N + + P+ A+GS D T
Sbjct: 204 APDTRLFVSGACDASAKLWDVR--EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 261
Query: 633 IIWSLASPAKHIIIKNAHPQSQITRLQWLDNDLLVSVG-QDCNTKIWE 679
++ L + + + + + IT + + + L+ G D N +W+
Sbjct: 262 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 309
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 114/285 (40%), Gaps = 24/285 (8%)
Query: 156 IASGDISGKVRIWD--TVNKEH--------ILKNEFHPIGGPIKDIAWSPDNQRMVVVGE 205
+ S GK+ IWD T NK H ++ + P G + DN + +
Sbjct: 70 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA--CGGLDN--ICSIYN 125
Query: 206 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK 265
+ R G+V +S E++G + ++ C F +I+T S D T A+++ +
Sbjct: 126 LKTREGNVRVSR------ELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQT 177
Query: 266 MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWK 325
T H+ V ++ +P F S D L+D + H+ + A+ +
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQTFTGHESDINAICFF 235
Query: 326 PDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISY 385
P+G T S D TC+L+D+ + + N + + LL F
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295
Query: 386 LDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 430
+ + V+ GH+ ++ L ++ D V TGS D F+ WN
Sbjct: 296 VWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 100/260 (38%), Gaps = 22/260 (8%)
Query: 88 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNI 147
V Y+PSG Y+A G + I++ +E ++ G G L + +
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT----GYLSCCRFLDDN 155
Query: 148 LVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR 207
+++ +SGD + +WD + H G + ++ +PD R+ V G
Sbjct: 156 QIVT-----SSGDTT--CALWDIETGQQTTTFTGHT--GDVMSLSLAPDT-RLFVSGAC- 204
Query: 208 ERFGHVFMSETGTSVGEISGQSKPINS-CDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM 266
+ ++ G +G IN+ C F F TGS+D T +F+ + M
Sbjct: 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF--ATGSDDATCRLFDLRADQELM 262
Query: 267 TKQEHSRF--VQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW 324
T + + +V +S SG + D ++D AD L H V +
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL--AGHDNRVSCLGV 320
Query: 325 KPDGTQLLTASGDKTCKLWD 344
DG + T S D K+W+
Sbjct: 321 TDDGMAVATGSWDSFLKIWN 340
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Query: 536 VAVGGADSKVHIYELNNKSLSPKAELD---HLGPVTDCSFSPSNEYLVASDAHRKVVLYR 592
VA GG D+ IY L + + + + H G ++ C F N+ +V S L+
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWD 170
Query: 593 VPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSL 637
+ + H+ V ++ +PD+ L SG+ D + +W +
Sbjct: 171 IETGQQTTTFT--GHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 65/328 (19%), Positives = 116/328 (35%), Gaps = 47/328 (14%)
Query: 315 HKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW--QGD 372
H +YA+ W D L++AS D +WD T + V + + ++C + G+
Sbjct: 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS---WVMTCAYAPSGN 110
Query: 373 YLLTVSLSGFISYLDVNNPSTPIRV---IKGHNKPITALALSPDRGTVFTGSHDGFITRW 429
Y+ L S ++ +RV + GH ++ D + T S D W
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALW 169
Query: 430 NAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPR 489
+ +TG+ G+ ++ A L+ G D KL
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD--------------ASAKLWDVRE 215
Query: 490 GLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYE 549
G+ T + I NG A G D+ +++
Sbjct: 216 GMCRQTFTGHESDINAICFFPNG---------------------NAFATGSDDATCRLFD 254
Query: 550 LN-NKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHS 608
L ++ L + + + +T SFS S L+A ++ + A H
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA--GVLAGHD 312
Query: 609 AKVNCVAWSPDSALVASGSLDTTIIIWS 636
+V+C+ + D VA+GS D+ + IW+
Sbjct: 313 NRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 55/288 (19%), Positives = 105/288 (36%), Gaps = 42/288 (14%)
Query: 396 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATG 455
R ++GH I A+ D + + S DG + W++ T N+++ +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT-----------NKVHAIPLRS 97
Query: 456 ELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKV 515
+ TC A SG V G GLD ++ + E +V
Sbjct: 98 SWVMTCAY------------APSGNYVACG----GLD------NICSIYNLKTREGNVRV 135
Query: 516 S---SLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSF 572
S + Y LD + + G D+ ++++ + H G V S
Sbjct: 136 SRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIETGQQTTTFTG-HTGDVMSLSL 192
Query: 573 SPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTI 632
+P V+ L+ V E + + H + +N + + P+ A+GS D T
Sbjct: 193 APDTRLFVSGACDASAKLWDVR--EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 633 IIWSLASPAKHIIIKNAHPQSQITRLQWLDNDLLVSVG-QDCNTKIWE 679
++ L + + + + + IT + + + L+ G D N +W+
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 114/285 (40%), Gaps = 24/285 (8%)
Query: 156 IASGDISGKVRIWD--TVNKEH--------ILKNEFHPIGGPIKDIAWSPDNQRMVVVGE 205
+ S GK+ IWD T NK H ++ + P G + DN + +
Sbjct: 70 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA--CGGLDN--ICSIYN 125
Query: 206 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK 265
+ R G+V +S E++G + ++ C F +I+T S D T A+++ +
Sbjct: 126 LKTREGNVRVSR------ELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQT 177
Query: 266 MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWK 325
T H+ V ++ +P F S D L+D + H+ + A+ +
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQTFTGHESDINAICFF 235
Query: 326 PDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISY 385
P+G T S D TC+L+D+ + + N + + LL F
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295
Query: 386 LDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 430
+ + V+ GH+ ++ L ++ D V TGS D F+ WN
Sbjct: 296 VWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 100/260 (38%), Gaps = 22/260 (8%)
Query: 88 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNI 147
V Y+PSG Y+A G + I++ +E ++ G G L + +
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT----GYLSCCRFLDDN 155
Query: 148 LVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR 207
+++ +SGD + +WD + H G + ++ +PD R+ V G
Sbjct: 156 QIVT-----SSGDTT--CALWDIETGQQTTTFTGHT--GDVMSLSLAPDT-RLFVSGAC- 204
Query: 208 ERFGHVFMSETGTSVGEISGQSKPINS-CDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM 266
+ ++ G +G IN+ C F F TGS+D T +F+ + M
Sbjct: 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF--ATGSDDATCRLFDLRADQELM 262
Query: 267 TKQEHSRF--VQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW 324
T + + +V +S SG + D ++D AD L H V +
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL--AGHDNRVSCLGV 320
Query: 325 KPDGTQLLTASGDKTCKLWD 344
DG + T S D K+W+
Sbjct: 321 TDDGMAVATGSWDSFLKIWN 340
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Query: 536 VAVGGADSKVHIYELNNKSLSPKAELD---HLGPVTDCSFSPSNEYLVASDAHRKVVLYR 592
VA GG D+ IY L + + + + H G ++ C F N+ +V S L+
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWD 170
Query: 593 VPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSL 637
+ + H+ V ++ +PD+ L SG+ D + +W +
Sbjct: 171 IETGQQTTTFT--GHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 65/328 (19%), Positives = 116/328 (35%), Gaps = 47/328 (14%)
Query: 315 HKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW--QGD 372
H +YA+ W D L++AS D +WD T + V + + ++C + G+
Sbjct: 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS---WVMTCAYAPSGN 110
Query: 373 YLLTVSLSGFISYLDVNNPSTPIRV---IKGHNKPITALALSPDRGTVFTGSHDGFITRW 429
Y+ L S ++ +RV + GH ++ D + T S D W
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALW 169
Query: 430 NAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPR 489
+ +TG+ G+ ++ A L+ G D KL
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD--------------ASAKLWDVRE 215
Query: 490 GLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYE 549
G+ T + I NG A G D+ +++
Sbjct: 216 GMCRQTFTGHESDINAICFFPNG---------------------NAFATGSDDATCRLFD 254
Query: 550 LN-NKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHS 608
L ++ L + + + +T SFS S L+A ++ + A H
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA--GVLAGHD 312
Query: 609 AKVNCVAWSPDSALVASGSLDTTIIIWS 636
+V+C+ + D VA+GS D+ + IW+
Sbjct: 313 NRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 55/288 (19%), Positives = 105/288 (36%), Gaps = 42/288 (14%)
Query: 396 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATG 455
R ++GH I A+ D + + S DG + W++ T N+++ +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT-----------NKVHAIPLRS 97
Query: 456 ELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKV 515
+ TC A SG V G GLD ++ + E +V
Sbjct: 98 SWVMTCAY------------APSGNYVACG----GLD------NICSIYNLKTREGNVRV 135
Query: 516 S---SLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSF 572
S + Y LD + + G D+ ++++ + H G V S
Sbjct: 136 SRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIETGQQTTTFTG-HTGDVMSLSL 192
Query: 573 SPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTI 632
+P V+ L+ V E + + H + +N + + P+ A+GS D T
Sbjct: 193 APDTRLFVSGACDASAKLWDVR--EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 633 IIWSLASPAKHIIIKNAHPQSQITRLQWLDNDLLVSVG-QDCNTKIWE 679
++ L + + + + + IT + + + L+ G D N +W+
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 114/285 (40%), Gaps = 24/285 (8%)
Query: 156 IASGDISGKVRIWD--TVNKEH--------ILKNEFHPIGGPIKDIAWSPDNQRMVVVGE 205
+ S GK+ IWD T NK H ++ + P G + DN + +
Sbjct: 70 LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA--CGGLDN--ICSIYN 125
Query: 206 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK 265
+ R G+V +S E++G + ++ C F +I+T S D T A+++ +
Sbjct: 126 LKTREGNVRVSR------ELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQT 177
Query: 266 MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWK 325
T H+ V ++ +P F S D L+D + H+ + A+ +
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQTFTGHESDINAICFF 235
Query: 326 PDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISY 385
P+G T S D TC+L+D+ + + N + + LL F
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295
Query: 386 LDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 430
+ + V+ GH+ ++ L ++ D V TGS D F+ WN
Sbjct: 296 VWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 100/260 (38%), Gaps = 22/260 (8%)
Query: 88 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNI 147
V Y+PSG Y+A G + I++ +E ++ G G L + +
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT----GYLSCCRFLDDN 155
Query: 148 LVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR 207
+++ +SGD + +WD + H G + ++ +PD R+ V G
Sbjct: 156 QIVT-----SSGDTT--CALWDIETGQQTTTFTGHT--GDVMSLSLAPDT-RLFVSGAC- 204
Query: 208 ERFGHVFMSETGTSVGEISGQSKPINS-CDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM 266
+ ++ G +G IN+ C F F TGS+D T +F+ + M
Sbjct: 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF--ATGSDDATCRLFDLRADQELM 262
Query: 267 TKQEHSRF--VQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW 324
T + + +V +S SG + D ++D AD L H V +
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL--AGHDNRVSCLGV 320
Query: 325 KPDGTQLLTASGDKTCKLWD 344
DG + T S D K+W+
Sbjct: 321 TDDGMAVATGSWDSFLKIWN 340
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Query: 536 VAVGGADSKVHIYELNNKSLSPKAELD---HLGPVTDCSFSPSNEYLVASDAHRKVVLYR 592
VA GG D+ IY L + + + + H G ++ C F N+ +V S L+
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWD 170
Query: 593 VPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSL 637
+ + H+ V ++ +PD+ L SG+ D + +W +
Sbjct: 171 IETGQQTTTFT--GHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 66/328 (20%), Positives = 116/328 (35%), Gaps = 47/328 (14%)
Query: 315 HKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW--QGD 372
H +YA+ W D LL+AS D +WD T + V + + ++C + G+
Sbjct: 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSS---WVMTCAYAPSGN 110
Query: 373 YLLTVSLSGFISYLDVNNPSTPIRV---IKGHNKPITALALSPDRGTVFTGSHDGFITRW 429
Y+ L S ++ +RV + GH ++ D + T S D W
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALW 169
Query: 430 NAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPR 489
+ +TG+ G+ ++ A L+ G D KL
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD--------------ASAKLWDVRE 215
Query: 490 GLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYE 549
G+ T + I NG A G D+ +++
Sbjct: 216 GMCRQTFTGHESDINAICFFPNG---------------------NAFATGSDDATCRLFD 254
Query: 550 LN-NKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHS 608
L ++ L + + + +T SFS S L+A ++ + A H
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA--GVLAGHD 312
Query: 609 AKVNCVAWSPDSALVASGSLDTTIIIWS 636
+V+C+ + D VA+GS D+ + IW+
Sbjct: 313 NRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 55/288 (19%), Positives = 105/288 (36%), Gaps = 42/288 (14%)
Query: 396 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATG 455
R ++GH I A+ D + + S DG + W++ T N+++ +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT-----------NKVHAIPLRS 97
Query: 456 ELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKV 515
+ TC A SG V G GLD ++ + E +V
Sbjct: 98 SWVMTCAY------------APSGNYVACG----GLD------NICSIYNLKTREGNVRV 135
Query: 516 S---SLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSF 572
S + Y LD + + G D+ ++++ + H G V S
Sbjct: 136 SRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIETGQQTTTFTG-HTGDVMSLSL 192
Query: 573 SPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTI 632
+P V+ L+ V E + + H + +N + + P+ A+GS D T
Sbjct: 193 APDTRLFVSGACDASAKLWDVR--EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 633 IIWSLASPAKHIIIKNAHPQSQITRLQWLDNDLLVSVG-QDCNTKIWE 679
++ L + + + + + IT + + + L+ G D N +W+
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 114/285 (40%), Gaps = 24/285 (8%)
Query: 156 IASGDISGKVRIWD--TVNKEH--------ILKNEFHPIGGPIKDIAWSPDNQRMVVVGE 205
+ S GK+ IWD T NK H ++ + P G + DN + +
Sbjct: 70 LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA--CGGLDN--ICSIYN 125
Query: 206 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK 265
+ R G+V +S E++G + ++ C F +I+T S D T A+++ +
Sbjct: 126 LKTREGNVRVSR------ELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQT 177
Query: 266 MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWK 325
T H+ V ++ +P F S D L+D + H+ + A+ +
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQTFTGHESDINAICFF 235
Query: 326 PDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISY 385
P+G T S D TC+L+D+ + + N + + LL F
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295
Query: 386 LDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 430
+ + V+ GH+ ++ L ++ D V TGS D F+ WN
Sbjct: 296 VWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 100/260 (38%), Gaps = 22/260 (8%)
Query: 88 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNI 147
V Y+PSG Y+A G + I++ +E ++ G G L + +
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT----GYLSCCRFLDDN 155
Query: 148 LVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR 207
+++ +SGD + +WD + H G + ++ +PD R+ V G
Sbjct: 156 QIVT-----SSGDTT--CALWDIETGQQTTTFTGHT--GDVMSLSLAPDT-RLFVSGAC- 204
Query: 208 ERFGHVFMSETGTSVGEISGQSKPINS-CDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM 266
+ ++ G +G IN+ C F F TGS+D T +F+ + M
Sbjct: 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF--ATGSDDATCRLFDLRADQELM 262
Query: 267 TKQEHSRF--VQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW 324
T + + +V +S SG + D ++D AD L H V +
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL--AGHDNRVSCLGV 320
Query: 325 KPDGTQLLTASGDKTCKLWD 344
DG + T S D K+W+
Sbjct: 321 TDDGMAVATGSWDSFLKIWN 340
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Query: 536 VAVGGADSKVHIYELNNKSLSPKAELD---HLGPVTDCSFSPSNEYLVASDAHRKVVLYR 592
VA GG D+ IY L + + + + H G ++ C F N+ +V S L+
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWD 170
Query: 593 VPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSL 637
+ + H+ V ++ +PD+ L SG+ D + +W +
Sbjct: 171 IETGQQTTTFT--GHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 66/328 (20%), Positives = 116/328 (35%), Gaps = 47/328 (14%)
Query: 315 HKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW--QGD 372
H +YA+ W D LL+AS D +WD T + V + + ++C + G+
Sbjct: 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSS---WVMTCAYAPSGN 110
Query: 373 YLLTVSLSGFISYLDVNNPSTPIRV---IKGHNKPITALALSPDRGTVFTGSHDGFITRW 429
Y+ L S ++ +RV + GH ++ D + T S D W
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALW 169
Query: 430 NAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPR 489
+ +TG+ G+ ++ A L+ G D KL
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD--------------ASAKLWDVRE 215
Query: 490 GLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYE 549
G+ T + I NG A G D+ +++
Sbjct: 216 GMCRQTFTGHESDINAICFFPNG---------------------NAFATGSDDATCRLFD 254
Query: 550 LN-NKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHS 608
L ++ L + + + +T SFS S L+A ++ + A H
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA--GVLAGHD 312
Query: 609 AKVNCVAWSPDSALVASGSLDTTIIIWS 636
+V+C+ + D VA+GS D+ + IW+
Sbjct: 313 NRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 55/288 (19%), Positives = 105/288 (36%), Gaps = 42/288 (14%)
Query: 396 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATG 455
R ++GH I A+ D + + S DG + W++ T N+++ +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT-----------NKVHAIPLRS 97
Query: 456 ELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKV 515
+ TC A SG V G GLD ++ + E +V
Sbjct: 98 SWVMTCAY------------APSGNYVACG----GLD------NICSIYNLKTREGNVRV 135
Query: 516 S---SLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSF 572
S + Y LD + + G D+ ++++ + H G V S
Sbjct: 136 SRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIETGQQTTTFTG-HTGDVMSLSL 192
Query: 573 SPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTI 632
+P V+ L+ V E + + H + +N + + P+ A+GS D T
Sbjct: 193 APDTRLFVSGACDASAKLWDVR--EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 633 IIWSLASPAKHIIIKNAHPQSQITRLQWLDNDLLVSVG-QDCNTKIWE 679
++ L + + + + + IT + + + L+ G D N +W+
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 115/304 (37%), Gaps = 56/304 (18%)
Query: 214 FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE--- 270
M+E T G + G + + P P I++ S D TI ++ K+T+ E
Sbjct: 23 MMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMW-------KLTRDETNY 75
Query: 271 ---------HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYA 321
HS FV V S G S +DG + L+D + H V +
Sbjct: 76 GIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF--VGHTKDVLS 133
Query: 322 VAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW-----QGDYLLT 376
VA+ D Q+++ S DKT KLW+ V ++ + ++ + VSC+ +++
Sbjct: 134 VAFSSDNRQIVSGSRDKTIKLWNTLG---VCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 190
Query: 377 VSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGEN 436
+ ++ N I GH + + +SPD +G DG W+ G++
Sbjct: 191 CGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH 249
Query: 437 DRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAY-----SGPEVKLGSQPRGL 491
LYT D I + S N Y +GP +K+ +
