Query psy15995
Match_columns 683
No_of_seqs 1065 out of 3760
Neff 12.2
Searched_HMMs 29240
Date Fri Aug 16 18:16:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15995.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15995hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 1.7E-82 5.9E-87 661.4 78.0 594 31-683 5-611 (611)
2 2ymu_A WD-40 repeat protein; u 100.0 2.5E-73 8.6E-78 593.9 77.3 560 42-679 14-577 (577)
3 1pgu_A Actin interacting prote 100.0 1.2E-68 4.1E-73 564.0 65.9 576 31-682 5-614 (615)
4 1nr0_A Actin interacting prote 100.0 2.7E-68 9.1E-73 554.7 65.3 563 5-638 23-610 (611)
5 2ymu_A WD-40 repeat protein; u 100.0 1.9E-67 6.5E-72 549.5 71.9 556 3-636 19-577 (577)
6 3sfz_A APAF-1, apoptotic pepti 100.0 2E-67 6.9E-72 598.0 62.8 574 42-681 613-1248(1249)
7 3sfz_A APAF-1, apoptotic pepti 100.0 2.4E-62 8.1E-67 556.4 59.4 571 3-638 618-1248(1249)
8 1pgu_A Actin interacting prote 100.0 7.8E-62 2.7E-66 512.1 55.9 548 4-639 22-614 (615)
9 2oaj_A Protein SNI1; WD40 repe 100.0 1.6E-59 5.3E-64 504.8 56.3 573 82-683 14-784 (902)
10 2oaj_A Protein SNI1; WD40 repe 100.0 8.6E-57 3E-61 483.6 58.6 569 42-669 15-816 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 1.9E-50 6.5E-55 439.3 53.0 480 76-679 4-502 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-50 4.2E-55 440.7 50.4 464 42-635 11-501 (814)
13 1got_B GT-beta; complex (GTP-b 100.0 2.4E-44 8.2E-49 346.2 39.8 293 76-430 46-340 (340)
14 1vyh_C Platelet-activating fac 100.0 1.5E-44 5E-49 356.7 39.2 290 78-432 101-410 (410)
15 3ow8_A WD repeat-containing pr 100.0 3.4E-44 1.2E-48 340.9 38.4 291 77-432 24-320 (321)
16 1vyh_C Platelet-activating fac 100.0 5.4E-44 1.8E-48 352.6 36.5 284 42-346 106-410 (410)
17 2pbi_B Guanine nucleotide-bind 100.0 4.1E-43 1.4E-47 338.8 40.3 294 76-430 55-354 (354)
18 3ow8_A WD repeat-containing pr 100.0 2.3E-43 7.8E-48 335.2 37.7 286 40-346 28-320 (321)
19 4g56_B MGC81050 protein; prote 100.0 1E-43 3.6E-48 343.1 35.6 324 49-436 10-346 (357)
20 1got_B GT-beta; complex (GTP-b 100.0 7.9E-43 2.7E-47 335.6 40.6 295 262-679 45-340 (340)
21 3iz6_a 40S ribosomal protein R 100.0 1.7E-44 6E-49 352.8 28.4 317 63-435 44-377 (380)
22 2ynn_A Coatomer subunit beta'; 100.0 2.6E-42 8.8E-47 326.2 38.9 292 263-681 4-301 (304)
23 2ynn_A Coatomer subunit beta'; 100.0 3.2E-42 1.1E-46 325.6 37.6 293 76-433 4-302 (304)
24 4gqb_B Methylosome protein 50; 100.0 2.7E-42 9.2E-47 329.8 36.7 311 68-436 17-334 (344)
25 4g56_B MGC81050 protein; prote 100.0 1.9E-42 6.3E-47 334.4 34.6 294 39-350 37-346 (357)
26 2pbi_B Guanine nucleotide-bind 100.0 6E-42 2.1E-46 330.7 38.1 297 263-679 55-354 (354)
27 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.5E-42 5E-47 334.2 33.7 314 76-439 6-341 (345)
28 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.6E-42 2.6E-46 329.2 38.6 307 220-646 6-342 (345)
29 3iz6_a 40S ribosomal protein R 100.0 4.2E-43 1.4E-47 343.0 30.2 319 253-682 47-375 (380)
30 3frx_A Guanine nucleotide-bind 100.0 3.5E-42 1.2E-46 327.6 35.6 300 76-434 8-318 (319)
31 3frx_A Guanine nucleotide-bind 100.0 7.1E-42 2.4E-46 325.5 36.4 293 221-640 9-318 (319)
32 4gqb_B Methylosome protein 50; 100.0 3.2E-42 1.1E-46 329.3 33.9 294 39-350 25-334 (344)
33 1gxr_A ESG1, transducin-like e 100.0 1.2E-41 4.1E-46 329.3 37.7 325 45-431 10-335 (337)
34 3vl1_A 26S proteasome regulato 100.0 1.1E-41 3.8E-46 340.0 37.1 346 231-682 58-419 (420)
35 2pm9_A Protein WEB1, protein t 100.0 3.5E-43 1.2E-47 350.7 25.8 361 45-434 13-415 (416)
36 1r5m_A SIR4-interacting protei 100.0 4.1E-41 1.4E-45 337.1 41.0 342 211-638 27-424 (425)
37 2pm9_A Protein WEB1, protein t 100.0 2.5E-42 8.5E-47 344.5 30.9 365 142-640 13-415 (416)
38 1r5m_A SIR4-interacting protei 100.0 1.3E-41 4.4E-46 340.7 35.8 352 66-432 26-424 (425)
39 1erj_A Transcriptional repress 100.0 4.3E-41 1.5E-45 330.3 36.2 284 43-348 63-390 (393)
40 2xzm_R RACK1; ribosome, transl 100.0 9.9E-41 3.4E-45 321.6 37.3 295 221-640 13-341 (343)
41 1erj_A Transcriptional repress 100.0 1.7E-40 5.7E-45 326.2 39.0 289 270-683 62-390 (393)
42 4ery_A WD repeat-containing pr 100.0 4.6E-40 1.6E-44 313.3 40.9 293 262-681 13-311 (312)
43 2hes_X YDR267CP; beta-propelle 100.0 1.1E-40 3.9E-45 318.8 36.3 298 219-639 4-328 (330)
44 1k32_A Tricorn protease; prote 100.0 2.5E-39 8.6E-44 357.8 52.1 518 44-682 14-637 (1045)
45 4ery_A WD repeat-containing pr 100.0 6.5E-40 2.2E-44 312.3 41.1 292 221-638 15-311 (312)
46 1gxr_A ESG1, transducin-like e 100.0 9E-40 3.1E-44 316.1 39.5 321 84-472 8-335 (337)
47 2hes_X YDR267CP; beta-propelle 100.0 3.6E-40 1.2E-44 315.4 35.6 300 74-433 3-328 (330)
48 4aow_A Guanine nucleotide-bind 100.0 7.4E-40 2.5E-44 317.0 36.4 317 67-435 18-339 (340)
49 2xzm_R RACK1; ribosome, transl 100.0 9.2E-40 3.1E-44 314.9 34.9 288 42-348 19-341 (343)
50 3vl1_A 26S proteasome regulato 100.0 9E-40 3.1E-44 326.2 34.2 326 86-433 57-419 (420)
51 4aow_A Guanine nucleotide-bind 100.0 3.4E-38 1.2E-42 305.3 39.7 298 259-641 25-339 (340)
52 3zwl_B Eukaryotic translation 100.0 5.6E-38 1.9E-42 307.8 39.6 308 78-436 25-349 (369)
53 3v7d_B Cell division control p 100.0 7.8E-38 2.7E-42 316.2 41.5 331 47-470 125-459 (464)
54 3gre_A Serine/threonine-protei 100.0 2.6E-39 8.8E-44 324.3 30.3 353 50-430 33-437 (437)
55 3zwl_B Eukaryotic translation 100.0 6.6E-38 2.3E-42 307.3 39.1 304 222-643 25-350 (369)
56 3v7d_B Cell division control p 100.0 4.1E-37 1.4E-41 311.0 44.8 325 221-592 113-460 (464)
57 2j04_B YDR362CP, TAU91; beta p 100.0 3.8E-39 1.3E-43 323.0 29.0 343 185-681 133-516 (524)
58 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.8E-37 6.3E-42 311.1 40.7 326 75-434 108-443 (445)
59 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.7E-37 9.2E-42 309.9 41.9 324 221-640 110-443 (445)
60 3ei3_B DNA damage-binding prot 100.0 1.7E-38 5.7E-43 312.3 32.4 305 68-433 56-382 (383)
61 3ei3_B DNA damage-binding prot 100.0 9.3E-38 3.2E-42 307.0 36.2 303 257-682 58-382 (383)
62 3dm0_A Maltose-binding peripla 100.0 8.2E-38 2.8E-42 331.4 38.4 294 223-639 376-693 (694)
63 2j04_B YDR362CP, TAU91; beta p 100.0 9.5E-40 3.2E-44 327.4 21.2 349 44-434 133-518 (524)
64 1k32_A Tricorn protease; prote 100.0 1.4E-36 4.8E-41 335.9 48.0 545 6-641 20-639 (1045)
65 1k8k_C P40, ARP2/3 complex 41 100.0 3E-38 1E-42 310.0 30.7 322 81-436 4-364 (372)
66 1sq9_A Antiviral protein SKI8; 100.0 1.7E-37 5.8E-42 307.3 35.8 315 77-434 8-396 (397)
67 4a11_B DNA excision repair pro 100.0 1.5E-37 5E-42 309.3 35.5 358 212-683 26-406 (408)
68 4e54_B DNA damage-binding prot 100.0 2.7E-38 9.2E-43 315.3 29.9 302 77-437 111-434 (435)
69 3i2n_A WD repeat-containing pr 100.0 1E-37 3.5E-42 304.3 33.0 299 224-642 13-356 (357)
70 3dm0_A Maltose-binding peripla 100.0 1.8E-37 6E-42 328.9 37.2 307 79-432 376-692 (694)
71 4a11_B DNA excision repair pro 100.0 8.8E-38 3E-42 311.0 32.8 360 63-474 21-405 (408)
72 3k26_A Polycomb protein EED; W 100.0 1.1E-38 3.8E-43 312.4 25.8 320 225-681 14-365 (366)
73 4e54_B DNA damage-binding prot 100.0 6.2E-38 2.1E-42 312.7 30.2 301 222-643 112-434 (435)
74 1sq9_A Antiviral protein SKI8; 100.0 2.5E-37 8.5E-42 306.1 33.0 294 41-349 13-397 (397)
75 1k8k_C P40, ARP2/3 complex 41 100.0 1.8E-37 6.3E-42 304.3 31.2 290 43-349 7-363 (372)
76 3gre_A Serine/threonine-protei 100.0 1.3E-37 4.3E-42 312.0 30.5 384 92-636 34-437 (437)
77 3odt_A Protein DOA1; ubiquitin 100.0 1.1E-36 3.8E-41 290.9 35.3 293 75-440 8-303 (313)
78 2j04_A TAU60, YPL007P, hypothe 100.0 5.7E-38 1.9E-42 303.8 25.7 320 184-628 14-350 (588)
79 4aez_A CDC20, WD repeat-contai 100.0 1.4E-36 4.7E-41 299.9 35.7 292 226-646 88-387 (401)
80 4aez_A CDC20, WD repeat-contai 100.0 1.7E-36 5.8E-41 299.2 35.9 287 47-354 96-387 (401)
81 3odt_A Protein DOA1; ubiquitin 100.0 3.4E-36 1.2E-40 287.6 36.6 289 261-682 7-296 (313)
82 4h5i_A Guanine nucleotide-exch 100.0 1.6E-37 5.3E-42 300.7 27.5 288 46-348 16-344 (365)
83 3dwl_C Actin-related protein 2 100.0 2.8E-38 9.4E-43 310.4 20.6 321 81-431 7-377 (377)
84 2pm7_B Protein transport prote 100.0 3.1E-36 1.1E-40 283.5 33.0 253 79-347 3-285 (297)
85 3k26_A Polycomb protein EED; W 100.0 6.4E-37 2.2E-41 299.8 29.4 295 80-432 13-365 (366)
86 4gga_A P55CDC, cell division c 100.0 7.5E-36 2.6E-40 296.4 37.3 283 48-353 109-401 (420)
87 4h5i_A Guanine nucleotide-exch 100.0 1.7E-36 5.9E-41 293.4 31.2 298 85-434 14-344 (365)
88 3dwl_C Actin-related protein 2 100.0 1E-37 3.6E-42 306.2 23.0 283 44-345 11-377 (377)
89 3i2n_A WD repeat-containing pr 100.0 9.3E-37 3.2E-41 297.5 29.1 290 41-350 15-356 (357)
90 2j04_A TAU60, YPL007P, hypothe 100.0 1.4E-37 4.8E-42 301.1 22.1 314 43-422 14-350 (588)
91 4gga_A P55CDC, cell division c 100.0 9.3E-35 3.2E-39 288.5 38.1 291 274-646 107-402 (420)
92 4ggc_A P55CDC, cell division c 100.0 1.7E-34 5.9E-39 276.3 37.9 285 275-641 28-317 (318)
93 4ggc_A P55CDC, cell division c 100.0 1.4E-34 4.7E-39 277.0 36.0 279 48-349 29-317 (318)
94 2pm7_B Protein transport prote 100.0 7.7E-35 2.6E-39 274.0 32.2 245 42-302 7-284 (297)
95 3bg1_A Protein SEC13 homolog; 100.0 1.3E-35 4.4E-40 281.8 25.7 251 79-348 7-294 (316)
96 3jrp_A Fusion protein of prote 100.0 1.3E-34 4.5E-39 284.9 32.9 262 75-353 1-293 (379)
97 3dw8_B Serine/threonine-protei 100.0 2.4E-34 8.3E-39 289.6 33.6 299 42-346 26-445 (447)
98 3mmy_A MRNA export factor; mRN 100.0 4.5E-34 1.5E-38 279.9 33.8 298 257-639 24-346 (368)
99 3bg1_A Protein SEC13 homolog; 100.0 1.1E-34 3.7E-39 275.5 28.3 270 267-639 8-293 (316)
100 1yfq_A Cell cycle arrest prote 100.0 8.9E-34 3E-38 274.4 35.2 283 266-637 5-322 (342)
101 1yfq_A Cell cycle arrest prote 100.0 4.9E-34 1.7E-38 276.2 31.1 280 79-430 5-321 (342)
102 3dw8_B Serine/threonine-protei 100.0 8.6E-34 2.9E-38 285.6 33.5 305 227-638 26-445 (447)
103 2aq5_A Coronin-1A; WD40 repeat 100.0 5.8E-34 2E-38 281.5 29.8 291 232-643 37-346 (402)
104 1p22_A F-BOX/WD-repeat protein 100.0 1.3E-33 4.5E-38 281.9 31.9 276 45-353 134-420 (435)
105 1p22_A F-BOX/WD-repeat protein 100.0 3E-33 1E-37 279.3 33.1 289 81-439 129-420 (435)
106 3vu4_A KMHSV2; beta-propeller 100.0 4.9E-33 1.7E-37 268.5 31.9 292 69-390 3-336 (355)
107 3jrp_A Fusion protein of prote 100.0 4.5E-33 1.5E-37 273.9 31.8 272 219-641 1-289 (379)
108 3f3f_A Nucleoporin SEH1; struc 100.0 5.8E-33 2E-37 270.1 32.2 259 78-355 4-345 (351)
109 3mmy_A MRNA export factor; mRN 100.0 5.8E-33 2E-37 272.0 31.1 295 69-432 23-345 (368)
110 3f3f_A Nucleoporin SEH1; struc 100.0 4.8E-33 1.7E-37 270.6 29.2 311 223-646 5-344 (351)
111 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.8E-32 6E-37 274.9 33.7 282 46-347 6-391 (450)
112 2aq5_A Coronin-1A; WD40 repeat 100.0 2.2E-33 7.4E-38 277.5 26.3 286 46-350 36-345 (402)
113 3bws_A Protein LP49; two-domai 100.0 3.8E-31 1.3E-35 264.8 40.7 306 247-683 94-433 (433)
114 2vdu_B TRNA (guanine-N(7)-)-me 100.0 8E-32 2.7E-36 270.1 33.6 301 85-433 4-391 (450)
115 1l0q_A Surface layer protein; 100.0 5.5E-31 1.9E-35 259.8 39.0 331 58-420 4-365 (391)
116 3bws_A Protein LP49; two-domai 100.0 1.1E-30 3.8E-35 261.4 41.4 304 66-433 102-432 (433)
117 3jro_A Fusion protein of prote 100.0 2.2E-33 7.4E-38 298.5 20.8 255 78-349 2-287 (753)
118 1l0q_A Surface layer protein; 100.0 2.6E-30 8.9E-35 255.0 41.2 274 98-440 3-282 (391)
119 3vu4_A KMHSV2; beta-propeller 100.0 1E-31 3.5E-36 259.2 30.1 281 41-349 16-338 (355)
120 2w18_A PALB2, fancn, partner a 100.0 2.1E-31 7.1E-36 241.5 27.7 276 53-431 49-355 (356)
121 3lrv_A PRE-mRNA-splicing facto 100.0 1.1E-31 3.7E-36 258.7 27.4 247 279-643 43-296 (343)
122 2xyi_A Probable histone-bindin 100.0 5E-31 1.7E-35 262.2 31.4 251 80-348 123-411 (430)
123 3lrv_A PRE-mRNA-splicing facto 100.0 2.5E-31 8.5E-36 256.1 26.5 277 91-431 42-331 (343)
124 1nir_A Nitrite reductase; hemo 100.0 1.2E-30 4.2E-35 264.1 32.1 334 51-441 144-522 (543)
125 3jro_A Fusion protein of prote 100.0 2.3E-31 7.9E-36 282.9 26.4 257 223-554 3-287 (753)
126 2xyi_A Probable histone-bindin 100.0 1.1E-29 3.9E-34 252.4 33.1 267 134-434 121-411 (430)
127 2w18_A PALB2, fancn, partner a 100.0 6.9E-30 2.4E-34 231.6 27.4 271 244-637 56-355 (356)
128 4gq1_A NUP37; propeller, trans 100.0 5.1E-30 1.7E-34 251.2 27.9 283 228-594 88-388 (393)
129 1nir_A Nitrite reductase; hemo 100.0 1.9E-28 6.6E-33 248.1 36.3 332 237-648 145-523 (543)
130 4gq1_A NUP37; propeller, trans 100.0 2.7E-30 9.3E-35 253.1 20.0 258 145-431 93-387 (393)
131 2hqs_A Protein TOLB; TOLB, PAL 100.0 6.2E-28 2.1E-32 237.5 28.7 300 229-663 62-408 (415)
132 2hqs_A Protein TOLB; TOLB, PAL 100.0 6.9E-28 2.4E-32 237.1 27.2 279 45-348 63-388 (415)
133 1xfd_A DIP, dipeptidyl aminope 100.0 1.8E-27 6E-32 254.7 28.4 352 46-422 18-429 (723)
134 2ecf_A Dipeptidyl peptidase IV 100.0 5.3E-27 1.8E-31 251.6 31.9 336 85-434 36-460 (741)
135 1xfd_A DIP, dipeptidyl aminope 99.9 4.7E-26 1.6E-30 243.7 29.0 365 87-596 18-444 (723)
136 3u4y_A Uncharacterized protein 99.9 4.8E-25 1.6E-29 211.7 32.1 279 51-349 4-306 (331)
137 2ecf_A Dipeptidyl peptidase IV 99.9 7.2E-25 2.5E-29 235.1 34.9 325 142-475 37-460 (741)
138 2z3z_A Dipeptidyl aminopeptida 99.9 5.9E-25 2E-29 234.2 32.4 316 50-435 31-437 (706)
139 2z3z_A Dipeptidyl aminopeptida 99.9 5.2E-25 1.8E-29 234.6 31.8 322 232-641 28-437 (706)
140 3u4y_A Uncharacterized protein 99.9 2.7E-24 9.3E-29 206.5 31.5 287 235-642 3-307 (331)
141 1z68_A Fibroblast activation p 99.9 4.5E-25 1.5E-29 235.5 26.4 359 48-439 19-449 (719)
142 1ri6_A Putative isomerase YBHE 99.9 1.2E-23 4.2E-28 203.3 31.4 270 63-350 13-313 (343)
143 3vgz_A Uncharacterized protein 99.9 1E-23 3.5E-28 204.7 30.3 279 45-338 41-335 (353)
144 1pby_B Quinohemoprotein amine 99.9 8.5E-24 2.9E-28 203.9 28.0 278 58-357 3-320 (337)
145 2ojh_A Uncharacterized protein 99.9 3.2E-24 1.1E-28 202.8 23.8 255 63-338 20-293 (297)
146 1pby_B Quinohemoprotein amine 99.9 1.1E-23 3.9E-28 203.0 28.1 299 244-648 3-319 (337)
147 3vgz_A Uncharacterized protein 99.9 5.1E-23 1.7E-27 199.8 31.9 276 84-381 39-335 (353)
148 1ri6_A Putative isomerase YBHE 99.9 4.6E-23 1.6E-27 199.3 30.5 304 242-620 5-334 (343)
149 2ojh_A Uncharacterized protein 99.9 2.7E-23 9.2E-28 196.4 24.5 260 102-424 17-293 (297)
150 1jmx_B Amine dehydrogenase; ox 99.9 1.7E-22 6E-27 195.7 27.4 282 49-357 4-335 (349)
151 4a5s_A Dipeptidyl peptidase 4 99.9 4.8E-22 1.6E-26 211.6 29.2 364 46-439 18-455 (740)
152 3o4h_A Acylamino-acid-releasin 99.9 2.3E-22 8E-27 208.6 24.8 271 44-347 21-315 (582)
153 3o4h_A Acylamino-acid-releasin 99.9 2.1E-22 7.3E-27 208.9 24.3 272 84-433 20-315 (582)
154 3hfq_A Uncharacterized protein 99.9 8.8E-22 3E-26 190.1 26.7 258 45-308 40-324 (347)
155 3hfq_A Uncharacterized protein 99.9 3.7E-21 1.3E-25 185.7 30.4 269 64-351 15-323 (347)
156 1jmx_B Amine dehydrogenase; ox 99.9 3.5E-21 1.2E-25 186.5 28.5 299 277-648 4-334 (349)
157 3scy_A Hypothetical bacterial 99.9 8.2E-21 2.8E-25 184.4 30.3 270 64-351 26-343 (361)
158 1z68_A Fibroblast activation p 99.9 1.7E-21 5.9E-26 207.8 25.1 334 233-646 19-450 (719)
159 3pe7_A Oligogalacturonate lyas 99.9 7E-21 2.4E-25 187.2 26.1 264 68-350 13-332 (388)
160 3scy_A Hypothetical bacterial 99.9 3.5E-19 1.2E-23 172.9 37.4 298 150-453 10-359 (361)
161 3pe7_A Oligogalacturonate lyas 99.9 2.1E-21 7.1E-26 191.0 21.5 276 50-346 41-381 (388)
162 4a5s_A Dipeptidyl peptidase 4 99.9 3.1E-20 1E-24 197.7 31.6 238 87-349 18-296 (740)
163 2oit_A Nucleoporin 214KDA; NH2 99.9 2.9E-19 9.8E-24 176.0 30.4 272 61-346 19-332 (434)
164 2oit_A Nucleoporin 214KDA; NH2 99.9 1.2E-18 4E-23 171.7 33.4 205 142-348 37-279 (434)
165 1jof_A Carboxy-CIS,CIS-muconat 99.8 6.3E-19 2.2E-23 170.8 28.9 269 65-348 14-342 (365)
166 2oiz_A Aromatic amine dehydrog 99.8 4.9E-19 1.7E-23 170.1 27.7 294 54-371 13-359 (361)
167 3c5m_A Oligogalacturonate lyas 99.8 5.1E-20 1.8E-24 181.7 21.2 291 47-349 38-386 (396)
168 2oiz_A Aromatic amine dehydrog 99.8 1.2E-18 4.2E-23 167.4 28.2 298 95-415 13-360 (361)
169 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.2E-19 7.6E-24 173.9 23.0 247 46-304 41-342 (365)
170 1qks_A Cytochrome CD1 nitrite 99.8 3.8E-17 1.3E-21 164.5 38.0 326 95-441 165-546 (567)
171 3c5m_A Oligogalacturonate lyas 99.8 5.2E-19 1.8E-23 174.5 22.1 298 68-389 13-381 (396)
172 2gop_A Trilobed protease; beta 99.8 5.7E-18 1.9E-22 163.5 28.5 258 46-346 16-330 (347)
173 1qks_A Cytochrome CD1 nitrite 99.8 8.9E-17 3.1E-21 161.8 34.9 318 53-390 164-538 (567)
174 2xdw_A Prolyl endopeptidase; a 99.8 6.3E-17 2.1E-21 171.5 32.1 279 53-349 80-416 (710)
175 3azo_A Aminopeptidase; POP fam 99.8 1.7E-17 5.9E-22 175.2 27.1 300 78-390 16-369 (662)
176 3azo_A Aminopeptidase; POP fam 99.8 2.5E-17 8.7E-22 173.9 27.5 289 44-350 23-372 (662)
177 3dsm_A Uncharacterized protein 99.8 4.5E-16 1.5E-20 147.6 32.4 281 292-661 15-320 (328)
178 2bkl_A Prolyl endopeptidase; m 99.8 2.2E-17 7.4E-22 174.5 25.2 281 52-350 75-400 (695)
179 4a2l_A BT_4663, two-component 99.8 8.8E-12 3E-16 133.9 69.0 562 44-675 42-653 (795)
180 3fvz_A Peptidyl-glycine alpha- 99.8 1.1E-16 3.9E-21 152.1 27.1 253 43-303 22-322 (329)
181 1q7f_A NHL, brain tumor CG1071 99.8 6.8E-16 2.3E-20 144.1 30.8 242 44-349 29-282 (286)
182 1q7f_A NHL, brain tumor CG1071 99.8 4.8E-16 1.6E-20 145.2 29.6 248 270-641 27-282 (286)
183 2dg1_A DRP35, lactonase; beta 99.8 1.8E-16 6.3E-21 151.8 27.1 274 46-338 7-301 (333)
184 3fvz_A Peptidyl-glycine alpha- 99.8 3.1E-16 1.1E-20 149.1 28.2 247 85-347 23-322 (329)
185 3dsm_A Uncharacterized protein 99.8 1E-15 3.4E-20 145.2 31.0 272 64-358 16-312 (328)
186 4a2l_A BT_4663, two-component 99.8 5.8E-12 2E-16 135.3 61.6 525 44-637 87-657 (795)
187 2xdw_A Prolyl endopeptidase; a 99.7 3.7E-16 1.3E-20 165.7 25.8 283 9-305 80-416 (710)
188 3e5z_A Putative gluconolactona 99.7 2.3E-15 8E-20 141.2 26.1 249 78-350 20-289 (296)
189 3sjl_D Methylamine dehydrogena 99.7 4E-15 1.4E-19 139.6 26.5 288 50-358 38-374 (386)
190 2mad_H Methylamine dehydrogena 99.7 3E-14 1E-18 136.5 32.7 281 52-354 28-357 (373)
191 2z2n_A Virginiamycin B lyase; 99.7 9.6E-14 3.3E-18 130.7 35.3 284 270-640 12-296 (299)
192 3sjl_D Methylamine dehydrogena 99.7 2.1E-14 7.3E-19 134.7 29.9 304 278-619 38-384 (386)
193 2z2n_A Virginiamycin B lyase; 99.7 1.7E-13 5.7E-18 129.0 36.5 279 45-349 15-297 (299)
194 2dg1_A DRP35, lactonase; beta 99.7 9.2E-15 3.1E-19 139.9 28.2 286 230-594 6-315 (333)
195 3v9f_A Two-component system se 99.7 1.1E-10 3.6E-15 125.2 62.6 538 44-679 65-653 (781)
196 2gop_A Trilobed protease; beta 99.7 6.8E-15 2.3E-19 141.8 26.6 260 142-432 15-330 (347)
197 3e5z_A Putative gluconolactona 99.7 8E-15 2.7E-19 137.5 26.3 245 266-641 21-288 (296)
198 2mad_H Methylamine dehydrogena 99.7 1.1E-13 3.8E-18 132.6 33.9 281 92-439 27-356 (373)
199 1yr2_A Prolyl oligopeptidase; 99.7 7.5E-15 2.6E-19 156.2 27.4 278 52-349 114-443 (741)
200 1rwi_B Serine/threonine-protei 99.7 4.4E-14 1.5E-18 130.7 27.8 241 46-306 25-267 (270)
201 3c75_H MADH, methylamine dehyd 99.7 8.6E-15 3E-19 140.2 23.0 277 53-354 81-409 (426)
202 3no2_A Uncharacterized protein 99.7 9.5E-14 3.3E-18 127.2 27.5 238 95-355 3-260 (276)
203 3no2_A Uncharacterized protein 99.7 3.8E-14 1.3E-18 129.8 24.3 247 55-323 4-272 (276)
204 1rwi_B Serine/threonine-protei 99.7 9.8E-14 3.4E-18 128.3 27.4 242 87-350 25-267 (270)
205 3c75_H MADH, methylamine dehyd 99.6 1.4E-13 4.7E-18 131.9 28.1 283 239-646 82-409 (426)
206 3v9f_A Two-component system se 99.6 1.1E-09 3.7E-14 117.4 61.5 537 85-680 18-609 (781)
207 2bkl_A Prolyl endopeptidase; m 99.6 4.1E-14 1.4E-18 149.4 25.9 280 149-437 75-401 (695)
208 2qc5_A Streptogramin B lactona 99.6 1.5E-12 5E-17 122.6 33.4 281 271-638 18-299 (300)
209 1yr2_A Prolyl oligopeptidase; 99.6 3E-14 1E-18 151.6 24.0 283 9-306 115-444 (741)
210 2qc5_A Streptogramin B lactona 99.6 4.4E-12 1.5E-16 119.3 34.2 275 45-345 20-298 (300)
211 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.9E-12 6.6E-17 122.6 29.7 240 46-303 19-299 (314)
212 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 2.1E-12 7.1E-17 122.4 28.5 251 84-348 16-300 (314)
213 3g4e_A Regucalcin; six bladed 99.6 4.7E-12 1.6E-16 118.3 28.8 233 84-336 11-261 (297)
214 3s94_A LRP-6, low-density lipo 99.5 2.3E-08 7.8E-13 102.2 56.2 525 57-641 10-553 (619)
215 3iuj_A Prolyl endopeptidase; h 99.5 1.3E-12 4.3E-17 137.6 25.4 247 83-350 126-408 (693)
216 1mda_H Methylamine dehydrogena 99.5 6.2E-13 2.1E-17 125.5 18.5 265 66-358 47-357 (368)
217 3hrp_A Uncharacterized protein 99.5 2.2E-11 7.7E-16 118.5 30.0 240 86-345 131-408 (409)
218 3hrp_A Uncharacterized protein 99.5 1.4E-11 4.9E-16 119.9 28.3 241 44-301 130-408 (409)
219 1kb0_A Quinohemoprotein alcoho 99.5 1.1E-11 3.7E-16 128.9 29.1 309 55-377 77-537 (677)
220 1yiq_A Quinohemoprotein alcoho 99.5 1.4E-11 4.6E-16 128.4 27.8 308 55-376 70-534 (689)
221 1kb0_A Quinohemoprotein alcoho 99.5 2.2E-11 7.5E-16 126.6 29.0 311 284-668 77-536 (677)
222 3iuj_A Prolyl endopeptidase; h 99.5 8.3E-12 2.8E-16 131.4 25.1 243 45-307 129-409 (693)
223 3q7m_A Lipoprotein YFGL, BAMB; 99.5 1.9E-10 6.4E-15 111.8 32.8 305 152-471 52-375 (376)
224 2ghs_A AGR_C_1268P; regucalcin 99.5 1.2E-10 4.3E-15 110.0 30.2 228 88-337 51-292 (326)
225 3g4e_A Regucalcin; six bladed 99.5 4.7E-11 1.6E-15 111.5 26.7 228 47-292 15-261 (297)
226 2qe8_A Uncharacterized protein 99.4 1.3E-11 4.6E-16 117.7 22.5 273 273-636 17-318 (343)
227 3hxj_A Pyrrolo-quinoline quino 99.4 3.4E-11 1.2E-15 114.9 25.2 321 71-434 5-325 (330)
228 3q7m_A Lipoprotein YFGL, BAMB; 99.4 1.8E-10 6.2E-15 111.9 30.5 302 244-592 55-375 (376)
229 1mda_H Methylamine dehydrogena 99.4 1.1E-11 3.7E-16 117.0 20.6 261 108-399 47-354 (368)
230 1xip_A Nucleoporin NUP159; bet 99.4 2.5E-12 8.7E-17 121.3 16.1 173 45-290 38-231 (388)
231 4a0p_A LRP6, LRP-6, low-densit 99.4 3.3E-07 1.1E-11 93.8 61.6 525 56-643 6-553 (628)
232 2qe8_A Uncharacterized protein 99.4 2.7E-11 9.4E-16 115.6 22.5 272 45-344 17-318 (343)
233 3ei3_A DNA damage-binding prot 99.4 3.6E-07 1.2E-11 99.9 56.6 344 329-681 484-912 (1158)
234 3hxj_A Pyrrolo-quinoline quino 99.4 6E-11 2.1E-15 113.2 24.3 300 50-390 25-324 (330)
235 1yiq_A Quinohemoprotein alcoho 99.4 2E-10 6.8E-15 119.7 29.5 313 97-418 70-533 (689)
236 2ghs_A AGR_C_1268P; regucalcin 99.4 3E-10 1E-14 107.4 27.3 224 47-292 51-291 (326)
237 1xip_A Nucleoporin NUP159; bet 99.4 2.6E-11 8.8E-16 114.5 18.5 178 142-335 38-232 (388)
238 3dr2_A Exported gluconolactona 99.4 1.6E-10 5.5E-15 108.3 23.3 230 47-300 47-303 (305)
239 3dr2_A Exported gluconolactona 99.3 1.7E-10 5.7E-15 108.2 22.9 235 78-338 37-298 (305)
240 3ei3_A DNA damage-binding prot 99.3 4E-06 1.4E-10 91.7 64.7 558 88-681 329-954 (1158)
241 2ece_A 462AA long hypothetical 99.3 8.8E-10 3E-14 103.9 23.8 227 52-291 89-399 (462)
242 2ece_A 462AA long hypothetical 99.3 9.5E-09 3.3E-13 97.0 29.3 255 164-421 44-399 (462)
243 1fwx_A Nitrous oxide reductase 99.3 9.9E-11 3.4E-15 114.6 16.4 256 53-350 98-434 (595)
244 1fwx_A Nitrous oxide reductase 99.3 1E-09 3.6E-14 107.5 23.3 302 287-643 18-435 (595)
245 1kv9_A Type II quinohemoprotei 99.3 3.4E-09 1.2E-13 110.1 28.5 303 55-372 66-513 (668)
246 2ad6_A Methanol dehydrogenase 99.2 6.1E-09 2.1E-13 105.8 27.7 306 55-375 62-522 (571)
247 1npe_A Nidogen, entactin; glyc 99.2 3.2E-08 1.1E-12 90.6 29.3 253 56-329 1-263 (267)
248 3s94_A LRP-6, low-density lipo 99.2 6.6E-06 2.3E-10 84.2 53.0 408 44-475 39-511 (619)
249 1w6s_A Methanol dehydrogenase 99.2 1.3E-08 4.6E-13 102.9 28.3 306 55-373 62-529 (599)
250 1kv9_A Type II quinohemoprotei 99.1 2.1E-08 7.1E-13 104.3 27.1 292 284-648 66-497 (668)
251 2hz6_A Endoplasmic reticulum t 99.1 3.1E-11 1.1E-15 116.0 4.4 190 96-355 8-200 (369)
252 2hz6_A Endoplasmic reticulum t 99.1 1.6E-10 5.3E-15 111.1 8.4 256 55-346 8-278 (369)
253 2ad6_A Methanol dehydrogenase 99.1 8.5E-08 2.9E-12 97.4 28.5 108 284-393 62-188 (571)
254 1w6s_A Methanol dehydrogenase 99.1 1.4E-07 4.9E-12 95.5 29.5 111 284-394 62-195 (599)
255 1npe_A Nidogen, entactin; glyc 99.1 5E-07 1.7E-11 82.6 30.7 256 97-370 1-261 (267)
256 1flg_A Protein (quinoprotein e 99.1 1.8E-07 6.2E-12 95.1 29.6 308 55-376 68-545 (582)
257 2iwa_A Glutamine cyclotransfer 99.1 2.6E-08 9E-13 88.3 20.2 206 35-262 11-238 (266)
258 2iwa_A Glutamine cyclotransfer 99.0 4.2E-08 1.4E-12 87.0 20.5 199 404-641 22-239 (266)
259 1flg_A Protein (quinoprotein e 99.0 8.4E-07 2.9E-11 90.2 31.0 107 285-393 69-196 (582)
260 3ott_A Two-component system se 99.0 8.4E-05 2.9E-09 79.3 64.8 565 44-676 21-621 (758)
261 3nol_A Glutamine cyclotransfer 99.0 2.1E-07 7.1E-12 81.2 21.6 184 143-336 44-244 (262)
262 4a0p_A LRP6, LRP-6, low-densit 98.9 8.1E-05 2.8E-09 76.2 61.0 462 161-668 13-535 (628)
263 2xe4_A Oligopeptidase B; hydro 98.9 2.5E-07 8.5E-12 97.9 24.7 246 46-306 175-461 (751)
264 3nol_A Glutamine cyclotransfer 98.9 3.3E-07 1.1E-11 80.0 20.7 184 405-629 45-245 (262)
265 3v64_C Agrin; beta propeller, 98.9 5.8E-06 2E-10 78.4 31.4 246 46-310 35-282 (349)
266 3v65_B Low-density lipoprotein 98.9 4.9E-06 1.7E-10 80.1 30.7 245 48-311 80-326 (386)
267 2fp8_A Strictosidine synthase; 98.9 2.2E-06 7.6E-11 80.8 27.5 243 404-682 20-313 (322)
268 1k3i_A Galactose oxidase precu 98.8 7.4E-07 2.5E-11 93.0 25.5 276 48-336 189-530 (656)
269 3ott_A Two-component system se 98.8 0.00037 1.2E-08 74.4 58.7 520 85-680 21-584 (758)
270 3nok_A Glutaminyl cyclase; bet 98.8 1.2E-06 4E-11 76.4 20.4 182 144-336 57-254 (268)
271 3mbr_X Glutamine cyclotransfer 98.8 4.2E-06 1.5E-10 72.4 23.2 185 142-336 21-223 (243)
272 2fp8_A Strictosidine synthase; 98.8 2.4E-06 8E-11 80.6 23.8 257 86-348 19-314 (322)
273 3nok_A Glutaminyl cyclase; bet 98.8 1.1E-06 3.8E-11 76.6 19.3 182 405-628 57-254 (268)
274 2p4o_A Hypothetical protein; p 98.7 7.1E-06 2.4E-10 76.5 26.3 228 86-338 32-279 (306)
275 2p4o_A Hypothetical protein; p 98.7 2E-05 6.8E-10 73.5 29.3 231 273-586 32-279 (306)
276 2xe4_A Oligopeptidase B; hydro 98.7 4.6E-06 1.6E-10 88.3 27.3 249 83-350 170-461 (751)
277 3qqz_A Putative uncharacterize 98.7 2.9E-05 9.8E-10 68.5 26.3 203 81-301 22-251 (255)
278 1k3i_A Galactose oxidase precu 98.7 2.2E-06 7.6E-11 89.4 22.7 276 321-628 190-530 (656)
279 3mbr_X Glutamine cyclotransfer 98.7 4.5E-06 1.6E-10 72.3 20.4 185 403-628 21-223 (243)
280 3sov_A LRP-6, low-density lipo 98.7 3E-05 1E-09 72.1 27.6 238 57-311 5-246 (318)
281 1ijq_A LDL receptor, low-densi 98.7 6.8E-05 2.3E-09 70.0 29.9 236 57-310 2-245 (316)
282 3v64_C Agrin; beta propeller, 98.6 0.00015 5.2E-09 68.6 32.3 245 88-355 36-283 (349)
283 2xbg_A YCF48-like protein; pho 98.6 0.00015 5.1E-09 68.0 32.0 273 45-345 36-320 (327)
284 3p5b_L Low density lipoprotein 98.6 0.0001 3.4E-09 71.3 31.4 239 56-311 83-328 (400)
285 4hw6_A Hypothetical protein, I 98.6 2.2E-05 7.6E-10 76.6 24.8 240 45-302 139-432 (433)
286 3v65_B Low-density lipoprotein 98.5 0.00015 5.1E-09 69.8 29.8 245 88-355 79-326 (386)
287 3tc9_A Hypothetical hydrolase; 98.5 3.7E-05 1.3E-09 75.1 25.6 240 45-302 137-429 (430)
288 1ijq_A LDL receptor, low-densi 98.5 0.00063 2.2E-08 63.4 32.4 238 99-355 3-246 (316)
289 2xbg_A YCF48-like protein; pho 98.5 0.00058 2E-08 64.0 31.0 272 142-431 36-320 (327)
290 3qqz_A Putative uncharacterize 98.5 0.00024 8.3E-09 62.6 26.1 204 224-431 21-251 (255)
291 3tc9_A Hypothetical hydrolase; 98.4 0.00025 8.7E-09 69.2 28.6 157 142-302 137-300 (430)
292 2xzh_A Clathrin heavy chain 1; 98.4 0.00081 2.8E-08 60.1 28.9 270 293-599 48-336 (365)
293 3p5b_L Low density lipoprotein 98.4 0.0023 7.8E-08 61.8 34.4 223 162-391 91-321 (400)
294 3sov_A LRP-6, low-density lipo 98.4 0.00068 2.3E-08 62.9 28.0 228 379-646 11-245 (318)
295 3kya_A Putative phosphatase; s 98.4 0.00033 1.1E-08 68.3 26.4 250 46-309 140-481 (496)
296 4hw6_A Hypothetical protein, I 98.3 0.00033 1.1E-08 68.3 26.1 202 142-348 139-374 (433)
297 1n7d_A LDL receptor, low-densi 98.3 8.8E-06 3E-10 84.8 15.0 238 57-312 378-623 (699)
298 3m0c_C LDL receptor, low-densi 98.3 0.0011 3.8E-08 69.5 29.7 240 57-310 396-639 (791)
299 1bpo_A Protein (clathrin); cla 98.2 0.0033 1.1E-07 58.8 30.0 270 293-599 47-335 (494)
300 3a9g_A Putative uncharacterize 98.2 0.00081 2.8E-08 63.6 24.6 237 45-291 29-330 (354)
301 3m0c_C LDL receptor, low-densi 98.2 0.0038 1.3E-07 65.5 31.7 212 142-355 424-640 (791)
302 3kya_A Putative phosphatase; s 98.2 0.0036 1.2E-07 61.1 28.7 211 142-355 139-416 (496)
303 3amr_A 3-phytase; beta-propell 98.1 0.0015 5E-08 59.9 24.1 199 152-357 39-274 (355)
304 2ism_A Putative oxidoreductase 98.0 0.0014 4.9E-08 61.9 23.4 233 45-291 31-333 (352)
305 2xzh_A Clathrin heavy chain 1; 98.0 0.0063 2.2E-07 54.5 28.8 271 57-350 37-335 (365)
306 3amr_A 3-phytase; beta-propell 98.0 0.0017 5.7E-08 59.6 21.8 200 413-647 39-272 (355)
307 2p9w_A MAL S 1 allergenic prot 98.0 0.0033 1.1E-07 57.1 23.5 160 271-433 11-215 (334)
308 1n7d_A LDL receptor, low-densi 98.0 6E-05 2E-09 78.6 14.0 217 45-280 406-633 (699)
309 2p9w_A MAL S 1 allergenic prot 97.9 0.0058 2E-07 55.5 22.4 202 230-432 13-264 (334)
310 2vpj_A Kelch-like protein 12; 97.9 0.013 4.6E-07 54.0 26.3 235 95-350 13-281 (301)
311 2ism_A Putative oxidoreductase 97.9 0.0039 1.3E-07 58.9 22.8 227 87-335 32-333 (352)
312 3a9g_A Putative uncharacterize 97.9 0.015 5E-07 54.9 26.4 233 86-335 29-330 (354)
313 1bpo_A Protein (clathrin); cla 97.7 0.041 1.4E-06 51.6 30.9 226 105-356 46-298 (494)
314 2g8s_A Glucose/sorbosone dehyd 97.6 0.05 1.7E-06 51.3 28.0 242 45-296 18-347 (353)
315 3ii7_A Kelch-like protein 7; p 97.6 0.014 4.9E-07 54.0 21.9 227 415-681 13-271 (306)
316 2vpj_A Kelch-like protein 12; 97.6 0.016 5.4E-07 53.6 22.1 220 65-307 31-282 (301)
317 4asc_A Kelch repeat and BTB do 97.5 0.034 1.2E-06 51.7 23.3 111 531-645 147-283 (315)
318 1xi4_A Clathrin heavy chain; a 97.5 0.017 5.7E-07 63.0 22.1 270 293-599 47-335 (1630)
319 2xn4_A Kelch-like protein 2; s 97.4 0.059 2E-06 49.7 23.9 190 152-350 61-279 (302)
320 3pbp_A Nucleoporin NUP82; beta 97.4 0.0061 2.1E-07 57.1 16.5 153 51-204 27-198 (452)
321 3pbp_A Nucleoporin NUP82; beta 97.4 0.026 9E-07 52.9 20.6 146 528-675 27-205 (452)
322 3sre_A PON1, serum paraoxonase 97.4 0.021 7.3E-07 53.2 20.4 205 88-301 52-296 (355)
323 2xn4_A Kelch-like protein 2; s 97.4 0.021 7.1E-07 52.7 20.7 146 532-681 108-275 (302)
324 3das_A Putative oxidoreductase 97.4 0.075 2.6E-06 49.3 26.2 240 84-335 30-326 (347)
325 3das_A Putative oxidoreductase 97.3 0.098 3.4E-06 48.5 26.6 237 45-291 32-326 (347)
326 3ii7_A Kelch-like protein 7; p 97.3 0.11 3.6E-06 48.0 26.6 232 97-351 12-276 (306)
327 2g8s_A Glucose/sorbosone dehyd 97.3 0.13 4.4E-06 48.5 27.2 62 273-334 271-340 (353)
328 1zgk_A Kelch-like ECH-associat 97.3 0.084 2.9E-06 48.8 22.7 235 51-308 20-292 (308)
329 2woz_A Kelch repeat and BTB do 97.3 0.072 2.5E-06 49.5 22.4 112 531-645 157-293 (318)
330 1zgk_A Kelch-like ECH-associat 97.2 0.14 4.9E-06 47.2 25.1 234 95-351 23-291 (308)
331 1xi4_A Clathrin heavy chain; a 97.1 0.033 1.1E-06 60.8 19.4 253 52-351 73-335 (1630)
332 2uvk_A YJHT; unknown function, 97.1 0.022 7.7E-07 54.1 17.0 115 532-648 200-351 (357)
333 4asc_A Kelch repeat and BTB do 97.0 0.2 6.8E-06 46.4 24.2 215 155-380 7-253 (315)
334 1cru_A Protein (soluble quinop 97.0 0.28 9.4E-06 48.0 28.5 113 87-205 28-163 (454)
335 3sbq_A Nitrous-oxide reductase 97.0 0.27 9.3E-06 47.9 25.8 267 286-595 72-408 (638)
336 3sre_A PON1, serum paraoxonase 96.9 0.25 8.6E-06 46.0 28.9 197 143-346 51-297 (355)
337 2woz_A Kelch repeat and BTB do 96.8 0.31 1E-05 45.2 22.8 213 245-464 19-263 (318)
338 1tl2_A L10, protein (tachylect 96.8 0.018 6.1E-07 48.5 11.3 142 46-203 42-199 (236)
339 1tl2_A L10, protein (tachylect 96.7 0.089 3.1E-06 44.3 15.2 146 523-680 42-206 (236)
340 2uvk_A YJHT; unknown function, 96.6 0.2 6.8E-06 47.4 19.8 229 244-476 22-344 (357)
341 2be1_A Serine/threonine-protei 96.6 0.044 1.5E-06 50.5 14.1 192 415-644 11-236 (339)
342 3s25_A Hypothetical 7-bladed b 96.4 0.57 1.9E-05 42.7 27.0 212 235-473 58-292 (302)
343 3sbq_A Nitrous-oxide reductase 96.3 0.89 3E-05 44.4 24.3 309 100-422 73-454 (638)
344 2be1_A Serine/threonine-protei 96.2 0.022 7.4E-07 52.6 9.5 192 244-438 12-236 (339)
345 1cru_A Protein (soluble quinop 96.1 1.2 4.2E-05 43.4 30.8 108 142-249 27-163 (454)
346 3s25_A Hypothetical 7-bladed b 96.0 0.87 3E-05 41.5 27.7 248 148-430 20-290 (302)
347 2zwa_A Leucine carboxyl methyl 95.3 0.66 2.3E-05 48.4 17.7 118 526-643 494-639 (695)
348 2wg3_C Hedgehog-interacting pr 95.1 2.7 9.4E-05 40.9 27.0 52 45-96 14-79 (463)
349 2zwa_A Leucine carboxyl methyl 94.9 1.7 6E-05 45.2 19.4 155 526-681 444-634 (695)
350 3qhy_B Beta-lactamase inhibito 94.4 2.7 9.4E-05 37.7 26.2 220 444-680 22-244 (282)
351 4hvt_A Ritya.17583.B, post-pro 90.4 18 0.00063 37.5 24.6 251 86-346 129-429 (711)
352 3f7f_A Nucleoporin NUP120; nuc 89.5 20 0.00068 36.7 17.4 37 87-125 223-259 (729)
353 3b7f_A Glycosyl hydrolase, BNR 88.4 17 0.00059 34.5 29.8 186 155-343 24-258 (394)
354 4gq2_M Nucleoporin NUP120; bet 87.6 4.7 0.00016 43.7 12.6 41 86-126 236-276 (950)
355 3uc1_A DNA gyrase subunit A; D 87.4 17 0.00059 33.3 28.5 141 532-673 156-321 (327)
356 3uc1_A DNA gyrase subunit A; D 87.0 18 0.00063 33.1 25.6 103 244-347 5-128 (327)
357 2wg3_C Hedgehog-interacting pr 86.1 26 0.00089 34.1 27.4 55 142-196 14-79 (463)
358 4hvt_A Ritya.17583.B, post-pro 85.8 36 0.0012 35.3 22.2 233 52-302 137-429 (711)
359 3no0_A DNA gyrase subunit A; D 85.3 20 0.00067 31.9 21.6 197 231-432 25-245 (276)
360 1suu_A DNA gyrase subunit A; t 85.1 22 0.00076 32.3 25.9 68 529-596 158-232 (312)
361 3kci_A Probable E3 ubiquitin-p 85.0 27 0.00091 33.1 26.9 247 366-640 57-346 (389)
362 1zi0_A DNA gyrase subunit A; b 84.5 23 0.0008 32.1 26.8 244 412-681 1-276 (307)
363 3l6v_A GYRA, DNA gyrase subuni 83.0 31 0.001 32.3 25.8 108 325-432 4-131 (370)
364 1suu_A DNA gyrase subunit A; t 82.6 28 0.00097 31.6 25.8 243 412-680 6-281 (312)
365 3q6k_A 43.2 kDa salivary prote 82.1 33 0.0011 32.1 25.3 197 85-290 86-341 (381)
366 3zwu_A Alkaline phosphatase PH 82.0 3.5 0.00012 41.3 7.8 58 46-103 477-548 (592)
367 3qhy_B Beta-lactamase inhibito 81.5 29 0.00099 31.0 26.4 186 273-476 24-209 (282)
368 4a9v_A PHOX; hydrolase, beta-p 81.4 5.4 0.00018 39.5 8.6 59 45-103 476-548 (592)
369 1wp5_A Topoisomerase IV; broke 81.3 32 0.0011 31.4 23.8 234 239-474 3-277 (323)
370 3b7f_A Glycosyl hydrolase, BNR 80.9 39 0.0013 32.0 31.3 217 187-411 116-391 (394)
371 3no0_A DNA gyrase subunit A; D 79.8 33 0.0011 30.5 22.0 155 229-389 67-245 (276)
372 1wp5_A Topoisomerase IV; broke 78.3 41 0.0014 30.8 25.5 245 412-682 3-277 (323)
373 3kci_A Probable E3 ubiquitin-p 76.7 52 0.0018 31.1 30.5 191 284-475 62-294 (389)
374 1zi0_A DNA gyrase subunit A; b 73.1 54 0.0018 29.7 28.6 242 326-595 1-277 (307)
375 3q6k_A 43.2 kDa salivary prote 72.6 63 0.0022 30.2 22.2 169 164-334 124-341 (381)
376 4gq2_M Nucleoporin NUP120; bet 72.4 1.1E+02 0.0039 33.1 17.8 40 317-356 236-275 (950)
377 4fhn_B Nucleoporin NUP120; pro 68.0 6.1 0.00021 44.0 6.0 40 87-126 239-278 (1139)
378 4a9v_A PHOX; hydrolase, beta-p 65.4 17 0.00059 36.0 7.7 62 565-627 476-549 (592)
379 3zwu_A Alkaline phosphatase PH 61.2 19 0.00064 36.2 7.3 59 524-582 478-548 (592)
380 3l6v_A GYRA, DNA gyrase subuni 56.7 1.3E+02 0.0044 28.1 28.4 245 411-681 4-315 (370)
381 1zvt_A Topoisomerase IV subuni 54.0 1.1E+02 0.0038 26.6 13.4 146 244-390 4-163 (256)
382 1zvt_A Topoisomerase IV subuni 53.4 1.1E+02 0.0039 26.6 15.9 143 535-682 4-163 (256)
383 3f7f_A Nucleoporin NUP120; nuc 48.3 2.3E+02 0.0078 29.2 12.6 32 150-181 228-259 (729)
384 3mez_B Mannose-specific lectin 47.2 82 0.0028 23.1 10.6 60 47-116 25-84 (113)
385 4fhn_B Nucleoporin NUP120; pro 45.5 31 0.0011 38.5 6.7 40 142-181 238-277 (1139)
386 2cn3_A Xyloglucanase, beta-1,4 39.0 3.6E+02 0.012 28.1 46.7 52 3-55 25-82 (737)
387 1sqj_A OXG-RCBH, oligoxylogluc 37.5 3.9E+02 0.013 28.2 45.0 156 85-251 14-190 (789)
388 2cn3_A Xyloglucanase, beta-1,4 37.1 3.8E+02 0.013 27.9 44.4 107 143-251 24-153 (737)
389 4d9s_A UVB-resistance protein 29.3 3.7E+02 0.013 25.3 36.2 197 273-476 16-255 (406)
390 3elq_A Arylsulfate sulfotransf 28.5 4.6E+02 0.016 26.2 24.1 34 141-176 354-388 (571)
391 3mez_B Mannose-specific lectin 26.9 1.9E+02 0.0063 21.1 9.9 26 568-595 59-84 (113)
392 4h3o_A Lectin; cadmium, plant 26.8 1.8E+02 0.0061 20.9 9.7 41 33-74 38-78 (105)
393 2dpf_A Curculin; sweet taste, 20.5 2.5E+02 0.0087 20.4 9.2 26 48-74 53-78 (115)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.7e-82 Score=661.39 Aligned_cols=594 Identities=45% Similarity=0.825 Sum_probs=510.1
Q ss_pred ccceeecCCCcccCCCeEEEeeCCCCCeEEEecCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEE
Q psy15995 31 GNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVR 110 (683)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~ 110 (683)
.+..++++.|...++.+.+++|||||++|+++.++.|++||+++++....+.+|...|++++|||||++||+|+.|++|+
T Consensus 5 ~~~~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~ 84 (611)
T 1nr0_A 5 SQTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVR 84 (611)
T ss_dssp EEEEEECCCCCCCTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ccccEECCCCCcccCceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCCCeeE
Q psy15995 111 IWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKD 190 (683)
Q Consensus 111 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~ 190 (683)
|||+.+++.. ....+..|.++|.+
T Consensus 85 lWd~~~~~~~--------------------------------------------------------~~~~~~~~~~~v~~ 108 (611)
T 1nr0_A 85 IWDTTQTTHI--------------------------------------------------------LKTTIPVFSGPVKD 108 (611)
T ss_dssp EEESSSTTCC--------------------------------------------------------EEEEEECSSSCEEE
T ss_pred EeECCCCcce--------------------------------------------------------eeEeecccCCceEE
Confidence 9998655211 11223345688999
Q ss_pred EEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccc
Q psy15995 191 IAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE 270 (683)
Q Consensus 191 ~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 270 (683)
++|+||++++++++.+.+....++.|+.++....+.+|...|++++|+|++++.|++++.|++|++||..+++....+.+
T Consensus 109 v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~ 188 (611)
T 1nr0_A 109 ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE 188 (611)
T ss_dssp EEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC
T ss_pred EEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecc
Confidence 99999999999998877666789999999999999999999999999999987799999999999999999999999999
Q ss_pred cccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCC-----ccccCeEEEEEccCCCEEEEEECCCcEEEEEC
Q psy15995 271 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP-----AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDI 345 (683)
Q Consensus 271 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 345 (683)
|...|.+++|+|++++|++++.|++|++||..+++.+..+... +|.+.|.+++|+|++++|++++.|++|++||+
T Consensus 189 H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~ 268 (611)
T 1nr0_A 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV 268 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 9999999999999999999999999999999999888777321 49999999999999999999999999999999
Q ss_pred CCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCc
Q psy15995 346 ETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGF 425 (683)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 425 (683)
.+++.+..+............+.++++.+++++.++.+++|+...+ .....+.+|...|++++|+|++++|++++.|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~-~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~ 347 (611)
T 1nr0_A 269 ATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELG-SIDQVRYGHNKAITALSSSADGKTLFSADAEGH 347 (611)
T ss_dssp TTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCC-CcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCc
Confidence 9999888887665555556666778999999999999999998864 456778899999999999999999999999999
Q ss_pred EEEEcCCCCCcceeccCCCCcceeEEEEe-CCeEEEEEcCCeEEEEeCCCCcccCCc---eecCCCCceeeecCC--eEE
Q psy15995 426 ITRWNAKTGENDRVQGAGHGNQINGMKAT-GELLYTCGIDDTIKQVDLSSNAYSGPE---VKLGSQPRGLDIDEN--TLV 499 (683)
Q Consensus 426 i~~w~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~ 499 (683)
|++||+.+++........|...+.++.+. +..+++++.|+.+++|+.......... ..+...+..+.+.++ .++
T Consensus 348 v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~ 427 (611)
T 1nr0_A 348 INSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV 427 (611)
T ss_dssp EEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEE
T ss_pred EEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEE
Confidence 99999999988777667899999999998 778999999999999998876543221 123334444444433 455
Q ss_pred EEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEE
Q psy15995 500 TVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYL 579 (683)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 579 (683)
......+.+++.+. ...+++...+.+++++|++++|++|+.|+.|++||+.++........+|...|++++|+|||++|
T Consensus 428 ~~~~~~v~~~~~~~-~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~l 506 (611)
T 1nr0_A 428 AACYKHIAIYSHGK-LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFL 506 (611)
T ss_dssp EEESSEEEEEETTE-EEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred EEeCceEEEEeCCc-eeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEE
Confidence 55667777777665 66667788899999999999999999999999999988754322335699999999999999999
Q ss_pred EEEeCCCeEEEEECCC-CccccccceeeecccEEEEEecCCCCeEEEeecCCcEEEEeCCCCceee-EeecCCCCCCeeE
Q psy15995 580 VASDAHRKVVLYRVPD-FELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHI-IIKNAHPQSQITR 657 (683)
Q Consensus 580 ~~~~~d~~i~i~~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~~~~~-~~~~~~~~~~v~~ 657 (683)
++++.|++|++|++.+ +++.......+|...|++++|+|||++||+++.|++|++|+++++.... .....|+...|++
T Consensus 507 as~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~ 586 (611)
T 1nr0_A 507 VATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNS 586 (611)
T ss_dssp EEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEE
T ss_pred EEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeE
Confidence 9999999999999987 6655432344599999999999999999999999999999999876443 3333333899999
Q ss_pred EEEccCCeEEEeeCCCcEEEEeeccC
Q psy15995 658 LQWLDNDLLVSVGQDCNTKIWEIAPF 683 (683)
Q Consensus 658 l~~~~~~~l~s~~~d~~v~vw~~~~~ 683 (683)
++|+++..|++++.|++|++|++ +|
T Consensus 587 v~fs~d~~l~s~~~D~~i~lW~~-~~ 611 (611)
T 1nr0_A 587 VIWLNETTIVSAGQDSNIKFWNV-PF 611 (611)
T ss_dssp EEEEETTEEEEEETTSCEEEEEC-CC
T ss_pred EEEcCCCEEEEecCCCCEEEEec-cC
Confidence 99996556999999999999999 45
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.5e-73 Score=593.87 Aligned_cols=560 Identities=23% Similarity=0.368 Sum_probs=476.8
Q ss_pred ccCCCeEEEeeCCCCCeEEEe-cCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccc
Q psy15995 42 TQRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 120 (683)
Q Consensus 42 ~~~~~~~~~~~s~~~~~l~~~-~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~ 120 (683)
.|.+.+.+++|||||++||++ .++.|+|||. +++.++++.+|...|++++|+|||++||+++.|++|+|||+ +++.+
T Consensus 14 GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~ 91 (577)
T 2ymu_A 14 AHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLL 91 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEE
Confidence 466789999999999999988 5789999995 67888899999999999999999999999999999999996 45666
Q ss_pred cccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeE
Q psy15995 121 LKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRM 200 (683)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 200 (683)
..+..|. ..|.+++|+|++++|++++.|+.+++|+...... .....+...+..+.++|++..+
T Consensus 92 ~~~~~~~--------------~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~ 154 (577)
T 2ymu_A 92 QTLTGHS--------------SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL---QTLTGHSSSVWGVAFSPDGQTI 154 (577)
T ss_dssp EEECCCS--------------SCEEEEEECTTSSEEEEEETTSCEEEEETTCCEE---EEECCCSSCEEEEEECTTSSCE
T ss_pred EEEECCC--------------CCEEEEEECCCCCEEEEEcCCCceeeccccccee---eeccCCCCceeeeeeecCCccc
Confidence 6666554 7799999999999999999999999999876532 3345567899999999999999
Q ss_pred EEEecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEE
Q psy15995 201 VVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRY 280 (683)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~ 280 (683)
+..+.... ..++. ...........|...|.++.++|+++. +++++.|+.|++||. +++....+.+|...|.+++|
T Consensus 155 ~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~ 229 (577)
T 2ymu_A 155 ASASDDKT--VKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAF 229 (577)
T ss_dssp EEEETTSE--EEEEC-TTSCEEEEEECCSSCEEEEEECTTSSC-EEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEE
T ss_pred eecccccc--eeccc-cceeeeeeccCCCcceeeeeecCCCCE-EEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEE
Confidence 98887753 34443 345566778889999999999999995 999999999999995 66778888999999999999
Q ss_pred CCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcc
Q psy15995 281 SPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQV 360 (683)
Q Consensus 281 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 360 (683)
+|++++|++++.|+.|++||. +++.+..+.. |...|.+++|+|+++.+++++.|+.+++||.. ++....+ ..+..