Sbjct: 250 ---------------------LYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKI 288
Query: 492 DIDE 495
+DE
Sbjct: 289 IVDE 292
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 94/228 (41%), Gaps = 17/228 (7%)
Query: 218 TGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF-KFKMTKQEHSRFVQ 276
TGT+ G +K + S F S +I++GS D TI ++ K+ + + HS +V
Sbjct: 117 TGTTTRRFVGHTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVS 175
Query: 277 AVRYSPSGSH--FASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTA 334
VR+SP+ S+ S G+D V +++ A+ L + + H G + V PDG+ +
Sbjct: 176 CVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL--KTNHIGHTGYLNTVTVSPDGSLCASG 233
Query: 335 SGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNP--- 391
D LWD+ + G+ + C Y L + I D+
Sbjct: 234 GKDGQAMLWDLNEGKHLYTLDGGDIIN---ALCFSPNRYWLCAATGPSIKIWDLEGKIIV 290
Query: 392 -STPIRVIKGHNKP----ITALALSPDRGTVFTGSHDGFITRWNAKTG 434
VI +K T+LA S D T+F G D + W G
Sbjct: 291 DELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/345 (22%), Positives = 135/345 (39%), Gaps = 64/345 (18%)
Query: 314 AHKGGVYAVAWKPDG-TQLLTASGDKTCKLWDI---ETKSVVSEFIMGNQ---VEDQQVS 366
H G V +A P +L+AS DKT +W + ET + + + V D +S
Sbjct: 36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS 95
Query: 367 CLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFI 426
G + L+ S G + D+ +T R + GH K + ++A S D + +GS D I
Sbjct: 96 S--DGQFALSGSWDGTLRLWDLTTGTTTRRFV-GHTKDVLSVAFSSDNRQIVSGSRDKTI 152
Query: 427 TRWNAKTGENDRVQGAGHGNQINGMK----ATGELLYTCGIDDTIKQVDLSSNAYSGPEV 482
WN VQ H ++ ++ ++ ++ +CG D +K +L++
Sbjct: 153 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-------C 205
Query: 483 KLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGAD 542
KL + G L TVTV + L A GG D
Sbjct: 206 KLKTNHIG---HTGYLNTVTVSP--------------------------DGSLCASGGKD 236
Query: 543 SKVHIYELNN-KSLSPKAELDHLGPVTDCSFSPSNEYLVAS--------DAHRKVVLYRV 593
+ +++LN K L LD + FSP+ +L A+ D K+++ +
Sbjct: 237 GQAMLWDLNEGKHL---YTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDEL 293
Query: 594 PDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLA 638
++ + + + +AWS D + +G D + +W +
Sbjct: 294 KQEVISTSSK--AEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 9/134 (6%)
Query: 67 VIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH 126
V + N+ N + + H+ +N SP G ASG G+ +WD +H+ +
Sbjct: 197 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD-- 254
Query: 127 PIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGG 186
GG DI L + R L + G I D+ GK+ + D + K+ ++
Sbjct: 255 --GG---DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIV-DEL-KQEVISTSSKAEPP 307
Query: 187 PIKDIAWSPDNQRM 200
+AWS D Q +
Sbjct: 308 QCTSLAWSADGQTL 321
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 607 HSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQ--SQITRLQWLDND 664
H+ V VA+S D+ + SGS D TI +W+ K+ + +H + S + N
Sbjct: 127 HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNP 186
Query: 665 LLVSVGQDCNTKIWEIA 681
++VS G D K+W +A
Sbjct: 187 IIVSCGWDKLVKVWNLA 203
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 5/121 (4%)
Query: 526 SISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSP--SNEYLVASD 583
S++ ++ + G D + ++ + H V+ FSP SN +V+
Sbjct: 133 SVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG 192
Query: 584 AHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKH 643
+ V ++ + + +L N H+ +N V SPD +L ASG D ++W L + KH
Sbjct: 193 WDKLVKVWNLANCKLKTNHI--GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL-NEGKH 249
Query: 644 I 644
+
Sbjct: 250 L 250
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 119/293 (40%), Gaps = 37/293 (12%)
Query: 156 IASGDISGKVRIWD--TVNKEH--------ILKNEFHPIGGPIKDIAWSPDNQRMV--VV 203
I S GKV +WD T NKEH ++ + P G I DN+ V +
Sbjct: 79 IVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIA--CGGLDNKCSVYPLT 136
Query: 204 GEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK 263
+ E M+ SV + +++C F S +I+T S D T A+++ +
Sbjct: 137 FDKNEN-----MAAKKKSVAM---HTNYLSACSFTNS-DMQILTASGDGTCALWDVESGQ 187
Query: 264 FKMTKQEHSRFVQAVRYSPS--GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYA 321
+ H V + +PS G+ F S G D K ++D S V H+ V +
Sbjct: 188 LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF--ETHESDVNS 245
Query: 322 VAWKPDGTQLLTASGDKTCKLWDIETKSVVSEF-----IMGNQVEDQQVSCLWQGDYLLT 376
V + P G + S D TC+L+D+ V+ + I G D +S G L
Sbjct: 246 VRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLS----GRLLFA 301
Query: 377 VSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRW 429
I+ DV S + ++ GH ++ L +SPD +GS D + W
Sbjct: 302 GYNDYTINVWDVLKGS-RVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 79/187 (42%), Gaps = 19/187 (10%)
Query: 177 LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCD 236
LK+E + G +++ + + V E E G M T + G + D
Sbjct: 16 LKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRT----LKGHGNKVLCMD 71
Query: 237 FKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS-----RFVQAVRYSPSGSHFASAG 291
+ + RI++ S+D + V++ T +EH+ +V A Y+PSG A G
Sbjct: 72 WCKDKR-RIVSSSQDGKVIVWDSFT-----TNKEHAVTMPCTWVMACAYAPSGCAIACGG 125
Query: 292 FDGKVFLY----DGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET 347
D K +Y D + H + A ++ Q+LTASGD TC LWD+E+
Sbjct: 126 LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVES 185
Query: 348 KSVVSEF 354
++ F
Sbjct: 186 GQLLQSF 192
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 101/273 (36%), Gaps = 22/273 (8%)
Query: 100 IASGDISGKVRIWD--TVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIA 157
I S GKV +WD T NKEH + + T + G IA
Sbjct: 79 IVSSSQDGKVIVWDSFTTNKEHAVT----------------MPCTWVMACAYAPSGCAIA 122
Query: 158 SGDISGKVRIWD-TVNKEHILKNEFHPIGGPIKDI-AWSPDNQRMVVVGEGRERFGHVFM 215
G + K ++ T +K + + + + A S N M ++ + ++
Sbjct: 123 CGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWD 182
Query: 216 SETGTSVGEISGQSKPINSCDFKPSRPFR-IITGSEDNTIAVFEGPPFKFKMTKQEHSRF 274
E+G + G + D PS ++G D V++ + + H
Sbjct: 183 VESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESD 242
Query: 275 VQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTA 334
V +VRY PSG FAS D LYD + V+ + G +V + G L
Sbjct: 243 VNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAG 302
Query: 335 SGDKTCKLWDIETKSVVS-EFIMGNQVEDQQVS 366
D T +WD+ S VS F N+V +VS
Sbjct: 303 YNDYTINVWDVLKGSRVSILFGHENRVSTLRVS 335
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 115/303 (37%), Gaps = 56/303 (18%)
Query: 215 MSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE---- 270
M+E T G + G + + P P I++ S D TI ++ K+T+ E
Sbjct: 1 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMW-------KLTRDETNYG 53
Query: 271 --------HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAV 322
HS FV V S G S +DG + L+D + H V +V
Sbjct: 54 IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF--VGHTKDVLSV 111
Query: 323 AWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW-----QGDYLLTV 377
A+ D Q+++ S DKT KLW+ V ++ + ++ + VSC+ +++
Sbjct: 112 AFSSDNRQIVSGSRDKTIKLWNTLG---VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC 168
Query: 378 SLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGEND 437
+ ++ N I GH + + +SPD +G DG W+ G++
Sbjct: 169 GWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH- 226
Query: 438 RVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAY-----SGPEVKLGSQPRGLD 492
LYT D I + S N Y +GP +K+ +
Sbjct: 227 --------------------LYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKII 266
Query: 493 IDE 495
+DE
Sbjct: 267 VDE 269
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 94/228 (41%), Gaps = 17/228 (7%)
Query: 218 TGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF-KFKMTKQEHSRFVQ 276
TGT+ G +K + S F S +I++GS D TI ++ K+ + + HS +V
Sbjct: 94 TGTTTRRFVGHTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVS 152
Query: 277 AVRYSPSGSH--FASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTA 334
VR+SP+ S+ S G+D V +++ A+ L + + H G + V PDG+ +
Sbjct: 153 CVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL--KTNHIGHTGYLNTVTVSPDGSLCASG 210
Query: 335 SGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNP--- 391
D LWD+ + G+ + C Y L + I D+
Sbjct: 211 GKDGQAMLWDLNEGKHLYTLDGGDIIN---ALCFSPNRYWLCAATGPSIKIWDLEGKIIV 267
Query: 392 -STPIRVIKGHNKP----ITALALSPDRGTVFTGSHDGFITRWNAKTG 434
VI +K T+LA S D T+F G D + W G
Sbjct: 268 DELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 315
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/345 (22%), Positives = 135/345 (39%), Gaps = 64/345 (18%)
Query: 314 AHKGGVYAVAWKPD-GTQLLTASGDKTCKLWDI---ETKSVVSEFIMGNQ---VEDQQVS 366
H G V +A P +L+AS DKT +W + ET + + + V D +S
Sbjct: 13 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS 72
Query: 367 CLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFI 426
G + L+ S G + D+ +T R + GH K + ++A S D + +GS D I
Sbjct: 73 S--DGQFALSGSWDGTLRLWDLTTGTTTRRFV-GHTKDVLSVAFSSDNRQIVSGSRDKTI 129
Query: 427 TRWNAKTGENDRVQGAGHGNQINGMK----ATGELLYTCGIDDTIKQVDLSSNAYSGPEV 482
WN VQ H ++ ++ ++ ++ +CG D +K +L++
Sbjct: 130 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-------C 182
Query: 483 KLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGAD 542
KL + G L TVTV + L A GG D
Sbjct: 183 KLKTNHIG---HTGYLNTVTVSP--------------------------DGSLCASGGKD 213
Query: 543 SKVHIYELNN-KSLSPKAELDHLGPVTDCSFSPSNEYLVAS--------DAHRKVVLYRV 593
+ +++LN K L LD + FSP+ +L A+ D K+++ +
Sbjct: 214 GQAMLWDLNEGKHL---YTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDEL 270
Query: 594 PDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLA 638
++ + + + +AWS D + +G D + +W +
Sbjct: 271 KQEVISTSSK--AEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 313
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 9/134 (6%)
Query: 67 VIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH 126
V + N+ N + + H+ +N SP G ASG G+ +WD +H+ +
Sbjct: 174 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD-- 231
Query: 127 PIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGG 186
GG DI L + R L + G I D+ GK+ + D + K+ ++
Sbjct: 232 --GG---DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIV-DEL-KQEVISTSSKAEPP 284
Query: 187 PIKDIAWSPDNQRM 200
+AWS D Q +
Sbjct: 285 QCTSLAWSADGQTL 298
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 607 HSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQ--SQITRLQWLDND 664
H+ V VA+S D+ + SGS D TI +W+ K+ + +H + S + N
Sbjct: 104 HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNP 163
Query: 665 LLVSVGQDCNTKIWEIA 681
++VS G D K+W +A
Sbjct: 164 IIVSCGWDKLVKVWNLA 180
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 5/121 (4%)
Query: 526 SISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSP--SNEYLVASD 583
S++ ++ + G D + ++ + H V+ FSP SN +V+
Sbjct: 110 SVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG 169
Query: 584 AHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKH 643
+ V ++ + + +L N H+ +N V SPD +L ASG D ++W L + KH
Sbjct: 170 WDKLVKVWNLANCKLKTNHI--GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL-NEGKH 226
Query: 644 I 644
+
Sbjct: 227 L 227
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 82/210 (39%), Gaps = 8/210 (3%)
Query: 229 SKPINSCDFKPSRPFRIITGSE--DNTIAVF--EGPPFKFKMTKQE-HSRFVQAVRYSPS 283
+ P + C F P + S D I ++ EG + K E H R V+ V +SP
Sbjct: 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC 72
Query: 284 GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLW 343
G++ ASA FD ++ D H+ V +VAW P G L T S DK+ +W
Sbjct: 73 GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW 132
Query: 344 DIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLS---GFISYLDVNNPSTPIRVIKG 400
+++ + + N +W L S S Y + + ++G
Sbjct: 133 EVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEG 192
Query: 401 HNKPITALALSPDRGTVFTGSHDGFITRWN 430
H + +LA P + + S D + W
Sbjct: 193 HESTVWSLAFDPSGQRLASCSDDRTVRIWR 222
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/298 (20%), Positives = 106/298 (35%), Gaps = 75/298 (25%)
Query: 93 YSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSI 152
++P+G +AS ++RIW T I K+ + + ++R +
Sbjct: 24 WNPAGTLLASCGGDRRIRIWGTEGDSWICKS-----------VLSEGHQRTVRKVAWSPC 72
Query: 153 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGH 212
G Y+AS IW + +K +AW+P +
Sbjct: 73 GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLA----------- 121
Query: 213 VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF---EGPPFKFKMTKQ 269
T S D ++ V+ E ++
Sbjct: 122 ----------------------------------TCSRDKSVWVWEVDEEDEYECVSVLN 147
Query: 270 EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGT 329
H++ V+ V + PS ASA +D V LY D V H+ V+++A+ P G
Sbjct: 148 SHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ 207
Query: 330 QLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQG---DYLLTVSLSGFIS 384
+L + S D+T ++W +++ GN+ Q V+C G + +LSGF S
Sbjct: 208 RLASCSDDRTVRIW--------RQYLPGNE---QGVAC--SGSDPSWKCICTLSGFHS 252
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 78/356 (21%), Positives = 135/356 (37%), Gaps = 59/356 (16%)
Query: 313 PAH-KGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIM--GNQVEDQQVSCLW 369
PAH + +AW P GT L + GD+ ++W E S + + ++ G+Q ++V+
Sbjct: 12 PAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP 71
Query: 370 QGDYLLTVSLSGFISYLDVNNPS-TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITR 428
G+YL + S N + ++GH + ++A +P + T S D +
Sbjct: 72 CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWV 131
Query: 429 WNAKTGENDRVQGA----GHGNQINGM--KATGELLYTCGIDDTIKQVDLSSNAYSGPEV 482
W + E D + H + + + ELL + DDT+K + +
Sbjct: 132 W--EVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCAT 189
Query: 483 KLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPID--------YEPSSISLDHEHG 534
G + TV ++ +G +++S D Y P +E G
Sbjct: 190 LEGHES-------------TVWSLAFDPSGQRLASCSDDRTVRIWRQYLPG-----NEQG 231
Query: 535 LVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY--- 591
+ G S I L+ H + D ++ L + + ++
Sbjct: 232 VACSGSDPSWKCICTLSGF---------HSRTIYDIAWCQLTGALATACGDDAIRVFQED 282
Query: 592 -----RVPDFEL-AHNKEWGFHSAKVNCVAWSP-DSALVASGSLDTTIIIWSLASP 640
+ P F L AH + HS VNCVAW+P + L+AS S D + W P
Sbjct: 283 PNSDPQQPTFSLTAHLHQ--AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 607 HSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWL-DNDL 665
H V VAWSP +AS S D T IW + ++++ + W +L
Sbjct: 60 HQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNL 119
Query: 666 LVSVGQDCNTKIWEI 680
L + +D + +WE+
Sbjct: 120 LATCSRDKSVWVWEV 134
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 96/249 (38%), Gaps = 49/249 (19%)
Query: 198 QRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF 257
+ ++VG R VF TG V + I S P++P+ +++GS+D T+ ++
Sbjct: 67 KNWIIVGSDDFRI-RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLW 124
Query: 258 EGPP-FKFKMTKQEHSRFVQAVRYSPSG-SHFASAGFDGKVFLYDGASADLVSELGNPAH 315
+ + T + H FV V ++P S FAS D V ++ + L
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 316 KGGVYAVAWK-PDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYL 374
+G Y + PD ++TAS D T K+WD +TKS V+
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA---------------------- 222
Query: 375 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTG 434
++GH ++ P + +GS DG + WN+ T
Sbjct: 223 ----------------------TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 435 ENDRVQGAG 443
+ ++ G
Sbjct: 261 KVEKTLNVG 269
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 9/149 (6%)
Query: 536 VAVGGADSKVHIYELNN--KSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 593
+ VG D ++ ++ N K + +A D++ + + P+ Y+++ V L+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI---AVHPTKPYVLSGSDDLTVKLWNW 126
Query: 594 PDFELAHNKEWGFHSAKVNCVAWSP-DSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQ 652
+ A + + H V CVA++P D + ASG LD T+ +WSL + + +
Sbjct: 127 EN-NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 653 --SQITRLQWLDNDLLVSVGQDCNTKIWE 679
+ + D +++ D KIW+
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWD 214
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 96/249 (38%), Gaps = 49/249 (19%)
Query: 198 QRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF 257
+ ++VG R VF TG V + I S P++P+ +++GS+D T+ ++
Sbjct: 67 KNWIIVGSDDFRI-RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLW 124
Query: 258 EGPP-FKFKMTKQEHSRFVQAVRYSPSG-SHFASAGFDGKVFLYDGASADLVSELGNPAH 315
+ + T + H FV V ++P S FAS D V ++ + L
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 316 KGGVYAVAWK-PDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYL 374
+G Y + PD ++TAS D T K+WD +TKS V+
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA---------------------- 222
Query: 375 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTG 434
++GH ++ P + +GS DG + WN+ T
Sbjct: 223 ----------------------TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 435 ENDRVQGAG 443
+ ++ G
Sbjct: 261 KVEKTLNVG 269
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 9/149 (6%)
Query: 536 VAVGGADSKVHIYELNN--KSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 593
+ VG D ++ ++ N K + +A D++ + + P+ Y+++ V L+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI---AVHPTKPYVLSGSDDLTVKLWNW 126
Query: 594 PDFELAHNKEWGFHSAKVNCVAWSP-DSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQ 652
+ A + + H V CVA++P D + ASG LD T+ +WSL + + +
Sbjct: 127 EN-NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 653 --SQITRLQWLDNDLLVSVGQDCNTKIWE 679
+ + D +++ D KIW+
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWD 214
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 96/249 (38%), Gaps = 49/249 (19%)
Query: 198 QRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF 257
+ ++VG R VF TG V + I S P++P+ +++GS+D T+ ++
Sbjct: 67 KNWIIVGSDDFRI-RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLW 124
Query: 258 EGPP-FKFKMTKQEHSRFVQAVRYSPSG-SHFASAGFDGKVFLYDGASADLVSELGNPAH 315
+ + T + H FV V ++P S FAS D V ++ + L
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 316 KGGVYAVAWK-PDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYL 374
+G Y + PD ++TAS D T K+WD +TKS V+
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA---------------------- 222
Query: 375 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTG 434
++GH ++ P + +GS DG + WN+ T
Sbjct: 223 ----------------------TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 435 ENDRVQGAG 443
+ ++ G
Sbjct: 261 KVEKTLNVG 269
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 9/149 (6%)
Query: 536 VAVGGADSKVHIYELNN--KSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 593
+ VG D ++ ++ N K + +A D++ + + P+ Y+++ V L+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI---AVHPTKPYVLSGSDDLTVKLWNW 126
Query: 594 PDFELAHNKEWGFHSAKVNCVAWSP-DSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQ 652
+ A + + H V CVA++P D + ASG LD T+ +WSL + + +
Sbjct: 127 EN-NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 653 --SQITRLQWLDNDLLVSVGQDCNTKIWE 679
+ + D +++ D KIW+
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWD 214