T Consensus 230 s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~--~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~-~~h~~ 304 (577)
T 2ymu_A 230 SPDGQTIASASDDKTVKLWNR-NGQLLQTLTG--HSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTL-TGHSS 304 (577)
T ss_dssp CTTSSCEEEEETTSCEEEECT-TSCEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEE-CCCSS
T ss_pred CCCCCEEEEEeCCCEEEEEeC-CCCEEEEEec--CCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEE-ecCCC
Confidence 999999999999999999995 5666777755 99999999999999999999999999999975 4444443 44556
Q ss_pred eeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCcceec
Q psy15995 361 EDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQ 440 (683)
Q Consensus 361 ~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 440 (683)
....+.++|+++.+++++.++.+++||... ..+..+.+|...+.+++|+|+++++++++.|+.|++||.. ++.....
T Consensus 305 ~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~~~ 381 (577)
T 2ymu_A 305 SVWGVAFSPDGQTIASASDDKTVKLWNRNG--QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL 381 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCC--CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEEEEe
Confidence 677888999999999999999999999764 4456778899999999999999999999999999999964 4444443
Q ss_pred cCCCCcceeEEEEe--CCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeee
Q psy15995 441 GAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSL 518 (683)
Q Consensus 441 ~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (683)
..|...|.++.+. +++|++++.|+.|++|+...... ....
T Consensus 382 -~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~-------------------------------------~~~~ 423 (577)
T 2ymu_A 382 -TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL-------------------------------------QTLT 423 (577)
T ss_dssp -ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEE-------------------------------------EEEE
T ss_pred -cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEE-------------------------------------EEec
Confidence 5688999999997 78999999999999999643210 1112
Q ss_pred cCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEeCCCeEEEEECCCCcc
Q psy15995 519 PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFEL 598 (683)
Q Consensus 519 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~ 598 (683)
.+...+.+++++|++++|++++.|+.|++||..... . ....+|...|++++|+||+++|++++.|+.|++||. +++.
T Consensus 424 ~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~-~-~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~ 500 (577)
T 2ymu_A 424 GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQL-L-QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQL 500 (577)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCE-E-EEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCE
T ss_pred CCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCE-E-EEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCE
Confidence 355678999999999999999999999999975433 2 234468999999999999999999999999999996 4555
Q ss_pred ccccceeeecccEEEEEecCCCCeEEEeecCCcEEEEeCCCCceeeEeecCCCCCCeeEEEEc-cCCeEEEeeCCCcEEE
Q psy15995 599 AHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWL-DNDLLVSVGQDCNTKI 677 (683)
Q Consensus 599 ~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~v~v 677 (683)
.. .+.+|...|++++|+||+++||+++.||.|++||. +++.+..+.. |.+.|++++|+ |+++|+|++.|++|++
T Consensus 501 ~~--~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~--h~~~v~~~~fs~dg~~l~s~~~D~~i~~ 575 (577)
T 2ymu_A 501 LQ--TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG--HSSSVWGVAFSPDGQTIASASSDKTVKL 575 (577)
T ss_dssp EE--EEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEEC--CSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred EE--EEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcC--CCCCEEEEEEcCCCCEEEEEeCCCEEEE
Confidence 43 34459999999999999999999999999999996 5676767765 79999999999 7889999999999999
Q ss_pred Ee
Q psy15995 678 WE 679 (683)
Q Consensus 678 w~ 679 (683)
||
T Consensus 576 Wd 577 (577)
T 2ymu_A 576 WN 577 (577)
T ss_dssp EC
T ss_pred eC
Confidence 97
No 3
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.2e-68 Score=564.02 Aligned_cols=576 Identities=30% Similarity=0.561 Sum_probs=490.2
Q ss_pred ccceeecCCCcccCCCeEEEeeCCCCCeEEEecCCeEEEEeCCCC----cccccccCcccc-eEEEEECC--CCcEEEEe
Q psy15995 31 GNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENP----AISDIYTEHSCA-VNVAKYSP--SGFYIASG 103 (683)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~i~v~~~~~~----~~~~~~~~h~~~-v~~~~~s~--d~~~las~ 103 (683)
.++.++++.|..+++.+.+++|||||++|+++.++.|.+||++++ +....+.+|... |++++|+| ++++||++
T Consensus 5 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~ 84 (615)
T 1pgu_A 5 SLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSG 84 (615)
T ss_dssp EEEEEECCCCCCCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEE
T ss_pred chhhccCCCCCCccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEe
Confidence 457788899999999999999999999999999999999999998 888899999999 99999999 99999999
Q ss_pred cCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeeccccc
Q psy15995 104 DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHP 183 (683)
Q Consensus 104 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 183 (683)
+.||.|++||+.+++..... +......+..
T Consensus 85 ~~dg~v~vw~~~~~~~~~~~--------------------------------------------------~~~~~~~~~~ 114 (615)
T 1pgu_A 85 DESGKVIVWGWTFDKESNSV--------------------------------------------------EVNVKSEFQV 114 (615)
T ss_dssp ETTSEEEEEEEEEEGGGTEE--------------------------------------------------EEEEEEEEEC
T ss_pred cCCCEEEEEeCCCCcccccc--------------------------------------------------cccccchhhc
Confidence 99999999998655211000 0001122334
Q ss_pred cCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCc
Q psy15995 184 IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK 263 (683)
Q Consensus 184 ~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~ 263 (683)
+...|.+++|+|+++++++++.+.+....++.|+.++.+..+.+|...|.+++|+|+++..+++++.|+.|++||..+++
T Consensus 115 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~ 194 (615)
T 1pgu_A 115 LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK 194 (615)
T ss_dssp CSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE
T ss_pred ccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc
Confidence 56889999999999999999988766678999999999999999999999999999998679999999999999999999
Q ss_pred eeeecccccc---CeEEEEECCC-CCEEEEEcCCCcEEEEeCCCCeeEEeccCC--ccccCeEEEEEccCCCEEEEEECC
Q psy15995 264 FKMTKQEHSR---FVQAVRYSPS-GSHFASAGFDGKVFLYDGASADLVSELGNP--AHKGGVYAVAWKPDGTQLLTASGD 337 (683)
Q Consensus 264 ~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d 337 (683)
....+..|.. .|.+++|+|+ +++|++++.||.|++||+.+++.+..+... .|...|.+++|+ ++++|++++.|
T Consensus 195 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d 273 (615)
T 1pgu_A 195 FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD 273 (615)
T ss_dssp EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT
T ss_pred eeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCC
Confidence 9999999999 9999999999 999999999999999999999998888311 389999999999 99999999999
Q ss_pred CcEEEEECCCCceeeEEEecC---cceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCC
Q psy15995 338 KTCKLWDIETKSVVSEFIMGN---QVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDR 414 (683)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 414 (683)
+.|++||+++++.+..+.... ......+.+ ++++++++++.+|.+++||+.. ..++..+.+|...|.+++| |+
T Consensus 274 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~g~i~~~d~~~-~~~~~~~~~~~~~v~~~~~-~~- 349 (615)
T 1pgu_A 274 ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA-TGNGRIISLSLDGTLNFYELGH-DEVLKTISGHNKGITALTV-NP- 349 (615)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE-EETTEEEEEETTSCEEEEETTE-EEEEEEECCCSSCEEEEET-TT-
T ss_pred CcEEEEECCCCcEEEEEcCCCCcccCceeEEEe-CCCCeEEEEECCCCEEEEECCC-CcEEEEEeCCCCCEEEEEe-cC-
Confidence 999999999999888876652 122333333 3899999999999999999987 5667788899999999999 88
Q ss_pred CEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEe-CCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeee
Q psy15995 415 GTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKAT-GELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDI 493 (683)
Q Consensus 415 ~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (683)
+++++.||.|++|++. .. . ..|...|.++.+. ++.+++++.|+.+++|++.+..... .+..+.+
T Consensus 350 --l~~~~~dg~i~~w~~~---~~--~-~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~-------~~~~~~~ 414 (615)
T 1pgu_A 350 --LISGSYDGRIMEWSSS---SM--H-QDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGS-------QPKVASA 414 (615)
T ss_dssp --TEEEETTSCEEETTTT---EE--E-CCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSS-------CEEEEEE
T ss_pred --cEEECCCCeEEEEEch---hh--c-CcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccC-------CceEEEE
Confidence 9999999999999998 22 2 6789999999998 8899999999999999988765433 3333344
Q ss_pred cCC--eEEEEEeceEEEEe--CCceeeeecCCCCCcEEEEccCCCEEEEEcC-CCcEEEEEcCCCccCcceeecCCcCee
Q psy15995 494 DEN--TLVTVTVKQISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGA-DSKVHIYELNNKSLSPKAELDHLGPVT 568 (683)
Q Consensus 494 ~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~v~ 568 (683)
.++ .+.......+.+++ .++....+.+...+.+++++ ++++++++. |+.|++||+.+++........|...|+
T Consensus 415 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~ 492 (615)
T 1pgu_A 415 NNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPS 492 (615)
T ss_dssp CSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEE
T ss_pred cCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceE
Confidence 333 33333556677777 67777788888999999999 889999999 999999999987654323345889999
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCccccccceeeecccEEEEEecC----------CCCeEEEeecCCcEEEEeCC
Q psy15995 569 DCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSP----------DSALVASGSLDTTIIIWSLA 638 (683)
Q Consensus 569 ~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~----------d~~~l~~~~~d~~v~iw~~~ 638 (683)
+++|+|++++|++++.|+.|++||+.+++........ |...|++++|+| ++++||+++.||.|++||+.
T Consensus 493 ~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 571 (615)
T 1pgu_A 493 YISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF-RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 571 (615)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC-CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred EEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecC-CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECC
Confidence 9999999999999999999999999999887554322 899999999999 99999999999999999999
Q ss_pred CC-ceeeEeecCCCCCCeeEEEEc-cCCeEEEeeCCCcEEEEeecc
Q psy15995 639 SP-AKHIIIKNAHPQSQITRLQWL-DNDLLVSVGQDCNTKIWEIAP 682 (683)
Q Consensus 639 ~~-~~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~v~vw~~~~ 682 (683)
++ +....+.. |...|++++|+ ++. |++++.|+.|++|+++.
T Consensus 572 ~~~~~~~~~~~--h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 572 RPMKIIKALNA--HKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp CTTCCEEETTS--STTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred CCceechhhhc--CccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 98 44545443 78999999999 666 99999999999999863
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.7e-68 Score=554.67 Aligned_cols=563 Identities=17% Similarity=0.182 Sum_probs=445.9
Q ss_pred eccCCCCCCceeecCCCCCCceeeecccceeecCCCcccCCCeEEEeeCCCCCeEEEe-cCCeEEEEeCCCCc--ccccc
Q psy15995 5 TLPRTQRGQPIVLGGDPKGKNFLYTNGNKYIFATLPRTQRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPA--ISDIY 81 (683)
Q Consensus 5 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~~~i~v~~~~~~~--~~~~~ 81 (683)
++.|+|+|+.|+... .+...++..........+ ..+...+.+++|||||++||++ .++.|+|||+.+++ ....+
T Consensus 23 ~~~~spdg~~l~~~~--~~~v~l~~~~~~~~~~~~-~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~ 99 (611)
T 1nr0_A 23 VLGNTPAGDKIQYCN--GTSVYTVPVGSLTDTEIY-TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI 99 (611)
T ss_dssp CCEECTTSSEEEEEE--TTEEEEEETTCSSCCEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE
T ss_pred EEeeCCCCCEEEeCC--CCEEEEecCCCcccCeEe-cCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEee
Confidence 466788888777643 234444443222222211 2456689999999999999998 58999999997543 34568
Q ss_pred cCcccceEEEEECCCCcEEEEecCC----CCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccce-EE
Q psy15995 82 TEHSCAVNVAKYSPSGFYIASGDIS----GKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGF-YI 156 (683)
Q Consensus 82 ~~h~~~v~~~~~s~d~~~las~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l 156 (683)
.+|.++|.+++|+|||++||+++.+ +.|++|| .++....+..|. ..|.+++|+|++. .|
T Consensus 100 ~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~--------------~~v~~v~f~p~~~~~l 163 (611)
T 1nr0_A 100 PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQA--------------RAMNSVDFKPSRPFRI 163 (611)
T ss_dssp ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCS--------------SCEEEEEECSSSSCEE
T ss_pred cccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCC--------------CCceEEEECCCCCeEE
Confidence 8999999999999999999988765 3677777 455555555554 7899999999987 69
Q ss_pred EeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeee-------cCC
Q psy15995 157 ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS-------GQS 229 (683)
Q Consensus 157 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 229 (683)
++++.|++|++||..+++.. ..+..|...|.+++|+||++++++++.++. +.+|+..+++....+. +|.
T Consensus 164 ~s~s~D~~v~lwd~~~~~~~--~~l~~H~~~V~~v~fspdg~~las~s~D~~--i~lwd~~~g~~~~~~~~~~~~~~~h~ 239 (611)
T 1nr0_A 164 ISGSDDNTVAIFEGPPFKFK--STFGEHTKFVHSVRYNPDGSLFASTGGDGT--IVLYNGVDGTKTGVFEDDSLKNVAHS 239 (611)
T ss_dssp EEEETTSCEEEEETTTBEEE--EEECCCSSCEEEEEECTTSSEEEEEETTSC--EEEEETTTCCEEEECBCTTSSSCSSS
T ss_pred EEEeCCCeEEEEECCCCeEe--eeeccccCceEEEEECCCCCEEEEEECCCc--EEEEECCCCcEeeeeccccccccccC
Confidence 99999999999999887644 456778899999999999999999988765 7899999998888774 799
Q ss_pred cCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccc---cccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCee
Q psy15995 230 KPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE---HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADL 306 (683)
Q Consensus 230 ~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 306 (683)
+.|.+++|+|+++. |++++.|++|++||+.+++....+.. +...+..+.| +++.+++++.|+.+++|+...++.
T Consensus 240 ~~V~~v~~spdg~~-l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~ 316 (611)
T 1nr0_A 240 GSVFGLTWSPDGTK-IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGSI 316 (611)
T ss_dssp SCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEE
T ss_pred CCEEEEEECCCCCE-EEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCc
Confidence 99999999999995 99999999999999999988877653 3345666667 677899999999999999999887
Q ss_pred EEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEE
Q psy15995 307 VSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYL 386 (683)
Q Consensus 307 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~ 386 (683)
...+.. |...|.+++|+|++++|++++.|+.|++||+.+++....+...+......+.+++ +..+++++.++.+++|
T Consensus 317 ~~~~~g--h~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~-~~~l~s~s~d~~v~~w 393 (611)
T 1nr0_A 317 DQVRYG--HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS-KGDLFTVSWDDHLKVV 393 (611)
T ss_dssp EEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT-TSCEEEEETTTEEEEE
T ss_pred ceEEcC--CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECC-CCcEEEEEcCCceEEe
Confidence 777755 9999999999999999999999999999999998776544344555566666664 4578899999999999
Q ss_pred ecCCCCcce--eeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEe--CCeEEEEE
Q psy15995 387 DVNNPSTPI--RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKAT--GELLYTCG 462 (683)
Q Consensus 387 ~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 462 (683)
+........ ...........+++++|++..++++ .++.+++|+. ++ .... .+...+.+++++ ++++++++
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~-~~~~v~~~~~--~~-~~~~--~~~~~v~~va~spdg~~lasgs 467 (611)
T 1nr0_A 394 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSH--GK-LTEV--PISYNSSCVALSNDKQFVAVGG 467 (611)
T ss_dssp CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE-ESSEEEEEET--TE-EEEE--ECSSCEEEEEECTTSCEEEEEE
T ss_pred ecCCccccccceeeeecCCCCcEEEEeCCCcEEEEE-eCceEEEEeC--Cc-eeee--ecCCCceEEEEeCCCCEEEEeC
Confidence 987633211 0111234456789999999888877 5678999983 33 2222 266778888887 88999999
Q ss_pred cCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCC
Q psy15995 463 IDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGAD 542 (683)
Q Consensus 463 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 542 (683)
.|+.|++|++.+... .......+...+.+++|+|++++|++++.|
T Consensus 468 ~D~~v~lwd~~~~~~-----------------------------------~~~~~~~h~~~v~~v~fspdg~~las~s~d 512 (611)
T 1nr0_A 468 QDSKVHVYKLSGASV-----------------------------------SEVKTIVHPAEITSVAFSNNGAFLVATDQS 512 (611)
T ss_dssp TTSEEEEEEEETTEE-----------------------------------EEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCeEEEEEccCCce-----------------------------------eeeeccCCCCceEEEEECCCCCEEEEEcCC
Confidence 999999999875421 011113456689999999999999999999
Q ss_pred CcEEEEEcCC-CccCcceeec-CCcCeeEEEECCCCCEEEEEeCCCeEEEEECCCCccccccceeee-cccEEEEEecCC
Q psy15995 543 SKVHIYELNN-KSLSPKAELD-HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFH-SAKVNCVAWSPD 619 (683)
Q Consensus 543 g~i~i~d~~~-~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~h-~~~v~~~~~s~d 619 (683)
++|++|++.+ ++........ |...|.+++|+|||++||+++.|++|++|++.++.........+| ...|++++|+||
T Consensus 513 ~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d 592 (611)
T 1nr0_A 513 RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE 592 (611)
T ss_dssp SCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEET
T ss_pred CCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCC
Confidence 9999999987 5554332233 999999999999999999999999999999988653221122348 899999999999
Q ss_pred CCeEEEeecCCcEEEEeCC
Q psy15995 620 SALVASGSLDTTIIIWSLA 638 (683)
Q Consensus 620 ~~~l~~~~~d~~v~iw~~~ 638 (683)
++ |++++.|++|++|++.
T Consensus 593 ~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 593 TT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TE-EEEEETTSCEEEEECC
T ss_pred CE-EEEecCCCCEEEEecc
Confidence 98 9999999999999974
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.9e-67 Score=549.51 Aligned_cols=556 Identities=23% Similarity=0.355 Sum_probs=463.5
Q ss_pred eeeccCCCCCCceeecCCCCCCceeeecccceeecCCCcccCCCeEEEeeCCCCCeEEEe-cCCeEEEEeCCCCcccccc
Q psy15995 3 FATLPRTQRGQPIVLGGDPKGKNFLYTNGNKYIFATLPRTQRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIY 81 (683)
Q Consensus 3 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~~~i~v~~~~~~~~~~~~ 81 (683)
+.++.|+|+|++|+.. ..++...+|.. ..+.+..+ ..+.+.+.+++|||||++||++ .++.|+|||. +++.+..+
T Consensus 19 V~~~a~spdg~~las~-~~d~~v~iWd~-~~~~~~~l-~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~ 94 (577)
T 2ymu_A 19 VRGVAFSPDGQTIASA-SDDKTVKLWNR-NGQLLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL 94 (577)
T ss_dssp EEEEEECTTSSCEEEE-ETTSEEEEECT-TSCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEE
T ss_pred EEEEEECCCCCEEEEE-eCCCEEEEEEC-CCCEEEEE-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEE
Confidence 4689999999998875 44566666653 23333333 3467789999999999999987 5789999996 56777889
Q ss_pred cCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecC
Q psy15995 82 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDI 161 (683)
Q Consensus 82 ~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 161 (683)
.+|...|.+++|+||+++|++++.|+.+++|+....... ....+. ..+..+.++|++..+++++.