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 109/285 (38%), Gaps = 52/285 (18%)
Query: 162 SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTS 221
SG+V IW+ + + P++ + + ++VG R VF TG
Sbjct: 34 SGRVEIWNYETQVEV--RSIQVTETPVRAGKFIA-RKNWIIVGSDDFRI-RVFNYNTGEK 89
Query: 222 VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP-FKFKMTKQEHSRFVQAVRY 280
V + I S P++P+ +++GS+D T+ ++ + + T + H FV V +
Sbjct: 90 VVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148
Query: 281 SPSG-SHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWK-PDGTQLLTASGDK 338
+P S FAS D V ++ + L +G Y + PD ++TAS D
Sbjct: 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL 208
Query: 339 TCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVI 398
T K+WD +TKS V+ +
Sbjct: 209 TIKIWDYQTKSCVA--------------------------------------------TL 224
Query: 399 KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAG 443
+GH ++ P + +GS DG + WN+ T + ++ G
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 9/149 (6%)
Query: 536 VAVGGADSKVHIYELN--NKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 593
+ VG D ++ ++ N K + +A D++ + + P+ Y+++ V L+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI---AVHPTKPYVLSGSDDLTVKLWNW 126
Query: 594 PDFELAHNKEWGFHSAKVNCVAWSP-DSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQ 652
+ A + + H V CVA++P D + ASG LD T+ +WSL + + +
Sbjct: 127 EN-NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 653 --SQITRLQWLDNDLLVSVGQDCNTKIWE 679
+ + D +++ D KIW+
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWD 214
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 19/174 (10%)
Query: 274 FVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLT 333
++++V +SP G A+ D + ++D + +V L H+ +Y++ + P G +L++
Sbjct: 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL--QGHEQDIYSLDYFPSGDKLVS 182
Query: 334 ASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSL----------SGF- 382
SGD+T ++WD+ T + + V VS G Y+ SL +GF
Sbjct: 183 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS-PGDGKYIAAGSLDRAVRVWDSETGFL 241
Query: 383 ISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGEN 436
+ LD N S GH + ++ + D +V +GS D + WN + N
Sbjct: 242 VERLDSENESG-----TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 290
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 79/378 (20%), Positives = 157/378 (41%), Gaps = 79/378 (20%)
Query: 83 EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI--LKNEFHPIGGPIKDIGTLLS 140
+H+ V K+S G Y+A+G + +++ + + L ++ P +++ T S
Sbjct: 62 DHTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDP-ENLNTSSS 119
Query: 141 LTS---IRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDN 197
+S IR++ G ++A+G +RIWD +N
Sbjct: 120 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI-------------------------EN 154
Query: 198 QRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF 257
+++V++ +G E + I S D+ PS ++++GS D T+ ++
Sbjct: 155 RKIVMILQGHE---------------------QDIYSLDYFPSGD-KLVSGSGDRTVRIW 192
Query: 258 EGPPFKFKMTKQEHSRFVQAVRYSP-SGSHFASAGFDGKVFLYDGASADLVSELGNP--- 313
+ + +T V V SP G + A+ D V ++D + LV L +
Sbjct: 193 DLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 251
Query: 314 --AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQG 371
HK VY+V + DG +++ S D++ KLW+++ + S+ N +V+ +
Sbjct: 252 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS-GTCEVTYIGHK 310
Query: 372 DYLLTVSLSGFISYLDVNNPS-----------TPIRVIKGHNKPITALA------LSPDR 414
D++L+V+ + Y+ + P+ +++GH + ++A L P+
Sbjct: 311 DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 370
Query: 415 GTVFTGSHDGFITRWNAK 432
TGS D W K
Sbjct: 371 NVFATGSGDCKARIWKYK 388
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 101/235 (42%), Gaps = 23/235 (9%)
Query: 232 INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG 291
I S F P F + TG+ED I +++ K M Q H + + ++ Y PSG S
Sbjct: 126 IRSVCFSPDGKF-LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 184
Query: 292 FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKP-DGTQLLTASGDKTCKLWDIETKSV 350
D V ++D + L + + GV VA P DG + S D+ ++WD ET +
Sbjct: 185 GDRTVRIWDLRTGQCSLTL---SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 241
Query: 351 V----SEFIMGNQVEDQQVSCLW--QGDYLLTVSLSGFISYLDVNNPS-----------T 393
V SE G +D S ++ G +++ SL + ++ N + T
Sbjct: 242 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 301
Query: 394 PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQI 448
GH + ++A + + + +GS D + W+ K+G N + GH N +
Sbjct: 302 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQGHRNSV 355
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 115/303 (37%), Gaps = 62/303 (20%)
Query: 71 NIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGG 130
N + SD+Y C +SP G ++A+G +RIWD N++ ++ + H
Sbjct: 115 NTSSSPSSDLYIRSVC------FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE--- 165
Query: 131 PIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKD 190
+DI +L S G + SG VRIWD + L I +
Sbjct: 166 --QDIYSLDYFPS---------GDKLVSGSGDRTVRIWDLRTGQCSLT---LSIEDGVTT 211
Query: 191 IAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEI-------SGQSKPINSCDFKPSRPF 243
+A SP + + + G +R V+ SETG V + +G + S F
Sbjct: 212 VAVSPGDGKYIAAGS-LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ- 269
Query: 244 RIITGSEDNTIAVFEGPPFKFK------------MTKQEHSRFVQAVRYSPSGSHFASAG 291
+++GS D ++ ++ K +T H FV +V + + + S
Sbjct: 270 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS 329
Query: 292 FDGKVFLYDGASADLVSELGNP-----AHKGGVYAVA------WKPDGTQLLTASGDKTC 340
D V +D S GNP H+ V +VA P+ T SGD
Sbjct: 330 KDRGVLFWDKKS-------GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKA 382
Query: 341 KLW 343
++W
Sbjct: 383 RIW 385
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 18/136 (13%)
Query: 561 LDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFEL--------AHNKE-WGFHSAK- 610
LDH V FS EYL A+ ++ +YRV D L A NK+ +++
Sbjct: 61 LDHTSVVCCVKFSNDGEYL-ATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSS 119
Query: 611 ------VNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWLDND 664
+ V +SPD +A+G+ D I IW + + K ++I H Q + + D
Sbjct: 120 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFPSGD 178
Query: 665 LLVSVGQDCNTKIWEI 680
LVS D +IW++
Sbjct: 179 KLVSGSGDRTVRIWDL 194
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 53/119 (44%), Gaps = 17/119 (14%)
Query: 54 PKGKNFLYTNGNSVIIR--NIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRI 111
P GK FL T +IR +IEN I I H + Y PSG + SG VRI
Sbjct: 133 PDGK-FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 191
Query: 112 WDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDT 170
WD L+ + I+D T ++++ G YIA+G + VR+WD+
Sbjct: 192 WD-------LRTGQCSLTLSIEDGVTTVAVSP-------GDGKYIAAGSLDRAVRVWDS 236
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 21/143 (14%)
Query: 504 KQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDH 563
++I ++ G + +DY PS L G D V I++L S ++
Sbjct: 155 RKIVMILQGHEQDIYSLDYFPSGDKL-------VSGSGDRTVRIWDLRTGQCSLTLSIED 207
Query: 564 LGPVTDCSFSPSN-EYLVASDAHRKVVLYRVPDFEL--------AHNKEWGFHSAKVNCV 614
VT + SP + +Y+ A R V RV D E + N+ H V V
Sbjct: 208 --GVTTVAVSPGDGKYIAAGSLDRAV---RVWDSETGFLVERLDSENESGTGHKDSVYSV 262
Query: 615 AWSPDSALVASGSLDTTIIIWSL 637
++ D V SGSLD ++ +W+L
Sbjct: 263 VFTRDGQSVVSGSLDRSVKLWNL 285
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 82/366 (22%), Positives = 148/366 (40%), Gaps = 47/366 (12%)
Query: 120 ILKNEFHPIGGPIKDIGTLLS--LTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHIL 177
ILKN ++P P + T L +TS+ L + I D +R++D++NK+ +L
Sbjct: 101 ILKNWYNPKFVPQR---TTLRGHMTSVITCLQFEDNYVITGAD-DKMIRVYDSINKKFLL 156
Query: 178 KNEFHPIGGPIKDIAWSPDNQRM-VVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCD 236
+ H G W+ ++V +R V+ + G G + + D
Sbjct: 157 QLSGHDGG------VWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 210
Query: 237 FKPSRPFR-IITGSEDNTIAVFEGP--------------PFKFKMTKQEHSRFVQAVR-- 279
+ + I+TGS DNT+ V++ P P F T +E+ FV +R
Sbjct: 211 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH-TPEENPYFVGVLRGH 269
Query: 280 ------YSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLT 333
S G+ S +D + ++D A + L H +Y+ + + + ++
Sbjct: 270 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL--SGHTDRIYSTIYDHERKRCIS 327
Query: 334 ASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGD-YLLTVSLSGFISYLDVNNPS 392
AS D T ++WD+E E + Q V L D +L++ + G I D N+ S
Sbjct: 328 ASMDTTIRIWDLEN----GELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS 383
Query: 393 TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMK 452
+ IT +S + + +GS + F +N ++G+ +QI +
Sbjct: 384 RKFSYHHTNLSAITTFYVSDN--ILVSGSENQF-NIYNLRSGKLVHANILKDADQIWSVN 440
Query: 453 ATGELL 458
G+ L
Sbjct: 441 FKGKTL 446
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 607 HSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWLDNDLL 666
H A V V S +V SGS D T+I+W +A K + I + H + + +
Sbjct: 269 HMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQ-MKCLYILSGHTDRIYSTIYDHERKRC 325
Query: 667 VSVGQDCNTKIWEI 680
+S D +IW++
Sbjct: 326 ISASMDTTIRIWDL 339
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 8/137 (5%)
Query: 225 ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP------PFKFK-MTKQEHSRFVQA 277
+ G + P+ + P I +GSED T+ V+E P P + +T + H++ V
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 278 VRYSPSGSH-FASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASG 336
V + P+ + SAG D + ++D + V LG H +Y+V W DG + T+
Sbjct: 137 VAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196
Query: 337 DKTCKLWDIETKSVVSE 353
DK ++ + +VV+E
Sbjct: 197 DKRVRVIEPRKGTVVAE 213
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 10/126 (7%)
Query: 563 HLGPVTDCSFSPSNEYLVASDAHR-KVVLYRVPDFELAHNKEWGF-----HSAKVNCVAW 616
H PV D ++ P N+ ++AS + V+++ +PD L H+ +V VAW
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 617 SPDSA-LVASGSLDTTIIIWSLASPAKHIII-KNAHPQSQITRLQW-LDNDLLVSVGQDC 673
P + ++ S D I++W + + A + + + HP + I + W D L+ + +D
Sbjct: 140 HPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDT-IYSVDWSRDGALICTSCRDK 198
Query: 674 NTKIWE 679
++ E
Sbjct: 199 RVRVIE 204
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 607 HSAKVNCVAWSP-DSALVASGSLDTTIIIWS-----LASPAKHIIIKNAHPQSQITRLQW 660
H+A V +AW P + ++ASGS D T+++W L P + +I ++ + W
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 661 --LDNDLLVSVGQDCNTKIWEI 680
++L+S G D +W++
Sbjct: 140 HPTAQNVLLSAGXDNVILVWDV 161
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 11/173 (6%)
Query: 192 AWSPDNQRMVVVGEGRERFGHVFMSETG---TSVGEISGQSKPINSCDFKPSRPFRIITG 248
A +P ++ G F + + +TG +V + G + P+ + P I +G
Sbjct: 41 AVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASG 100
Query: 249 SEDNTIAVFEGP------PFKFK-MTKQEHSRFVQAVRYSPSGSH-FASAGFDGKVFLYD 300
SED T+ V+E P P + +T + H++ V V + P+ + SAG D + ++D
Sbjct: 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD 160
Query: 301 GASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSE 353
+ V LG H +Y+V W DG + T+ DK ++ + +VV+E
Sbjct: 161 VGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAE 213
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 10/126 (7%)
Query: 563 HLGPVTDCSFSPSNEYLVASDAHR-KVVLYRVPDFELAHNKEWGF-----HSAKVNCVAW 616
H PV D ++ P N+ ++AS + V+++ +PD L H+ +V VAW
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 617 SPDSA-LVASGSLDTTIIIWSLASPAKHIII-KNAHPQSQITRLQW-LDNDLLVSVGQDC 673
P + ++ S D I++W + + A + + + HP + I + W D L+ + +D
Sbjct: 140 HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT-IYSVDWSRDGALICTSCRDK 198
Query: 674 NTKIWE 679
++ E
Sbjct: 199 RVRVIE 204
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 607 HSAKVNCVAWSP-DSALVASGSLDTTIIIWS-----LASPAKHIIIKNAHPQSQITRLQW 660
H+A V +AW P + ++ASGS D T+++W L P + +I ++ + W
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 661 --LDNDLLVSVGQDCNTKIWEI 680
++L+S G D +W++
Sbjct: 140 HPTAQNVLLSAGCDNVILVWDV 161
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/366 (22%), Positives = 146/366 (39%), Gaps = 47/366 (12%)
Query: 120 ILKNEFHPIGGPIKDIGTLLS--LTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHIL 177
ILKN ++P P + T L TS+ L + I D +R++D++NK+ +L
Sbjct: 101 ILKNWYNPKFVPQR---TTLRGHXTSVITCLQFEDNYVITGAD-DKXIRVYDSINKKFLL 156
Query: 178 KNEFHPIGGPIKDIAWSPDNQRM-VVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCD 236
+ H G W+ ++V +R V+ + G G + + D
Sbjct: 157 QLSGHDGG------VWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 210
Query: 237 FKPSRPFR-IITGSEDNTIAVFEGP--------------PFKFKMTKQEHSRFVQAVR-- 279
+ + I+TGS DNT+ V++ P P F T +E+ FV +R
Sbjct: 211 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH-TPEENPYFVGVLRGH 269
Query: 280 ------YSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLT 333
S G+ S +D + ++D A + L H +Y+ + + + ++
Sbjct: 270 XASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYIL--SGHTDRIYSTIYDHERKRCIS 327
Query: 334 ASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGD-YLLTVSLSGFISYLDVNNPS 392
AS D T ++WD+E E Q V L D +L++ + G I D N+ S
Sbjct: 328 ASXDTTIRIWDLEN----GELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS 383
Query: 393 TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMK 452
+ IT +S + + +GS + F +N ++G+ +QI +
Sbjct: 384 RKFSYHHTNLSAITTFYVSDN--ILVSGSENQF-NIYNLRSGKLVHANILKDADQIWSVN 440
Query: 453 ATGELL 458
G+ L
Sbjct: 441 FKGKTL 446
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 607 HSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWLDNDLL 666
H A V V S +V SGS D T+I+W +A K + I + H + + +
Sbjct: 269 HXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQ-XKCLYILSGHTDRIYSTIYDHERKRC 325
Query: 667 VSVGQDCNTKIWEI 680
+S D +IW++
Sbjct: 326 ISASXDTTIRIWDL 339
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 110/237 (46%), Gaps = 18/237 (7%)
Query: 144 IRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV 203
+ ++ + + G + S +R+W+ N + K H + +A+SPDN++ +V
Sbjct: 70 VSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHT--KDVLSVAFSPDNRQ--IV 125
Query: 204 GEGRERFGHVFMSETGTSVGEIS--GQSKPINSCDFKPS--RPFRIITGSEDNTIAVFEG 259
GR+ V+ + G + +S + ++ F PS P I++G DN + V++
Sbjct: 126 SGGRDNALRVW-NVKGECMHTLSRGAHTDWVSCVRFSPSLDAPV-IVSGGWDNLVKVWDL 183
Query: 260 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGV 319
+ + H+ +V +V SP GS AS+ DG L+D + +SE+ A +
Sbjct: 184 ATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEM---AAGAPI 240
Query: 320 YAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQ----VEDQQVSCLWQGD 372
+ + P+ + A+ +K +++D+E K ++ E +Q + + VS W D
Sbjct: 241 NQICFSPN-RYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSAD 296
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 100/237 (42%), Gaps = 22/237 (9%)
Query: 223 GEISGQSKPINS--CDFKPSRPFRIITGSEDNTIAVFEGPPFKFK---------MTKQEH 271
G+++G + S C P ++++ S D T+ + P + + H
Sbjct: 7 GQLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGH 66
Query: 272 SRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQL 331
S FV V S +G+ SA +D + L++ + + H V +VA+ PD Q+
Sbjct: 67 SAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKF--LGHTKDVLSVAFSPDNRQI 124
Query: 332 LTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQG---DYLLTVSLSGFISYLDV 388
++ D ++W+++ + + + VSC+ D + VS G+ + + V
Sbjct: 125 VSGGRDNALRVWNVKGECM---HTLSRGAHTDWVSCVRFSPSLDAPVIVS-GGWDNLVKV 180
Query: 389 NNPSTPIRV--IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAG 443
+ +T V +KGH +T++ +SPD + DG W+ GE AG
Sbjct: 181 WDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAG 237
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 72/349 (20%), Positives = 138/349 (39%), Gaps = 64/349 (18%)
Query: 315 HKGGVYAVAW--KPD-GTQLLTASGDKTCKLWDIETKSVVSEF--------IMGNQVEDQ 363
H+G V ++A P+ T++++ S DKT W SE + G+
Sbjct: 12 HRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVS 71
Query: 364 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHD 423
V+ G++ ++ S + ++ N + + GH K + ++A SPD + +G D
Sbjct: 72 DVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFL-GHTKDVLSVAFSPDNRQIVSGGRD 130
Query: 424 GFITRWNAKTGENDRVQGAGHGNQINGMKATGEL----LYTCGIDDTIKQVDLSSNAYSG 479
+ WN K + H + ++ ++ + L + + G D+ +K DL++
Sbjct: 131 NALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATG---- 186
Query: 480 PEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVG 539
+L + +G N + +VTV + L A
Sbjct: 187 ---RLVTDLKG---HTNYVTSVTVSP--------------------------DGSLCASS 214
Query: 540 GADSKVHIYELNN-KSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD--- 595
D +++L ++LS E+ P+ FSP N Y + + + + ++ + +
Sbjct: 215 DKDGVARLWDLTKGEALS---EMAAGAPINQICFSP-NRYWMCAATEKGIRIFDLENKDI 270
Query: 596 -FELAHNKEWGFHSAKVNCV--AWSPDSALVASGSLDTTIIIWSLASPA 641
ELA + G CV AWS D + + SG D I +W ++ A
Sbjct: 271 IVELAPEHQ-GSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVSENA 318
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Query: 563 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSAL 622
H V+D + S + + V++ + L+ + + + + ++ H+ V VA+SPD+
Sbjct: 66 HSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQY--KFLGHTKDVLSVAFSPDNRQ 123
Query: 623 VASGSLDTTIIIWSLASPAKHIIIKNAHPQ--SQITRLQWLDNDLLVSVGQDCNTKIWEI 680
+ SG D + +W++ H + + AH S + LD ++VS G D K+W++
Sbjct: 124 IVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDL 183
Query: 681 A 681
A
Sbjct: 184 A 184
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 64/172 (37%), Gaps = 34/172 (19%)
Query: 65 NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK-EHILKN 123
+S+ + N++N + H+ V +SP I SG +R+W+ + H L
Sbjct: 89 HSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSR 148
Query: 124 EFH---------------PI---GG-----PIKDIGTLLSLTSIR-------NILVLSIG 153
H P+ GG + D+ T +T ++ ++ V G
Sbjct: 149 GAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDG 208
Query: 154 FYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGE 205
AS D G R+WD E + + G PI I +SP+ M E
Sbjct: 209 SLCASSDKDGVARLWDLTKGEALSE---MAAGAPINQICFSPNRYWMCAATE 257
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 43/124 (34%), Gaps = 25/124 (20%)
Query: 84 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTS 143
H+ V SP G AS D G R+WD E + + G PI
Sbjct: 195 HTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSE---MAAGAPI----------- 240
Query: 144 IRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHP-------IGGPIKDIAWSPD 196
N + S Y +RI+D NK+ I+ E P I IAWS D
Sbjct: 241 --NQICFSPNRYWMCAATEKGIRIFDLENKDIIV--ELAPEHQGSKKIVPECVSIAWSAD 296
Query: 197 NQRM 200
+
Sbjct: 297 GSTL 300
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 92/217 (42%), Gaps = 12/217 (5%)
Query: 223 GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE--GPPFKFKM---TKQEHSRFVQA 277
G + G + + S +P +++ S D T+ ++ G KF + + + HS VQ
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 278 VRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD 337
+ G++ SA +D + L+D A+ + HK V +V + +++ S D
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRF--VGHKSDVMSVDIDKKASMIISGSRD 128