T Consensus 95 ~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~-~~~~~~--------------~~v~~~~~~~~~~~~~~~~~ 159 (577)
T 2ymu_A 95 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHS--------------SSVWGVAFSPDGQTIASASD 159 (577)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEE-EECCCS--------------SCEEEEEECTTSSCEEEEET
T ss_pred ECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceee-eccCCC--------------CceeeeeeecCCccceeccc
Confidence 999999999999999999999999999999997655322 222222 67889999999999999999
Q ss_pred CccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCC
Q psy15995 162 SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSR 241 (683)
Q Consensus 162 d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 241 (683)
++.+++|+..... ......+...+..++|+|+++++++++.++. +.+|+. +++.+..+.+|...|.+++|+|++
T Consensus 160 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg 233 (577)
T 2ymu_A 160 DKTVKLWNRNGQL---LQTLTGHSSSVWGVAFSPDGQTIASASDDKT--VKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG 233 (577)
T ss_dssp TSEEEEECTTSCE---EEEEECCSSCEEEEEECTTSSCEEEEETTSE--EEEECT-TSCEEEEEECCSSCEEEEEECTTS
T ss_pred ccceeccccceee---eeeccCCCcceeeeeecCCCCEEEEEcCCCE--EEEEeC-CCcEEEEEecCCCCEEEEEECCCC
Confidence 9999999976543 2334456789999999999999999887753 566663 577888899999999999999999
Q ss_pred CeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEE
Q psy15995 242 PFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYA 321 (683)
Q Consensus 242 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~ 321 (683)
+. +++++.|+.|++||. +++.+..+.+|...|.+++|+|+++.+++++.|+.|++|+. +++....+.. |...|.+
T Consensus 234 ~~-l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~--h~~~v~~ 308 (577)
T 2ymu_A 234 QT-IASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTG--HSSSVWG 308 (577)
T ss_dssp SC-EEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECC--CSSCEEE
T ss_pred CE-EEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEec--CCCCeEE
Confidence 95 999999999999995 56778888999999999999999999999999999999995 5666666654 9999999
Q ss_pred EEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeec
Q psy15995 322 VAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGH 401 (683)
Q Consensus 322 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~ 401 (683)
++|+|+++.+++++.|+.+++||...... ..+ ..+......+.++|+++++++++.++.+++|+.. ...+..+.+|
T Consensus 309 ~~~~~~~~~l~t~~~d~~i~~w~~~~~~~-~~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~--~~~~~~~~~~ 384 (577)
T 2ymu_A 309 VAFSPDGQTIASASDDKTVKLWNRNGQHL-QTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGH 384 (577)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTSCEE-EEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--CCEEEEEECC
T ss_pred EEECCCCCEEEEEeCCCeEEEEeCCCCee-EEE-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC--CCEEEEecCC
Confidence 99999999999999999999999875543 333 3455566778899999999999999999999964 4567778899
Q ss_pred cccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEe--CCeEEEEEcCCeEEEEeCCCCcccC
Q psy15995 402 NKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLSSNAYSG 479 (683)
Q Consensus 402 ~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~ 479 (683)
...|.+++|+|++++|++++.|+.|++||.. ++..... ..|...|.++.+. ++++++++.|+.+++|+.....
T Consensus 385 ~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~--- 459 (577)
T 2ymu_A 385 SSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL-TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQL--- 459 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCE---
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEe-cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCE---
Confidence 9999999999999999999999999999964 4444443 5688999999997 7899999999999999975321
Q ss_pred CceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCcce
Q psy15995 480 PEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKA 559 (683)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 559 (683)
......+...+.+++++|++++|++++.|+.|++||.. ++.. ..
T Consensus 460 ----------------------------------~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~~~-~~ 503 (577)
T 2ymu_A 460 ----------------------------------LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLL-QT 503 (577)
T ss_dssp ----------------------------------EEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SCEE-EE
T ss_pred ----------------------------------EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CCEE-EE
Confidence 11112355678999999999999999999999999964 4433 23
Q ss_pred eecCCcCeeEEEECCCCCEEEEEeCCCeEEEEECCCCccccccceeeecccEEEEEecCCCCeEEEeecCCcEEEEe
Q psy15995 560 ELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWS 636 (683)
Q Consensus 560 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~ 636 (683)
..+|...|++++|+||+++|++++.|+.|++||. +++.+. .+.+|.+.|++++|+||+++|++++.|++|++||
T Consensus 504 ~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~--~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 504 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ--TLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEE--EEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEE--EEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 4469999999999999999999999999999996 455543 3445999999999999999999999999999997
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2e-67 Score=597.98 Aligned_cols=574 Identities=18% Similarity=0.216 Sum_probs=493.7
Q ss_pred ccCCCeEEEeeCCCCCeEEEe-cCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccc
Q psy15995 42 TQRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 120 (683)
Q Consensus 42 ~~~~~~~~~~~s~~~~~l~~~-~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~ 120 (683)
.+.+.+.+++|||||++|+++ .++.|.+||+.+++.+..+.+|...|++++|+|||++||+++.||+|+|||+.+++.+
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~ 692 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLV 692 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred cccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceE
Confidence 456789999999999999987 5789999999999999999999999999999999999999999999999999999888
Q ss_pred cccccccCCCCcccceeeeeecceeeeEeec--cceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCC
Q psy15995 121 LKNEFHPIGGPIKDIGTLLSLTSIRNILVLS--IGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ 198 (683)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 198 (683)
..+..|. ..+.+++|+| ++.++++++.|+.|++||+.+++.+ ..+..|.+.|.+++|+|+++
T Consensus 693 ~~~~~~~--------------~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~--~~~~~h~~~v~~~~~sp~~~ 756 (1249)
T 3sfz_A 693 HTYDEHS--------------EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR--NTMFGHTNSVNHCRFSPDDE 756 (1249)
T ss_dssp EEEECCS--------------SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEE--EEECCCSSCEEEEEECSSTT
T ss_pred EEEcCCC--------------CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchh--heecCCCCCEEEEEEecCCC
Confidence 8877665 7799999999 5568999999999999999998755 34557889999999999999
Q ss_pred eEEEEecCCceEEEEEEccCCCceeeeec-------------CCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCcee
Q psy15995 199 RMVVVGEGRERFGHVFMSETGTSVGEISG-------------QSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK 265 (683)
Q Consensus 199 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~ 265 (683)
++++++.++. +.+|+..+++....+.. +...+.+++|+|++.. +++++ ++.+.+||..++...
T Consensus 757 ~l~s~s~dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~-l~~~~-~~~v~~~d~~~~~~~ 832 (1249)
T 3sfz_A 757 LLASCSADGT--LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDK-IIVAA-KNKVLLFDIHTSGLL 832 (1249)
T ss_dssp EEEEEESSSE--EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSE-EEEEE-TTEEEEEETTTCCEE
T ss_pred EEEEEECCCe--EEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCE-EEEEc-CCcEEEEEecCCCce
Confidence 9999987754 78999988876655432 2347889999999995 66655 689999999998887
Q ss_pred eecc-ccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEE
Q psy15995 266 MTKQ-EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWD 344 (683)
Q Consensus 266 ~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 344 (683)
..+. +|...|.+++|+|+++++++++.||.|++||+.++..+..+.. |...|.+++|+|+++.+++++.||.+++|+
T Consensus 833 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--h~~~v~~v~~spdg~~l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 833 AEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRG--HLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910 (1249)
T ss_dssp EEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCC--CccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 7765 8899999999999999999999999999999999999988875 999999999999999999999999999999
Q ss_pred CCCCcee-----------------------------eE-------EEecCcceeceEEEEecCCEEEEEecCCcEEEEec
Q psy15995 345 IETKSVV-----------------------------SE-------FIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDV 388 (683)
Q Consensus 345 ~~~~~~~-----------------------------~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~ 388 (683)
+.+.... .. ...........+.++++++++++++.+|.+.+|++
T Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~ 990 (1249)
T 3sfz_A 911 TKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIEL 990 (1249)
T ss_dssp HHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEET
T ss_pred ccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEc
Confidence 7532100 00 00112234567788889999999999999999999
Q ss_pred CCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEe-CCeEEEEEcCCeE
Q psy15995 389 NNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKAT-GELLYTCGIDDTI 467 (683)
Q Consensus 389 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i 467 (683)
.. ......+.+|...|++++|+|+++++++++.||.|++||+.+++.... ..|...+.++.+. +..+++++.|+.+
T Consensus 991 ~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~v~~~~~~~~~~l~~~~~dg~v 1067 (1249)
T 3sfz_A 991 PN-NRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFL--QAHQETVKDFRLLQDSRLLSWSFDGTV 1067 (1249)
T ss_dssp TT-TSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECC--BCCSSCEEEEEECSSSEEEEEESSSEE
T ss_pred CC-CceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEE--ecCCCcEEEEEEcCCCcEEEEECCCcE
Confidence 87 455677788999999999999999999999999999999998876643 4688999999998 7889999999999
Q ss_pred EEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEE
Q psy15995 468 KQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHI 547 (683)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 547 (683)
++||+.++.... ....+...+.+++++|+++++++++.|+.|++
T Consensus 1068 ~vwd~~~~~~~~------------------------------------~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~i 1111 (1249)
T 3sfz_A 1068 KVWNVITGRIER------------------------------------DFTCHQGTVLSCAISSDATKFSSTSADKTAKI 1111 (1249)
T ss_dssp EEEETTTTCCCE------------------------------------EEECCSSCCCCEEECSSSSSCEEECCSSCCCE
T ss_pred EEEECCCCceeE------------------------------------EEcccCCcEEEEEECCCCCEEEEEcCCCcEEE
Confidence 999998764211 11124567899999999999999999999999
Q ss_pred EEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEeCCCeEEEEECCCCcccccc-------ceeeecccEEEEEecCCC
Q psy15995 548 YELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNK-------EWGFHSAKVNCVAWSPDS 620 (683)
Q Consensus 548 ~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~-------~~~~h~~~v~~~~~s~d~ 620 (683)
||+.+++..... .+|...|++++|+|++++|++++.||.|++||+.+++..... ...+|.+.|++++|+||+
T Consensus 1112 wd~~~~~~~~~l-~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg 1190 (1249)
T 3sfz_A 1112 WSFDLLSPLHEL-KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDS 1190 (1249)
T ss_dssp ECSSSSSCSBCC-CCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTS
T ss_pred EECCCcceeeee-ccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCC
Confidence 999988766433 368899999999999999999999999999999998876543 113488999999999999
Q ss_pred CeEEEeecCCcEEEEeCCCCceeeEeecCCCCCCeeEEEEc-cCCeEEEeeCCCcEEEEeec
Q psy15995 621 ALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWL-DNDLLVSVGQDCNTKIWEIA 681 (683)
Q Consensus 621 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~v~vw~~~ 681 (683)
++|++++ |.|++||+.+++....+.. |...|++++|+ ++.+|++++.||.|.+|++.
T Consensus 1191 ~~l~s~~--g~v~vwd~~~g~~~~~~~~--~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1191 KTLVSAG--GYLKWWNVATGDSSQTFYT--NGTNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp SCEEEES--SSEEEBCSSSCBCCCCCCC--SSCCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred CEEEECC--CeEEEEECCCCceeeeeec--cCCcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence 9999986 8999999999998877755 68899999999 77899999999999999985
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.4e-62 Score=556.43 Aligned_cols=571 Identities=17% Similarity=0.211 Sum_probs=481.1
Q ss_pred eeeccCCCCCCceeecCCCCCCceeeecccceeecCCCcccCCCeEEEeeCCCCCeEEEe-cCCeEEEEeCCCCcccccc
Q psy15995 3 FATLPRTQRGQPIVLGGDPKGKNFLYTNGNKYIFATLPRTQRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIY 81 (683)
Q Consensus 3 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~~~i~v~~~~~~~~~~~~ 81 (683)
..++.|+|+++.++.. ..++...+|..........+. .+.+.+.+++|||+|++|+++ .++.|.+||+.+++.+..+
T Consensus 618 v~~~~~s~~~~~l~s~-~~d~~i~vw~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~ 695 (1249)
T 3sfz_A 618 VYHACFSQDGQRIASC-GADKTLQVFKAETGEKLLDIK-AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY 695 (1249)
T ss_dssp EEEEEECTTSSEEEEE-ETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEEEECCCCCEEEEE-eCCCeEEEEECCCCCEEEEec-cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence 3578899999988764 457777787765555444443 467789999999999999988 5789999999999999999
Q ss_pred cCcccceEEEEECC--CCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEee
Q psy15995 82 TEHSCAVNVAKYSP--SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASG 159 (683)
Q Consensus 82 ~~h~~~v~~~~~s~--d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 159 (683)
.+|...|.+++|+| ++.++++|+.|+.|++||+.+++.+..+..|. ..|.+++|+|++++|+++
T Consensus 696 ~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~--------------~~v~~~~~sp~~~~l~s~ 761 (1249)
T 3sfz_A 696 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT--------------NSVNHCRFSPDDELLASC 761 (1249)
T ss_dssp ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCS--------------SCEEEEEECSSTTEEEEE
T ss_pred cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCC--------------CCEEEEEEecCCCEEEEE
Confidence 99999999999999 55689999999999999999998887776665 789999999999999999
Q ss_pred cCCccEEEEeccccceeeecccc-----------ccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeee-c
Q psy15995 160 DISGKVRIWDTVNKEHILKNEFH-----------PIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS-G 227 (683)
Q Consensus 160 ~~d~~i~iwd~~~~~~~~~~~~~-----------~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 227 (683)
+.||.|++||+.+++........ .....+.+++|+|+++.+++++.+ .+.+|+..++.....+. +
T Consensus 762 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~---~v~~~d~~~~~~~~~~~~~ 838 (1249)
T 3sfz_A 762 SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN---KVLLFDIHTSGLLAEIHTG 838 (1249)
T ss_dssp ESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETT---EEEEEETTTCCEEEEEECS
T ss_pred ECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCC---cEEEEEecCCCceeEEcCC
Confidence 99999999999988655433221 123478899999999999998854 37889999888887766 8
Q ss_pred CCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeE
Q psy15995 228 QSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLV 307 (683)
Q Consensus 228 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 307 (683)
|...|.+++|+|+++. +++++.|+.|++||..+++....+.+|...|.+++|+|+++.+++++.||.|++|++.+....
T Consensus 839 ~~~~v~~~~~sp~~~~-l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~ 917 (1249)
T 3sfz_A 839 HHSTIQYCDFSPYDHL-AVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 917 (1249)
T ss_dssp SSSCCCEEEECSSTTE-EEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSC
T ss_pred CCCceEEEEEcCCCCE-EEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcccccee
Confidence 9999999999999995 999999999999999999999999999999999999999999999999999999996532100
Q ss_pred -----------------------------EeccC------CccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceee
Q psy15995 308 -----------------------------SELGN------PAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVS 352 (683)
Q Consensus 308 -----------------------------~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 352 (683)
..... ..+...+.+++|+|+++++++++.+|.+++||+.+++...
T Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~ 997 (1249)
T 3sfz_A 918 SAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFS 997 (1249)
T ss_dssp CSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEE
T ss_pred eeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceee
Confidence 00000 0134579999999999999999999999999999988766
Q ss_pred EEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCC
Q psy15995 353 EFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 432 (683)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~ 432 (683)
.+. .+......+.++++++++++++.+|.+++||+..+.. .....|...+.+++++|++ .+++++.||.|++||+.
T Consensus 998 ~~~-~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~ 1073 (1249)
T 3sfz_A 998 SGV-GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY--VFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVI 1073 (1249)
T ss_dssp ECC-CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEE--ECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETT
T ss_pred ecc-cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCce--EEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECC
Confidence 543 4556778889999999999999999999999987433 2456799999999999965 67889999999999999
Q ss_pred CCCcceeccCCCCcceeEEEEe--CCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEe
Q psy15995 433 TGENDRVQGAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVE 510 (683)
Q Consensus 433 ~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (683)
+++..... ..|...|.++.++ ++.+++++.|+.+++||+.+......
T Consensus 1074 ~~~~~~~~-~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~------------------------------ 1122 (1249)
T 3sfz_A 1074 TGRIERDF-TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE------------------------------ 1122 (1249)
T ss_dssp TTCCCEEE-ECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC------------------------------
T ss_pred CCceeEEE-cccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeee------------------------------
Confidence 99887766 5688899999988 78999999999999999986542111
Q ss_pred CCceeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCcce--------eecCCcCeeEEEECCCCCEEEEE
Q psy15995 511 NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKA--------ELDHLGPVTDCSFSPSNEYLVAS 582 (683)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------~~~~~~~v~~~~~s~~~~~l~~~ 582 (683)
...+...+.+++++|++++|++++.||.|++||+.+++..... ...|.+.|++++|+||+++|+++
T Consensus 1123 ------l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~ 1196 (1249)
T 3sfz_A 1123 ------LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1196 (1249)
T ss_dssp ------CCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEE
T ss_pred ------eccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEEC
Confidence 1124457899999999999999999999999999988766443 13588899999999999999988
Q ss_pred eCCCeEEEEECCCCccccccceeeecccEEEEEecCCCCeEEEeecCCcEEEEeCC
Q psy15995 583 DAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLA 638 (683)
Q Consensus 583 ~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~ 638 (683)
+ |.|++||+.+++...... .|...|++++|+||+++|++++.||.|++|++.
T Consensus 1197 ~--g~v~vwd~~~g~~~~~~~--~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1197 G--GYLKWWNVATGDSSQTFY--TNGTNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp S--SSEEEBCSSSCBCCCCCC--CSSCCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred C--CeEEEEECCCCceeeeee--ccCCcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence 6 899999999998875443 388999999999999999999999999999975
No 8
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=7.8e-62 Score=512.12 Aligned_cols=548 Identities=14% Similarity=0.150 Sum_probs=457.3
Q ss_pred eeccCCCCCCceeecCCCCCCceeeecccc----eeecCCCcccCCC-eEEEeeCC--CCCeEEEe-cCCeEEEEeCCCC
Q psy15995 4 ATLPRTQRGQPIVLGGDPKGKNFLYTNGNK----YIFATLPRTQRGQ-PIVLGGDP--KGKNFLYT-NGNSVIIRNIENP 75 (683)
Q Consensus 4 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~s~--~~~~l~~~-~~~~i~v~~~~~~ 75 (683)
.++.|+|+++.++..+ .+...++..... .....+ ..+.+. +.+++|+| ++++|+++ .++.|++||+.++
T Consensus 22 ~~~~~spdg~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~-~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~ 98 (615)
T 1pgu_A 22 THLSYDPTTNAIAYPC--GKSAFVRCLDDGDSKVPPVVQF-TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 98 (615)
T ss_dssp CCCEEETTTTEEEEEE--TTEEEEEECCSSCCSSCSEEEE-CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred eEEEECCCCCEEEEec--CCeEEEEECCCCCCccccceEE-ecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCC
Confidence 4678999999988876 455555554332 222222 234567 99999999 99999988 5889999999754
Q ss_pred --------cccccccCcccceEEEEECCCCcEEEEecCC----CCEEEEeCCCcccccccccccCCCCcccceeeeeecc
Q psy15995 76 --------AISDIYTEHSCAVNVAKYSPSGFYIASGDIS----GKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTS 143 (683)
Q Consensus 76 --------~~~~~~~~h~~~v~~~~~s~d~~~las~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (683)
+....+.+|...|.+++|+|++++|++++.+ +.|.+|| .++.+..+..|. ..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~--------------~~ 162 (615)
T 1pgu_A 99 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHS--------------QR 162 (615)
T ss_dssp GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCS--------------SC
T ss_pred cccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCC--------------cc
Confidence 6777888999999999999999999999887 6888888 455555555554 77
Q ss_pred eeeeEeeccce-EEEeecCCccEEEEeccccceeeeccccccCC---CeeEEEEcCC-CCeEEEEecCCceEEEEEEccC
Q psy15995 144 IRNILVLSIGF-YIASGDISGKVRIWDTVNKEHILKNEFHPIGG---PIKDIAWSPD-NQRMVVVGEGRERFGHVFMSET 218 (683)
Q Consensus 144 i~~~~~s~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~i~~~~~s~~-~~~l~~~~~~~~~~~~~~~~~~ 218 (683)
+.+++|+|++. .+++++.|+.|++||+.+++.+. .+..|.. .|.+++|+|+ ++++++++.++. +.+|+..+
T Consensus 163 v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~vwd~~~ 238 (615)
T 1pgu_A 163 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA--SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK--ISCFDGKS 238 (615)
T ss_dssp EEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE--EECSSSCTTCCEEEEEECSTTCCEEEEEETTCC--EEEEETTT
T ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceee--eecccCCCCceEEEEEECCCCCCEEEEEeCCCe--EEEEECCC
Confidence 99999999998 89999999999999999887654 3455667 8999999999 999999887654 78999999
Q ss_pred CCceeee-e---cCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeecccc----ccCeEEEEECCCCCEEEEE
Q psy15995 219 GTSVGEI-S---GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH----SRFVQAVRYSPSGSHFASA 290 (683)
Q Consensus 219 ~~~~~~~-~---~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~ 290 (683)
++.+..+ . .|...|.+++|+ ++.. +++++.|+.|++||+.+++....+..+ ...+.++.|. ++++++++
T Consensus 239 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~-l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 315 (615)
T 1pgu_A 239 GEFLKYIEDDQEPVQGGIFALSWL-DSQK-FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISL 315 (615)
T ss_dssp CCEEEECCBTTBCCCSCEEEEEES-SSSE-EEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEE
T ss_pred CCEeEEecccccccCCceEEEEEc-CCCE-EEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEE
Confidence 9999998 6 899999999999 8774 999999999999999999988888766 4678888885 88899999
Q ss_pred cCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEec
Q psy15995 291 GFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQ 370 (683)
Q Consensus 291 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (683)
+.||.|++||+.+++.+..+.. |...|.+++| |+ +++++.||.|++|++. .+. ..+......+.+ ++
T Consensus 316 ~~~g~i~~~d~~~~~~~~~~~~--~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~---~~~---~~~~~~v~~~~~-~~ 382 (615)
T 1pgu_A 316 SLDGTLNFYELGHDEVLKTISG--HNKGITALTV-NP---LISGSYDGRIMEWSSS---SMH---QDHSNLIVSLDN-SK 382 (615)
T ss_dssp ETTSCEEEEETTEEEEEEEECC--CSSCEEEEET-TT---TEEEETTSCEEETTTT---EEE---CCCCSCEEEEEC-CS
T ss_pred ECCCCEEEEECCCCcEEEEEeC--CCCCEEEEEe-cC---cEEECCCCeEEEEEch---hhc---CcccCceEEEEE-CC
Confidence 9999999999999998888865 9999999999 88 9999999999999998 222 445555666666 66
Q ss_pred CCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeE
Q psy15995 371 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQING 450 (683)
Q Consensus 371 ~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~ 450 (683)
++.+++++.++.+++|++..... ...+.+++++|++..++++ .++.+.+|++.+++...... +...+.+
T Consensus 383 ~~~l~~~~~d~~i~~~~~~~~~~--------~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 451 (615)
T 1pgu_A 383 AQEYSSISWDDTLKVNGITKHEF--------GSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVR--LNSPGSA 451 (615)
T ss_dssp TTCCEEEETTTEEEETTEEEEEC--------SSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEE--CSSCEEE
T ss_pred CcEEEEEeCCCCEEEEEcccCcc--------cCCceEEEEcCCCCEEEEe-CCCceEEEeccCCceeeecc--cCCCceE
Confidence 88999999999999999875322 1267889999999888887 88999999998888777664 7888999
Q ss_pred EEEeCCeEEEEEc-CCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEE
Q psy15995 451 MKATGELLYTCGI-DDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISL 529 (683)
Q Consensus 451 ~~~~~~~l~~~~~-d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (683)
+.+.++++++++. |+.+++|++.+..... .....+...+.++++
T Consensus 452 ~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~-----------------------------------~~~~~~~~~v~~~~~ 496 (615)
T 1pgu_A 452 VSLSQNYVAVGLEEGNTIQVFKLSDLEVSF-----------------------------------DLKTPLRAKPSYISI 496 (615)
T ss_dssp EEECSSEEEEEETTTSCEEEEETTEEEEEE-----------------------------------ECSSCCSSCEEEEEE
T ss_pred EEEcCCEEEEeecCCCeEEEEECCCccccc-----------------------------------cccCCccCceEEEEE
Confidence 9999999999999 9999999998642100 111235567899999
Q ss_pred ccCCCEEEEEcCCCcEEEEEcCCCccCcceeecCCcCeeEEEECC----------CCCEEEEEeCCCeEEEEECCCC-cc
Q psy15995 530 DHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSP----------SNEYLVASDAHRKVVLYRVPDF-EL 598 (683)
Q Consensus 530 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~----------~~~~l~~~~~d~~i~i~~~~~~-~~ 598 (683)
+|++++|++++.||.|++||+.+++........|...|++++|+| ++++|++++.|+.|++||+.++ +.
T Consensus 497 s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 576 (615)
T 1pgu_A 497 SPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI 576 (615)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC
T ss_pred CCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCcee
Confidence 999999999999999999999998876544333899999999999 9999999999999999999987 44
Q ss_pred ccccceeeecccEEEEEecCCCCeEEEeecCCcEEEEeCCC
Q psy15995 599 AHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLAS 639 (683)
Q Consensus 599 ~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~ 639 (683)
.... .+|...|++++|+||++ |++++.||.|++|+++.
T Consensus 577 ~~~~--~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 577 IKAL--NAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEET--TSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred chhh--hcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 4333 34999999999999999 99999999999999875
No 9
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-59 Score=504.82 Aligned_cols=573 Identities=13% Similarity=0.117 Sum_probs=414.3
Q ss_pred cCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecC
Q psy15995 82 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDI 161 (683)
Q Consensus 82 ~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 161 (683)
.+|...|++++|+|++++||+|+.||+|+|||..+.+...... + ...|.+++|+| |++|++++.
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~--------------~~~V~~l~fsp-g~~L~S~s~ 77 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-D--------------RSAIKEMRFVK-GIYLVVINA 77 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-S--------------CCCEEEEEEET-TTEEEEEET
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-C--------------CCCEEEEEEcC-CCEEEEEEC
Confidence 4899999999999999999999999999999988776544332 1 16799999999 889999999
Q ss_pred CccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCce-----------eeeecCCc
Q psy15995 162 SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSV-----------GEISGQSK 230 (683)
Q Consensus 162 d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~ 230 (683)
|++|++||+.+++.+.... +.+.|.+++|+|+++++++++.++. +.+|+.++++.. ..+.+|.+
T Consensus 78 D~~v~lWd~~~~~~~~~~~---~~~~V~~v~~sp~g~~l~sgs~dg~--V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~ 152 (902)
T 2oaj_A 78 KDTVYVLSLYSQKVLTTVF---VPGKITSIDTDASLDWMLIGLQNGS--MIVYDIDRDQLSSFKLDNLQKSSFFPAARLS 152 (902)
T ss_dssp TCEEEEEETTTCSEEEEEE---CSSCEEEEECCTTCSEEEEEETTSC--EEEEETTTTEEEEEEECCHHHHHTCSSSCCC
T ss_pred cCeEEEEECCCCcEEEEEc---CCCCEEEEEECCCCCEEEEEcCCCc--EEEEECCCCccccceeccccccccccccCCC
Confidence 9999999999988665543 4578999999999999999987765 789998877653 34577999
Q ss_pred CeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeecccc------------------ccCeEEEEECCCCCEEEEEcC
Q psy15995 231 PINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH------------------SRFVQAVRYSPSGSHFASAGF 292 (683)
Q Consensus 231 ~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~l~~~~~ 292 (683)
.|.+++|+|++...+++++.|+.| +||+++++....+..| ...|.+++|+|+|++|++++.