Query: 338 KTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGD----YLLTVSLSGFISYLDVNNPST 393
KT K+W I+ + + + + V +V + D +++ + ++N
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 394 PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 430
I GHN I L SPD + + DG I WN
Sbjct: 189 EADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 16/159 (10%)
Query: 326 PDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISY 385
DG L+AS DKT +LWD+ T F+ G++ + V + +++ S I
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 386 LDVNNPSTPIRVIKGHNKPITALALSP------DRGTVFTGSHDGFITRWNAKTG--END 437
+ + + GHN ++ + + P D T+ + +D + WN E D
Sbjct: 134 WTIKGQC--LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 438 RVQGAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLSS 474
+ GH + IN + A+ G L+ + G D I +L++
Sbjct: 192 FI---GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 87/206 (42%), Gaps = 15/206 (7%)
Query: 144 IRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV 203
+++ + + G Y S +R+WD E + H DI D + +++
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI----DKKASMII 123
Query: 204 GEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRP-----FRIITGSEDNTIAVFE 258
R++ V+ + G + + G + ++ P+ II+ D + +
Sbjct: 124 SGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Query: 259 GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGG 318
F+ + H+ + + SP G+ ASAG DG++ L++ A+ + L + +
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL---SAQDE 239
Query: 319 VYAVAWKPDGTQL--LTASGDKTCKL 342
V+++A+ P+ L TA+G K L
Sbjct: 240 VFSLAFSPNRYWLAAATATGIKVFSL 265
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 53/265 (20%), Positives = 108/265 (40%), Gaps = 31/265 (11%)
Query: 394 PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQING--M 451
P+R KGH+ + L+ D + S D + W+ TGE + + GH + + +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ-RFVGHKSDVMSVDI 115
Query: 452 KATGELLYTCGIDDTIKQVDLSSNAYSG--------PEVKLGSQPRGLDIDENTLVTV-- 501
++ + D TIK + + +V++ + D D T+++
Sbjct: 116 DKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA-DDDSVTIISAGN 174
Query: 502 --TVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNK----SL 555
VK ++ + + + + ++++ + L+A G D ++ ++ L K +L
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
Query: 556 SPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNK-EWGFHSAKVN-- 612
S + E V +FSP+ +L A+ A V P + + + E+ +S
Sbjct: 235 SAQDE------VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPH 288
Query: 613 --CVAWSPDSALVASGSLDTTIIIW 635
+AWS D + +G D I +W
Sbjct: 289 AVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 54/299 (18%), Positives = 118/299 (39%), Gaps = 58/299 (19%)
Query: 398 IKGHNKPITALALSPDR-GTVFTGSHDGFITRWNAKTGENDRV-------QGAGHGNQIN 449
++GHN +T+LA S + + + S D + W TG++ + +G H Q
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL-TGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 450 GMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIV 509
+ A G + D T++ D+++ V S +DID K+ S++
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID---------KKASMI 122
Query: 510 ENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTD 569
+G++ D + ++ + + L+ L H V+
Sbjct: 123 ISGSR---------------------------DKTIKVWTIKGQCLATL--LGHNDWVSQ 153
Query: 570 CSFSPSNEY------LVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALV 623
P+ + ++++ + V + + F++ ++ H++ +N + SPD L+
Sbjct: 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLI 211
Query: 624 ASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWLDNDLLVSVGQDCNTKIWEIAP 682
AS D I++W+LA+ + Q ++ L + N ++ K++ + P
Sbjct: 212 ASAGKDGEIMLWNLAAKKAMYTLS---AQDEVFSLAFSPNRYWLAAATATGIKVFSLDP 267
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 563 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSAL 622
H V DC+ + Y +++ + + L+ V E + + G H + V V +++
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE-TYQRFVG-HKSDVMSVDIDKKASM 121
Query: 623 VASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRL--QWLDND--LLVSVGQDCNTKIW 678
+ SGS D TI +W++ ++ + SQ+ + + D+D ++S G D K W
Sbjct: 122 IISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 679 EIAPF 683
+ F
Sbjct: 182 NLNQF 186
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 74/178 (41%), Gaps = 14/178 (7%)
Query: 267 TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKP 326
T Q HS V + + G AS G D V ++D S+ + + H V AVAW P
Sbjct: 212 TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS--IPKFTKTNHNAAVKAVAWCP 269
Query: 327 DGTQLLTASG---DKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGF- 382
+ LL G DK W+ T + V+ G+QV S +W +S GF
Sbjct: 270 WQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQV----TSLIWSPHSKEIMSTHGFP 325
Query: 383 ---ISYLDVNNPSTPIRV-IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGEN 436
+S ++ +V I H+ + ALSPD + T + D + W G++
Sbjct: 326 DNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDH 383
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 71/317 (22%), Positives = 130/317 (41%), Gaps = 54/317 (17%)
Query: 289 SAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK 348
+ + V++++ S VS L V +V W DG+ L G+ ++D+E++
Sbjct: 108 AVALERNVYVWNADSGS-VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ 166
Query: 349 SVVSEFIMGNQVEDQQVSCL-WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITA 407
+ + + G+Q +V CL W L + S SG I + DV + I ++GH+ +
Sbjct: 167 TKL-RTMAGHQA---RVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCG 222
Query: 408 LALSPDRGTVFTGSHDGFITRWNA--------KTGENDRVQGAGHGNQINGMKATGELLY 459
LA D + +G +D + W+A KT N V+ + + ATG
Sbjct: 223 LAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATG---- 278
Query: 460 TCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLP 519
G D KQ+ NA +G +++ V+ G++V+SL
Sbjct: 279 -GGTMD--KQIHF-WNAATG------------------------ARVNTVDAGSQVTSLI 310
Query: 520 IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL-DHLGPVTDCSFSPSNEY 578
+ P S + HG D+ + I+ ++ L+ + ++ H V + SP
Sbjct: 311 --WSPHSKEIMSTHGF-----PDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRI 363
Query: 579 LVASDAHRKVVLYRVPD 595
L + + + +RV D
Sbjct: 364 LSTAASDENLKFWRVYD 380
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 69/310 (22%), Positives = 116/310 (37%), Gaps = 75/310 (24%)
Query: 66 SVIIRNIENPAISDIY-TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK------- 117
+V + N ++ ++S + T+ S V K+S G +++ G +G V I+D ++
Sbjct: 114 NVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA 173
Query: 118 ------------EHILKN-------EFHPIGGPIKDIGTLLSLTS-IRNILVLSIGFYIA 157
H+L + H + IGTL +S + + S G +A
Sbjct: 174 GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLA 233
Query: 158 SGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG-RERFGHVFMS 216
SG V+IWD + I K +K +AW P ++ G G ++ H + +
Sbjct: 234 SGGNDNVVQIWDA--RSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNA 291
Query: 217 ETGTSVGEISGQSKPINSCDFKP-SRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFV 275
TG V + S+ + S + P S+ G DN ++++
Sbjct: 292 ATGARVNTVDAGSQ-VTSLIWSPHSKEIMSTHGFPDNNLSIWS----------------- 333
Query: 276 QAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS 335
YS SG L ++ PAH V A PDG L TA+
Sbjct: 334 ----YSSSG---------------------LTKQVDIPAHDTRVLYSALSPDGRILSTAA 368
Query: 336 GDKTCKLWDI 345
D+ K W +
Sbjct: 369 SDENLKFWRV 378
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 607 HSAKVNCVAWSP-DSALVAS--GSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQW 660
H+A V VAW P S L+A+ G++D I W+ A+ A+ + SQ+T L W
Sbjct: 258 HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR---VNTVDAGSQVTSLIW 311
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 525 SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDA 584
+S+ H+ ++VG + V IY++ +++ + H V S+ N ++++S +
Sbjct: 138 ASVKWSHDGSFLSVGLGNGLVDIYDVESQT-KLRTMAGHQARVGCLSW---NRHVLSSGS 193
Query: 585 HRKVVLYRVPDFELAHNKEWGF--HSAKVNCVAWSPDSALVASGSLDTTIIIWSLAS 639
+ + D +A+++ HS++V +AW D +ASG D + IW S
Sbjct: 194 RSGAIHHH--DVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS 248
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 87/207 (42%), Gaps = 28/207 (13%)
Query: 245 IITGSEDNTIAVFE----------GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDG 294
+I+GS D T+ +++ G P K H+ FV + S S+ +D
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHK---ALTGHNHFVSDLALSQENCFAISSSWDK 98
Query: 295 KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEF 354
+ L+D + H+ VY+VA+ PD Q+L+A ++ KLW+I + S
Sbjct: 99 TLRLWDLRTGTTYKRF--VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSA 156
Query: 355 IMGNQVEDQQVSCLWQGDYLLTVS-LSGFISY---------LDVNNPSTPIR-VIKGHNK 403
N + VSC+ + + + + F Y L V N + IR K H
Sbjct: 157 EKENHSD--WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHES 214
Query: 404 PITALALSPDRGTVFTGSHDGFITRWN 430
+ L++SP+ + TG D + W+
Sbjct: 215 NVNHLSISPNGKYIATGGKDKKLLIWD 241
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/273 (21%), Positives = 110/273 (40%), Gaps = 32/273 (11%)
Query: 188 IKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIIT 247
+ D+A S +N + ++ ++ TGT+ G + S F P +I++
Sbjct: 79 VSDLALSQEN--CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR-QILS 135
Query: 248 GSEDNTIAVFE--GPPFKFKMTKQEHSRFVQAVRYSP----------SGSHFASAGFDGK 295
+ I ++ G K+ HS +V VRYSP +FAS G+DG+
Sbjct: 136 AGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR 195
Query: 296 VFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSV-VSEF 354
+ +++ + AH+ V ++ P+G + T DK +WDI + EF
Sbjct: 196 LKVWN---TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF 252
Query: 355 IMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVI-----------KGHNK 403
G+ + Q++ + ++ + G + + P+ I KG N
Sbjct: 253 DAGSTI--NQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNP 310
Query: 404 PITALALSPDRGTVFTGSHDGFITRWNAKTGEN 436
T+LA + +F G DG I ++ +T N
Sbjct: 311 QCTSLAWNALGKKLFAGFTDGVIRTFSFETSAN 343
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 50/252 (19%), Positives = 109/252 (43%), Gaps = 34/252 (13%)
Query: 394 PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKA 453
P + + GHN ++ LALS + + S D + W+ +TG + + GH +++ +
Sbjct: 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK-RFVGHQSEVYSVAF 126
Query: 454 T--GELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVEN 511
+ + + G + IK ++ E K S + + ++ V+ I+++
Sbjct: 127 SPDNRQILSAGAEREIKLWNILG------ECKFSSAEK----ENHSDWVSCVRYSPIMKS 176
Query: 512 GAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNK-SLSPKAELDHLGPVTDC 570
KV + P S+ G D ++ ++ N + + KA H V
Sbjct: 177 ANKVQP----FAPYFASV----------GWDGRLKVWNTNFQIRYTFKA---HESNVNHL 219
Query: 571 SFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDT 630
S SP+ +Y+ +K++++ + L + + + +N +A++P VA G+ D
Sbjct: 220 SISPNGKYIATGGKDKKLLIWDI--LNLTYPQREFDAGSTINQIAFNPKLQWVAVGT-DQ 276
Query: 631 TIIIWSLASPAK 642
+ I++L + +K
Sbjct: 277 GVKIFNLMTQSK 288
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 74 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 116
N I + H VN SP+G YIA+G K+ IWD +N
Sbjct: 202 NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 10/111 (9%)
Query: 539 GGADSKVHIYELNNKS------LSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYR 592
G D V I++L + + KA H V+D + S N + ++S + + L+
Sbjct: 45 GSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLW- 103
Query: 593 VPDFELAHN-KEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAK 642
D K + H ++V VA+SPD+ + S + I +W++ K
Sbjct: 104 --DLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK 152
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 607 HSAKVNCVAWSPDSALVASGSLDTTIIIW---SLASPAKHIIIKNAHPQSQIT-RLQWLD 662
H + VN ++ SP+ +A+G D ++IW +L P + + Q +LQW
Sbjct: 212 HESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQW-- 269
Query: 663 NDLLVSVGQDCNTKIWEI 680
V+VG D KI+ +
Sbjct: 270 ----VAVGTDQGVKIFNL 283
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 20/145 (13%)
Query: 92 KYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLS 151
K P Y AS G++++W+T N + + H +++ ++ +
Sbjct: 179 KVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHE--------------SNVNHLSISP 223
Query: 152 IGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFG 211
G YIA+G K+ IWD +N + + EF G I IA++P Q + V G ++
Sbjct: 224 NGKYIATGGKDKKLLIWDILNLTYP-QREFDA-GSTINQIAFNPKLQWVAV---GTDQGV 278
Query: 212 HVFMSETGTSVGEISGQSKPINSCD 236
+F T + + +++PI +
Sbjct: 279 KIFNLMTQSKAPVCTIEAEPITKAE 303
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/304 (22%), Positives = 113/304 (37%), Gaps = 56/304 (18%)
Query: 77 ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIG 136
I+ + T H ++ A+ G +A+ V+I+D N IL + GP+ +
Sbjct: 5 INTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVA 64
Query: 137 TLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD 196
+ G +AS KV IW N +E + + W+P
Sbjct: 65 WAHPM----------YGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPH 114
Query: 197 NQRMVVV--------------GEGRERFGHVFMSET--------------GTSVGEISGQ 228
+ +++ GEG+ + + T G+ + SGQ
Sbjct: 115 DYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQ 174
Query: 229 SKPINSCDFKPSRPFRIITGSEDNTIAVF---EGPPFKFKMTKQEHSRFVQAVRYSPS-- 283
KP+ R +G DN I ++ E +K + + HS +V+ V ++PS
Sbjct: 175 ---------KPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG 225
Query: 284 --GSHFASAGFDGKVFLY--DGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKT 339
S AS DG+VF++ D AS++ S V+ V+W L + GD
Sbjct: 226 LPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNK 285
Query: 340 CKLW 343
LW
Sbjct: 286 VTLW 289
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Query: 529 LDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD-HLGPVTDCSFS-PSNEYLVASDAH- 585
+D+ +A +D V I+++ N A+L H GPV +++ P ++AS ++
Sbjct: 21 MDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD 80
Query: 586 RKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSP-DSALV-ASGSLDTTIIIWSLASPAKH 643
RKV+++R + + E H + VN V W+P D L+ A GS D I + + +
Sbjct: 81 RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW 140
Query: 644 II--IKNAH 650
+ I NAH
Sbjct: 141 EVKKINNAH 149
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/228 (19%), Positives = 94/228 (41%), Gaps = 17/228 (7%)
Query: 261 PFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVY 320
PF + + + V + +S G+ + +G++ L++ A L++ L H+ +
Sbjct: 97 PFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGA-LLNVLN--FHRAPIV 153
Query: 321 AVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIM----GNQVEDQQ--------VSCL 368
+V W DGT +++ + LW++ + +V+ F + G+ + + V
Sbjct: 154 SVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVE 213
Query: 369 WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITR 428
W D + ++ TP + GH+ PI+ L + + + S DG +
Sbjct: 214 WVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRI 273
Query: 429 WNAKTGENDRVQGAGHGNQINGMKATG-ELLYTCGIDDTIKQVDLSSN 475
W+ G N + GH I G + + +C +D +++ L N
Sbjct: 274 WHGGNG-NSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQN 320
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 23/153 (15%)
Query: 335 SGDKTC-KLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSL------------SG 381
+G K C K+WDI GN+ Q+ CL + +Y+ + L +
Sbjct: 68 TGGKGCVKVWDISHP--------GNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119
Query: 382 FISYLDVNNPSTPIRVIKGHNKPIT-ALALSPDRGTVFTGSHDGFITRWNAKTGENDR-V 439
+S D+ P+ I+ + P ALA+SPD F+ DG I W+ R
Sbjct: 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179
Query: 440 QGAGHGNQINGMKATGELLYTCGIDDTIKQVDL 472
QG G + G L+T G+D+T++ DL
Sbjct: 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 79/205 (38%), Gaps = 10/205 (4%)
Query: 260 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYD---GASADLVSELGNPAHK 316
P ++ H V AV S H + G G V ++D + VS+L
Sbjct: 39 PRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRD 97
Query: 317 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKS-VVSEFIMGNQVEDQQVSCLWQGDYLL 375
+ + PDG L+ T +WD+ + + + + ++
Sbjct: 98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCF 157
Query: 376 TVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGE 435
+ G I+ D++N T +R +GH + + +S D ++TG D + W+ + G
Sbjct: 158 SCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR 216
Query: 436 NDRVQGAGHGNQIN--GMKATGELL 458
++Q +QI G TGE L
Sbjct: 217 --QLQQHDFTSQIFSLGYCPTGEWL 239
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 60/305 (19%), Positives = 108/305 (35%), Gaps = 54/305 (17%)
Query: 60 LYTNGNSVI-IRNIENPAISDIYTEHSCA-----VNVAKYSPSGFYIASGDISGKVRIWD 113
+YT G + + +I +P ++ C + K P G + G + + IWD
Sbjct: 66 VYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125
Query: 114 TVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLS----IGFYIASGDISGKVRIWD 169
+K E L S L +S + F S G + +WD
Sbjct: 126 LAAPTPRIKAE-------------LTSSAPACYALAISPDSKVCFSCCS---DGNIAVWD 169
Query: 170 TVNKEHILKNEFHPIGGPIKDIA------WSP--DNQ-RMVVVGEGRERFGHVFMSETGT 220
N+ + + + H G DI+ W+ DN R + EGR+ H F S+
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQ--- 226
Query: 221 SVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRY 280
I S + P+ + + N + P K+++ H V ++++
Sbjct: 227 -----------IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL--HLHESCVLSLKF 273
Query: 281 SPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTC 340
+ G F S G D L + + + V + D ++T SGDK
Sbjct: 274 AYCGKWFVSTGKDN---LLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKA 330
Query: 341 KLWDI 345
++++
Sbjct: 331 TVYEV 335
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 6/142 (4%)
Query: 500 TVTVKQISIVENGAKVSSLPI---DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLS 556
V V IS N + VS L D S L + + VGG S + I++L +
Sbjct: 73 CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR 132
Query: 557 PKAELDHLGPVT-DCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVA 615
KAEL P + SP ++ + + + ++ + + L +++ H+ +C+
Sbjct: 133 IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLV--RQFQGHTDGASCID 190
Query: 616 WSPDSALVASGSLDTTIIIWSL 637
S D + +G LD T+ W L
Sbjct: 191 ISNDGTKLWTGGLDNTVRSWDL 212
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 88/212 (41%), Gaps = 14/212 (6%)
Query: 267 TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKP 326
+ E S+ V ++Y S D + ++D + + L H G V + +
Sbjct: 128 CRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRIL--TGHTGSVLCLQY-- 181
Query: 327 DGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYL 386
D ++T S D T ++WD+ T +++ I + + + ++T S I+
Sbjct: 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA---VLHLRFNNGMMVTCSKDRSIAVW 238
Query: 387 DVNNPS--TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGH 444
D+ +P+ T RV+ GH + + D + + S D I WN T E R GH
Sbjct: 239 DMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLN-GH 295
Query: 445 GNQINGMKATGELLYTCGIDDTIKQVDLSSNA 476
I ++ L+ + D+TI+ D+ A
Sbjct: 296 KRGIACLQYRDRLVVSGSSDNTIRLWDIECGA 327
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 93/249 (37%), Gaps = 34/249 (13%)
Query: 100 IASGDISGKVRIWD--TVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIA 157
I SG ++IWD T+ + IL G++L L +++
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGH----------TGSVLCLQYDERVII-------- 187
Query: 158 SGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE 217
+G VR+WD VN +L H + +N MV + R S
Sbjct: 188 TGSSDSTVRVWD-VNTGEMLNTLIHHCEAVLH---LRFNNGMMVTCSKDRSIAVWDMASP 243
Query: 218 TGTSVGEI-SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQ 276
T ++ + G +N DF I++ S D TI V+ +F T H R +
Sbjct: 244 TDITLRRVLVGHRAAVNVVDFDDKY---IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA 300
Query: 277 AVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASG 336
++Y S D + L+D + L H+ V + + D ++++ +
Sbjct: 301 CLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL--EGHEELVRCI--RFDNKRIVSGAY 354
Query: 337 DKTCKLWDI 345
D K+WD+
Sbjct: 355 DGKIKVWDL 363
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 38/195 (19%), Positives = 83/195 (42%), Gaps = 15/195 (7%)
Query: 491 LDIDENTLVT---VTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHI 547
L DE ++T + ++ V G +++L I + + + L +G++ D + +
Sbjct: 179 LQYDERVIITGSSDSTVRVWDVNTGEMLNTL-IHHCEAVLHLRFNNGMMVTCSKDRSIAV 237
Query: 548 YELNNKS--LSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWG 605
+++ + + + + H V F ++Y+V++ R + ++ E +
Sbjct: 238 WDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFV--RTLN 293
Query: 606 FHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWLDNDL 665
H + C+ + LV SGS D TI +W + A ++ ++ R DN
Sbjct: 294 GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGA---CLRVLEGHEELVRCIRFDNKR 348
Query: 666 LVSVGQDCNTKIWEI 680
+VS D K+W++
Sbjct: 349 IVSGAYDGKIKVWDL 363
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 74/181 (40%), Gaps = 22/181 (12%)
Query: 269 QEHSRFVQAVRYSPSGSH-FASAGFDGKVFLYD--GASADLVS------------ELGNP 313
Q H + + AV +SP + A+A D +V L+D AS L++ E N
Sbjct: 183 QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANT 242
Query: 314 AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDI---ETKSVVSEFIMGNQVEDQQ--VSCL 368
AH G V + + DG LLT D +LW+ E V + N + + VSC
Sbjct: 243 AHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCG 302
Query: 369 WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITR 428
+++ S Y + I ++KGH K + + +++GS D I
Sbjct: 303 CSSEFVFVPYGSTIAVYTVYSGEQ--ITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILA 360
Query: 429 W 429
W
Sbjct: 361 W 361
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 86/277 (31%), Gaps = 79/277 (28%)
Query: 284 GSHFASAGFDGKVFLYDGASADLVSELGNPA-----------HKGGVYAVAWKPDGTQLL 332
G + S G DG + LYD ++ S A H+ V V W P T +
Sbjct: 56 GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115
Query: 333 TASG-DKTCKLWDIETKSVVSEFIMGNQVEDQQVS------CL----------------- 368
T+S DKT K+WD T F V +S CL
Sbjct: 116 TSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175
Query: 369 ------WQG--------------DYLL-TVSLSGFISYLDVNNPSTPIRVI--------- 398
QG DY+L T S + DV S + +
Sbjct: 176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQ 235
Query: 399 ------KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMK 452
HN + L + D + T D + WN+ GEN V +G N K
Sbjct: 236 AVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVN---YGKVCNNSK 292
Query: 453 ATGELLYTCGIDDTIKQVDLSS-----NAYSGPEVKL 484
+ +CG V S YSG ++ +
Sbjct: 293 KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITM 329
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 87/213 (40%), Gaps = 22/213 (10%)
Query: 155 YIASGDISGKVRIWD--TVNKEHIL---KNEFHPIGGPIKDIAWSPDNQRMV--VVGEGR 207
Y+ S + +WD KEH + KN F ++D+AW ++ + V + +
Sbjct: 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 255
Query: 208 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT 267
+ T + + +N F P F + TGS D T+A+++ K K+
Sbjct: 256 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 315
Query: 268 KQE-HSRFVQAVRYSPSGSH-FASAGFDGKVFLYD-----GASADLVSELGNP------- 313
E H + V++SP AS+G D ++ ++D + +E G P
Sbjct: 316 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 375
Query: 314 AHKGGVYAVAWKPDGTQLL-TASGDKTCKLWDI 345
H + +W P+ ++ + S D ++W +
Sbjct: 376 GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 79/160 (49%), Gaps = 23/160 (14%)
Query: 542 DSKVHIYEL-NNKSLSPKAELD-HLGPVTDCSFSPSNEYLVAS-DAHRKVVLYRVPDFEL 598
D K+ I++ NN + P +D H V SF+P +E+++A+ A + V L+ + + +L
Sbjct: 253 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 312
Query: 599 A-HNKEWGFHSAKVNCVAWSP-DSALVASGSLDTTIIIWSLAS-------------PAKH 643
H+ E H ++ V WSP + ++AS D + +W L+ P +
Sbjct: 313 KLHSFE--SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 370
Query: 644 IIIKNAHPQSQITRLQWLDND--LLVSVGQDCNTKIWEIA 681
+ I H ++I+ W N+ ++ SV +D ++W++A
Sbjct: 371 LFIHGGH-TAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 104/254 (40%), Gaps = 22/254 (8%)
Query: 88 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNI 147
+VA S G +AS SG V +W+ + KE +L N+F DI ++ +
Sbjct: 98 TDVAWVSEKGILVASD--SGAVELWEILEKESLLVNKFAKY--EHDDI--------VKTL 145
Query: 148 LVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVV-VGE- 205
V S G SG V++WD ++++ +LK+ ++ + +A P + + GE
Sbjct: 146 SVFSDGTQAVSGGKDFSVKVWD-LSQKAVLKS-YNAHSSEVNCVAACPGKDTIFLSCGED 203
Query: 206 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK 265
GR + T + + + P S + P + G E +++
Sbjct: 204 GRILLWDTRKPKPATRIDFCASDTIP-TSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA 262
Query: 266 MTKQEHSRFVQAVRYSPSGSHF-ASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW 324
T HS+ + + YS S F AS D V + D AD + +H+ V VAW
Sbjct: 263 QTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLD---ADFSEVFRDLSHRDFVTGVAW 319
Query: 325 KP-DGTQLLTASGD 337
P D ++ T D
Sbjct: 320 SPLDHSKFTTVGWD 333
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 3/148 (2%)
Query: 306 LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQV 365
LV++ H V ++ DGTQ ++ D + K+WD+ K+V+ + + +
Sbjct: 129 LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVA 188
Query: 366 SCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPI-TALALSPDRGTVF-TGSHD 423
+C + L+ G I D P R+ + I T++ P++ F G
Sbjct: 189 ACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDET 248
Query: 424 GFITRWNAKTGENDRVQGAGHGNQINGM 451
G ++ N K ++ + A H I G+
Sbjct: 249 GNVSLVNIKNPDSAQTS-AVHSQNITGL 275
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 84/222 (37%), Gaps = 28/222 (12%)
Query: 83 EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLT 142
EH V G SG V++WD ++++ +LK+ ++ + +
Sbjct: 137 EHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD-LSQKAVLKS-YNAHSSEVNCVAACPG-- 192
Query: 143 SIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVV 202
++ + LS G G++ +WDT + + +F + W P+
Sbjct: 193 --KDTIFLSCG-------EDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA 243
Query: 203 VGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFK------PSRPFRIITGSEDNTIAV 256
G+ V + S Q+ ++S + S PF + + SED T+AV
Sbjct: 244 CGDETGNVSLVNIKNPD------SAQTSAVHSQNITGLAYSYHSSPF-LASISEDCTVAV 296
Query: 257 FEGPPFKFKMTKQEHSRFVQAVRYSP-SGSHFASAGFDGKVF 297
+ F H FV V +SP S F + G+D KV
Sbjct: 297 LDA-DFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVL 337
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 79/160 (49%), Gaps = 23/160 (14%)
Query: 542 DSKVHIYEL-NNKSLSPKAELD-HLGPVTDCSFSPSNEYLVAS-DAHRKVVLYRVPDFEL 598
D K+ I++ NN + P +D H V SF+P +E+++A+ A + V L+ + + +L
Sbjct: 257 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 316
Query: 599 A-HNKEWGFHSAKVNCVAWSP-DSALVASGSLDTTIIIWSLAS-------------PAKH 643
H+ E H ++ V WSP + ++AS D + +W L+ P +
Sbjct: 317 KLHSFE--SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 374
Query: 644 IIIKNAHPQSQITRLQWLDND--LLVSVGQDCNTKIWEIA 681
+ I H ++I+ W N+ ++ SV +D ++W++A
Sbjct: 375 LFIHGGH-TAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 413
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 87/213 (40%), Gaps = 22/213 (10%)
Query: 155 YIASGDISGKVRIWD--TVNKEHIL---KNEFHPIGGPIKDIAWSPDNQRMV--VVGEGR 207
Y+ S + +WD KEH + KN F ++D+AW ++ + V + +
Sbjct: 200 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 259
Query: 208 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT 267
+ T + + +N F P F + TGS D T+A+++ K K+
Sbjct: 260 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 319
Query: 268 KQE-HSRFVQAVRYSPSGSH-FASAGFDGKVFLYD-----GASADLVSELGNP------- 313
E H + V++SP AS+G D ++ ++D + +E G P
Sbjct: 320 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 379
Query: 314 AHKGGVYAVAWKPDGTQLL-TASGDKTCKLWDI 345
H + +W P+ ++ + S D ++W +
Sbjct: 380 GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 87/213 (40%), Gaps = 22/213 (10%)
Query: 155 YIASGDISGKVRIWD--TVNKEHIL---KNEFHPIGGPIKDIAWSPDNQRMV--VVGEGR 207
Y+ S + +WD KEH + KN F ++D+AW ++ + V + +
Sbjct: 198 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 257
Query: 208 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT 267
+ T + + +N F P F + TGS D T+A+++ K K+
Sbjct: 258 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 317
Query: 268 KQE-HSRFVQAVRYSPSGSH-FASAGFDGKVFLYD-----GASADLVSELGNP------- 313
E H + V++SP AS+G D ++ ++D + +E G P
Sbjct: 318 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 377
Query: 314 AHKGGVYAVAWKPDGTQLL-TASGDKTCKLWDI 345
H + +W P+ ++ + S D ++W +
Sbjct: 378 GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 79/160 (49%), Gaps = 23/160 (14%)
Query: 542 DSKVHIYEL-NNKSLSPKAELD-HLGPVTDCSFSPSNEYLVAS-DAHRKVVLYRVPDFEL 598
D K+ I++ NN + P +D H V SF+P +E+++A+ A + V L+ + + +L
Sbjct: 255 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 314
Query: 599 A-HNKEWGFHSAKVNCVAWSP-DSALVASGSLDTTIIIWSLAS-------------PAKH 643
H+ E H ++ V WSP + ++AS D + +W L+ P +
Sbjct: 315 KLHSFE--SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 372
Query: 644 IIIKNAHPQSQITRLQWLDND--LLVSVGQDCNTKIWEIA 681
+ I H ++I+ W N+ ++ SV +D ++W++A
Sbjct: 373 LFIHGGH-TAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 411
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 108/265 (40%), Gaps = 31/265 (11%)
Query: 48 IVLGGDPKGKNFLYTNGNSVIIRNIENPAISDI--YTEHSCAVNVAKY-SPSGFYIASGD 104
I+ G G LY+ N N AI+ + ++ HS +V K+ + +ASG
Sbjct: 81 IIAGALDNGSLELYS-------TNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGG 133
Query: 105 ISGKVRIWDTVNKEHILKNEFHPI--GGPIKDIGTLLSLTSIRNILVLSIGFYIASGDIS 162
+G++ IWD +NK + + P+ G + + ++SL + S+ AS S
Sbjct: 134 NNGEIFIWD-MNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQ-----SLAHVFASAGSS 187
Query: 163 GKVRIWDTVNKEHILKNEFHPIGGPIKD----IAWSPDNQRMVVVGEGRERFGHVF---M 215
IWD K+ ++ + IK + W P N V G + + +
Sbjct: 188 NFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL 247
Query: 216 SETGTSVGEIS-GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSR- 273
T + ++ G K I S D+ +++ DNT+ ++ P + Q +R
Sbjct: 248 RNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN--PESAEQLSQFPARG 305
Query: 274 -FVQAVRYSPSGSH-FASAGFDGKV 296
+ +++P FA A FD K+
Sbjct: 306 NWCFKTKFAPEAPDLFACASFDNKI 330
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 293 DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASG-DKTCKLWDIETKSVV 351
D + ++D +A+ + N H+ G+ ++ W LL +SG D T LW+ E+ +
Sbjct: 239 DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQL 298
Query: 352 SEF 354
S+F
Sbjct: 299 SQF 301
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 37/175 (21%)
Query: 532 EHGLVAVGGADSKVHIYELNNKS--------LSPKAELDHLGPVTDCSFSPSNEYLVAS- 582
+ ++A GG + ++ I+++N + L+P + + V +++ S ++ AS
Sbjct: 125 QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA 184
Query: 583 -----------DAHRKVV--LYRVPDFELAHNKEWGFHSAKVNCVAWSPDSAL---VASG 626
A ++V+ Y P+ + +++ V W P ++ A+G
Sbjct: 185 GSSNFASIWDLKAKKEVIHLSYTSPNSGIKQ---------QLSVVEWHPKNSTRVATATG 235
Query: 627 S-LDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWLDND--LLVSVGQDCNTKIW 678
S D +I+IW L + + N Q I L W D LL+S G+D +W
Sbjct: 236 SDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLW 290
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 24/179 (13%)
Query: 523 EPSSISLDHEHGLVAVGGADSKVHIYEL-NNKSLSPKAELD-HLGPVTDCSFSPSNEYLV 580
E S L HE L D K+ I++ +N + P +D H V SF+P +E+++
Sbjct: 231 EDVSWHLLHE-SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFIL 289
Query: 581 AS-DAHRKVVLYRVPDFELA-HNKEWGFHSAKVNCVAWSP-DSALVASGSLDTTIIIWSL 637
A+ A + V L+ + + +L H+ E H ++ V WSP + ++AS D + +W L
Sbjct: 290 ATGSADKTVALWDLRNLKLKLHSFE--SHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Query: 638 AS-------------PAKHIIIKNAHPQSQITRLQWLDND--LLVSVGQDCNTKIWEIA 681
+ P + + I H ++I+ W N+ ++ SV +D ++W++A
Sbjct: 348 SKIGEEQSPEDAEDGPPELLFIHGGH-TAKISDFSWNPNEPWVICSVSEDNIMQVWQMA 405
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 15/136 (11%)
Query: 225 ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE-HSRFVQAVRYSPS 283
+ + +N F P F + TGS D T+A+++ K K+ E H + V++SP
Sbjct: 269 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 328
Query: 284 GSH-FASAGFDGKVFLYD-----GASADLVSELGNP-------AHKGGVYAVAWKPDGTQ 330
AS+G D ++ ++D + +E G P H + +W P+
Sbjct: 329 NETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 388
Query: 331 LL-TASGDKTCKLWDI 345
++ + S D ++W +
Sbjct: 389 VICSVSEDNIMQVWQM 404
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 16/159 (10%)
Query: 326 PDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISY 385
DG L+AS DKT +LWD+ T F+ G++ + V + +++ S I
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 386 LDVNNPSTPIRVIKGHNKPITALALSP------DRGTVFTGSHDGFITRWNAKTG--END 437
+ + + GHN ++ + + P D T+ + +D + WN E D
Sbjct: 134 WTIKGQC--LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 438 RVQGAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLSS 474
+ GH + IN + A+ G L+ + G D I +L++
Sbjct: 192 FI---GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 87/206 (42%), Gaps = 15/206 (7%)
Query: 144 IRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV 203
+++ + + G Y S +R+WD E + H DI D + +++
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI----DKKASMII 123
Query: 204 GEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRP-----FRIITGSEDNTIAVFE 258
R++ V+ + G + + G + ++ P+ II+ D + +
Sbjct: 124 SGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Query: 259 GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGG 318
F+ + H+ + + SP G+ ASAG DG++ L++ A+ + L + +
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL---SAQDE 239
Query: 319 VYAVAWKPDGTQL--LTASGDKTCKL 342
V+++A+ P+ L TA+G K L
Sbjct: 240 VFSLAFSPNRYWLAAATATGIKVFSL 265
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 53/270 (19%), Positives = 110/270 (40%), Gaps = 31/270 (11%)
Query: 394 PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQING--M 451
P+R KGH+ + L+ D + S D + W+ TGE + + GH + + +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ-RFVGHKSDVMSVDI 115
Query: 452 KATGELLYTCGIDDTIKQVDLSSNAYSG--------PEVKLGSQPRGLDIDENTLVTV-- 501
++ + D TIK + + +V++ + D D T+++
Sbjct: 116 DKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA-DDDSVTIISAGN 174
Query: 502 --TVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNK----SL 555
VK ++ + + + + ++++ + L+A G D ++ ++ L K +L
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
Query: 556 SPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNK-EWGFHSAKVN-- 612
S + E V +FSP+ +L A+ A V P + + + E+ +S
Sbjct: 235 SAQDE------VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPH 288
Query: 613 --CVAWSPDSALVASGSLDTTIIIWSLASP 640
+AWS D + +G D I +W + +
Sbjct: 289 AVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 29/163 (17%), Positives = 72/163 (44%), Gaps = 13/163 (7%)
Query: 526 SISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEY------L 579
S+ +D + ++ G D + ++ + + L+ L H V+ P+ + +
Sbjct: 112 SVDIDKKASMIISGSRDKTIKVWTIKGQCLATL--LGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 580 VASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLAS 639
+++ + V + + F++ ++ H++ +N + SPD L+AS D I++W+LA+
Sbjct: 170 ISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 640 PAKHIIIKNAHPQSQITRLQWLDNDLLVSVGQDCNTKIWEIAP 682
+ Q ++ L + N ++ K++ + P
Sbjct: 228 KKAMYTLS---AQDEVFSLAFSPNRYWLAAATATGIKVFSLDP 267
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 16/159 (10%)
Query: 326 PDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISY 385
DG L+AS DKT +LWD+ T F+ G++ + V + +++ S I
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 386 LDVNNPSTPIRVIKGHNKPITALALSP------DRGTVFTGSHDGFITRWNAKTG--END 437
+ + + GHN ++ + + P D T+ + +D + WN E D
Sbjct: 134 WTIKGQC--LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 438 RVQGAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLSS 474
+ GH + IN + A+ G L+ + G D I +L++
Sbjct: 192 FI---GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 87/206 (42%), Gaps = 15/206 (7%)
Query: 144 IRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV 203
+++ + + G Y S +R+WD E + H DI D + +++
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI----DKKASMII 123
Query: 204 GEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRP-----FRIITGSEDNTIAVFE 258
R++ V+ + G + + G + ++ P+ II+ D + +
Sbjct: 124 SGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Query: 259 GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGG 318
F+ + H+ + + SP G+ ASAG DG++ L++ A+ + L + +
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL---SAQDE 239
Query: 319 VYAVAWKPDGTQL--LTASGDKTCKL 342
V+++A+ P+ L TA+G K L
Sbjct: 240 VFSLAFSPNRYWLAAATATGIKVFSL 265
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 53/270 (19%), Positives = 110/270 (40%), Gaps = 31/270 (11%)
Query: 394 PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQING--M 451
P+R KGH+ + L+ D + S D + W+ TGE + + GH + + +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ-RFVGHKSDVMSVDI 115
Query: 452 KATGELLYTCGIDDTIKQVDLSSNAYSG--------PEVKLGSQPRGLDIDENTLVTV-- 501
++ + D TIK + + +V++ + D D T+++
Sbjct: 116 DKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA-DDDSVTIISAGN 174
Query: 502 --TVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNK----SL 555
VK ++ + + + + ++++ + L+A G D ++ ++ L K +L
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
Query: 556 SPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNK-EWGFHSAKVN-- 612
S + E V +FSP+ +L A+ A V P + + + E+ +S
Sbjct: 235 SAQDE------VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPH 288
Query: 613 --CVAWSPDSALVASGSLDTTIIIWSLASP 640
+AWS D + +G D I +W + +
Sbjct: 289 AVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 29/163 (17%), Positives = 72/163 (44%), Gaps = 13/163 (7%)
Query: 526 SISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEY------L 579
S+ +D + ++ G D + ++ + + L+ L H V+ P+ + +
Sbjct: 112 SVDIDKKASMIISGSRDKTIKVWTIKGQCLATL--LGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 580 VASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLAS 639
+++ + V + + F++ ++ H++ +N + SPD L+AS D I++W+LA+
Sbjct: 170 ISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 640 PAKHIIIKNAHPQSQITRLQWLDNDLLVSVGQDCNTKIWEIAP 682
+ Q ++ L + N ++ K++ + P
Sbjct: 228 KKAMYTLS---AQDEVFSLAFSPNRYWLAAATATGIKVFSLDP 267