T Consensus 153 ~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~ 231 (902)
T 2oaj_A 153 PIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHE 231 (902)
T ss_dssp CCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEET
T ss_pred CeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEEC
Confidence 999999999865569999999999 9999999888777655 577999999999999999999
Q ss_pred CCcEEEEeCCCCeeEEe--cc---CC-----------ccccCeEEEEEcc----CC-CEEEEEECC-----CcEEEEECC
Q psy15995 293 DGKVFLYDGASADLVSE--LG---NP-----------AHKGGVYAVAWKP----DG-TQLLTASGD-----KTCKLWDIE 346 (683)
Q Consensus 293 dg~i~iw~~~~~~~~~~--~~---~~-----------~~~~~i~~~~~~~----~~-~~l~~~~~d-----g~i~iwd~~ 346 (683)
||.|++||+++++.+.. +. .. .|...|.+++|++ ++ ..+++++.+ +.+++|++.
T Consensus 232 Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~ 311 (902)
T 2oaj_A 232 DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLG 311 (902)
T ss_dssp TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEE
T ss_pred CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecC
Confidence 99999999999887653 21 00 1345799999964 43 456777665 378899852
Q ss_pred ------------------CCceeeEEEecCcceeceEEEEe----------cCCEEEEEecCCcEEEEecCCCCccee--
Q psy15995 347 ------------------TKSVVSEFIMGNQVEDQQVSCLW----------QGDYLLTVSLSGFISYLDVNNPSTPIR-- 396 (683)
Q Consensus 347 ------------------~~~~~~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~g~i~~~~~~~~~~~~~-- 396 (683)
+.+....+..........+.+.+ ++..+++++.+|.+++|++..+.....
T Consensus 312 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~ 391 (902)
T 2oaj_A 312 YTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKAS 391 (902)
T ss_dssp ECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGG
T ss_pred CCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccc
Confidence 12222222222222333333322 344789999999999999865421111
Q ss_pred ----e----------------------------------eeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCcce
Q psy15995 397 ----V----------------------------------IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDR 438 (683)
Q Consensus 397 ----~----------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~ 438 (683)
. +.+|...+..++|+|+++.|++|+.|++|++||+.++....
T Consensus 392 ~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~ 471 (902)
T 2oaj_A 392 LFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD 471 (902)
T ss_dssp GSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT
T ss_pred cCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC
Confidence 1 22344444555667899999999999999999998875321
Q ss_pred e--c--------cCCCCcceeEEEEe--CCeEEEEEcCCeEEEEeCCCCcccCC-------ceecCCCCceeeecCCeEE
Q psy15995 439 V--Q--------GAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLSSNAYSGP-------EVKLGSQPRGLDIDENTLV 499 (683)
Q Consensus 439 ~--~--------~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 499 (683)
. + ..+|...|.+++++ +++|++++.|++|++|++.+.+.... ..........+...++...
T Consensus 472 ~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (902)
T 2oaj_A 472 NASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLV 551 (902)
T ss_dssp TBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEE
T ss_pred CceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccc
Confidence 0 1 12688899999998 88999999999999999987642111 0000000000000000000
Q ss_pred EEEeceEEEEe-CCceeeee-cCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCcc----ee-ecCCcCeeEEEE
Q psy15995 500 TVTVKQISIVE-NGAKVSSL-PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPK----AE-LDHLGPVTDCSF 572 (683)
Q Consensus 500 ~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~-~~~~~~v~~~~~ 572 (683)
....+....+. .......+ .+...|++++|+|+| +||+|+.|++|++||+++...+.. .. .+|...|++++|
T Consensus 552 ~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~F 630 (902)
T 2oaj_A 552 DVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEF 630 (902)
T ss_dssp ECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEE
T ss_pred cccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEE
Confidence 00000000000 00112222 267889999999999 999999999999999988765421 12 168889999999
Q ss_pred C-----CCC---CEEEEEeCCCeEEEEEC---CCCccccccceeee-----cccEEEEE-ec------------------
Q psy15995 573 S-----PSN---EYLVASDAHRKVVLYRV---PDFELAHNKEWGFH-----SAKVNCVA-WS------------------ 617 (683)
Q Consensus 573 s-----~~~---~~l~~~~~d~~i~i~~~---~~~~~~~~~~~~~h-----~~~v~~~~-~s------------------ 617 (683)
+ ||| ++|++++.|++|++||+ .+|+.... +.+| .++|.+++ |+
T Consensus 631 s~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~ 708 (902)
T 2oaj_A 631 VIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQ--LMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLS 708 (902)
T ss_dssp EEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEE--EEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGG
T ss_pred EEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEE--ecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccC
Confidence 9 885 89999999999999999 67776533 3334 46777777 65
Q ss_pred ----CCCCeEEEeecCCcEEEEeCCCCceeeEeecCCCCCCeeEE---E------Ec-cCCeEEEeeCCCcEEEEeeccC
Q psy15995 618 ----PDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRL---Q------WL-DNDLLVSVGQDCNTKIWEIAPF 683 (683)
Q Consensus 618 ----~d~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~l---~------~~-~~~~l~s~~~d~~v~vw~~~~~ 683 (683)
+++.+|+++ +..|++|++.+++...... . |...+.++ . |+ ++..|++.+.||.|++|+++.+
T Consensus 709 ~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~-~-~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l 784 (902)
T 2oaj_A 709 KGLCIPGIVLITG--FDDIRLITLGKSKSTHKGF-K-YPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDF 784 (902)
T ss_dssp GTCCCCEEEEEEC--SSEEEEECTTCCCEEEEEC-S-SCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTC
T ss_pred CCCCCCeEEEEEe--ccceEEEeCccccceeeEc-c-cceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcch
Confidence 455555555 7789999999988876663 3 34666776 5 55 5679999999999999998753
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-57 Score=483.55 Aligned_cols=569 Identities=12% Similarity=0.112 Sum_probs=423.3
Q ss_pred ccCCCeEEEeeCCCCCeEEEe-cCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccc
Q psy15995 42 TQRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 120 (683)
Q Consensus 42 ~~~~~~~~~~~s~~~~~l~~~-~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~ 120 (683)
.+.+.+.+++|||++++||++ .++.|+||+..+.+....+ .|..+|++++|+| |++||+++.|++|++||+.+++.+
T Consensus 15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~ 92 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVL 92 (902)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEE
T ss_pred CCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEE
Confidence 346789999999999999998 5899999999888776554 4889999999999 889999999999999999998777
Q ss_pred cccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeee---------ccccccCCCeeEE
Q psy15995 121 LKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILK---------NEFHPIGGPIKDI 191 (683)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~---------~~~~~~~~~i~~~ 191 (683)
..+..+ ..|.+++|+|++++|++|+.||.|++||+.+++.... .....|.++|.++
T Consensus 93 ~~~~~~---------------~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl 157 (902)
T 2oaj_A 93 TTVFVP---------------GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSI 157 (902)
T ss_dssp EEEECS---------------SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEE
T ss_pred EEEcCC---------------CCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEE
Confidence 665421 5789999999999999999999999999998764210 2345678999999
Q ss_pred EEcCCC-CeEEEEecCCceEEEEEEccCCCceeeeecC------------------CcCeEEEEeecCCCeEEEEeeCCC
Q psy15995 192 AWSPDN-QRMVVVGEGRERFGHVFMSETGTSVGEISGQ------------------SKPINSCDFKPSRPFRIITGSEDN 252 (683)
Q Consensus 192 ~~s~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~~l~~~~~d~ 252 (683)
+|+|++ ..+++++.++ .+ +|+.++++.+..+..| ...|++++|+|++.+ |++++.|+
T Consensus 158 ~~sp~~~~~l~~g~~dg--~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~-lasgs~Dg 233 (902)
T 2oaj_A 158 QWNPRDIGTVLISYEYV--TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH-IITIHEDN 233 (902)
T ss_dssp EEETTEEEEEEEECSSC--EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE-EEEEETTC
T ss_pred EEccCCCCEEEEEeCCC--cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE-EEEEECCC
Confidence 999975 5666555443 36 9999998888777665 578999999999985 99999999
Q ss_pred eEEEEcCCCCceeee--c---cc-------------cccCeEEEEEC----CCC-CEEEEEcCC-----CcEEEEeCC--
Q psy15995 253 TIAVFEGPPFKFKMT--K---QE-------------HSRFVQAVRYS----PSG-SHFASAGFD-----GKVFLYDGA-- 302 (683)
Q Consensus 253 ~i~iw~~~~~~~~~~--~---~~-------------~~~~v~~~~~~----~~~-~~l~~~~~d-----g~i~iw~~~-- 302 (683)
.|++||.++++.+.. + .. |...|.+++|+ |++ ..+++|+.+ ..+.+|++.
T Consensus 234 ~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~ 313 (902)
T 2oaj_A 234 SLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYT 313 (902)
T ss_dssp CEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEEC
T ss_pred eEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCC
Confidence 999999998887653 2 11 34579999995 444 467777655 378898842
Q ss_pred ----------------CCeeEEeccCCccccCeEEEEEcc----------CCCEEEEEECCCcEEEEECCCCceeeE---
Q psy15995 303 ----------------SADLVSELGNPAHKGGVYAVAWKP----------DGTQLLTASGDKTCKLWDIETKSVVSE--- 353 (683)
Q Consensus 303 ----------------~~~~~~~~~~~~~~~~i~~~~~~~----------~~~~l~~~~~dg~i~iwd~~~~~~~~~--- 353 (683)
+.+....+.. .+...+.++.+.+ +...+++++.||.|++||+.++.....
T Consensus 314 ~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~ 392 (902)
T 2oaj_A 314 PRYSITSYEGMKNYYANPKQMKIFPL-PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASL 392 (902)
T ss_dssp CCGGGCCHHHHHHHHHSCSEEEEECC-SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGG
T ss_pred CCccccchhhhhhhhcCccceEEEec-CCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccccccc
Confidence 1222333321 2567888888865 344788999999999999977643221
Q ss_pred --------------EEe-----------------------cCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcce-
Q psy15995 354 --------------FIM-----------------------GNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPI- 395 (683)
Q Consensus 354 --------------~~~-----------------------~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~- 395 (683)
+.. ++......+.++|+++.+++++.|+.|++||+..+....
T Consensus 393 ~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~ 472 (902)
T 2oaj_A 393 FPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN 472 (902)
T ss_dssp SCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT
T ss_pred CCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC
Confidence 000 001111234456788999999999999999998753210
Q ss_pred eee---------eeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCc------------------------------
Q psy15995 396 RVI---------KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGEN------------------------------ 436 (683)
Q Consensus 396 ~~~---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~------------------------------ 436 (683)
..+ .+|...|.+++|+|++++||+|+.||+|++||+.+++.
T Consensus 473 ~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (902)
T 2oaj_A 473 ASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVD 552 (902)
T ss_dssp BCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEE
T ss_pred ceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccccc
Confidence 111 17889999999999999999999999999999986631
Q ss_pred --------------ceeccCCCCcceeEEEEe--CCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEE
Q psy15995 437 --------------DRVQGAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVT 500 (683)
Q Consensus 437 --------------~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (683)
......+|...|.+++++ + +|++++.|++|++||+.+......
T Consensus 553 ~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~-------------------- 611 (902)
T 2oaj_A 553 VRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYM-------------------- 611 (902)
T ss_dssp CGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEE--------------------
T ss_pred ccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEE--------------------
Confidence 011225689999999998 6 999999999999999876432100
Q ss_pred EEeceEEEEeCCceeeee--cCCCCCcEEEEc-----cCC---CEEEEEcCCCcEEEEEc---CCCccCccee----ecC
Q psy15995 501 VTVKQISIVENGAKVSSL--PIDYEPSSISLD-----HEH---GLVAVGGADSKVHIYEL---NNKSLSPKAE----LDH 563 (683)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----~~~---~~l~~~~~dg~i~i~d~---~~~~~~~~~~----~~~ 563 (683)
.....+ .+...|++++|+ ||+ ++|++|+.|++|++||+ .+++....+. ..+
T Consensus 612 ------------~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~ 679 (902)
T 2oaj_A 612 ------------ENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTS 679 (902)
T ss_dssp ------------EEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCS
T ss_pred ------------eehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCC
Confidence 000011 245668999999 885 89999999999999999 6665443222 123
Q ss_pred CcCeeEEE-EC----------------------CCCCEEEEEeCCCeEEEEECCCCccccccceeeecccEEEE---E--
Q psy15995 564 LGPVTDCS-FS----------------------PSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCV---A-- 615 (683)
Q Consensus 564 ~~~v~~~~-~s----------------------~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~~---~-- 615 (683)
.++|..++ |+ +++..|+++ +..++||++.+++..++. +. |...+.++ .
T Consensus 680 ~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~-~~-~~~~~~~v~~~~~~ 755 (902)
T 2oaj_A 680 KGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKG-FK-YPLAATGLSYISTV 755 (902)
T ss_dssp SCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEE-CS-SCEEEEEEEEEEEE
T ss_pred CCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeE-cc-cceeeeEEEEEEec
Confidence 57777776 65 455555554 778999999998887654 33 55556665 6
Q ss_pred ----ecCCCCeEEEeecCCcEEEEeCCCCceeeEeecCCCC--CCeeEEEEc-cCCeEEEe
Q psy15995 616 ----WSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQ--SQITRLQWL-DNDLLVSV 669 (683)
Q Consensus 616 ----~s~d~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~--~~v~~l~~~-~~~~l~s~ 669 (683)
|++++..|++++.||+|++|++.+.+++..+...... ..+....|+ .++.++-.
T Consensus 756 ~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 816 (902)
T 2oaj_A 756 EKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPIAAKYITESSVLRNGDIAIRV 816 (902)
T ss_dssp CSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSSCCCHHHHTTCEECTTSCEEEEC
T ss_pred cccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCcccccccccceEEcCCCCEEEEe
Confidence 7889999999999999999999999998877542211 122345566 55544433
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.9e-50 Score=439.26 Aligned_cols=480 Identities=17% Similarity=0.216 Sum_probs=377.8
Q ss_pred cccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceE
Q psy15995 76 AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFY 155 (683)
Q Consensus 76 ~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 155 (683)
+..+.+.+|.+.|++++|+|+|++||+++.||.|+|||+.+++.+..+..|. ..|.+++|+|++++
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~--------------~~v~~~~~s~~~~~ 69 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTE--------------TPVRAGKFIARKNW 69 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCS--------------SCEEEEEEEGGGTE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCC--------------CcEEEEEEeCCCCE
Confidence 3456788999999999999999999999999999999999998888877665 78999999999999
Q ss_pred EEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCC-CceeeeecCCcCeEE
Q psy15995 156 IASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG-TSVGEISGQSKPINS 234 (683)
Q Consensus 156 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~ 234 (683)
|++++.||.|++||+.+++.+. .+..|.+.|.+++|+|+++++++++.++. +.+|+++++ .....+.+|...|.+
T Consensus 70 l~~~~~dg~i~vw~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--i~vw~~~~~~~~~~~~~~~~~~v~~ 145 (814)
T 3mkq_A 70 IIVGSDDFRIRVFNYNTGEKVV--DFEAHPDYIRSIAVHPTKPYVLSGSDDLT--VKLWNWENNWALEQTFEGHEHFVMC 145 (814)
T ss_dssp EEEEETTSEEEEEETTTCCEEE--EEECCSSCEEEEEECSSSSEEEEEETTSE--EEEEEGGGTSEEEEEEECCSSCEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEE--EEecCCCCEEEEEEeCCCCEEEEEcCCCE--EEEEECCCCceEEEEEcCCCCcEEE
Confidence 9999999999999999988654 44567899999999999999998887654 789999887 667788999999999
Q ss_pred EEeec-CCCeEEEEeeCCCeEEEEcCCCCceeeeccccc-cCeEEEEECC--CCCEEEEEcCCCcEEEEeCCCCeeEEec
Q psy15995 235 CDFKP-SRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS-RFVQAVRYSP--SGSHFASAGFDGKVFLYDGASADLVSEL 310 (683)
Q Consensus 235 ~~~~~-~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 310 (683)
++|+| ++. .+++++.||.|++||+.+++....+..+. ..+.+++|+| +++++++++.||.|++||..+++.+..+
T Consensus 146 ~~~~p~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 224 (814)
T 3mkq_A 146 VAFNPKDPS-TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224 (814)
T ss_dssp EEEETTEEE-EEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCC-EEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 99999 555 59999999999999998888777776554 8899999999 9999999999999999999999998888
Q ss_pred cCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCC
Q psy15995 311 GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNN 390 (683)
Q Consensus 311 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~ 390 (683)
.. |...|.+++|+|+++++++++.||.|++||+.+++....+
T Consensus 225 ~~--~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~------------------------------------ 266 (814)
T 3mkq_A 225 EG--HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL------------------------------------ 266 (814)
T ss_dssp EC--CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEE------------------------------------
T ss_pred cC--CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe------------------------------------
Confidence 65 8899999999999999999999999999999987665433
Q ss_pred CCcceeeeeeccccEEEEEEeCCCCE-EEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEEEEcCCe---
Q psy15995 391 PSTPIRVIKGHNKPITALALSPDRGT-VFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDT--- 466 (683)
Q Consensus 391 ~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~--- 466 (683)
..|...+.+++|+|++.. +++++.++.+.+|++....... .+...+..+++++.+..
T Consensus 267 --------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~g~~~~~~~~~~~~~~ 327 (814)
T 3mkq_A 267 --------NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTL-----------SLDPVGKLVWSGGKNAAASD 327 (814)
T ss_dssp --------CCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCE-----------EECSSSEEEEECCTTSCTTC
T ss_pred --------ecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCcee-----------EECCCCCEEEECccccccee
Confidence 446678888999998763 2444456678888876543321 22222344444433321
Q ss_pred EEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCCcEE
Q psy15995 467 IKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVH 546 (683)
Q Consensus 467 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 546 (683)
+....+............. ............+.+++++|+++++++++ ++.+.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~ 380 (814)
T 3mkq_A 328 IFTAVIRGNEEVEQDEPLS--------------------------LQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYV 380 (814)
T ss_dssp EEEEECCSCCCCCSSSCBC--------------------------CCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEE
T ss_pred eeeeecccccccccCccce--------------------------eeeecCCCCccCCceeEECCCCCEEEEec-CCEEE
Confidence 1111111000000000000 00011122445689999999999999998 89999
Q ss_pred EEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEeCCCeEEEEECCCCccccccceeeecccEEEEEecCCC---CeE
Q psy15995 547 IYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDS---ALV 623 (683)
Q Consensus 547 i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~---~~l 623 (683)
+|++..... .+.+.+.+++|+|+++++++++.++.+++|+. +.+|...+.+++|+||+ ++|
T Consensus 381 i~~~~~~~~------~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~----------~~~~~~~v~~~~~s~dg~~~~~l 444 (814)
T 3mkq_A 381 IYTALAWRN------KAFGKCQDFVWGPDSNSYALIDETGQIKYYKN----------FKEVTSWSVPMHSAIDRLFSGAL 444 (814)
T ss_dssp EEETTTTEE------EEEEECSEEEECTTSSCEEEECTTCCEEEEET----------TEECTTCCCCCSSCCCEEECSSS
T ss_pred EEECccccc------cCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC----------CCCccceEEcCCcCccceecceE
Confidence 999754332 24567899999999999999999999999962 12377889999999998 689
Q ss_pred EEeecCCcEEEEeCCCCceeeEeecCCCCCCeeEEEEc-cCCeEEEe------eCCCcEEEEe
Q psy15995 624 ASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWL-DNDLLVSV------GQDCNTKIWE 679 (683)
Q Consensus 624 ~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~l~s~------~~d~~v~vw~ 679 (683)
++++.|+.|++||+.+++.+..+.. |.. .++|+ ++++|+++ +.|..+.+|.
T Consensus 445 ~~~~~d~~v~~~d~~~~~~~~~~~~--~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 445 LGVKSDGFVYFFDWDNGTLVRRIDV--NAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp EEEEETTEEEEECTTTCCEEEEESS--CEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred EEEecCCEEEEEECCcCcEEEEEec--CCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 9999999999999999988877754 332 99999 77899998 6666555553
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.2e-50 Score=440.75 Aligned_cols=464 Identities=17% Similarity=0.175 Sum_probs=379.4
Q ss_pred ccCCCeEEEeeCCCCCeEEEe-cCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccc
Q psy15995 42 TQRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 120 (683)
Q Consensus 42 ~~~~~~~~~~~s~~~~~l~~~-~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~ 120 (683)
.+.+.+.+++|||+|++|+++ .+|.|.|||+.+++.+..+.+|..+|++++|+|++++||+++.||.|++||+.+++.+
T Consensus 11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~ 90 (814)
T 3mkq_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV 90 (814)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEE
T ss_pred cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 356789999999999999988 5789999999999999999999999999999999999999999999999999999888
Q ss_pred cccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcC-CCCe
Q psy15995 121 LKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP-DNQR 199 (683)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~ 199 (683)
..+..|. ..+.+++|+|++++|++++.||.|++||+.++.. ....+..|...|.+++|+| +++.
T Consensus 91 ~~~~~~~--------------~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~ 155 (814)
T 3mkq_A 91 VDFEAHP--------------DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA-LEQTFEGHEHFVMCVAFNPKDPST 155 (814)
T ss_dssp EEEECCS--------------SCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE-EEEEEECCSSCEEEEEEETTEEEE
T ss_pred EEEecCC--------------CCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce-EEEEEcCCCCcEEEEEEEcCCCCE
Confidence 8776665 7799999999999999999999999999988633 2344566789999999999 7888
Q ss_pred EEEEecCCceEEEEEEccCCCceeeeecCC-cCeEEEEeec--CCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeE
Q psy15995 200 MVVVGEGRERFGHVFMSETGTSVGEISGQS-KPINSCDFKP--SRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQ 276 (683)
Q Consensus 200 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~--~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~ 276 (683)
+++++.++. +.+|+...+.....+..+. ..+.+++|+| +++. +++++.||.|++||..+++....+.+|...|.
T Consensus 156 l~~~~~dg~--v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~ 232 (814)
T 3mkq_A 156 FASGCLDRT--VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY-MITASDDLTIKIWDYQTKSCVATLEGHMSNVS 232 (814)
T ss_dssp EEEEETTSE--EEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCE-EEEECTTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred EEEEeCCCe--EEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCE-EEEEeCCCEEEEEECCCCcEEEEEcCCCCCEE
Confidence 888887654 7889988888877777665 8999999999 8885 99999999999999999999999999999999
Q ss_pred EEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCE-EEEEECCCcEEEEECCCCceeeEEE
Q psy15995 277 AVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQ-LLTASGDKTCKLWDIETKSVVSEFI 355 (683)
Q Consensus 277 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~ 355 (683)
+++|+|+++++++++.||.|++||+.+++....+.. +...+.+++|+|+++. +++++.++.+.+|++......
T Consensus 233 ~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 306 (814)
T 3mkq_A 233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV--GLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPT---- 306 (814)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECC--SSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCC----
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeec--CCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCce----
Confidence 999999999999999999999999999999988876 8889999999999874 355555777999998765432
Q ss_pred ecCcceeceEEEEecCCEEEEEecCCc---EEE------EecCCCC---cceeeeeeccccEEEEEEeCCCCEEEEEeCC
Q psy15995 356 MGNQVEDQQVSCLWQGDYLLTVSLSGF---ISY------LDVNNPS---TPIRVIKGHNKPITALALSPDRGTVFTGSHD 423 (683)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~g~---i~~------~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 423 (683)
..+.+++..+++++.+.. +.. |++.... ........+...+.+++|+|+|+++++++ +
T Consensus 307 ---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~ 376 (814)
T 3mkq_A 307 ---------LSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-D 376 (814)
T ss_dssp ---------EEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-T
T ss_pred ---------eEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-C
Confidence 334456666666554432 111 1111111 12233455667889999999999999988 8
Q ss_pred CcEEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEe
Q psy15995 424 GFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTV 503 (683)
Q Consensus 424 g~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (683)
+.+.+|++.......
T Consensus 377 ~~~~i~~~~~~~~~~----------------------------------------------------------------- 391 (814)
T 3mkq_A 377 GEYVIYTALAWRNKA----------------------------------------------------------------- 391 (814)
T ss_dssp TEEEEEETTTTEEEE-----------------------------------------------------------------
T ss_pred CEEEEEECccccccC-----------------------------------------------------------------
Confidence 999999964221100
Q ss_pred ceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCcceeecCCcCeeEEEECCCC---CEEE
Q psy15995 504 KQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSN---EYLV 580 (683)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~ 580 (683)
...+.+++|+|+++++++++.+|.|++|+.. .+|...+.+++|+|++ .+|+
T Consensus 392 -----------------~~~i~~~~~spdg~~la~~~~~g~v~l~~~~---------~~~~~~v~~~~~s~dg~~~~~l~ 445 (814)
T 3mkq_A 392 -----------------FGKCQDFVWGPDSNSYALIDETGQIKYYKNF---------KEVTSWSVPMHSAIDRLFSGALL 445 (814)
T ss_dssp -----------------EEECSEEEECTTSSCEEEECTTCCEEEEETT---------EECTTCCCCCSSCCCEEECSSSE
T ss_pred -----------------CCceEEEEEeCCCCeEEEEeCCCcEEEEECC---------CCccceEEcCCcCccceecceEE
Confidence 0135789999999999999999999999622 2466778899999998 6889
Q ss_pred EEeCCCeEEEEECCCCccccccceeeecccEEEEEecCCCCeEEEe------ecCCcEEEE
Q psy15995 581 ASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASG------SLDTTIIIW 635 (683)
Q Consensus 581 ~~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~------~~d~~v~iw 635 (683)
+++.|+.|++||+.+++.+..... |.. .++|+|||++|+++ +.++.+.+|
T Consensus 446 ~~~~d~~v~~~d~~~~~~~~~~~~--~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~ 501 (814)
T 3mkq_A 446 GVKSDGFVYFFDWDNGTLVRRIDV--NAK---DVIWSDNGELVMIVNTNSNGDEASGYTLL 501 (814)
T ss_dssp EEEETTEEEEECTTTCCEEEEESS--CEE---EEEECTTSSEEEEEECCCSSCSCSEEEEE
T ss_pred EEecCCEEEEEECCcCcEEEEEec--CCC---EEEEcCCCCEEEEEEcCcccCCceEEEEE
Confidence 999999999999999887655432 332 89999999999999 555544444
No 13
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.4e-44 Score=346.16 Aligned_cols=293 Identities=20% Similarity=0.352 Sum_probs=261.4
Q ss_pred cccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceE
Q psy15995 76 AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFY 155 (683)
Q Consensus 76 ~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 155 (683)
+...++.+|.+.|++++|+||+++|++|+.||+|+|||+.+++.+..+..+. ..+.+++|+|++++
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~--------------~~v~~~~~s~~~~~ 111 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRS--------------SWVMTCAYAPSGNY 111 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSS--------------SCEEEEEECTTSSE
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCC--------------ccEEEEEECCCCCE
Confidence 4456789999999999999999999999999999999999998877776665 67899999999999
Q ss_pred EEeecCCccEEEEeccccce--eeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeecCCcCeE
Q psy15995 156 IASGDISGKVRIWDTVNKEH--ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPIN 233 (683)
Q Consensus 156 l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 233 (683)
|++++.|+.+++||+.+++. .....+..|.+.|.++.|++++. +++++.++. +.+|+.++++.+..+.+|...|.
T Consensus 112 l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~--i~~wd~~~~~~~~~~~~h~~~v~ 188 (340)
T 1got_B 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTT--CALWDIETGQQTTTFTGHTGDVM 188 (340)
T ss_dssp EEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSC--EEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCc--EEEEECCCCcEEEEEcCCCCceE
Confidence 99999999999999987542 23345667889999999999886 566665543 78999999999999999999999
Q ss_pred EEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCC
Q psy15995 234 SCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP 313 (683)
Q Consensus 234 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 313 (683)
+++|+|++++ +++++.|+.|++||+++++....+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+...