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 16/159 (10%)
Query: 326 PDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISY 385
DG L+AS DKT +LWD+ T F+ G++ + V + +++ S I
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 386 LDVNNPSTPIRVIKGHNKPITALALSP------DRGTVFTGSHDGFITRWNAKTG--END 437
+ + + GHN ++ + + P D T+ + +D + WN E D
Sbjct: 134 WTIKGQC--LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 438 RVQGAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLSS 474
+ GH + IN + A+ G L+ + G D I +L++
Sbjct: 192 FI---GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 87/206 (42%), Gaps = 15/206 (7%)
Query: 144 IRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV 203
+++ + + G Y S +R+WD E + H DI D + +++
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI----DKKASMII 123
Query: 204 GEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRP-----FRIITGSEDNTIAVFE 258
R++ V+ + G + + G + ++ P+ II+ D + +
Sbjct: 124 SGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Query: 259 GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGG 318
F+ + H+ + + SP G+ ASAG DG++ L++ A+ + L + +
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL---SAQDE 239
Query: 319 VYAVAWKPDGTQL--LTASGDKTCKL 342
V+++A+ P+ L TA+G K L
Sbjct: 240 VFSLAFSPNRYWLAAATATGIKVFSL 265
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/270 (20%), Positives = 111/270 (41%), Gaps = 31/270 (11%)
Query: 394 PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQING--M 451
P+R KGH+ + L+ D + S D + W+ TGE + + GH + + +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ-RFVGHKSDVMSVDI 115
Query: 452 KATGELLYTCGIDDTIKQVDLSSNAYSG--------PEVKLGSQPRGLDIDENTLVTV-- 501
++ + D TIK + + +V++ + D D T+++
Sbjct: 116 DKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA-DDDSVTIISAGN 174
Query: 502 --TVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNK----SL 555
VK ++ + + + + ++++ + L+A G D ++ ++ L K +L
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
Query: 556 SPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNK-EWGFHSAKVN-- 612
S + E V +FSP+ +L A+ A V P + + + E+ +SA
Sbjct: 235 SAQDE------VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPH 288
Query: 613 --CVAWSPDSALVASGSLDTTIIIWSLASP 640
+AWS D + +G D I +W + +
Sbjct: 289 AVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 29/163 (17%), Positives = 72/163 (44%), Gaps = 13/163 (7%)
Query: 526 SISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEY------L 579
S+ +D + ++ G D + ++ + + L+ L H V+ P+ + +
Sbjct: 112 SVDIDKKASMIISGSRDKTIKVWTIKGQCLATL--LGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 580 VASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLAS 639
+++ + V + + F++ ++ H++ +N + SPD L+AS D I++W+LA+
Sbjct: 170 ISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 640 PAKHIIIKNAHPQSQITRLQWLDNDLLVSVGQDCNTKIWEIAP 682
+ Q ++ L + N ++ K++ + P
Sbjct: 228 KKAMYTLS---AQDEVFSLAFSPNRYWLAAATATGIKVFSLDP 267
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 16/159 (10%)
Query: 326 PDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISY 385
DG L+AS DKT +LWD+ T F+ G++ + V + +++ S I
Sbjct: 69 ADGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKV 127
Query: 386 LDVNNPSTPIRVIKGHNKPITALALSP------DRGTVFTGSHDGFITRWNAKTG--END 437
+ + + GHN ++ + + P D T+ + +D + WN E D
Sbjct: 128 WTIKGQC--LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 185
Query: 438 RVQGAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLSS 474
+ GH + IN + A+ G L+ + G D I +L++
Sbjct: 186 FI---GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 221
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 87/206 (42%), Gaps = 15/206 (7%)
Query: 144 IRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV 203
+++ + + G Y S +R+WD E + H DI D + +++
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI----DKKASMII 117
Query: 204 GEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRP-----FRIITGSEDNTIAVFE 258
R++ V+ + G + + G + ++ P+ II+ D + +
Sbjct: 118 SGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 176
Query: 259 GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGG 318
F+ + H+ + + SP G+ ASAG DG++ L++ A+ + L + +
Sbjct: 177 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL---SAQDE 233
Query: 319 VYAVAWKPDGTQL--LTASGDKTCKL 342
V+++A+ P+ L TA+G K L
Sbjct: 234 VFSLAFSPNRYWLAAATATGIKVFSL 259
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 53/270 (19%), Positives = 110/270 (40%), Gaps = 31/270 (11%)
Query: 394 PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQING--M 451
P+R KGH+ + L+ D + S D + W+ TGE + + GH + + +
Sbjct: 51 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ-RFVGHKSDVMSVDI 109
Query: 452 KATGELLYTCGIDDTIKQVDLSSNAYSG--------PEVKLGSQPRGLDIDENTLVTV-- 501
++ + D TIK + + +V++ + D D T+++
Sbjct: 110 DKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA-DDDSVTIISAGN 168
Query: 502 --TVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNK----SL 555
VK ++ + + + + ++++ + L+A G D ++ ++ L K +L
Sbjct: 169 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 228
Query: 556 SPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNK-EWGFHSAKVN-- 612
S + E V +FSP+ +L A+ A V P + + + E+ +S
Sbjct: 229 SAQDE------VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPH 282
Query: 613 --CVAWSPDSALVASGSLDTTIIIWSLASP 640
+AWS D + +G D I +W + +
Sbjct: 283 AVSLAWSADGQTLFAGYTDNVIRVWQVMTA 312
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/163 (17%), Positives = 72/163 (44%), Gaps = 13/163 (7%)
Query: 526 SISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEY------L 579
S+ +D + ++ G D + ++ + + L+ L H V+ P+ + +
Sbjct: 106 SVDIDKKASMIISGSRDKTIKVWTIKGQCLATL--LGHNDWVSQVRVVPNEKADDDSVTI 163
Query: 580 VASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLAS 639
+++ + V + + F++ ++ H++ +N + SPD L+AS D I++W+LA+
Sbjct: 164 ISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 221
Query: 640 PAKHIIIKNAHPQSQITRLQWLDNDLLVSVGQDCNTKIWEIAP 682
+ Q ++ L + N ++ K++ + P
Sbjct: 222 KKAMYTLS---AQDEVFSLAFSPNRYWLAAATATGIKVFSLDP 261
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 571 SFSPSNEYLVASDAHRKVVLYRVP--DFELAHNKEWGFHSAKVNCVAWSPDSALVASGSL 628
SF S L RK+ L V DF L + H + VAW P ++L+A+GS
Sbjct: 19 SFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF 78
Query: 629 DTTIIIWSLASPAKH------IIIKNAHPQSQITRLQWL-DNDLLVSVGQDCNTKIWE 679
D+T+ IW+ A + I H ++++ + W D L + +D + IWE
Sbjct: 79 DSTVSIWAKEESADRTFEMDLLAIIEGH-ENEVKGVAWSNDGYYLATCSRDKSVWIWE 135
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 9/134 (6%)
Query: 306 LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVS------EFIMGNQ 359
L+ L AHK + +VAW+P + L S D T +W E + + I G++
Sbjct: 48 LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHE 107
Query: 360 VEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTP---IRVIKGHNKPITALALSPDRGT 416
E + V+ G YL T S + + + I V++ H++ + + P
Sbjct: 108 NEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEAL 167
Query: 417 VFTGSHDGFITRWN 430
+ + S+D + W
Sbjct: 168 LASSSYDDTVRIWK 181
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 110/290 (37%), Gaps = 42/290 (14%)
Query: 82 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSL 141
T H A+ + P +A+G V IW KE F LL++
Sbjct: 55 TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW---AKEESADRTFEM---------DLLAI 102
Query: 142 -----TSIRNILVLSIGFYIASGDISGKVRIWDT--VNKEHILKNEFHPIGGPIKDIAWS 194
++ + + G+Y+A+ V IW+T +E+ + +K + W
Sbjct: 103 IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162
Query: 195 PDNQRMVVVGEGRERFGHVF--MSETGTSVGEISGQSKPINSCDF-KPSRPFRIITGSED 251
P ++ + ++ + V ++G + S DF K FR+ +GS+D
Sbjct: 163 P--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDD 220
Query: 252 NTIAVFEGPPFKFKMTKQE----------HSRFVQAVRYSPSGSHFASAGFDGKVFLYDG 301
+T+ V++ + +QE H R V V + +G AS G DG + +Y+
Sbjct: 221 STVRVWKYMG-DDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGL-IASVGADGVLAVYEE 278
Query: 302 ASADLVSELGNPAHKGGVY---AVAW-KPDGTQLLTASGDK-TCKLWDIE 346
+ A GVY V W + +G +L GD W +E
Sbjct: 279 VDGEW-KVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 14/112 (12%)
Query: 535 LVAVGGADSKVHIYELNNKSLSPKAELD-------HLGPVTDCSFSPSNEYLVASDAHRK 587
L+A G DS V I+ +S E+D H V ++S YL +
Sbjct: 72 LLAAGSFDSTVSIW-AKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKS 130
Query: 588 VVLYRV----PDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIW 635
V ++ ++E + HS V V W P AL+AS S D T+ IW
Sbjct: 131 VWIWETDESGEEYECISVLQ--EHSQDVKHVIWHPSEALLASSSYDDTVRIW 180
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 97/243 (39%), Gaps = 21/243 (8%)
Query: 97 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYI 156
G +AS SG V +W+ E ++ ++F DI + + VLS G
Sbjct: 95 GILVASD--SGAVELWELDENETLIVSKFCKYEH--DDI--------VSTVSVLSSGTQA 142
Query: 157 ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP--DNQRMVVVGEGRERFGHVF 214
SG +++WD + ++ + + + +A SP D+ + + R
Sbjct: 143 VSGSKDICIKVWDLA--QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR 200
Query: 215 MSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRF 274
+ + +G + P S + P + + G E+ T+++ + ++ HS+
Sbjct: 201 CPKPASQIGCSAPGYLP-TSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQC 259
Query: 275 VQAVRYSPSGSHF-ASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLT 333
V + +SP F AS D + + D + ++L + AH+ V W P LLT
Sbjct: 260 VTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL---FRSQAHRDFVRDATWSPLNHSLLT 316
Query: 334 ASG 336
G
Sbjct: 317 TVG 319
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Query: 244 RIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSP-SGSHFASAGFDGKVFLYDGA 302
+ ++GS+D I V++ + + H+ V V SP S F S D ++ L+D
Sbjct: 141 QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR 200
Query: 303 SADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVED 362
S++G A ++AW P +++ GD+ + ++TKS + ++ + V
Sbjct: 201 CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVF-GDENGTVSLVDTKS--TSCVLSSAVHS 257
Query: 363 QQVS 366
Q V+
Sbjct: 258 QCVT 261
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 15/154 (9%)
Query: 306 LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQV 365
+VS+ H V V+ GTQ ++ S D K+WD+ + V+S + + QV
Sbjct: 117 IVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY----RAHAAQV 172
Query: 366 SCLWQGDY----LLTVSLSGFISYLDVNNPSTPIRVIKGHNKP---ITALALSPDRGTVF 418
+C+ + L+ S I D P ++ G + P T+LA P + VF
Sbjct: 173 TCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI--GCSAPGYLPTSLAWHPQQSEVF 230
Query: 419 T-GSHDGFITRWNAKTGENDRVQGAGHGNQINGM 451
G +G ++ + K+ + + A H + G+
Sbjct: 231 VFGDENGTVSLVDTKS-TSCVLSSAVHSQCVTGL 263
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 86/218 (39%), Gaps = 22/218 (10%)
Query: 83 EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLT 142
EH V+ SG SG +++WD + ++ + + + +
Sbjct: 125 EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA--QQVVLSSYRAHAAQVTCVAASPHKD 182
Query: 143 SIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVV 202
S+ F S D ++ +WDT + + G +AW P + V
Sbjct: 183 SV---------FLSCSED--NRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV 231
Query: 203 VGEGRERFGHVFMSETGTSVGEISG--QSKPINSCDFKP-SRPFRIITGSEDNTIAVFEG 259
G+ G V + +T ++ +S S+ + F P S PF + + SED ++AV +
Sbjct: 232 FGDEN---GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPF-LASLSEDCSLAVLDS 287
Query: 260 PPFKFKMTKQEHSRFVQAVRYSP-SGSHFASAGFDGKV 296
+ Q H FV+ +SP + S + G+D +V
Sbjct: 288 SLSEL-FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQV 324
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 607 HSAKVNCVAWSP--DSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQW 660
H+A+V CVA SP DS + S S D I++W P I + P T L W
Sbjct: 168 HAAQVTCVAASPHKDSVFL-SCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAW 222
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 315 HKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVV 351
H G V V W DG+++ TAS DKT K+WD+ + +
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI 121
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 535 LVAVGGADSKVHIYELNNKSLS-PKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 593
+ G + V +E+ + + PKA+ H GPV D +S + + + ++
Sbjct: 56 FLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW-- 113
Query: 594 PDFELAHNK--EWGFHSAKVNCVAW--SPDSALVASGSLDTTIIIWSLASPAKHIIIK 647
+L+ N+ + H A V + W +P+ + V +GS D T+ W S ++++
Sbjct: 114 ---DLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ 168
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 69/176 (39%), Gaps = 17/176 (9%)
Query: 371 GDYLLTVSLSGFISYLDVNNPSTPI-RVIKGHNKPITALALSPDRGTVFTGSHDGFITRW 429
G++L+ S + + +V + I + + H P+ + S D VFT S D W
Sbjct: 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113
Query: 430 NAKTGENDRVQGAGHGNQINGMKATGELLYTCGI----DDTIKQVDLSSNAYSGPEVKLG 485
+ + N +Q A H + + Y+C + D T+K D S S P + L
Sbjct: 114 DLSS--NQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS---SNPMMVLQ 168
Query: 486 SQPRGLDIDENTLVTVTVKQISIVENGAKVSSL---PIDYEPSSISLDHEHGLVAV 538
R D V + ++ E G V L P ++ L H+H VA+
Sbjct: 169 LPERCYCAD----VIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAI 220
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
Query: 571 SFSPSN---EYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGS 627
SFSP +L+A V + V D K H+ V V WS D + V + S
Sbjct: 46 SFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS 105
Query: 628 LDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWLDNDLLVSVGQDCNTKIWE 679
D T +W L+S I ++ P I ++ + +++ D K W+
Sbjct: 106 CDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 268 KQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW--K 325
+Q H+ V V +S GS +A D ++D +S + H V + W
Sbjct: 82 QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIA---QHDAPVKTIHWIKA 138
Query: 326 PDGTQLLTASGDKTCKLWDIET 347
P+ + ++T S DKT K WD +
Sbjct: 139 PNYSCVMTGSWDKTLKFWDTRS 160
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/133 (19%), Positives = 56/133 (42%), Gaps = 8/133 (6%)
Query: 131 PIKDIGTLLSLTSIRNILVLSI----GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGG 186
P+KDI S L S G ++ +G + VR W+ + + G
Sbjct: 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTG 87
Query: 187 PIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFR-I 245
P+ D+ WS D + V ++ ++ + ++ +I+ P+ + + + + +
Sbjct: 88 PVLDVCWSDDGSK--VFTASCDKTAKMWDLSSNQAI-QIAQHDAPVKTIHWIKAPNYSCV 144
Query: 246 ITGSEDNTIAVFE 258
+TGS D T+ ++
Sbjct: 145 MTGSWDKTLKFWD 157
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 16/159 (10%)
Query: 326 PDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISY 385
DG L+AS DKT +LWD+ T F+ G++ + V + +++ S I
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVXSVDIDKKASXIISGSRDKTIKV 133
Query: 386 LDVNNPSTPIRVIKGHNKPITALALSP------DRGTVFTGSHDGFITRWNAKTG--END 437
+ + + GHN ++ + + P D T+ + +D + WN E D
Sbjct: 134 WTIKGQC--LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEAD 191
Query: 438 RVQGAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLSS 474
+ GH + IN + A+ G L+ + G D I +L++
Sbjct: 192 FI---GHNSNINTLTASPDGTLIASAGKDGEIXLWNLAA 227
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/239 (19%), Positives = 96/239 (40%), Gaps = 19/239 (7%)
Query: 144 IRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV 203
+++ + + G Y S +R+WD E + H DI D + ++
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDI----DKKASXII 123
Query: 204 GEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSR-----PFRIITGSEDNTIAVFE 258
R++ V+ + G + + G + ++ P+ II+ D + +
Sbjct: 124 SGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWN 182
Query: 259 GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGG 318
F+ + H+ + + SP G+ ASAG DG++ L++ A+ L + +
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTL---SAQDE 239
Query: 319 VYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVS----EFI-MGNQVEDQQVSCLWQGD 372
V+++A+ P+ L A+ K++ ++ + +V EF E VS W D
Sbjct: 240 VFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 53/270 (19%), Positives = 109/270 (40%), Gaps = 31/270 (11%)
Query: 394 PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQING--M 451
P+R KGH+ + L+ D + S D + W+ TGE + + GH + + +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ-RFVGHKSDVXSVDI 115
Query: 452 KATGELLYTCGIDDTIKQVDLSSNAYSG--------PEVKLGSQPRGLDIDENTLVTV-- 501
+ + D TIK + + +V++ + D D T+++
Sbjct: 116 DKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA-DDDSVTIISAGN 174
Query: 502 --TVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNK----SL 555
VK ++ + + + + ++++ + L+A G D ++ ++ L K +L
Sbjct: 175 DKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTL 234
Query: 556 SPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNK-EWGFHSAKVN-- 612
S + E V +FSP+ +L A+ A V P + + + E+ +S
Sbjct: 235 SAQDE------VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPH 288
Query: 613 --CVAWSPDSALVASGSLDTTIIIWSLASP 640
+AWS D + +G D I +W + +
Sbjct: 289 AVSLAWSADGQTLFAGYTDNVIRVWQVXTA 318
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 54/299 (18%), Positives = 116/299 (38%), Gaps = 58/299 (19%)
Query: 398 IKGHNKPITALALSPDR-GTVFTGSHDGFITRWNAKTGENDRV-------QGAGHGNQIN 449
++GHN +T+LA S + + + S D + W TG++ + +G H Q
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL-TGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 450 GMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIV 509
+ A G + D T++ D+++ V S +DID K+ S +
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDID---------KKASXI 122
Query: 510 ENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTD 569
+G++ D + ++ + + L+ L H V+
Sbjct: 123 ISGSR---------------------------DKTIKVWTIKGQCLATL--LGHNDWVSQ 153
Query: 570 CSFSPSNEY------LVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALV 623
P+ + ++++ + V + + F++ ++ H++ +N + SPD L+
Sbjct: 154 VRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLI 211
Query: 624 ASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWLDNDLLVSVGQDCNTKIWEIAP 682
AS D I +W+LA+ + Q ++ L + N ++ K++ + P
Sbjct: 212 ASAGKDGEIXLWNLAAKKAXYTLS---AQDEVFSLAFSPNRYWLAAATATGIKVFSLDP 267
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 6/125 (4%)
Query: 563 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSAL 622
H V DC+ + Y +++ + + L+ V E + + H + V V ++
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY--QRFVGHKSDVXSVDIDKKASX 121
Query: 623 VASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRL--QWLDND--LLVSVGQDCNTKIW 678
+ SGS D TI +W++ ++ + SQ+ + + D+D ++S G D K W
Sbjct: 122 IISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAW 181
Query: 679 EIAPF 683
+ F
Sbjct: 182 NLNQF 186
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 607 HSAKVNCVAWSPDSALV-ASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWLDND- 664
H+A+VNC++++P S + A+GS D T+ +W L + + +H + +I ++ W ++
Sbjct: 274 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESH-KDEIFQVHWSPHNE 332
Query: 665 -LLVSVGQDCNTKIWEIA 681
+L S G D +W+++
Sbjct: 333 TILASSGTDRRLNVWDLS 350
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 73/175 (41%), Gaps = 17/175 (9%)
Query: 188 IKDIAWSPDNQRMV--VVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRI 245
++D+AW ++ + V + + + T + + +N F P F +
Sbjct: 232 VEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFIL 291
Query: 246 ITGSEDNTIAVFEGPPFKFKM-TKQEHSRFVQAVRYSPSGSH-FASAGFDGKVFLYD--- 300
TGS D T+A+++ K K+ T + H + V +SP AS+G D ++ ++D
Sbjct: 292 ATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351
Query: 301 --GASADLVSELGNP-------AHKGGVYAVAWKPDGTQLL-TASGDKTCKLWDI 345
+ +E G P H + +W P+ ++ + S D ++W +
Sbjct: 352 IGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 14/118 (11%)
Query: 535 LVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVV----L 590
++A G AD V +++L N L H + +SP NE ++AS + + L
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Query: 591 YRVPDFELAHNKE---------WGFHSAKVNCVAWSPDSA-LVASGSLDTTIIIWSLA 638
++ + + A + E G H+AK++ +W+P+ ++ S S D + IW +A
Sbjct: 350 SKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMA 407
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 607 HSAKVNCVAWSPDSALV-ASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWLDND- 664
H+A+VNC++++P S + A+GS D T+ +W L + + +H + +I ++ W ++
Sbjct: 274 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESH-KDEIFQVHWSPHNE 332
Query: 665 -LLVSVGQDCNTKIWEIA 681
+L S G D +W+++
Sbjct: 333 TILASSGTDRRLNVWDLS 350
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 188 IKDIAWSPDNQRMV--VVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRI 245
++D+AW ++ + V + + + T + + +N F P F +
Sbjct: 232 VEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFIL 291
Query: 246 ITGSEDNTIAVFEGPPFKFKM-TKQEHSRFVQAVRYSPSGSH-FASAGFDGKVFLYD 300
TGS D T+A+++ K K+ T + H + V +SP AS+G D ++ ++D
Sbjct: 292 ATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 14/118 (11%)
Query: 535 LVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVV----L 590
++A G AD V +++L N L H + +SP NE ++AS + + L
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Query: 591 YRVPDFELAHNKE---------WGFHSAKVNCVAWSPDSA-LVASGSLDTTIIIWSLA 638
++ + + A + E G H+AK++ +W+P+ ++ S S D IW A
Sbjct: 350 SKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQXA 407
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 7/150 (4%)
Query: 289 SAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK 348
+ G DG++ L+ + V + N A ++AV + ++LT + K+WD +
Sbjct: 165 TVGEDGRINLFRADHKEAVRTIDN-ADSSTLHAVTFL-RTPEILTVNSIGQLKIWDFRQQ 222
Query: 349 SVVSEFIMGNQVEDQQVSCL----WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKP 404
I+ + + C+ Q + T G +S DV + P+ ++K H
Sbjct: 223 GNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAE 282
Query: 405 ITALALSPDRGT-VFTGSHDGFITRWNAKT 433
+ + P +FT S DG + W+A T
Sbjct: 283 MWEVHFHPSNPEHLFTCSEDGSLWHWDAST 312
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 62/306 (20%), Positives = 119/306 (38%), Gaps = 46/306 (15%)
Query: 70 RNIENPAISDIYTEH-SCAVNVAKYSPS-GFYIASGDISGKVRIWDT-VNKEHILKNEFH 126
++ N +SD + H S V + SP G IAS V++W+ ++E ++
Sbjct: 40 KDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWN 99
Query: 127 PIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVN----KEHILKNEFH 182
+ G+L S+ +G +A G +R++D + + L +E
Sbjct: 100 KLCTLNDSKGSLYSV----KFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK 155
Query: 183 PIGGPIKD-------IAWSPDN-----------QRMVVVGEGRERFGHVFMSETGTSVGE 224
+ P + ++W P ++ ++ G++ HV +
Sbjct: 156 VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV--------AAK 207
Query: 225 ISGQSKPINSCDFKPS--RPFRII-TGSEDNTIAVFE----GPPFKFKMTKQEHSRFVQA 277
+ G I S + PS R +++I TG +D I +F+ P + + + F +
Sbjct: 208 LPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNS 267
Query: 278 VRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD 337
+ + + K L +L+SE + H G V++V+W GT L +A D
Sbjct: 268 ADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD--HNGEVWSVSWNLTGTILSSAGDD 325
Query: 338 KTCKLW 343
+LW
Sbjct: 326 GKVRLW 331
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 271 HSRFVQAVRYSPSGSHFASAGFDG--KVFLYDGASADLVSELGNPAHKGGVYAVAW-KPD 327
H V V Y G H A+ D KVF D +++ AH + A+ W P+
Sbjct: 8 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE 67
Query: 328 -GTQLLTASGDKTCKLWD 344
G + +AS DKT KLW+
Sbjct: 68 YGRIIASASYDKTVKLWE 85
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 62/306 (20%), Positives = 119/306 (38%), Gaps = 46/306 (15%)
Query: 70 RNIENPAISDIYTEH-SCAVNVAKYSPS-GFYIASGDISGKVRIWDT-VNKEHILKNEFH 126
++ N +SD + H S V + SP G IAS V++W+ ++E ++
Sbjct: 42 KDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWN 101
Query: 127 PIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVN----KEHILKNEFH 182
+ G+L S+ +G +A G +R++D + + L +E
Sbjct: 102 KLCTLNDSKGSLYSV----KFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK 157
Query: 183 PIGGPIKD-------IAWSPDN-----------QRMVVVGEGRERFGHVFMSETGTSVGE 224
+ P + ++W P ++ ++ G++ HV +
Sbjct: 158 VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV--------AAK 209
Query: 225 ISGQSKPINSCDFKPS--RPFRII-TGSEDNTIAVFE----GPPFKFKMTKQEHSRFVQA 277
+ G I S + PS R +++I TG +D I +F+ P + + + F +
Sbjct: 210 LPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNS 269
Query: 278 VRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD 337
+ + + K L +L+SE + H G V++V+W GT L +A D
Sbjct: 270 ADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD--HNGEVWSVSWNLTGTILSSAGDD 327
Query: 338 KTCKLW 343
+LW
Sbjct: 328 GKVRLW 333
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 271 HSRFVQAVRYSPSGSHFASAGFDG--KVFLYDGASADLVSELGNPAHKGGVYAVAW-KPD 327
H V V Y G H A+ D KVF D +++ AH + A+ W P+
Sbjct: 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE 69
Query: 328 -GTQLLTASGDKTCKLWD 344
G + +AS DKT KLW+
Sbjct: 70 YGRIIASASYDKTVKLWE 87
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 245 IITGSEDNTIAVFE----GPPFKFKMTKQ--EHSRFVQAVRYSPSGSHFA----SAGFDG 294
I TG + T+ + E P + F+ +S +++V++SP GS A S F G
Sbjct: 200 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSF-G 258
Query: 295 KVFLYDGASADLV-----------SELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLW 343
+ LY+ + + + LG AH V ++++ G L +A D + W
Sbjct: 259 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 318
Query: 344 DIETKSVVSEFIM 356
D++TK ++ M
Sbjct: 319 DVKTKERITTLNM 331
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 84 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH 126
HS V ++ SG + S GK+R WD KE I H
Sbjct: 290 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 332
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 245 IITGSEDNTIAVFE----GPPFKFKMTKQ--EHSRFVQAVRYSPSGSHFA----SAGFDG 294
I TG + T+ + E P + F+ +S +++V++SP GS A S F G
Sbjct: 210 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSF-G 268
Query: 295 KVFLYDGASADLV-----------SELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLW 343
+ LY+ + + + LG AH V ++++ G L +A D + W
Sbjct: 269 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 328
Query: 344 DIETKSVVSEFIM 356
D++TK ++ M
Sbjct: 329 DVKTKERITTLNM 341
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 84 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH 126
HS V ++ SG + S GK+R WD KE I H
Sbjct: 300 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 342
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 66/327 (20%), Positives = 127/327 (38%), Gaps = 49/327 (14%)
Query: 70 RNIENPAISDIYTEH-SCAVNVAKYSPS-GFYIASGDISGKVRIWDT-VNKEHILKNEFH 126
++ N +SD + H S V + SP G IAS V++W+ ++E ++
Sbjct: 42 KDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWN 101
Query: 127 PIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVN----KEHILKNEFH 182
+ G+L S+ +G +A G +R++D + + L +E
Sbjct: 102 KLCTLNDSKGSLYSV----KFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEXK 157
Query: 183 PIGGPIKD-------IAWSPDN-----------QRMVVVGEGRERFGHVFMSETGTSVGE 224
+ P + ++W P ++ ++ G++ HV +
Sbjct: 158 VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV--------AAK 209
Query: 225 ISGQSKPINSCDFKPS--RPFRII-TGSEDNTIAVFE----GPPFKFKMTKQEHSRFVQA 277
+ G I S + PS R +++I TG +D I +F+ P + + + F +
Sbjct: 210 LPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNXFDNS 269
Query: 278 VRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD 337
+ + + K L +L+SE + H G V++V+W GT L +A D
Sbjct: 270 ADVDXDAQGRSDSNTEEKAELQSNLQVELLSEHDD--HNGEVWSVSWNLTGTILSSAGDD 327
Query: 338 KTCKLWDIETKSVVSEFIMGNQVEDQQ 364
+LW + +EF + + QQ
Sbjct: 328 GKVRLW---KATYSNEFKCXSVITAQQ 351
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 271 HSRFVQAVRYSPSGSHFASAGFDG--KVFLYDGASADLVSELGNPAHKGGVYAVAW-KPD 327
H V V Y G H A+ D KVF D +++ AH + A+ W P+
Sbjct: 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE 69
Query: 328 -GTQLLTASGDKTCKLWD 344
G + +AS DKT KLW+
Sbjct: 70 YGRIIASASYDKTVKLWE 87
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 84/223 (37%), Gaps = 38/223 (17%)
Query: 152 IGFYIASGDISGKVRIWDTVNKE--HILKNEFHPIGGPIKDIAWSPDNQR-MVVVGEGRE 208
G +AS GKV IW N I + H + + W+P M++V
Sbjct: 66 FGTILASCSYDGKVMIWKEENGRWSQIAVHAVH--SASVNSVQWAPHEYGPMLLVASSDG 123
Query: 209 RFGHVFMSETGT-SVGEISGQSKPINSCDFKP--------------SRPFRIITGSEDNT 253
+ V E GT S I + +NS + P SR F +TG DN
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF--VTGGADNL 181
Query: 254 IAVF----EGPPFKFKMTKQEHSRFVQAVRYSPS---GSHFASAGFDGKVFLYDGASAD- 305
+ ++ + + + T + HS +V+ V +SP+ S+ AS D ++ +
Sbjct: 182 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG 241
Query: 306 -----LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLW 343
L+ E P ++ +W G L + GD LW
Sbjct: 242 PWKKTLLKEEKFP---DVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 21/162 (12%)
Query: 153 GFYIASGDISGKVRIWDTVNK-EHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFG 211
G YI +G GK+ +D N E++ + H I D+ +SPD + R
Sbjct: 187 GKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE--KSISDMQFSPDLTYFIT----SSRDT 240
Query: 212 HVFMSETGT-SVGEISGQSKPINSCDFKPSRPFRIITGSED----NTIAVFEG---PPFK 263
+ F+ + T V + P+N+ P + F I+ G ++ T + EG F
Sbjct: 241 NSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFY 300
Query: 264 FKMTKQEHSRF------VQAVRYSPSGSHFASAGFDGKVFLY 299
K+ ++E R + V SP G+ +AS G DG + L+
Sbjct: 301 HKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLH 342
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 74/369 (20%), Positives = 131/369 (35%), Gaps = 82/369 (22%)
Query: 82 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSL 141
T H + KY+ G + S +W ++N E + GTL
Sbjct: 29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERL---------------GTLDGH 73
Query: 142 T-SIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRM 200
T +I +I V Y +G +++WD N + + + P+ P+K + +SP
Sbjct: 74 TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPV--PVKRVEFSPCGNYF 130
Query: 201 VVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIIT--GSEDNTIAVFE 258
+ + +V + ++ EI S +IIT G + T+A
Sbjct: 131 LAI------LDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA--- 181
Query: 259 GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYD-GASADLVSELGNPAHKG 317
+S G + + DGK+ YD + + V + H+
Sbjct: 182 --------------------GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSI--DLHEK 219
Query: 318 GVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVS-----------------EFIM---G 357
+ + + PD T +T+S D L D+ T V+ EFI+ G
Sbjct: 220 SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGG 279
Query: 358 NQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTV 417
+ +D + +G + F I ++GH P+ +A+SP +
Sbjct: 280 QEAKDVTTTSANEGKFEARFYHKIF---------EEEIGRVQGHFGPLNTVAISPQGTSY 330
Query: 418 FTGSHDGFI 426
+G DGFI
Sbjct: 331 ASGGEDGFI 339
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 85/218 (38%), Gaps = 23/218 (10%)
Query: 224 EISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPS 283
+++G +P+ + + + S+D++ +V+ + T H+ + ++
Sbjct: 27 KLTGHERPLTQVKYNKEGDL-LFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCF 85
Query: 284 GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCK-- 341
+ + D + L+D ++ V+ +P V V + P G L A D K
Sbjct: 86 TKYCVTGSADYSIKLWDVSNGQCVATWKSPV---PVKRVEFSPCGNYFL-AILDNVMKNP 141
Query: 342 ----LWDIETKSVVSEF----------IMGNQVEDQQVSCLW--QGDYLLTVSLSGFISY 385
+++IE S E I+ ++ D W +G Y++ G IS
Sbjct: 142 GSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISK 201
Query: 386 LDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHD 423
DV+N + I H K I+ + SPD T S D
Sbjct: 202 YDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD 239
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 84/223 (37%), Gaps = 38/223 (17%)
Query: 152 IGFYIASGDISGKVRIWDTVNKE--HILKNEFHPIGGPIKDIAWSPDNQR-MVVVGEGRE 208
G +AS GKV IW N I + H + + W+P +++V
Sbjct: 66 FGTILASCSYDGKVLIWKEENGRWSQIAVHAVH--SASVNSVQWAPHEYGPLLLVASSDG 123
Query: 209 RFGHVFMSETGT-SVGEISGQSKPINSCDFKP--------------SRPFRIITGSEDNT 253
+ V E GT S I + +NS + P SR F +TG DN
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF--VTGGADNL 181
Query: 254 IAVF----EGPPFKFKMTKQEHSRFVQAVRYSPS---GSHFASAGFDGKVFLYDGASAD- 305
+ ++ + + + T + HS +V+ V +SP+ S+ AS D ++ +
Sbjct: 182 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 241
Query: 306 -----LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLW 343
L+ E P ++ +W G L + GD LW
Sbjct: 242 PWKKTLLKEEKFP---DVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 84/223 (37%), Gaps = 38/223 (17%)
Query: 152 IGFYIASGDISGKVRIWDTVNKE--HILKNEFHPIGGPIKDIAWSPDNQ-RMVVVGEGRE 208
G +AS GKV IW N I + H + + W+P +++V
Sbjct: 66 FGTILASCSYDGKVLIWKEENGRWSQIAVHAVH--SASVNSVQWAPHEYGPLLLVASSDG 123
Query: 209 RFGHVFMSETGT-SVGEISGQSKPINSCDFKP--------------SRPFRIITGSEDNT 253
+ V E GT S I + +NS + P SR F +TG DN
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF--VTGGADNL 181
Query: 254 IAVF----EGPPFKFKMTKQEHSRFVQAVRYSPS---GSHFASAGFDGKVFLYDGASAD- 305
+ ++ + + + T + HS +V+ V +SP+ S+ AS D ++ +
Sbjct: 182 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 241
Query: 306 -----LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLW 343
L+ E P ++ +W G L + GD LW
Sbjct: 242 PWKKTLLKEEKFP---DVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 84/223 (37%), Gaps = 38/223 (17%)
Query: 152 IGFYIASGDISGKVRIWDTVNKE--HILKNEFHPIGGPIKDIAWSPDNQR-MVVVGEGRE 208
G +AS GKV IW N I + H + + W+P +++V
Sbjct: 68 FGTILASCSYDGKVLIWKEENGRWSQIAVHAVH--SASVNSVQWAPHEYGPLLLVASSDG 125
Query: 209 RFGHVFMSETGT-SVGEISGQSKPINSCDFKP--------------SRPFRIITGSEDNT 253
+ V E GT S I + +NS + P SR F +TG DN
Sbjct: 126 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF--VTGGADNL 183
Query: 254 IAVF----EGPPFKFKMTKQEHSRFVQAVRYSPS---GSHFASAGFDGKVFLYDGASAD- 305
+ ++ + + + T + HS +V+ V +SP+ S+ AS D ++ +
Sbjct: 184 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 243
Query: 306 -----LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLW 343
L+ E P ++ +W G L + GD LW
Sbjct: 244 PWKKTLLKEEKFP---DVLWRASWSLSGNVLALSGGDNKVTLW 283
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 19/162 (11%)
Query: 280 YSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKT 339
+ GSH A DG FL++ D S++ A V + L T GD
Sbjct: 61 FEKVGSHLYKARLDGHDFLFNTIIRD-GSKMLKRADYTAVDTAKLQMRRFILGTTEGD-- 117
Query: 340 CKLWDIETKSVVSEFIMGNQVEDQQVSCLWQ------GDYLLTVSLSGFISYLDVNNPST 393
K + S F + +++ VS + + G+ L++ S + V + S
Sbjct: 118 -------IKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 170
Query: 394 PIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNAKTG 434
P R + GH +T +A+ DRG V + S DG I W TG
Sbjct: 171 P-RTLIGHRATVTDIAI-IDRGRNVLSASLDGTIRLWECGTG 210
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 552 NKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKV 611
N +L + + H+ +T F PS E L++S ++ ++ V D ++ + H A V
Sbjct: 124 NFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG--SNPRTLIGHRATV 181
Query: 612 NCVAWSPDSALVASGSLDTTIIIWSLAS 639
+A V S SLD TI +W +
Sbjct: 182 TDIAIIDRGRNVLSASLDGTIRLWECGT 209
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 19/162 (11%)
Query: 280 YSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKT 339
+ GSH A DG FL++ D S++ A V + L T GD
Sbjct: 64 FEKVGSHLYKARLDGHDFLFNTIIRD-GSKMLKRADYTAVDTAKLQMRRFILGTTEGD-- 120
Query: 340 CKLWDIETKSVVSEFIMGNQVEDQQVSCLWQ------GDYLLTVSLSGFISYLDVNNPST 393
K + S F + +++ VS + + G+ L++ S + V + S
Sbjct: 121 -------IKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 173
Query: 394 PIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNAKTG 434
P R + GH +T +A+ DRG V + S DG I W TG
Sbjct: 174 P-RTLIGHRATVTDIAI-IDRGRNVLSASLDGTIRLWECGTG 213
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 552 NKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKV 611
N +L + + H+ +T F PS E L++S ++ ++ V D ++ + H A V
Sbjct: 127 NFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG--SNPRTLIGHRATV 184
Query: 612 NCVAWSPDSALVASGSLDTTIIIWSLAS 639
+A V S SLD TI +W +
Sbjct: 185 TDIAIIDRGRNVLSASLDGTIRLWECGT 212
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/261 (19%), Positives = 92/261 (35%), Gaps = 26/261 (9%)
Query: 187 PIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRII 246
PI AW+ D ++ + E + V E+ + + D+ P +
Sbjct: 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 69
Query: 247 TGSEDNT-IAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKV--FLYDGAS 303
G++ N + +G +K + +R + VR++P+ FA G +V Y
Sbjct: 70 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFA-VGSGSRVISICYFEQE 128
Query: 304 AD--LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVV---------S 352
D + + P + V ++ W P+ L S D C+++ K V S
Sbjct: 129 NDWWVCKHIKKPI-RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGS 187
Query: 353 EFIMGNQVEDQQVSCLW--------QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKP 404
+ G + + SC W G + VS + D + + + P
Sbjct: 188 KMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK-KMAVATLASETLP 246
Query: 405 ITALALSPDRGTVFTGSHDGF 425
+ A+ + V G HD F
Sbjct: 247 LLAVTFITESSLVAAG-HDCF 266
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 42/211 (19%), Positives = 80/211 (37%), Gaps = 21/211 (9%)
Query: 164 KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVG 223
+V I++ + + +E G + + W+PD+ R+V G R + T
Sbjct: 31 EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL 90
Query: 224 EISGQSKPINSCDFKPS-RPFRIITGSEDNTIAVFEGPP--FKFKMTKQEHSRFVQAVRY 280
I ++ + P+ + F + +GS +I FE + K K+ V ++ +
Sbjct: 91 VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW 150
Query: 281 SPSGSHFASAGFDGKVFLYDGASADLVSELGNP-----------------AHKGGVYAVA 323
P+ A+ D K ++ A V E P + G V+ V
Sbjct: 151 HPNSVLLAAGSCDFKCRIFS-AYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC 209
Query: 324 WKPDGTQLLTASGDKTCKLWDIETKSVVSEF 354
+ +G+++ S D T L D + K V+
Sbjct: 210 FSANGSRVAWVSHDSTVCLADADKKMAVATL 240
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 5/159 (3%)
Query: 523 EPSSI-SLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL-DHLGPVTDCSFSPSNEYLV 580
EP S + + + +A+ + +VHIYE + EL +H G VT ++P + +V
Sbjct: 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 68
Query: 581 ASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASP 640