T Consensus 189 ~~~~~~~~~~-l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~ 267 (340)
T 1got_B 189 SLSLAPDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267 (340)
T ss_dssp EEEECTTSSE-EEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT
T ss_pred EEEECCCCCE-EEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccC
Confidence 9999999985 999999999999999999999999999999999999999999999999999999999999888777644
Q ss_pred ccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCc
Q psy15995 314 AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPST 393 (683)
Q Consensus 314 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~ 393 (683)
.+...|.+++|+|++++|++++.|+.|++||+.+++.+.
T Consensus 268 ~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~----------------------------------------- 306 (340)
T 1got_B 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG----------------------------------------- 306 (340)
T ss_dssp TCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-----------------------------------------
T ss_pred CcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEee-----------------------------------------
Confidence 455689999999999999999999999999998766433
Q ss_pred ceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEc
Q psy15995 394 PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 430 (683)
Q Consensus 394 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~ 430 (683)
.+.+|...|.+++|+|++.+|++|+.|+.|++||
T Consensus 307 ---~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 307 ---VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ---EEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ---EeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 3467999999999999999999999999999997
No 14
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.5e-44 Score=356.65 Aligned_cols=290 Identities=20% Similarity=0.337 Sum_probs=265.4
Q ss_pred cccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEE
Q psy15995 78 SDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIA 157 (683)
Q Consensus 78 ~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 157 (683)
...+.+|.++|++++|+|++++||+|+.||+|+|||+.+++....+..|. ..|.+++|+|++++|+
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~--------------~~V~~v~~~~~~~~l~ 166 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT--------------DSVQDISFDHSGKLLA 166 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCS--------------SCEEEEEECTTSSEEE
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccC--------------CcEEEEEEcCCCCEEE
Confidence 45688999999999999999999999999999999999998888777765 7899999999999999
Q ss_pred eecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeecCCcCeEEEEe
Q psy15995 158 SGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDF 237 (683)
Q Consensus 158 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 237 (683)
+|+.|++|++||+.+++.+ ..+..|...|.+++|+|+++++++++.++. +.+|+..++..+..+.+|...|.++.|
T Consensus 167 sgs~D~~i~iwd~~~~~~~--~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~--i~~wd~~~~~~~~~~~~h~~~v~~~~~ 242 (410)
T 1vyh_C 167 SCSADMTIKLWDFQGFECI--RTMHGHDHNVSSVSIMPNGDHIVSASRDKT--IKMWEVQTGYCVKTFTGHREWVRMVRP 242 (410)
T ss_dssp EEETTSCCCEEETTSSCEE--ECCCCCSSCEEEEEECSSSSEEEEEETTSE--EEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred EEeCCCeEEEEeCCCCcee--EEEcCCCCCEEEEEEeCCCCEEEEEeCCCe--EEEEECCCCcEEEEEeCCCccEEEEEE
Confidence 9999999999999988754 445678899999999999999999887754 789999999999999999999999999
Q ss_pred ecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCC--------------------CCEEEEEcCCCcEE
Q psy15995 238 KPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPS--------------------GSHFASAGFDGKVF 297 (683)
Q Consensus 238 ~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i~ 297 (683)
+|++.. +++++.|++|++||+.+++....+.+|...|.+++|+|+ +.+|++|+.|+.|+
T Consensus 243 ~~~g~~-l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~ 321 (410)
T 1vyh_C 243 NQDGTL-IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321 (410)
T ss_dssp CTTSSE-EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred CCCCCE-EEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEE
Confidence 999995 999999999999999999999999999999999999996 67899999999999
Q ss_pred EEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEE
Q psy15995 298 LYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTV 377 (683)
Q Consensus 298 iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 377 (683)
+||+.++..+..+.. |...|.+++|+|++++|++++.|+.|++||+.+++.+.
T Consensus 322 iwd~~~~~~~~~~~~--h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~------------------------- 374 (410)
T 1vyh_C 322 MWDVSTGMCLMTLVG--HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK------------------------- 374 (410)
T ss_dssp EEETTTTEEEEEEEC--CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCE-------------------------
T ss_pred EEECCCCceEEEEEC--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE-------------------------
Confidence 999999999988875 99999999999999999999999999999998765443
Q ss_pred ecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCC
Q psy15995 378 SLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 432 (683)
Q Consensus 378 ~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~ 432 (683)
.+.+|...|++++|+|++++|++|+.||.|++|+++
T Consensus 375 -------------------~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 375 -------------------TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp -------------------EEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred -------------------EEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 346789999999999999999999999999999863
No 15
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.4e-44 Score=340.90 Aligned_cols=291 Identities=21% Similarity=0.334 Sum_probs=258.1
Q ss_pred ccccccCcccceEEEEECCC----CcEEEEecCCCCEEEEeCCCccccc--ccccccCCCCcccceeeeeecceeeeEee
Q psy15995 77 ISDIYTEHSCAVNVAKYSPS----GFYIASGDISGKVRIWDTVNKEHIL--KNEFHPIGGPIKDIGTLLSLTSIRNILVL 150 (683)
Q Consensus 77 ~~~~~~~h~~~v~~~~~s~d----~~~las~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 150 (683)
..+.+++|.+.|++++|+|+ +++||||+.|++|+|||+.+++... .+..|. ..|.+++++
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~--------------~~v~~~~~~ 89 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQ--------------LGVVSVDIS 89 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCS--------------SCEEEEEEC
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCC--------------CCEEEEEEC
Confidence 34567799999999999985 6799999999999999997765432 333443 679999999
Q ss_pred ccceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeecCCc
Q psy15995 151 SIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSK 230 (683)
Q Consensus 151 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (683)
+++.++++++.|++|++||+.+++.+.. +..+...+.+++|+|+++++++++.++. +.+|+.++++....+..|..
T Consensus 90 ~~~~~l~s~s~D~~i~lWd~~~~~~~~~--~~~~~~~~~~~~~spdg~~l~~g~~dg~--v~i~~~~~~~~~~~~~~~~~ 165 (321)
T 3ow8_A 90 HTLPIAASSSLDAHIRLWDLENGKQIKS--IDAGPVDAWTLAFSPDSQYLATGTHVGK--VNIFGVESGKKEYSLDTRGK 165 (321)
T ss_dssp SSSSEEEEEETTSEEEEEETTTTEEEEE--EECCTTCCCCEEECTTSSEEEEECTTSE--EEEEETTTCSEEEEEECSSS
T ss_pred CCCCEEEEEeCCCcEEEEECCCCCEEEE--EeCCCccEEEEEECCCCCEEEEEcCCCc--EEEEEcCCCceeEEecCCCc
Confidence 9999999999999999999999876543 4455678999999999999999877654 78999999999999999999
Q ss_pred CeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEec
Q psy15995 231 PINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL 310 (683)
Q Consensus 231 ~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 310 (683)
.|.+++|+|++++ |++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++....+
T Consensus 166 ~v~~~~~spdg~~-lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~ 244 (321)
T 3ow8_A 166 FILSIAYSPDGKY-LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL 244 (321)
T ss_dssp CEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred eEEEEEECCCCCE-EEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEE
Confidence 9999999999996 999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred cCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCC
Q psy15995 311 GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNN 390 (683)
Q Consensus 311 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~ 390 (683)
.. |...|.+++|+|++++|++++.|+.|++||+.+++.+..
T Consensus 245 ~~--h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~------------------------------------- 285 (321)
T 3ow8_A 245 SG--HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHT------------------------------------- 285 (321)
T ss_dssp CC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-------------------------------------
T ss_pred cC--CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEE-------------------------------------
Confidence 65 999999999999999999999999999999998766543
Q ss_pred CCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCC
Q psy15995 391 PSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 432 (683)
Q Consensus 391 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~ 432 (683)
+.+|...|.+++|+|++++|++++.||.|++||..
T Consensus 286 -------~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 286 -------FFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp -------ECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred -------EcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 45688999999999999999999999999999963
No 16
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.4e-44 Score=352.62 Aligned_cols=284 Identities=17% Similarity=0.258 Sum_probs=262.2
Q ss_pred ccCCCeEEEeeCCCCCeEEEe-cCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccc
Q psy15995 42 TQRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 120 (683)
Q Consensus 42 ~~~~~~~~~~~s~~~~~l~~~-~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~ 120 (683)
.+.+.+.+++|+|++++|+++ .++.|+|||+++++....+.+|.+.|++++|+|++++||+|+.|++|++||+.+++.+
T Consensus 106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~ 185 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI 185 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE
T ss_pred ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Confidence 356789999999999999988 5899999999999999999999999999999999999999999999999999999888
Q ss_pred cccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeE
Q psy15995 121 LKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRM 200 (683)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 200 (683)
..+..|. ..|.+++|+|++.+|++++.|++|++||+.+++.+. .+..|...|.+++|+|+++++
T Consensus 186 ~~~~~h~--------------~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~--~~~~h~~~v~~~~~~~~g~~l 249 (410)
T 1vyh_C 186 RTMHGHD--------------HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK--TFTGHREWVRMVRPNQDGTLI 249 (410)
T ss_dssp ECCCCCS--------------SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE--EEECCSSCEEEEEECTTSSEE
T ss_pred EEEcCCC--------------CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE--EEeCCCccEEEEEECCCCCEE
Confidence 8777665 679999999999999999999999999999987653 456778999999999999999
Q ss_pred EEEecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecC--------------------CCeEEEEeeCCCeEEEEcCC
Q psy15995 201 VVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPS--------------------RPFRIITGSEDNTIAVFEGP 260 (683)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~~l~~~~~d~~i~iw~~~ 260 (683)
++++.++. +.+|+..+++....+.+|...|.+++|+|+ ++ .+++|+.|+.|++||+.
T Consensus 250 ~s~s~D~~--v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~sgs~D~~i~iwd~~ 326 (410)
T 1vyh_C 250 ASCSNDQT--VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVS 326 (410)
T ss_dssp EEEETTSC--EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETT
T ss_pred EEEcCCCe--EEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCC-EEEEEeCCCeEEEEECC
Confidence 99987765 789999999999999999999999999996 44 59999999999999999
Q ss_pred CCceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcE
Q psy15995 261 PFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTC 340 (683)
Q Consensus 261 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 340 (683)
+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+.. |...|.+++|+|++.+|++++.||.|
T Consensus 327 ~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~sgs~D~~i 404 (410)
T 1vyh_C 327 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA--HEHFVTSLDFHKTAPYVVTGSVDQTV 404 (410)
T ss_dssp TTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC--CSSCEEEEEECSSSSCEEEEETTSEE
T ss_pred CCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcC--CCCcEEEEEEcCCCCEEEEEeCCCcE
Confidence 9999999999999999999999999999999999999999999998888865 99999999999999999999999999
Q ss_pred EEEECC
Q psy15995 341 KLWDIE 346 (683)
Q Consensus 341 ~iwd~~ 346 (683)
++|+++
T Consensus 405 ~vW~~r 410 (410)
T 1vyh_C 405 KVWECR 410 (410)
T ss_dssp EEEC--
T ss_pred EEEeCC
Confidence 999863
No 17
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.1e-43 Score=338.83 Aligned_cols=294 Identities=21% Similarity=0.304 Sum_probs=260.0
Q ss_pred cccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceE
Q psy15995 76 AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFY 155 (683)
Q Consensus 76 ~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 155 (683)
+....+.+|.+.|++++|+||+++||||+.||+|+|||..+++....+..+. ..+.+++|+|+|.+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~--------------~~v~~~~~sp~g~~ 120 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPC--------------TWVMACAYAPSGCA 120 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS--------------SCCCEEEECTTSSE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCC--------------CCEEEEEECCCCCE
Confidence 4456789999999999999999999999999999999999887766655543 67899999999999
Q ss_pred EEeecCCccEEEEeccccce----eeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeecCCcC
Q psy15995 156 IASGDISGKVRIWDTVNKEH----ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKP 231 (683)
Q Consensus 156 l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (683)
|++++.|+.+++|++..... .....+..|.+.|.+++|+|+++.+++++.++. +.+|+.++++.+..+.+|...
T Consensus 121 lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~--v~lwd~~~~~~~~~~~~h~~~ 198 (354)
T 2pbi_B 121 IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT--CALWDVESGQLLQSFHGHGAD 198 (354)
T ss_dssp EEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSE--EEEEETTTCCEEEEEECCSSC
T ss_pred EEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCc--EEEEeCCCCeEEEEEcCCCCC
Confidence 99999999999999865321 122345568899999999999999999887754 789999999999999999999
Q ss_pred eEEEEeecC--CCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEe
Q psy15995 232 INSCDFKPS--RPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 309 (683)
Q Consensus 232 v~~~~~~~~--~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 309 (683)
|.+++|+|+ +. .+++++.||.|++||+++++....+..|...|.+++|+|++++|++++.|++|++||++.++.+..
T Consensus 199 v~~~~~~~~~~g~-~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~ 277 (354)
T 2pbi_B 199 VLCLDLAPSETGN-TFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI 277 (354)
T ss_dssp EEEEEECCCSSCC-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred eEEEEEEeCCCCC-EEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 999999885 45 599999999999999999999999999999999999999999999999999999999999888777
Q ss_pred ccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecC
Q psy15995 310 LGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVN 389 (683)
Q Consensus 310 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~ 389 (683)
+....+...+.+++|+|++++|++++.|+.|++||+.+++.+.
T Consensus 278 ~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~------------------------------------- 320 (354)
T 2pbi_B 278 YSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVS------------------------------------- 320 (354)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEE-------------------------------------
T ss_pred EcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEE-------------------------------------
Confidence 6643455688999999999999999999999999998776543
Q ss_pred CCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEc
Q psy15995 390 NPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 430 (683)
Q Consensus 390 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~ 430 (683)
.+.+|...|++++|+|++++|++|+.|+.|++|+
T Consensus 321 -------~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 321 -------ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp -------EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred -------EEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 3457999999999999999999999999999996
No 18
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.3e-43 Score=335.24 Aligned_cols=286 Identities=20% Similarity=0.320 Sum_probs=257.5
Q ss_pred CcccCCCeEEEeeCCC----CCeEEEe-cCCeEEEEeCCCCcc--cccccCcccceEEEEECCCCcEEEEecCCCCEEEE
Q psy15995 40 PRTQRGQPIVLGGDPK----GKNFLYT-NGNSVIIRNIENPAI--SDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 112 (683)
Q Consensus 40 ~~~~~~~~~~~~~s~~----~~~l~~~-~~~~i~v~~~~~~~~--~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iw 112 (683)
...+.+.+.+++|+|+ +++|+++ .|+.|+|||+.+++. ...+.+|...|.+++|+++++++++++.|++|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lW 107 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLW 107 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 3467889999999985 5678877 689999999987753 44688999999999999999999999999999999
Q ss_pred eCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEE
Q psy15995 113 DTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIA 192 (683)
Q Consensus 113 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~ 192 (683)
|+.+++.+..+..++ ..+.+++|+|++++|++++.||.|++||+.+++... .+..+...+.+++
T Consensus 108 d~~~~~~~~~~~~~~--------------~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~--~~~~~~~~v~~~~ 171 (321)
T 3ow8_A 108 DLENGKQIKSIDAGP--------------VDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY--SLDTRGKFILSIA 171 (321)
T ss_dssp ETTTTEEEEEEECCT--------------TCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEE--EEECSSSCEEEEE
T ss_pred ECCCCCEEEEEeCCC--------------ccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeE--EecCCCceEEEEE
Confidence 999998887776554 567889999999999999999999999999887553 4455668899999
Q ss_pred EcCCCCeEEEEecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccc
Q psy15995 193 WSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS 272 (683)
Q Consensus 193 ~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~ 272 (683)
|+|+++++++++.++. +.+|+..+++.+..+.+|..+|.+++|+|++++ |++++.|+.|++||+++++....+.+|.
T Consensus 172 ~spdg~~lasg~~dg~--i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~h~ 248 (321)
T 3ow8_A 172 YSPDGKYLASGAIDGI--INIFDIATGKLLHTLEGHAMPIRSLTFSPDSQL-LVTASDDGYIKIYDVQHANLAGTLSGHA 248 (321)
T ss_dssp ECTTSSEEEEEETTSC--EEEEETTTTEEEEEECCCSSCCCEEEECTTSCE-EEEECTTSCEEEEETTTCCEEEEECCCS
T ss_pred ECCCCCEEEEEcCCCe--EEEEECCCCcEEEEEcccCCceeEEEEcCCCCE-EEEEcCCCeEEEEECCCcceeEEEcCCC
Confidence 9999999999987764 789999999999999999999999999999995 9999999999999999999999999999
Q ss_pred cCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECC
Q psy15995 273 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIE 346 (683)
Q Consensus 273 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 346 (683)
..|.+++|+|++++|++++.|+.|++||+.+++++..+.. |...|.+++|+|++++|++++.||.|++||..
T Consensus 249 ~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 249 SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD--HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC--CSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcC--CCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999999999999999999999999999999875 99999999999999999999999999999963
No 19
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1e-43 Score=343.13 Aligned_cols=324 Identities=15% Similarity=0.155 Sum_probs=239.6
Q ss_pred EEeeCCCCCeEEEecCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecC------CCCEEEEeCCCcccccc
Q psy15995 49 VLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI------SGKVRIWDTVNKEHILK 122 (683)
Q Consensus 49 ~~~~s~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~------dg~i~iwd~~~~~~~~~ 122 (683)
-+.+.+++.++....+.....|+++...+ ..|+..|++++|||||++||+++. |+.|++|+..++.....
T Consensus 10 g~d~g~~~~~~~~~g~~~~~~w~~p~~~p----~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~ 85 (357)
T 4g56_B 10 GVDLGTENLYFQSNGSSKGSAWGRPVTAP----ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES 85 (357)
T ss_dssp ----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG
T ss_pred CCCCCccceEEecCCCccccccCCCCCCc----ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee
Confidence 35567777777776677889999865443 479999999999999999999997 67799999887755433
Q ss_pred cccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeec--cccccCCCeeEEEEcCCCCeE
Q psy15995 123 NEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKN--EFHPIGGPIKDIAWSPDNQRM 200 (683)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l 200 (683)
+... ...+...|.+++|+|++++| +++.||+|++||+.+++..... ....|...|.+++|+|++++|
T Consensus 86 ~~~~----------~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 154 (357)
T 4g56_B 86 LCTA----------GVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQA 154 (357)
T ss_dssp GCSE----------EEECSSCEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEE
T ss_pred Eecc----------cCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEE
Confidence 3221 12233679999999999765 5677999999999988755433 344678999999999999999
Q ss_pred EEEecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeec--cccccCeEEE
Q psy15995 201 VVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK--QEHSRFVQAV 278 (683)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~--~~~~~~v~~~ 278 (683)
++++.++. +.+|+.++++.+..+.+|...|++++|+|+++.++++++.|+.|++||+++++....+ ..|...+.++
T Consensus 155 ~sgs~dg~--v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v 232 (357)
T 4g56_B 155 VSGGKDFS--VKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSV 232 (357)
T ss_dssp EEEETTSC--EEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEE
T ss_pred EEEeCCCe--EEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccch
Confidence 99887765 7899999999999999999999999999998767999999999999999988876654 4567789999
Q ss_pred EECCCC-CEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCC-CEEEEEECCCcEEEEECCCCceeeEEEe
Q psy15995 279 RYSPSG-SHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDG-TQLLTASGDKTCKLWDIETKSVVSEFIM 356 (683)
Q Consensus 279 ~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 356 (683)
+|+|++ .+|++|+.|+.|++||+++++.+..+.. |...|.+++|+|++ ++|++++.|+.|++||+++++.+.
T Consensus 233 ~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~---- 306 (357)
T 4g56_B 233 TWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV--HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFR---- 306 (357)
T ss_dssp EECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC--CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEE----
T ss_pred hhhhcccceEEEeecccceeEEECCCCcEeEEEec--cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeE----
Confidence 999975 5889999999999999999999888865 99999999999987 578999999999999998776432
Q ss_pred cCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCCC
Q psy15995 357 GNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSP-DRGTVFTGSHDGFITRWNAKTGE 435 (683)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~w~~~~~~ 435 (683)
..+|...|++++|+| ++++|++++.||.|++|++.+..
T Consensus 307 -----------------------------------------~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 307 -----------------------------------------DLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp -----------------------------------------ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred -----------------------------------------ECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 135899999999998 78999999999999999997654
Q ss_pred c
Q psy15995 436 N 436 (683)
Q Consensus 436 ~ 436 (683)
.
T Consensus 346 ~ 346 (357)
T 4g56_B 346 R 346 (357)
T ss_dssp -
T ss_pred c
Confidence 3
No 20
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7.9e-43 Score=335.61 Aligned_cols=295 Identities=17% Similarity=0.288 Sum_probs=251.7
Q ss_pred CceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEE
Q psy15995 262 FKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCK 341 (683)
Q Consensus 262 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 341 (683)
.+....+.+|...|.+++|+|++++|++++.||.|++||..+++.+..+.. |...|.+++|+|++++|++++.|+.++
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~v~ 122 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL--RSSWVMTCAYAPSGNYVACGGLDNICS 122 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC--SSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeec--CCccEEEEEECCCCCEEEEEeCCCeEE
Confidence 345677889999999999999999999999999999999999998888865 899999999999999999999999999
Q ss_pred EEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEe
Q psy15995 342 LWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS 421 (683)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 421 (683)
+|++.+..... .....+.+|...|.++.|++++. +++++
T Consensus 123 iw~~~~~~~~~----------------------------------------~~~~~~~~h~~~v~~~~~~~~~~-l~s~s 161 (340)
T 1got_B 123 IYNLKTREGNV----------------------------------------RVSRELAGHTGYLSCCRFLDDNQ-IVTSS 161 (340)
T ss_dssp EEETTTCSBSC----------------------------------------EEEEEEECCSSCEEEEEEEETTE-EEEEE
T ss_pred EEECccCCCcc----------------------------------------eeEEEecCCCccEEEEEECCCCc-EEEEE
Confidence 99998754211 11244677999999999998864 88999
Q ss_pred CCCcEEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEE
Q psy15995 422 HDGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTV 501 (683)
Q Consensus 422 ~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (683)
.|+.|++||+.+++....+ .+|
T Consensus 162 ~d~~i~~wd~~~~~~~~~~-~~h--------------------------------------------------------- 183 (340)
T 1got_B 162 GDTTCALWDIETGQQTTTF-TGH--------------------------------------------------------- 183 (340)
T ss_dssp TTSCEEEEETTTTEEEEEE-CCC---------------------------------------------------------
T ss_pred CCCcEEEEECCCCcEEEEE-cCC---------------------------------------------------------
Confidence 9999999999887654443 122
Q ss_pred EeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEE
Q psy15995 502 TVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVA 581 (683)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 581 (683)
...+.+++++|+++++++|+.|+.|++||+.++..... ..+|...|++++|+|++++|++
T Consensus 184 -------------------~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~-~~~h~~~v~~v~~~p~~~~l~s 243 (340)
T 1got_B 184 -------------------TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFAT 243 (340)
T ss_dssp -------------------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE-ECCCSSCEEEEEECTTSSEEEE
T ss_pred -------------------CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEE-EcCCcCCEEEEEEcCCCCEEEE
Confidence 23467788999999999999999999999988766533 3468899999999999999999
Q ss_pred EeCCCeEEEEECCCCccccccceeeecccEEEEEecCCCCeEEEeecCCcEEEEeCCCCceeeEeecCCCCCCeeEEEEc
Q psy15995 582 SDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWL 661 (683)
Q Consensus 582 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~~ 661 (683)
++.|++|++||+.+++.........+...|++++|+|++++|++|+.|+.|++||+.+++....+.. |...|++++|+
T Consensus 244 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~--h~~~v~~~~~s 321 (340)
T 1got_B 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG--HDNRVSCLGVT 321 (340)
T ss_dssp EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEEC
T ss_pred EcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeec--CCCcEEEEEEc
Confidence 9999999999999887654433222345799999999999999999999999999999988887765 78999999999
Q ss_pred -cCCeEEEeeCCCcEEEEe
Q psy15995 662 -DNDLLVSVGQDCNTKIWE 679 (683)
Q Consensus 662 -~~~~l~s~~~d~~v~vw~ 679 (683)
++.+|+|++.|+.|++|+
T Consensus 322 ~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 322 DDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEcCCccEEecC
Confidence 778999999999999996
No 21
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.7e-44 Score=352.75 Aligned_cols=317 Identities=19% Similarity=0.302 Sum_probs=269.9
Q ss_pred cCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeec
Q psy15995 63 NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLT 142 (683)
Q Consensus 63 ~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (683)
.+..+..|+..+....++|.+|.+.|++++|+|++++||||+.||+|+|||+.+++....+..|. .
T Consensus 44 ~~~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~--------------~ 109 (380)
T 3iz6_a 44 QGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHC--------------P 109 (380)
T ss_dssp HGGGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCC--------------T
T ss_pred ccccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCC--------------C
Confidence 44556678888888888999999999999999999999999999999999999998887777665 6
Q ss_pred ceeeeEeeccceEEEeecCCccEEEEeccccc-----eeeeccccccCCCeeEEEEcCCC-CeEEEEecCCceEEEEEEc
Q psy15995 143 SIRNILVLSIGFYIASGDISGKVRIWDTVNKE-----HILKNEFHPIGGPIKDIAWSPDN-QRMVVVGEGRERFGHVFMS 216 (683)
Q Consensus 143 ~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~~~~~~~~~~ 216 (683)
.|.+++|+|+|++||+++.|+.+++||+.+.. ......+.+|.+.+.++.|+|++ ..+++++.++. +.+|+.
T Consensus 110 ~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~--i~~wd~ 187 (380)
T 3iz6_a 110 WVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT--CVLWDV 187 (380)
T ss_dssp TCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSC--EEEECT
T ss_pred CEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCc--EEEEEc
Confidence 78999999999999999999999999997532 22234466788999999999975 45777766544 789999
Q ss_pred cCCCceeee-----ecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCC-CCceeeeccccccCeEEEEECCCCCEEEEE
Q psy15995 217 ETGTSVGEI-----SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP-PFKFKMTKQEHSRFVQAVRYSPSGSHFASA 290 (683)
Q Consensus 217 ~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 290 (683)
.+++.+..+ .+|...|.+++|++.+...+++|+.|++|++||++ ..+....+.+|...|.+++|+|++++|+++
T Consensus 188 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~ 267 (380)
T 3iz6_a 188 TTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTG 267 (380)
T ss_dssp TTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEE
T ss_pred CCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEE
Confidence 999888776 67999999999988444469999999999999987 557778889999999999999999999999
Q ss_pred cCCCcEEEEeCCCCeeEEeccCCc-----cccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceE
Q psy15995 291 GFDGKVFLYDGASADLVSELGNPA-----HKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQV 365 (683)
Q Consensus 291 ~~dg~i~iw~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (683)
+.||+|++||+++++.+..+.... +...|.+++|+|++++|++++.||.|++||+..++....+.
T Consensus 268 s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~---------- 337 (380)
T 3iz6_a 268 SDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLG---------- 337 (380)
T ss_dssp CSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEEC----------
T ss_pred cCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEe----------
Confidence 999999999999999887765421 22348999999999999999999999999998877654431
Q ss_pred EEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCC
Q psy15995 366 SCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGE 435 (683)
Q Consensus 366 ~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~ 435 (683)
....+|...|++++|+|++++|++|+.|+.|++|++...+
T Consensus 338 ------------------------------~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 338 ------------------------------TLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp ------------------------------CSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred ------------------------------cccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 1124689999999999999999999999999999987654
No 22
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.6e-42 Score=326.25 Aligned_cols=292 Identities=16% Similarity=0.215 Sum_probs=247.6
Q ss_pred ceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEE
Q psy15995 263 KFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKL 342 (683)
Q Consensus 263 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 342 (683)
+....+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.+..+.. |..+|.+++|+|++++|++++.|+.|++
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~s~d~~i~v 81 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQV--TETPVRAGKFIARKNWIIVGSDDFRIRV 81 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC--CSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeec--cCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence 44667889999999999999999999999999999999999999888875 8999999999999999999999999999
Q ss_pred EECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeC
Q psy15995 343 WDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSH 422 (683)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 422 (683)
||+.+++.+. .+.+|...|.+++|+|++++|++++.