R ++ + + CV W+P+ A GS I I
Sbjct: 69 TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE 128
Query: 641 AKHIIIKNAHP--QSQITRLQWLDNDLLVSVGQDCNTKI 677
+ K+ +S + L W N +L++ G C+ K
Sbjct: 129 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS-CDFKC 166
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 50/261 (19%), Positives = 92/261 (35%), Gaps = 26/261 (9%)
Query: 187 PIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRII 246
PI AW+ D ++ + E + V E+ + + D+ P +
Sbjct: 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVT 69
Query: 247 TGSEDNT-IAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKV--FLYDGAS 303
G++ N + +G +K + +R + VR++P+ FA G +V Y
Sbjct: 70 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFA-VGSGSRVISICYFEQE 128
Query: 304 AD--LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVV---------S 352
D + + P + V ++ W P+ L S D C+++ K V S
Sbjct: 129 NDWWVCKHIKKPI-RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGS 187
Query: 353 EFIMGNQVEDQQVSCLW--------QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKP 404
+ G + + SC W G + VS + D + + + P
Sbjct: 188 KMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK-KMAVATLASETLP 246
Query: 405 ITALALSPDRGTVFTGSHDGF 425
+ A+ + V G HD F
Sbjct: 247 LLAVTFITESSLVAAG-HDCF 266
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 80/211 (37%), Gaps = 21/211 (9%)
Query: 164 KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVG 223
+V I++ + + +E G + I W+PD+ R+V G R + T
Sbjct: 31 EVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL 90
Query: 224 EISGQSKPINSCDFKPS-RPFRIITGSEDNTIAVFEGPP--FKFKMTKQEHSRFVQAVRY 280
I ++ + P+ + F + +GS +I FE + K K+ V ++ +
Sbjct: 91 VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW 150
Query: 281 SPSGSHFASAGFDGKVFLYDGASADLVSELGNP-----------------AHKGGVYAVA 323
P+ A+ D K ++ A V E P + G V+ V
Sbjct: 151 HPNSVLLAAGSCDFKCRIFS-AYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC 209
Query: 324 WKPDGTQLLTASGDKTCKLWDIETKSVVSEF 354
+ +G+++ S D T L D + K V+
Sbjct: 210 FSANGSRVAWVSHDSTVCLADADKKMAVATL 240
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 5/159 (3%)
Query: 523 EPSSI-SLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL-DHLGPVTDCSFSPSNEYLV 580
EP S + + + +A+ + +VHIYE + EL +H G VT ++P + +V
Sbjct: 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIV 68
Query: 581 ASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASP 640
R ++ + + CV W+P+ A GS I I
Sbjct: 69 TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE 128
Query: 641 AKHIIIKNAHP--QSQITRLQWLDNDLLVSVGQDCNTKI 677
+ K+ +S + L W N +L++ G C+ K
Sbjct: 129 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS-CDFKC 166
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 83/223 (37%), Gaps = 38/223 (17%)
Query: 152 IGFYIASGDISGKVRIWDTVNKE--HILKNEFHPIGGPIKDIAWSPDNQR-MVVVGEGRE 208
G +AS GKV IW N I + H + + W+P ++V
Sbjct: 66 FGTILASCSYDGKVXIWKEENGRWSQIAVHAVH--SASVNSVQWAPHEYGPXLLVASSDG 123
Query: 209 RFGHVFMSETGT-SVGEISGQSKPINSCDFKP--------------SRPFRIITGSEDNT 253
+ V E GT S I + +NS + P SR F +TG DN
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF--VTGGADNL 181
Query: 254 IAVF----EGPPFKFKMTKQEHSRFVQAVRYSPS---GSHFASAGFDGKVFLYDGASAD- 305
+ ++ + + + T + HS +V+ V +SP+ S+ AS D ++ +
Sbjct: 182 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQG 241
Query: 306 -----LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLW 343
L+ E P ++ +W G L + GD LW
Sbjct: 242 PWKKTLLKEEKFP---DVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 269 QEHSRFVQAVRYSPSGSHFASAGFDG---KVFLYDGASADLVSELGNPAHKGGVYAVAWK 325
+ H+ V+ VR + G A+ DG +VF D LV E + + + W
Sbjct: 176 KAHANPVKMVRLNRKGDMVATCSQDGTLIRVFQTDNGV--LVREFRRGLDRTSIIDMRWS 233
Query: 326 PDGTQLLTASGDKTCKLWDI 345
PDG++L S T ++++
Sbjct: 234 PDGSKLAVVSDKWTLHVFEV 253
>pdb|2WAD|A Chain A, Penicillin-Binding Protein 2b (Pbp-2b) From Streptococcus
Pneumoniae (Strain 5204)
pdb|2WAD|B Chain B, Penicillin-Binding Protein 2b (Pbp-2b) From Streptococcus
Pneumoniae (Strain 5204)
pdb|2WAD|C Chain C, Penicillin-Binding Protein 2b (Pbp-2b) From Streptococcus
Pneumoniae (Strain 5204)
Length = 680
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 308 SELGNPAHK--GGVYAVAWKPDGTQLLTASG----DKTCKLWDIETKSVVSEFIMGNQVE 361
SELGN K GVYAVA P +L+ SG KT +L +V + F+ G+ V+
Sbjct: 330 SELGNGGAKYSEGVYAVALNPQTGAVLSMSGLKHDLKTGELTPDSLGTVTNVFVPGSVVK 389
Query: 362 DQQVSCLWQGDYL 374
+S W+ L
Sbjct: 390 AATISSGWENGVL 402
>pdb|2WAE|A Chain A, Penicillin-Binding Protein 2b (Pbp-2b) From Streptococcus
Pneumoniae (Strain 5204)
Length = 680
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 308 SELGNPAHK--GGVYAVAWKPDGTQLLTASG----DKTCKLWDIETKSVVSEFIMGNQVE 361
SELGN K GVYAVA P +L+ SG KT +L +V + F+ G+ V+
Sbjct: 330 SELGNGGAKYSEGVYAVALNPQTGAVLSMSGLKHDLKTGELTPDSLGTVTNVFVPGSVVK 389
Query: 362 DQQVSCLWQGDYL 374
+S W+ L
Sbjct: 390 AATISSGWENGVL 402
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 330 QLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVN 389
+ LTAS DKT KLW + V+ F + + ++ + G + ++ S G I +D +
Sbjct: 157 KFLTASADKTIKLW--QNDKVIKTFSGIHNDVVRHLAVVDDG-HFISCSNDGLIKLVDXH 213
Query: 390 NPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRV 439
+R +GH + + L P+ G + + D + W+ + G +V
Sbjct: 214 TGDV-LRTYEGHESFVYCIKLLPN-GDIVSCGEDRTVRIWSKENGSLKQV 261
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 30/65 (46%)
Query: 404 PITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGI 463
P+ ++ SP ++T DG I+ WN +T + + + + + + + +L
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATS 312
Query: 464 DDTIK 468
DDT K
Sbjct: 313 DDTFK 317
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 30/65 (46%)
Query: 404 PITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGI 463
P+ ++ SP ++T DG I+ WN +T + + + + + + + +L
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATS 312
Query: 464 DDTIK 468
DDT K
Sbjct: 313 DDTFK 317
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 30/65 (46%)
Query: 404 PITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGI 463
P+ ++ SP ++T DG I+ WN +T + + + + + + + +L
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATS 312
Query: 464 DDTIK 468
DDT K
Sbjct: 313 DDTFK 317
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 30/65 (46%)
Query: 404 PITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGI 463
P+ ++ SP ++T DG I+ WN +T + + + + + + + +L
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATS 312
Query: 464 DDTIK 468
DDT K
Sbjct: 313 DDTFK 317
>pdb|1RI6|A Chain A, Structure Of A Putative Isomerase From E. Coli
Length = 343
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 26/171 (15%)
Query: 402 NKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHG--------------NQ 447
N+ + AL DR +FT S DG + + E V+GAG N+
Sbjct: 140 NRTLWVPALKQDRICLFTVSDDGHLVAQDP--AEVTTVEGAGPRHMVFHPNEQYAYCVNE 197
Query: 448 INGMKATGELLYTCGIDDTIKQVDLSSNAYS----GPEVKLGSQPRGLDIDENTLVTVTV 503
+N EL G + ++ +D+ +S ++ + R L + T +TV
Sbjct: 198 LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV 257
Query: 504 KQISIVENGAKVSS---LPIDYEPSSISLDHE-HGLVAVGGADSKVHIYEL 550
S+ E+G+ +S P + +P ++DH L+A G + +YE+
Sbjct: 258 --FSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI 306
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 370 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGT------VFTGSHD 423
Q YL T G + ++ P P+ +KGH + I A+ G + TGS D
Sbjct: 79 QQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRD 138
Query: 424 GFITRWNAKTGEN 436
G + W+ + ++
Sbjct: 139 GTVKVWDPRQKDD 151
>pdb|1RP5|A Chain A, Pbp2x From Streptococcus Pneumoniae Strain 5259 With
Reduced Susceptibility To Beta-Lactam Antibiotics
pdb|1RP5|B Chain B, Pbp2x From Streptococcus Pneumoniae Strain 5259 With
Reduced Susceptibility To Beta-Lactam Antibiotics
Length = 702
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 10/114 (8%)
Query: 172 NKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKP 231
N + + K++ +G P+ A S MV+VG +G ++ TG + + GQ+
Sbjct: 439 NDQSVRKSQKEIVGNPVSKEAASVTRDHMVMVGTD-PTYGTMYNHSTGKATVNVPGQNVA 497
Query: 232 INS--CDFKPSRPFRIITGSEDNTIAVF-----EGPPFKFKMTKQ--EHSRFVQ 276
+ S + + +TGS +N +V E P F +T Q EH +Q
Sbjct: 498 LKSGTAEIADEKNGGYLTGSTNNIFSVVSMHPAENPDFILYVTVQQPEHYSGIQ 551
>pdb|1AOF|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reduced Form
pdb|1AOF|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reduced Form
pdb|1AOM|A Chain A, Substrate And Product Bound To Cytochrome Cd1 Nitrite
Reductase
pdb|1AOM|B Chain B, Substrate And Product Bound To Cytochrome Cd1 Nitrite
Reductase
pdb|1AOQ|A Chain A, Cytochrome Cd1 Nitrite Reductase With Substrate And
Product Bound
pdb|1AOQ|B Chain B, Cytochrome Cd1 Nitrite Reductase With Substrate And
Product Bound
pdb|1QKS|A Chain A, Cytochrome Cd1 Nitrite Reductase, Oxidised Form
pdb|1QKS|B Chain B, Cytochrome Cd1 Nitrite Reductase, Oxidised Form
Length = 567
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 424 GFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDL-SSNAYSGPEV 482
G I + T E V G+ I+ + A+G L+ G D + +DL + E+
Sbjct: 177 GQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI 236
Query: 483 KLGSQPRGLD 492
K+GS+ R ++
Sbjct: 237 KIGSEARSIE 246
>pdb|1E2R|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reduced And Cyanide
Bound
pdb|1E2R|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reduced And Cyanide
Bound
Length = 567
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 424 GFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDL-SSNAYSGPEV 482
G I + T E V G+ I+ + A+G L+ G D + +DL + E+
Sbjct: 177 GQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI 236
Query: 483 KLGSQPRGLD 492
K+GS+ R ++
Sbjct: 237 KIGSEARSIE 246
>pdb|1GQ1|A Chain A, Cytochrome Cd1 Nitrite Reductase, Y25s Mutant, Oxidised
Form
pdb|1GQ1|B Chain B, Cytochrome Cd1 Nitrite Reductase, Y25s Mutant, Oxidised
Form
Length = 567
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 424 GFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDL-SSNAYSGPEV 482
G I + T E V G+ I+ + A+G L+ G D + +DL + E+
Sbjct: 177 GQIALIDGATYEIKSVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI 236
Query: 483 KLGSQPRGLD 492
K+GS+ R ++
Sbjct: 237 KIGSEARSIE 246
>pdb|1DY7|A Chain A, Cytochrome Cd1 Nitrite Reductase, Co Complex
pdb|1DY7|B Chain B, Cytochrome Cd1 Nitrite Reductase, Co Complex
pdb|1HJ3|A Chain A, Cytochrome Cd1 Nitrite Reductase, Dioxygen Complex
pdb|1HJ3|B Chain B, Cytochrome Cd1 Nitrite Reductase, Dioxygen Complex
pdb|1HJ4|A Chain A, Cytochrome Cd1 Nitrite Reductase, X-Ray Reduced Dioxygen
Complex
pdb|1HJ4|B Chain B, Cytochrome Cd1 Nitrite Reductase, X-Ray Reduced Dioxygen
Complex
pdb|1HJ5|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reoxidised Enzyme
pdb|1HJ5|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reoxidised Enzyme
pdb|1H9X|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reduced Form
pdb|1H9X|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reduced Form
pdb|1H9Y|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reduced Form Complexed
To Cn
pdb|1H9Y|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reduced Form Complexed
To Cn
pdb|1HCM|A Chain A, Cytochrome Cd1 Nitrite Reductase, Oxidised From From
Tetragonal Crystals
pdb|1HCM|B Chain B, Cytochrome Cd1 Nitrite Reductase, Oxidised From From
Tetragonal Crystals
Length = 567
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 424 GFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDL-SSNAYSGPEV 482
G I + T E V G+ I+ + A+G L+ G D + +DL + E+
Sbjct: 177 GQIALIDGATYEIKSVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI 236
Query: 483 KLGSQPRGLD 492
K+GS+ R ++
Sbjct: 237 KIGSEARSIE 246
>pdb|3LUT|A Chain A, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 367
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 15/75 (20%)
Query: 606 FHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWLDNDL 665
FH V + WSP + + SG D+ I +S AS + QWL + +
Sbjct: 233 FHKIGVGAMTWSPLACGIVSGKYDSGIPPYSRAS---------------LKGYQWLKDKI 277
Query: 666 LVSVGQDCNTKIWEI 680
L G+ K+ E+
Sbjct: 278 LSEEGRRQQAKLKEL 292
>pdb|2QHR|L Chain L, Crystal Structure Of The 13f6-1-2 Fab Fragment Bound To
Its Ebola Virus Glycoprotein Peptide Epitope
Length = 218
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 14/113 (12%)
Query: 420 GSH---DGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNA 476
GSH DG R++ + DR I+ ++ E +Y CG+ DTIK+ +
Sbjct: 54 GSHSTGDGIPDRFSGSSSGADRYLS------ISNIQPEDEAIYICGVGDTIKEQFVYVFG 107
Query: 477 YSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISL 529
G +V + QP+ TL + EN A + L ++ PS +++
Sbjct: 108 -GGTKVTVLGQPKSTP----TLTVFPPSSEELKENKATLVCLISNFSPSGVTV 155
>pdb|3S96|B Chain B, Crystal Structure Of 3b5h10
pdb|3S96|D Chain D, Crystal Structure Of 3b5h10
Length = 218
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 14/113 (12%)
Query: 420 GSH---DGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNA 476
GSH DG R++ + DR I+ ++ E +Y CG+ DTIK+ +
Sbjct: 54 GSHSTGDGIPDRFSGSSSGADRYLS------ISNIQPEDEAIYICGVGDTIKEQFVYVFG 107
Query: 477 YSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISL 529
G +V + QP+ TL + EN A + L ++ PS +++
Sbjct: 108 -GGTKVTVLGQPKSTP----TLTVFPPSSEELKENKATLVCLISNFSPSGVTV 155
>pdb|2WAF|A Chain A, Penicillin-Binding Protein 2b (Pbp-2b) From Streptococcus
Pneumoniae (Strain R6)
Length = 682
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 309 ELGNPAHKGGVYAVAWKPDGTQLLTASGD----KTCKLWDIETKSVVSEFIMGNQVEDQQ 364
E G + GVYAVA P +L+ SG KT +L +V + F+ G+ V+
Sbjct: 333 ENGGAKYSEGVYAVALNPKTGAVLSMSGIKHDLKTGELTPDSLGTVTNVFVPGSVVKAAT 392
Query: 365 VSCLWQGDYL 374
+S W+ L
Sbjct: 393 ISSGWENGVL 402
>pdb|4DCQ|A Chain A, Crystal Structure Of The Fab Fragment Of 3b5h10, An
Antibody-Specific For Extended Polyglutamine Repeats
(Orthorhombic Form)
Length = 218
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 437 DRVQGAGHGNQ----INGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLD 492
DR G+ G I+ ++ E +Y CG+ DTIK+ + G +V + QP+
Sbjct: 63 DRFSGSSSGADRYLLISNIQPEDEAIYICGVGDTIKEQFVYVFG-GGTKVTVLGQPKSTP 121
Query: 493 IDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISL 529
TL + EN A + L ++ PS +++
Sbjct: 122 ----TLTVFPPSSEELKENKATLVCLISNFSPSGVTV 154
>pdb|1ZSX|A Chain A, Crystal Structure Of Human Potassium Channel Kv
Beta-Subunit (Kcnab2)
Length = 347
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 15/75 (20%)
Query: 606 FHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWLDNDL 665
FH V + WSP + + SG D+ I +S AS + QWL + +
Sbjct: 220 FHKIGVGAMTWSPLACGIVSGKYDSGIPPYSRASLKGY---------------QWLKDKI 264
Query: 666 LVSVGQDCNTKIWEI 680
L G+ K+ E+
Sbjct: 265 LSEEGRRQQAKLKEL 279
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 29/70 (41%)
Query: 566 PVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVAS 625
P + +F+ V + A +V LY H + + H V CV W+P S + +
Sbjct: 13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVT 72
Query: 626 GSLDTTIIIW 635
S D ++
Sbjct: 73 CSQDRNAYVY 82
>pdb|4H5I|A Chain A, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P1 Form)
pdb|4H5I|B Chain B, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P1 Form)
pdb|4H5J|A Chain A, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P64 Form)
pdb|4H5J|B Chain B, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P64 Form)
Length = 365
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 22 KGKNFLYT-----NGNKYIFATLPRTQRGQPIVLGG-DPKGK-NFLYTNGNSVIIRNIEN 74
KGK + T +GN + + T R + I D KG+ L +N NS+ + +++
Sbjct: 241 KGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSXDVDXKGELAVLASNDNSIALVKLKD 300
Query: 75 PAISDIYTE-HSCAVNVAKYSPSGFYIASGDISGKVRI 111
+ S I+ + HS A+ SP Y+AS + + I
Sbjct: 301 LSXSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHI 338
>pdb|3EB3|A Chain A, Voltage-Dependent K+ Channel Beta Subunit (W121a) In
Complex With Cortisone
Length = 327
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 15/75 (20%)
Query: 606 FHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWLDNDL 665
FH V + WSP + + SG D+ I +S AS + QWL + +
Sbjct: 199 FHKIGVGAMTWSPLACGIVSGKYDSGIPPYSRAS---------------LKGYQWLKDKI 243
Query: 666 LVSVGQDCNTKIWEI 680
L G+ K+ E+
Sbjct: 244 LSEEGRRQQAKLKEL 258
>pdb|1EXB|A Chain A, Structure Of The Cytoplasmic Beta Subunit-T1 Assembly Of
Voltage-Dependent K Channels
Length = 332
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 15/75 (20%)
Query: 606 FHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWLDNDL 665
FH V + WSP + + SG D+ I +S AS + QWL + +
Sbjct: 198 FHKIGVGAMTWSPLACGIVSGKYDSGIPPYSRAS---------------LKGYQWLKDKI 242
Query: 666 LVSVGQDCNTKIWEI 680
L G+ K+ E+
Sbjct: 243 LSEEGRRQQAKLKEL 257
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 8/154 (5%)
Query: 482 VKLGSQPRGLDIDENTLV-TVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGG 540
+K+ +PR L I LV +VTV + ++E+ V+ Y + I D E + +
Sbjct: 169 IKIRREPRHLAISNMPLVKSVTVAE-GLIEDHFDVTVKMSTYLVAFIISDFE-SVSKITK 226
Query: 541 ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAH 600
+ KV +Y + +K LD VT F +Y K L +PDF+
Sbjct: 227 SGVKVSVYAVPDKINQADYALD--AAVTLLEFY--EDYFSIPYPLPKQDLAAIPDFQSGA 282
Query: 601 NKEWGFHSAKVNCVAWSPDSALVASGSLDTTIII 634
+ WG + + + + + + + AS LD T+ +
Sbjct: 283 MENWGLTTYRESALLFDAEKS-SASSKLDITMTV 315
>pdb|2A79|A Chain A, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
pdb|2R9R|A Chain A, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|G Chain G, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|3LNM|A Chain A, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|C Chain C, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 333
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 15/75 (20%)
Query: 606 FHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWLDNDL 665
FH V + WSP + + SG D+ I +S AS + QWL + +
Sbjct: 199 FHKIGVGAMTWSPLACGIVSGKYDSGIPPYSRAS---------------LKGYQWLKDKI 243
Query: 666 LVSVGQDCNTKIWEI 680
L G+ K+ E+
Sbjct: 244 LSEEGRRQQAKLKEL 258
>pdb|3EB4|A Chain A, Voltage-Dependent K+ Channel Beta Subunit (I211r) In
Complex With Cortisone
Length = 327
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 15/75 (20%)
Query: 606 FHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWLDNDL 665
FH V + WSP + + SG D+ I +S AS + QWL + +
Sbjct: 199 FHKIGVGAMTWSPLACGIVSGKYDSGIPPYSRAS---------------LKGYQWLKDKI 243
Query: 666 LVSVGQDCNTKIWEI 680
L G+ K+ E+
Sbjct: 244 LSEEGRRQQAKLKEL 258
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,567,464
Number of Sequences: 62578
Number of extensions: 1027943
Number of successful extensions: 3871
Number of sequences better than 100.0: 129
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 2288
Number of HSP's gapped (non-prelim): 763
length of query: 683
length of database: 14,973,337
effective HSP length: 105
effective length of query: 578
effective length of database: 8,402,647
effective search space: 4856729966
effective search space used: 4856729966
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)