T Consensus 82 wd~~~~~~~~--------------------------------------------~~~~h~~~v~~~~~~~~~~~l~sgs~ 117 (304)
T 2ynn_A 82 FNYNTGEKVV--------------------------------------------DFEAHPDYIRSIAVHPTKPYVLSGSD 117 (304)
T ss_dssp EETTTCCEEE--------------------------------------------EEECCSSCEEEEEECSSSSEEEEEET
T ss_pred EECCCCcEEE--------------------------------------------EEeCCCCcEEEEEEcCCCCEEEEECC
Confidence 9999876543 34679999999999999999999999
Q ss_pred CCcEEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEE
Q psy15995 423 DGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVT 502 (683)
Q Consensus 423 dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (683)
|+.|++||++++........+|.
T Consensus 118 D~~v~lWd~~~~~~~~~~~~~h~--------------------------------------------------------- 140 (304)
T 2ynn_A 118 DLTVKLWNWENNWALEQTFEGHE--------------------------------------------------------- 140 (304)
T ss_dssp TSCEEEEEGGGTTEEEEEECCCC---------------------------------------------------------
T ss_pred CCeEEEEECCCCcchhhhhcccC---------------------------------------------------------
Confidence 99999999876543322222222
Q ss_pred eceEEEEeCCceeeeecCCCCCcEEEEcc-CCCEEEEEcCCCcEEEEEcCCCccCcceeecCCcCeeEEEECC--CCCEE
Q psy15995 503 VKQISIVENGAKVSSLPIDYEPSSISLDH-EHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSP--SNEYL 579 (683)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l 579 (683)
..+.+++|+| ++.+|++|+.|+.|++||+...........++...+..++|+| ++++|
T Consensus 141 -------------------~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 201 (304)
T 2ynn_A 141 -------------------HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM 201 (304)
T ss_dssp -------------------SCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEE
T ss_pred -------------------CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEE
Confidence 3467788888 5788999999999999999877666555556778899999987 78899
Q ss_pred EEEeCCCeEEEEECCCCccccccceeeecccEEEEEecCCCCeEEEeecCCcEEEEeCCCCceeeEeecCCCCCCeeEEE
Q psy15995 580 VASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQ 659 (683)
Q Consensus 580 ~~~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~l~ 659 (683)
++++.|++|++||+.+++.+.. +.+|...|.+++|+|++++|++|+.||+|++||+.+++....+.. |...+.+++
T Consensus 202 ~s~s~D~~i~iWd~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~--~~~~~~~~~ 277 (304)
T 2ynn_A 202 ITASDDLTIKIWDYQTKSCVAT--LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV--GLERSWCIA 277 (304)
T ss_dssp EEEETTSEEEEEETTTTEEEEE--EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC--SSSSEEEEE
T ss_pred EEEcCCCeEEEEeCCCCcccee--eCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccC--CCccEEEEE
Confidence 9999999999999999887643 445999999999999999999999999999999999998888865 678999999
Q ss_pred Ec-cCC--eEEEeeCCCcEEEEeec
Q psy15995 660 WL-DND--LLVSVGQDCNTKIWEIA 681 (683)
Q Consensus 660 ~~-~~~--~l~s~~~d~~v~vw~~~ 681 (683)
|. ++. ++++++.|| +.+|++.
T Consensus 278 ~~~~~~~~~~asg~~~g-~~~~~~~ 301 (304)
T 2ynn_A 278 THPTGRKNYIASGFDNG-FTVLSLG 301 (304)
T ss_dssp ECTTCGGGCEEEEETTE-EEEEECC
T ss_pred ECCCCCceEEEEecCCc-eEEEEec
Confidence 88 443 466666555 7778765
No 23
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.2e-42 Score=325.61 Aligned_cols=293 Identities=18% Similarity=0.258 Sum_probs=253.1
Q ss_pred cccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceE
Q psy15995 76 AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFY 155 (683)
Q Consensus 76 ~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 155 (683)
+..++|.+|.+.|++++|+||+++||+++.||+|++||+.+++.+..+..+. ..+.+++|+|++++
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~ 69 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTE--------------TPVRAGKFIARKNW 69 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCS--------------SCEEEEEEEGGGTE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccC--------------CcEEEEEEeCCCCE
Confidence 4456789999999999999999999999999999999999998887776665 67899999999999
Q ss_pred EEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCC-ceeeeecCCcCeEE
Q psy15995 156 IASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGT-SVGEISGQSKPINS 234 (683)
Q Consensus 156 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~ 234 (683)
|++|+.|++|++||+.+++.+ ..+..|...|.+++|+|+++++++++.++. +.+|+++++. ....+.+|...|.+
T Consensus 70 l~s~s~d~~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~--v~lWd~~~~~~~~~~~~~h~~~v~~ 145 (304)
T 2ynn_A 70 IIVGSDDFRIRVFNYNTGEKV--VDFEAHPDYIRSIAVHPTKPYVLSGSDDLT--VKLWNWENNWALEQTFEGHEHFVMC 145 (304)
T ss_dssp EEEEETTSEEEEEETTTCCEE--EEEECCSSCEEEEEECSSSSEEEEEETTSC--EEEEEGGGTTEEEEEECCCCSCEEE
T ss_pred EEEECCCCEEEEEECCCCcEE--EEEeCCCCcEEEEEEcCCCCEEEEECCCCe--EEEEECCCCcchhhhhcccCCcEEE
Confidence 999999999999999998865 345678899999999999999999887765 7899998874 45678899999999
Q ss_pred EEeecCCCeEEEEeeCCCeEEEEcCCCCceeeecc-ccccCeEEEEECC--CCCEEEEEcCCCcEEEEeCCCCeeEEecc
Q psy15995 235 CDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ-EHSRFVQAVRYSP--SGSHFASAGFDGKVFLYDGASADLVSELG 311 (683)
Q Consensus 235 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 311 (683)
++|+|.+...+++++.|++|++||+...+....+. +|...+..+.|+| ++++|++++.|+.|++||+++++++..+.
T Consensus 146 v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~ 225 (304)
T 2ynn_A 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225 (304)
T ss_dssp EEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeC
Confidence 99999654469999999999999998777655554 5667899999987 67899999999999999999999999987
Q ss_pred CCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCC
Q psy15995 312 NPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNP 391 (683)
Q Consensus 312 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~ 391 (683)
. |...|.+++|+|++++|++++.||.|++||+.+++....
T Consensus 226 ~--h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~-------------------------------------- 265 (304)
T 2ynn_A 226 G--HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT-------------------------------------- 265 (304)
T ss_dssp C--CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE--------------------------------------
T ss_pred C--CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeee--------------------------------------
Confidence 6 999999999999999999999999999999998776544
Q ss_pred CcceeeeeeccccEEEEEEeCCCC--EEEEEeCCCcEEEEcCCC
Q psy15995 392 STPIRVIKGHNKPITALALSPDRG--TVFTGSHDGFITRWNAKT 433 (683)
Q Consensus 392 ~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~w~~~~ 433 (683)
+..|...+.+++++|++. ++++|+.|| +.+|++..
T Consensus 266 ------~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 266 ------LNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp ------ECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred ------ccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 345778899999999875 477776554 77777654
No 24
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.7e-42 Score=329.77 Aligned_cols=311 Identities=14% Similarity=0.093 Sum_probs=244.0
Q ss_pred EEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeee
Q psy15995 68 IIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNI 147 (683)
Q Consensus 68 ~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 147 (683)
+.|++..... ..|...|.+++|+|||++|++++ |+++++||............+ ..........+...|.++
T Consensus 17 r~w~~~~~~~----~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~ 88 (344)
T 4gqb_B 17 REWNLPPNAP----ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAP---NEGFCSAGVQTEAGVADL 88 (344)
T ss_dssp ------CCSC----SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTT---CGGGCSEEEEESSCEEEE
T ss_pred cccCCCCCCc----ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccC---CcceeeeeeccCCCEEEE
Confidence 5677655433 35777899999999999999887 778999974321100000000 000111223344679999
Q ss_pred EeeccceEEEeecCCccEEEEeccccceeee--ccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeee
Q psy15995 148 LVLSIGFYIASGDISGKVRIWDTVNKEHILK--NEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEI 225 (683)
Q Consensus 148 ~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (683)
+|+|++ .|++++.||+|+|||+.+++.+.. ....+|.+.|.+++|+|++++|++++.++. +.+|+.++++.+..+
T Consensus 89 ~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~--i~iwd~~~~~~~~~~ 165 (344)
T 4gqb_B 89 TWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDIC--IKVWDLAQQVVLSSY 165 (344)
T ss_dssp EEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSC--EEEEETTTTEEEEEE
T ss_pred EEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCe--EEEEECCCCcEEEEE
Confidence 999996 677999999999999999876543 335578899999999999999999987765 799999999999999
Q ss_pred ecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeecc--ccccCeEEEEECCC-CCEEEEEcCCCcEEEEeCC
Q psy15995 226 SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ--EHSRFVQAVRYSPS-GSHFASAGFDGKVFLYDGA 302 (683)
Q Consensus 226 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~ 302 (683)
.+|...|.+++|+|++..++++++.|++|++||+++++....+. .|...+.+++|+|+ +++|++|+.||.|++||++
T Consensus 166 ~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~ 245 (344)
T 4gqb_B 166 RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK 245 (344)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence 99999999999999997678999999999999999998877764 45667999999995 5688999999999999999
Q ss_pred CCeeEEeccCCccccCeEEEEEccCC-CEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCC
Q psy15995 303 SADLVSELGNPAHKGGVYAVAWKPDG-TQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSG 381 (683)
Q Consensus 303 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 381 (683)
+++.+..+.. |...|.+++|+|++ ++|++++.|+.|++||+++++..
T Consensus 246 ~~~~~~~~~~--h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~------------------------------ 293 (344)
T 4gqb_B 246 STSCVLSSAV--HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF------------------------------ 293 (344)
T ss_dssp C--CCEEEEC--CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE------------------------------
T ss_pred CCcEEEEEcC--CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE------------------------------
Confidence 9999988876 99999999999997 57899999999999999876532
Q ss_pred cEEEEecCCCCcceeeeeeccccEEEEEEeCCCC-EEEEEeCCCcEEEEcCCCCCc
Q psy15995 382 FISYLDVNNPSTPIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNAKTGEN 436 (683)
Q Consensus 382 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~w~~~~~~~ 436 (683)
.+.+|.+.|++++|+|+++ +|++++.|++|++|++.+...
T Consensus 294 ---------------~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 294 ---------------RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp ---------------EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred ---------------EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 2357999999999999986 567899999999999987543
No 25
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.9e-42 Score=334.40 Aligned_cols=294 Identities=19% Similarity=0.253 Sum_probs=235.8
Q ss_pred CCcccCCCeEEEeeCCCCCeEEEec-------CCeEEEEeCCCCccccc----ccCcccceEEEEECCCCcEEEEecCCC
Q psy15995 39 LPRTQRGQPIVLGGDPKGKNFLYTN-------GNSVIIRNIENPAISDI----YTEHSCAVNVAKYSPSGFYIASGDISG 107 (683)
Q Consensus 39 ~~~~~~~~~~~~~~s~~~~~l~~~~-------~~~i~v~~~~~~~~~~~----~~~h~~~v~~~~~s~d~~~las~~~dg 107 (683)
.|..++..+.+++|||||++||+++ ++.|.+|+..++..... ..+|...|++++|+|++++| +++.||
T Consensus 37 ~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~dg 115 (357)
T 4g56_B 37 APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASDSG 115 (357)
T ss_dssp ---CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEETTS
T ss_pred CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEECCC
Confidence 3556788999999999999999985 57899999887765433 34789999999999998655 567899
Q ss_pred CEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCCC
Q psy15995 108 KVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGP 187 (683)
Q Consensus 108 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 187 (683)
+|+|||+.+++......... ..+...|.+++|+|++++|++++.|+.|++||+.+++.+. .+..|...
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~----------~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~--~~~~h~~~ 183 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAK----------YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLK--SYNAHSSE 183 (357)
T ss_dssp CEEEC--------CCCCEEE----------CCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEE--EECCCSSC
T ss_pred EEEEeeccccceeEEEeecc----------CCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE--EEcCCCCC
Confidence 99999999886554433211 1123679999999999999999999999999999987654 45667899
Q ss_pred eeEEEEcCCCC-eEEEEecCCceEEEEEEccCCCceeeee--cCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCce
Q psy15995 188 IKDIAWSPDNQ-RMVVVGEGRERFGHVFMSETGTSVGEIS--GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF 264 (683)
Q Consensus 188 i~~~~~s~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~ 264 (683)
|.+++|+|++. .+++++.++. +.+|+.++++....+. .|...+.+++|+|++..++++|+.|+.|++||+++++.
T Consensus 184 v~~v~~s~~~~~~~~s~~~dg~--v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~ 261 (357)
T 4g56_B 184 VNCVAACPGKDTIFLSCGEDGR--ILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS 261 (357)
T ss_dssp EEEEEECTTCSSCEEEEETTSC--EEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG
T ss_pred EEEEEEccCCCceeeeeccCCc--eEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE
Confidence 99999999986 5666665543 7888888888776654 56778999999998776799999999999999999999
Q ss_pred eeeccccccCeEEEEECCCC-CEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEcc-CCCEEEEEECCCcEEE
Q psy15995 265 KMTKQEHSRFVQAVRYSPSG-SHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKP-DGTQLLTASGDKTCKL 342 (683)
Q Consensus 265 ~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i 342 (683)
...+.+|...|++++|+|++ ++|++++.|++|++||+++++.+..+. |...|.+++|+| ++++|++++.||.|++
T Consensus 262 ~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~---H~~~V~~vafsP~d~~~l~s~s~Dg~v~i 338 (357)
T 4g56_B 262 AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS---HRDFVTGVAWSPLDHSKFTTVGWDHKVLH 338 (357)
T ss_dssp CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECC---CSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECC---CCCCEEEEEEeCCCCCEEEEEcCCCeEEE
Confidence 99999999999999999987 578999999999999999998887763 999999999998 7999999999999999
Q ss_pred EECCCCce
Q psy15995 343 WDIETKSV 350 (683)
Q Consensus 343 wd~~~~~~ 350 (683)
|++.....
T Consensus 339 W~~~~~~~ 346 (357)
T 4g56_B 339 HHLPSEGR 346 (357)
T ss_dssp EECC----
T ss_pred EECCCCCc
Confidence 99976543
No 26
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6e-42 Score=330.70 Aligned_cols=297 Identities=18% Similarity=0.275 Sum_probs=249.4
Q ss_pred ceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEE
Q psy15995 263 KFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKL 342 (683)
Q Consensus 263 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 342 (683)
+....+.+|...|.+++|+|++++|++++.||+|++||..+++....+.. |...|.+++|+|+++.+++++.|+.+++
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~--~~~~v~~~~~sp~g~~lasg~~d~~i~v 132 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM--PCTWVMACAYAPSGCAIACGGLDNKCSV 132 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--SSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEec--CCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence 45667889999999999999999999999999999999999988888765 8889999999999999999999999999
Q ss_pred EECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeC
Q psy15995 343 WDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSH 422 (683)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 422 (683)
|++....... .......+.+|...|.+++|+|++..|++++.
T Consensus 133 ~~~~~~~~~~--------------------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~ 174 (354)
T 2pbi_B 133 YPLTFDKNEN--------------------------------------MAAKKKSVAMHTNYLSACSFTNSDMQILTASG 174 (354)
T ss_dssp EECCCCTTCC--------------------------------------SGGGCEEEEECSSCEEEEEECSSSSEEEEEET
T ss_pred EEEecccccc--------------------------------------ccccceeeeccCCcEEEEEEeCCCCEEEEEeC
Confidence 9987543110 01223456789999999999999999999999
Q ss_pred CCcEEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEE
Q psy15995 423 DGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVT 502 (683)
Q Consensus 423 dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (683)
|++|++||+.+++....+ .+|..
T Consensus 175 D~~v~lwd~~~~~~~~~~-~~h~~-------------------------------------------------------- 197 (354)
T 2pbi_B 175 DGTCALWDVESGQLLQSF-HGHGA-------------------------------------------------------- 197 (354)
T ss_dssp TSEEEEEETTTCCEEEEE-ECCSS--------------------------------------------------------
T ss_pred CCcEEEEeCCCCeEEEEE-cCCCC--------------------------------------------------------
Confidence 999999999887765444 22333
Q ss_pred eceEEEEeCCceeeeecCCCCCcEEEEcc--CCCEEEEEcCCCcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEE
Q psy15995 503 VKQISIVENGAKVSSLPIDYEPSSISLDH--EHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLV 580 (683)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 580 (683)
.+.+++++| ++++|++|+.||.|++||+.+++.... ...|...|++++|+|++++|+
T Consensus 198 --------------------~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~-~~~h~~~v~~v~~~p~~~~l~ 256 (354)
T 2pbi_B 198 --------------------DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA-FETHESDVNSVRYYPSGDAFA 256 (354)
T ss_dssp --------------------CEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEE-ECCCSSCEEEEEECTTSSEEE
T ss_pred --------------------CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCCeEEEEEeCCCCEEE
Confidence 345556655 567899999999999999988876533 345889999999999999999
Q ss_pred EEeCCCeEEEEECCCCccccccceeeecccEEEEEecCCCCeEEEeecCCcEEEEeCCCCceeeEeecCCCCCCeeEEEE
Q psy15995 581 ASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQW 660 (683)
Q Consensus 581 ~~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~ 660 (683)
+++.|++|++||+.+++.........+...+++++|+|++++|++++.|+.|++||+.+++....+.. |...|++++|
T Consensus 257 s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~--h~~~v~~l~~ 334 (354)
T 2pbi_B 257 SGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG--HENRVSTLRV 334 (354)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECC--CSSCEEEEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEEC--CCCcEEEEEE
Confidence 99999999999999876554332222345789999999999999999999999999999988877755 7899999999
Q ss_pred c-cCCeEEEeeCCCcEEEEe
Q psy15995 661 L-DNDLLVSVGQDCNTKIWE 679 (683)
Q Consensus 661 ~-~~~~l~s~~~d~~v~vw~ 679 (683)
+ ++++|++++.|+.|++|+
T Consensus 335 spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 335 SPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CTTSSCEEEEETTSEEEEEC
T ss_pred CCCCCEEEEEcCCCCEEecC
Confidence 9 778999999999999996
No 27
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-42 Score=334.20 Aligned_cols=314 Identities=19% Similarity=0.330 Sum_probs=250.7
Q ss_pred cccccccCccc-ceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccce
Q psy15995 76 AISDIYTEHSC-AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGF 154 (683)
Q Consensus 76 ~~~~~~~~h~~-~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 154 (683)
+++.++.+|.. .|.+++|+|||++||+|+.|++|+|||+.+++........ ..+...|.+++|+|+++
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~-----------~~h~~~v~~~~~sp~g~ 74 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS-----------EGHQRTVRKVAWSPCGN 74 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEEC-----------SSCSSCEEEEEECTTSS
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeec-----------cccCCcEEEEEECCCCC
Confidence 45677889988 9999999999999999999999999999877543221110 01226799999999999
Q ss_pred EEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCC---ceeeeecCCcC
Q psy15995 155 YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGT---SVGEISGQSKP 231 (683)
Q Consensus 155 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 231 (683)
+||+++.|+++++||+..+.......+.+|...|.+++|+|++++|++++.++. +.+|+.+.+. .+..+.+|...
T Consensus 75 ~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~--v~iwd~~~~~~~~~~~~~~~h~~~ 152 (345)
T 3fm0_A 75 YLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKS--VWVWEVDEEDEYECVSVLNSHTQD 152 (345)
T ss_dssp EEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC--EEEEEECTTSCEEEEEEECCCCSC
T ss_pred EEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCe--EEEEECCCCCCeEEEEEecCcCCC
Confidence 999999999999999988765455667788999999999999999999988764 7888887654 35667899999
Q ss_pred eEEEEeecCCCeEEEEeeCCCeEEEEcCCCCc--eeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCC-----
Q psy15995 232 INSCDFKPSRPFRIITGSEDNTIAVFEGPPFK--FKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASA----- 304 (683)
Q Consensus 232 v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----- 304 (683)
|.+++|+|++++ |++++.|+.|++||...++ ....+.+|...|.+++|+|++++|++++.|++|++|+....
T Consensus 153 v~~~~~~p~~~~-l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~ 231 (345)
T 3fm0_A 153 VKHVVWHPSQEL-LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQG 231 (345)
T ss_dssp EEEEEECSSSSC-EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTC
T ss_pred eEEEEECCCCCE-EEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCcc
Confidence 999999999995 9999999999999988775 44678899999999999999999999999999999986321
Q ss_pred ----------eeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEE
Q psy15995 305 ----------DLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYL 374 (683)
Q Consensus 305 ----------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 374 (683)
+++..+.. .|...|.+++|+|++..|++++.|+.+++|+...+...... ..
T Consensus 232 ~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~---------~~--------- 292 (345)
T 3fm0_A 232 VACSGSDPSWKCICTLSG-FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQP---------TF--------- 292 (345)
T ss_dssp CCCC---CEEEEEEEECS-SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSC---------CE---------
T ss_pred ceeeccCCccceeEEecC-CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCccee---------eE---------
Confidence 22233321 37889999999999999999999999999998765321100 00
Q ss_pred EEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCC-CEEEEEeCCCcEEEEcCCCCCccee
Q psy15995 375 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDR-GTVFTGSHDGFITRWNAKTGENDRV 439 (683)
Q Consensus 375 ~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~ 439 (683)
........+|...|++++|+|++ .+|++++.||.|++|++.+.+....
T Consensus 293 -----------------~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 293 -----------------SLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp -----------------EEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC------
T ss_pred -----------------EEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence 00012235789999999999987 5999999999999999988775443
No 28
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=7.6e-42 Score=329.22 Aligned_cols=307 Identities=21% Similarity=0.332 Sum_probs=238.9
Q ss_pred CceeeeecCCc-CeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCcee---eeccccccCeEEEEECCCCCEEEEEcCCCc
Q psy15995 220 TSVGEISGQSK-PINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK---MTKQEHSRFVQAVRYSPSGSHFASAGFDGK 295 (683)
Q Consensus 220 ~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 295 (683)
+.+..+.+|.. .|.+++|+|+++. |++++.|++|++||..+++.. ....+|...|.+++|+|++++|++++.|+.
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~-las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTL-LASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSC-EEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEeeeecCCCCCcEEEEEECCCCCE-EEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 35667889988 9999999999995 999999999999998877543 233689999999999999999999999999
Q ss_pred EEEEeCCCCe--eEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCE
Q psy15995 296 VFLYDGASAD--LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDY 373 (683)
Q Consensus 296 i~iw~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (683)
+++|+...+. .+..+.. |...|.+++|+|++++|++++.|+.|++||+..+.....
T Consensus 85 v~iw~~~~~~~~~~~~~~~--h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~-------------------- 142 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEG--HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC-------------------- 142 (345)
T ss_dssp EEEEEECCC-EEEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEE--------------------
T ss_pred EEEEEccCCCeEEEEEccC--CCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEE--------------------
Confidence 9999988764 4555544 999999999999999999999999999999987643211
Q ss_pred EEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCccee-ccCCCCcceeEEE
Q psy15995 374 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRV-QGAGHGNQINGMK 452 (683)
Q Consensus 374 l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~-~~~~~~~~v~~~~ 452 (683)
+..+.+|...|.+++|+|++++|++++.|+.|++||..+++.... ...+|
T Consensus 143 ---------------------~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h-------- 193 (345)
T 3fm0_A 143 ---------------------VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH-------- 193 (345)
T ss_dssp ---------------------EEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCC--------
T ss_pred ---------------------EEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC--------
Confidence 234567899999999999999999999999999999765532211 11222
Q ss_pred EeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccC
Q psy15995 453 ATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHE 532 (683)
Q Consensus 453 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (683)
...+.+++|+|+
T Consensus 194 --------------------------------------------------------------------~~~v~~l~~sp~ 205 (345)
T 3fm0_A 194 --------------------------------------------------------------------ESTVWSLAFDPS 205 (345)
T ss_dssp --------------------------------------------------------------------SSCEEEEEECTT
T ss_pred --------------------------------------------------------------------CCceEEEEECCC
Confidence 234667778888
Q ss_pred CCEEEEEcCCCcEEEEEcCCCccC---------------cceeecCCcCeeEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q psy15995 533 HGLVAVGGADSKVHIYELNNKSLS---------------PKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 597 (683)
Q Consensus 533 ~~~l~~~~~dg~i~i~d~~~~~~~---------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~ 597 (683)
+++|++++.|++|++|+....... ......|...|.+++|+|++..|++++.|+.|++|+.....
T Consensus 206 g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 206 GQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp SSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred CCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 888888888888888876322111 01111277889999999999999999999999999987653
Q ss_pred ccccc-------ceeeecccEEEEEecCCC-CeEEEeecCCcEEEEeCCCCceeeEe
Q psy15995 598 LAHNK-------EWGFHSAKVNCVAWSPDS-ALVASGSLDTTIIIWSLASPAKHIII 646 (683)
Q Consensus 598 ~~~~~-------~~~~h~~~v~~~~~s~d~-~~l~~~~~d~~v~iw~~~~~~~~~~~ 646 (683)
..... ...+|...|++++|+|++ .+||+++.||+|++|++.+++.....
T Consensus 286 ~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 286 DPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp CTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred CcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 21111 112488999999999997 59999999999999999988765544
No 29
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.2e-43 Score=342.99 Aligned_cols=319 Identities=19% Similarity=0.296 Sum_probs=260.8
Q ss_pred eEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEE
Q psy15995 253 TIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLL 332 (683)
Q Consensus 253 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 332 (683)
.+..|+..+......+.+|...|++++|+|++++|++|+.||+|++||..+++....+.. |...|.+++|+|++++|+
T Consensus 47 ~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~--h~~~v~~~~~s~~g~~la 124 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL--HCPWVMECAFAPNGQSVA 124 (380)
T ss_dssp GCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC--CCTTCCCCEECTTSSEEE
T ss_pred cccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEec--CCCCEEEEEECCCCCEEE
Confidence 344567677778888999999999999999999999999999999999999999888876 999999999999999999
Q ss_pred EEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeC
Q psy15995 333 TASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSP 412 (683)
Q Consensus 333 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 412 (683)
+++.|+.+++||+.+..... ........+.+|...+.++.|.|
T Consensus 125 s~~~d~~v~iw~~~~~~~~~-------------------------------------~~~~~~~~~~gh~~~v~~~~~~~ 167 (380)
T 3iz6_a 125 CGGLDSACSIFNLSSQADRD-------------------------------------GNMPVSRVLTGHKGYASSCQYVP 167 (380)
T ss_dssp ECCSSSCCEEEECCCCSSCC-------------------------------------CSSTTCCBCCCCSSCCCCCBCCS
T ss_pred EeeCCCcEEEEECCCCcccc-------------------------------------CCccceeeccCCCcceEEEEEec
Confidence 99999999999997643210 00223355778999999999999
Q ss_pred CC-CEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCcee
Q psy15995 413 DR-GTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGL 491 (683)
Q Consensus 413 ~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~ 491 (683)
++ ..|++++.|+.|++||+.+++....+....
T Consensus 168 ~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~----------------------------------------------- 200 (380)
T 3iz6_a 168 DQETRLITGSGDQTCVLWDVTTGQRISIFGSEF----------------------------------------------- 200 (380)
T ss_dssp SSSSCEEEECTTSCEEEECTTTCCEEEEECCCS-----------------------------------------------
T ss_pred CCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc-----------------------------------------------
Confidence 74 579999999999999999887654432100
Q ss_pred eecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEcc-CCCEEEEEcCCCcEEEEEcCCCccCcceeecCCcCeeEE
Q psy15995 492 DIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDH-EHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDC 570 (683)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 570 (683)
...+...+.++++++ ++.++++|+.|+.|++||+...........+|...|+++
T Consensus 201 -------------------------~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v 255 (380)
T 3iz6_a 201 -------------------------PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSV 255 (380)
T ss_dssp -------------------------SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEE
T ss_pred -------------------------CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEE
Confidence 001223456677765 788999999999999999985543334455799999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEECCCCcccccccee-----eecccEEEEEecCCCCeEEEeecCCcEEEEeCCCCceeeE
Q psy15995 571 SFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWG-----FHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHII 645 (683)
Q Consensus 571 ~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~-----~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~~~~~~ 645 (683)
+|+|++++|++++.|++|++||+.+++........ .+...|++++|+|+|++|++|+.||.|++||+..++....
T Consensus 256 ~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~ 335 (380)
T 3iz6_a 256 KFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLN 335 (380)
T ss_dssp EECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEE
T ss_pred EEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEE
Confidence 99999999999999999999999998765433221 1223589999999999999999999999999999887766
Q ss_pred eec--CCCCCCeeEEEEc-cCCeEEEeeCCCcEEEEeecc
Q psy15995 646 IKN--AHPQSQITRLQWL-DNDLLVSVGQDCNTKIWEIAP 682 (683)
Q Consensus 646 ~~~--~~~~~~v~~l~~~-~~~~l~s~~~d~~v~vw~~~~ 682 (683)
+.. ..|.+.|++++|+ ++.+|+|++.|+.|++|+++.
T Consensus 336 ~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 336 LGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp ECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred EecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 621 3478999999999 788999999999999999864
No 30
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.5e-42 Score=327.58 Aligned_cols=300 Identities=18% Similarity=0.301 Sum_probs=253.5
Q ss_pred cccccccCcccceEEEEECCCC-cEEEEecCCCCEEEEeCCCcc-----cccccccccCCCCcccceeeeeecceeeeEe
Q psy15995 76 AISDIYTEHSCAVNVAKYSPSG-FYIASGDISGKVRIWDTVNKE-----HILKNEFHPIGGPIKDIGTLLSLTSIRNILV 149 (683)
Q Consensus 76 ~~~~~~~~h~~~v~~~~~s~d~-~~las~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 149 (683)
.+..+|.+|.+.|++++|+|++ ++|++|+.|++|++||+.... .+..+..|. ..|.+++|
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~--------------~~v~~~~~ 73 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS--------------HIVQDCTL 73 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCS--------------SCEEEEEE
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCc--------------ccEEEEEE
Confidence 3456789999999999999965 899999999999999986542 233333343 77999999
Q ss_pred eccceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeecCC
Q psy15995 150 LSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQS 229 (683)
Q Consensus 150 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (683)
+|++++|++++.|++|++||+.+++.+ ..+.+|...|.+++|+|+++++++++.++. +.+|+.+ +..+..+.+|.
T Consensus 74 s~dg~~l~s~s~D~~v~~wd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~--i~vwd~~-~~~~~~~~~h~ 148 (319)
T 3frx_A 74 TADGAYALSASWDKTLRLWDVATGETY--QRFVGHKSDVMSVDIDKKASMIISGSRDKT--IKVWTIK-GQCLATLLGHN 148 (319)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEE--EEEECCSSCEEEEEECTTSCEEEEEETTSC--EEEEETT-SCEEEEECCCS
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCCee--EEEccCCCcEEEEEEcCCCCEEEEEeCCCe--EEEEECC-CCeEEEEeccC
Confidence 999999999999999999999998855 445678899999999999999999988764 7888875 56778889999
Q ss_pred cCeEEEEeecCCC-----eEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCC
Q psy15995 230 KPINSCDFKPSRP-----FRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASA 304 (683)
Q Consensus 230 ~~v~~~~~~~~~~-----~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 304 (683)
..|.++.|.|... ..+++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++++.||.|++||+.++
T Consensus 149 ~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~ 228 (319)
T 3frx_A 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228 (319)
T ss_dssp SCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 9999999999643 25999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEE
Q psy15995 305 DLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFIS 384 (683)
Q Consensus 305 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~ 384 (683)
+.+..+. +...|.+++|+|++.++++++.+ .+++|++.....+..+...
T Consensus 229 ~~~~~~~---~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~--------------------------- 277 (319)
T 3frx_A 229 KAMYTLS---AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPE--------------------------- 277 (319)
T ss_dssp EEEEEEE---CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCC---------------------------
T ss_pred cEEEEec---CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCcc---------------------------
Confidence 9988886 45689999999999999888765 5999999876654443111
Q ss_pred EEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC
Q psy15995 385 YLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTG 434 (683)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~ 434 (683)
.......|...+.+++|+|+|++|++|+.||.|++||+.++
T Consensus 278 ---------~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 278 ---------FAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp ---------CTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred ---------ccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 00112346778999999999999999999999999998653
No 31
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7.1e-42 Score=325.47 Aligned_cols=293 Identities=20% Similarity=0.337 Sum_probs=243.6
Q ss_pred ceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCC-----CceeeeccccccCeEEEEECCCCCEEEEEcCCCc
Q psy15995 221 SVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP-----FKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGK 295 (683)
Q Consensus 221 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 295 (683)
...++.+|.+.|++++|+|+++.+|++++.|++|++|++.. +..+..+.+|...|.+++|+|++++|++++.|++
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~ 88 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKT 88 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCE
Confidence 34568899999999999998755699999999999999753 3346678899999999999999999999999999
Q ss_pred EEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEE
Q psy15995 296 VFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLL 375 (683)
Q Consensus 296 i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 375 (683)
|++||+.+++.+..+.. |...|.+++|+|++++|++++.|+.|++||++.. .+
T Consensus 89 v~~wd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~------------------------ 141 (319)
T 3frx_A 89 LRLWDVATGETYQRFVG--HKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CL------------------------ 141 (319)
T ss_dssp EEEEETTTTEEEEEEEC--CSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EE------------------------
T ss_pred EEEEECCCCCeeEEEcc--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eE------------------------
Confidence 99999999999988875 9999999999999999999999999999998632 21
Q ss_pred EEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCC------CCEEEEEeCCCcEEEEcCCCCCcceeccCCCCccee
Q psy15995 376 TVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPD------RGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQIN 449 (683)
Q Consensus 376 ~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~ 449 (683)
..+.+|...|.+++++|. +..+++++.|+.|++||+.+.+....+ .+
T Consensus 142 --------------------~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~------ 194 (319)
T 3frx_A 142 --------------------ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF-IG------ 194 (319)
T ss_dssp --------------------EEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE-CC------
T ss_pred --------------------EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee-cC------
Confidence 234568889999999985 447899999999999998765433322 11
Q ss_pred EEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEE
Q psy15995 450 GMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISL 529 (683)
Q Consensus 450 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (683)
+...+.++++
T Consensus 195 ----------------------------------------------------------------------h~~~v~~~~~ 204 (319)
T 3frx_A 195 ----------------------------------------------------------------------HNSNINTLTA 204 (319)
T ss_dssp ----------------------------------------------------------------------CCSCEEEEEE
T ss_pred ----------------------------------------------------------------------CCCcEEEEEE
Confidence 2335678899
Q ss_pred ccCCCEEEEEcCCCcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEeCCCeEEEEECCCCccccccc------
Q psy15995 530 DHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKE------ 603 (683)
Q Consensus 530 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~------ 603 (683)
+|++++|++++.||.|++||+.+++..... .+...|.+++|+|++.+|++++.+ .+++|++..+.......
T Consensus 205 sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~ 281 (319)
T 3frx_A 205 SPDGTLIASAGKDGEIMLWNLAAKKAMYTL--SAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGY 281 (319)
T ss_dssp CTTSSEEEEEETTCEEEEEETTTTEEEEEE--ECCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTC
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEEEe--cCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCcccccc
Confidence 999999999999999999999988765433 356789999999999999988765 59999998765443221
Q ss_pred eeeecccEEEEEecCCCCeEEEeecCCcEEEEeCCCC
Q psy15995 604 WGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASP 640 (683)
Q Consensus 604 ~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~ 640 (683)
...|...+.+++|+|||++|++|+.||.|++||+.++
T Consensus 282 ~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 282 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred ccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 1125677999999999999999999999999998764
No 32
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.2e-42 Score=329.28 Aligned_cols=294 Identities=17% Similarity=0.217 Sum_probs=237.6
Q ss_pred CCcccCCCeEEEeeCCCCCeEEEecCCeEEEEeCCC-----------CcccccccCcccceEEEEECCCCcEEEEecCCC
Q psy15995 39 LPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN-----------PAISDIYTEHSCAVNVAKYSPSGFYIASGDISG 107 (683)
Q Consensus 39 ~~~~~~~~~~~~~~s~~~~~l~~~~~~~i~v~~~~~-----------~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg 107 (683)
.|..++..+.+++|||||++|+.++++.+++||... .........|...|.+++|+||+ +|++|+.||
T Consensus 25 ~~~~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg 103 (344)
T 4gqb_B 25 APACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSG 103 (344)
T ss_dssp SCSSCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTS
T ss_pred CcccccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCC
Confidence 344456778999999999999999888888886321 11111222467789999999996 678999999
Q ss_pred CEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCCC
Q psy15995 108 KVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGP 187 (683)
Q Consensus 108 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 187 (683)
+|+|||+.+++.+....... ..|...|.+++|+|+|++|++|+.|++|++||+.+++.+ ..+.+|.+.
T Consensus 104 ~v~lWd~~~~~~~~~~~~~~----------~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~--~~~~~h~~~ 171 (344)
T 4gqb_B 104 AVELWELDENETLIVSKFCK----------YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVL--SSYRAHAAQ 171 (344)
T ss_dssp EEEEEEECTTSSCEEEEEEE----------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--EEECCCSSC
T ss_pred EEEEEeccCCCceeEeeccc----------cCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE--EEEcCcCCc
Confidence 99999999987665443211 112267999999999999999999999999999998865 456678899
Q ss_pred eeEEEEcCCCCe-EEEEecCCceEEEEEEccCCCceeeee--cCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCce
Q psy15995 188 IKDIAWSPDNQR-MVVVGEGRERFGHVFMSETGTSVGEIS--GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF 264 (683)
Q Consensus 188 i~~~~~s~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~ 264 (683)
|.+++|+|++.. +++++.++. +.+|+..+++....+. .|...+.+++|+|++..++++|+.||+|++||+++++.
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~ 249 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDNR--ILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC 249 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSC--EEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C
T ss_pred eEEEEecCCCCCceeeeccccc--cccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE
Confidence 999999999864 566665543 7899999998887764 45667999999997766789999999999999999999
Q ss_pred eeeccccccCeEEEEECCCC-CEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCC-EEEEEECCCcEEE
Q psy15995 265 KMTKQEHSRFVQAVRYSPSG-SHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGT-QLLTASGDKTCKL 342 (683)
Q Consensus 265 ~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i 342 (683)
+..+.+|...|++++|+|++ ++|++++.|++|++||+.+++.... . +|.+.|.+++|+|+++ +|++++.|++|++
T Consensus 250 ~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~-~--~H~~~V~~v~~sp~~~~llas~s~D~~v~~ 326 (344)
T 4gqb_B 250 VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS-Q--AHRDFVRDATWSPLNHSLLTTVGWDHQVVH 326 (344)
T ss_dssp CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE-C--CCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE-c--CCCCCEEEEEEeCCCCeEEEEEcCCCeEEE
Confidence 99999999999999999998 5799999999999999999887654 3 4999999999999886 5678999999999
Q ss_pred EECCCCce
Q psy15995 343 WDIETKSV 350 (683)
Q Consensus 343 wd~~~~~~ 350 (683)
|++.+...
T Consensus 327 w~v~~~~~ 334 (344)
T 4gqb_B 327 HVVPTEPL 334 (344)
T ss_dssp EECCC---
T ss_pred EECCCCCC
Confidence 99987543
No 33
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.2e-41 Score=329.27 Aligned_cols=325 Identities=17% Similarity=0.176 Sum_probs=275.8
Q ss_pred CCeEEEeeCCCCCeEEEec-CCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCccccccc
Q psy15995 45 GQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN 123 (683)
Q Consensus 45 ~~~~~~~~s~~~~~l~~~~-~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~ 123 (683)
+.+.++++||||++++++. ++.+.+|+...........+|...|++++|+|++++|++++ ||.|++||+.+++....+
T Consensus 10 ~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~ 88 (337)
T 1gxr_A 10 KPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV 88 (337)
T ss_dssp EECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCS
T ss_pred CceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeee
Confidence 4677899999999999874 55566666555544444558999999999999999999999 999999999887544333
Q ss_pred ccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEE
Q psy15995 124 EFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV 203 (683)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 203 (683)
... ....+...+.+++|+|++++|++++.|+.|++||+.+++......+..+...+.+++|+|++++++++
T Consensus 89 ~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 159 (337)
T 1gxr_A 89 SQL---------DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159 (337)
T ss_dssp EEE---------ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred ecc---------cccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEE
Confidence 211 00112367999999999999999999999999999998765566677788999999999999999998
Q ss_pred ecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCC
Q psy15995 204 GEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPS 283 (683)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~ 283 (683)
+.++. +.+|+.++++....+..|...|.+++|+|+++. +++++.|+.|++||+++++....+. +...+.+++|+|+
T Consensus 160 ~~dg~--v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~ 235 (337)
T 1gxr_A 160 CSDGN--IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK-LWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPT 235 (337)
T ss_dssp ETTSC--EEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTT
T ss_pred eCCCc--EEEEeCCCCceeeeeecccCceEEEEECCCCCE-EEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCC
Confidence 87654 789999999999999999999999999999985 9999999999999999988877764 7788999999999
Q ss_pred CCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceec
Q psy15995 284 GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQ 363 (683)
Q Consensus 284 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (683)
++++++++.++.|++||+.+++.... . .|...|.+++|+|++++|++++.||.+++||+.+++.+..
T Consensus 236 ~~~l~~~~~~~~i~~~~~~~~~~~~~-~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~---------- 302 (337)
T 1gxr_A 236 GEWLAVGMESSNVEVLHVNKPDKYQL-H--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ---------- 302 (337)
T ss_dssp SSEEEEEETTSCEEEEETTSSCEEEE-C--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE----------
T ss_pred CCEEEEEcCCCcEEEEECCCCCeEEE-c--CCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE----------
Confidence 99999999999999999998876543 3 3889999999999999999999999999999998765422
Q ss_pred eEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcC
Q psy15995 364 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA 431 (683)
Q Consensus 364 ~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~ 431 (683)
..|...+.+++|+|++++|++++.||.|++|++
T Consensus 303 -----------------------------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 303 -----------------------------------SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp -----------------------------------EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred -----------------------------------ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 236788999999999999999999999999986
No 34
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.1e-41 Score=340.03 Aligned_cols=346 Identities=14% Similarity=0.183 Sum_probs=281.5
Q ss_pred CeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEec
Q psy15995 231 PINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL 310 (683)
Q Consensus 231 ~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 310 (683)
.++.++|+|++++ +++++.|+.+++||..+++....+..| ..+....|+|++++|++++.||.|++||+.+++....+
T Consensus 58 ~~~~~~~s~~g~~-l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 135 (420)
T 3vl1_A 58 AGKGNTFEKVGSH-LYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID 135 (420)
T ss_dssp CCTTCEEEEEETT-EEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET
T ss_pred cccceeeeecCCe-EEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec
Confidence 3557899999996 999999999999999888877777666 44556678999999999999999999999999988887
Q ss_pred cCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCC
Q psy15995 311 GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNN 390 (683)
Q Consensus 311 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~ 390 (683)
.. |...|.+++|+|++++|++++.|+.|++||+++++.+.
T Consensus 136 ~~--h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~-------------------------------------- 175 (420)
T 3vl1_A 136 QA--HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR-------------------------------------- 175 (420)
T ss_dssp TS--SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE--------------------------------------
T ss_pred cc--ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce--------------------------------------
Confidence 55 99999999999999999999999999999998765433
Q ss_pred CCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCcceeccC--CCCcceeEEEEeCCeEEEEEcCCeEE
Q psy15995 391 PSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGA--GHGNQINGMKATGELLYTCGIDDTIK 468 (683)
Q Consensus 391 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~--~~~~~v~~~~~~~~~l~~~~~d~~i~ 468 (683)
.+.+|...|.+++|+|++++|++++.|+.|++||+++++....+.. .+...+.++.+...
T Consensus 176 ------~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------ 237 (420)
T 3vl1_A 176 ------TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVG------------ 237 (420)
T ss_dssp ------EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEEC------------
T ss_pred ------EEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecC------------
Confidence 3467899999999999999999999999999999999887766542 34555655554300
Q ss_pred EEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEE
Q psy15995 469 QVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIY 548 (683)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~ 548 (683)
............+.+++++|++++|++++.||.|++|
T Consensus 238 -------------------------------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 274 (420)
T 3vl1_A 238 -------------------------------------------TDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVH 274 (420)
T ss_dssp -------------------------------------------CCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEE
T ss_pred -------------------------------------------CcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEE
Confidence 0000011123457888999999999999999999999
Q ss_pred EcCCCccCcceeecCCcCeeEEEECCCCC-EEEEEeCCCeEEEEECCCCccccccceeeecccEEEEEecCCCCeEEEee
Q psy15995 549 ELNNKSLSPKAELDHLGPVTDCSFSPSNE-YLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGS 627 (683)
Q Consensus 549 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~ 627 (683)
|+.+++........|...|++++|+|+++ +|++++.||.|++||+.+++.........|...|+++.+ |++++|++++
T Consensus 275 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~ 353 (420)
T 3vl1_A 275 NVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSG 353 (420)
T ss_dssp ETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEET
T ss_pred ECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEec
Confidence 99998877666666889999999999999 999999999999999998765322222226777888855 5788999999
Q ss_pred cCCcEEEEeCCCCcee---------eEeecCCCCCCeeEEEEc-cCC---eEEEeeCCCcEEEEeecc
Q psy15995 628 LDTTIIIWSLASPAKH---------IIIKNAHPQSQITRLQWL-DND---LLVSVGQDCNTKIWEIAP 682 (683)
Q Consensus 628 ~d~~v~iw~~~~~~~~---------~~~~~~~~~~~v~~l~~~-~~~---~l~s~~~d~~v~vw~~~~ 682 (683)
.|+.|++|++..+... ..+ ..|...|.+++|+ ++. .|++++.+|.+.+|++++
T Consensus 354 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 354 FDTSIKLDIISDPESERPAIEFETPTFL--VSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp TTEEEEEEEECCTTCCSCEECTTSCEEE--CCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CCccEEEEeccCCCCCccceeccCccEE--ccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 9999999999874322 122 2367899999999 556 699999999999999874
No 35
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-43 Score=350.69 Aligned_cols=361 Identities=12% Similarity=0.145 Sum_probs=281.7
Q ss_pred CCeEEEeeCCCCC-eEEEe-----------cCCeEEEEeCCCCc---ccccccCcccceEEEEECCCCcEEEEecCCCCE
Q psy15995 45 GQPIVLGGDPKGK-NFLYT-----------NGNSVIIRNIENPA---ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKV 109 (683)
Q Consensus 45 ~~~~~~~~s~~~~-~l~~~-----------~~~~i~v~~~~~~~---~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i 109 (683)
..+.+++|||+|+ +|+++ .++.|++||+.+++ .+..+ .|...|++++|+|++++||+++.||.|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeE
Confidence 3577899999998 78876 46799999999876 33333 699999999999999999999999999
Q ss_pred EEEeCCC----cccccccccccCCCCcccceeeeeecceeeeEeecc-ceEEEeecCCccEEEEeccccc------eeee
Q psy15995 110 RIWDTVN----KEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSI-GFYIASGDISGKVRIWDTVNKE------HILK 178 (683)
Q Consensus 110 ~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~i~iwd~~~~~------~~~~ 178 (683)
++||+.+ .+.+..+..|. ..|.+++|+|+ +.+|++++.|+.|++||+.+++ ....
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~--------------~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 157 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHS--------------SSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLT 157 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSS--------------SCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBC
T ss_pred EEeecccccccccchhhccCCc--------------cceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccc
Confidence 9999987 33455554444 78999999998 8999999999999999999876 2222
Q ss_pred -ccccccCCCeeEEEEcCC-CCeEEEEecCCceEEEEEEccCCCceeeeecC------CcCeEEEEeecCCCeEEEEeeC
Q psy15995 179 -NEFHPIGGPIKDIAWSPD-NQRMVVVGEGRERFGHVFMSETGTSVGEISGQ------SKPINSCDFKPSRPFRIITGSE 250 (683)
Q Consensus 179 -~~~~~~~~~i~~~~~s~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~ 250 (683)
.....|...|.+++|+|+ +.++++++.++. +.+|+.++++.+..+..+ ...|.+++|+|++..++++++.
T Consensus 158 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 235 (416)
T 2pm9_A 158 PGQSMSSVDEVISLAWNQSLAHVFASAGSSNF--ASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATG 235 (416)
T ss_dssp CCCSCCSSCCCCEEEECSSCTTEEEEESSSSC--EEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEEC
T ss_pred cccccCCCCCeeEEEeCCCCCcEEEEEcCCCC--EEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEEC
Confidence 234567789999999999 667777666543 799999999988888877 7899999999998656999999
Q ss_pred CC---eEEEEcCCCC-ceeeecc-ccccCeEEEEECC-CCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEE
Q psy15995 251 DN---TIAVFEGPPF-KFKMTKQ-EHSRFVQAVRYSP-SGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW 324 (683)
Q Consensus 251 d~---~i~iw~~~~~-~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~ 324 (683)
|+ .|++||++++ +....+. +|...|.+++|+| ++++|++++.||.|++||+++++.+..+.. |...|.+++|
T Consensus 236 d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~--~~~~v~~~~~ 313 (416)
T 2pm9_A 236 SDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA--RGNWCFKTKF 313 (416)
T ss_dssp CSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC--SSSCCCCEEE
T ss_pred CCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC--CCCceEEEEE
Confidence 98 9999999986 5667777 8999999999999 899999999999999999999999988875 8999999999
Q ss_pred ccCC-CEEEEEECCCcEEEEECCCCceeeEEEe-cCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeecc
Q psy15995 325 KPDG-TQLLTASGDKTCKLWDIETKSVVSEFIM-GNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHN 402 (683)
Q Consensus 325 ~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 402 (683)
+|++ ++|++++.|+.|++||+.+......... ..........+.+.+..++.+...+.+. + .....|.
T Consensus 314 s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~ 383 (416)
T 2pm9_A 314 APEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFH---L-------QAPTWYG 383 (416)
T ss_dssp CTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSC---C-------CCCSTTC
T ss_pred CCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccccccccc---c-------cCCcccc
Confidence 9998 8999999999999999988764332211 0000000111111111111111111111 0 1223467
Q ss_pred ccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC
Q psy15995 403 KPITALALSPDRGTVFTGSHDGFITRWNAKTG 434 (683)
Q Consensus 403 ~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~ 434 (683)
.++.+++|+|+|++|++++.|+.|++|++.+.
T Consensus 384 ~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 384 EPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 78889999999999999999999999998764
No 36
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-41 Score=337.06 Aligned_cols=342 Identities=15% Similarity=0.233 Sum_probs=275.8
Q ss_pred EEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcC----CCCc------eeeeccc----------
Q psy15995 211 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEG----PPFK------FKMTKQE---------- 270 (683)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~----~~~~------~~~~~~~---------- 270 (683)
..+|+++..........|.+.|.+++|+|+++.+|++++.|+.|++|++ .+++ ....+..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (425)
T 1r5m_A 27 DSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGK 106 (425)
T ss_dssp -------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC-----
T ss_pred cccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccC
Confidence 3566666655555566677999999999999933999999999999999 8877 3444443
Q ss_pred cccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCce
Q psy15995 271 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSV 350 (683)
Q Consensus 271 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 350 (683)
|...|.+++|+|++++|++++.||.|++|| .+++.+..+.. |...|.+++|+|++++|++++.|+.+++||+.+++.
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 183 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNF--HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV 183 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECC--CCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccC--CCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Confidence 677999999999999999999999999999 67777777765 999999999999999999999999999999999988
Q ss_pred eeEEEecCcce--------------eceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCE
Q psy15995 351 VSEFIMGNQVE--------------DQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGT 416 (683)
Q Consensus 351 ~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 416 (683)
+..+....... ...+.+.++ ..+++++.+|.+++||+.. ......+..|...|.+++|+|++++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~ 261 (425)
T 1r5m_A 184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITE-KTPTGKLIGHHGPISVLEFNDTNKL 261 (425)
T ss_dssp EEEECCC---------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTC-SSCSEEECCCSSCEEEEEEETTTTE
T ss_pred EEEeeccccCccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCC-CceeeeeccCCCceEEEEECCCCCE
Confidence 77765443321 555666665 6689999999999999987 4566777889999999999999999
Q ss_pred EEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCC
Q psy15995 417 VFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDEN 496 (683)
Q Consensus 417 l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (683)
|++++.|+.|++||+.+++...... .|
T Consensus 262 l~~~~~d~~i~i~d~~~~~~~~~~~-~~---------------------------------------------------- 288 (425)
T 1r5m_A 262 LLSASDDGTLRIWHGGNGNSQNCFY-GH---------------------------------------------------- 288 (425)
T ss_dssp EEEEETTSCEEEECSSSBSCSEEEC-CC----------------------------------------------------
T ss_pred EEEEcCCCEEEEEECCCCccceEec-CC----------------------------------------------------
Confidence 9999999999999998765544331 12
Q ss_pred eEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCcceeecCCcCeeEEEECCCC
Q psy15995 497 TLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSN 576 (683)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~ 576 (683)
...+.+++++|++ ++++++.|+.|++||+.+++..... ..|...|.+++|+|++
T Consensus 289 ------------------------~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~s~~~ 342 (425)
T 1r5m_A 289 ------------------------SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS-IVDGVPIFAGRISQDG 342 (425)
T ss_dssp ------------------------SSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE-ECTTCCEEEEEECTTS
T ss_pred ------------------------CccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec-ccCCccEEEEEEcCCC
Confidence 2346778888988 8999999999999999888765333 3578899999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCc--------------------cccccceeeecc--cEEEEEecCCCCeEEEeecCCcEEE
Q psy15995 577 EYLVASDAHRKVVLYRVPDFE--------------------LAHNKEWGFHSA--KVNCVAWSPDSALVASGSLDTTIII 634 (683)
Q Consensus 577 ~~l~~~~~d~~i~i~~~~~~~--------------------~~~~~~~~~h~~--~v~~~~~s~d~~~l~~~~~d~~v~i 634 (683)
++|++++.||.|++||+.+++ .+. .+.+|.. .|++++|+|++++|++++.||.|++
T Consensus 343 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 420 (425)
T 1r5m_A 343 QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYA--SYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSV 420 (425)
T ss_dssp SEEEEEETTSCEEEEECHHHHC--------------CEECCEEE--EECCTTCCCCEEEEEECTTSSEEEEEESSSCCEE
T ss_pred CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhh--hhcCcccCCceEEEEccCCCceEEEEecCceEEE
Confidence 999999999999999998776 433 3333655 9999999999999999999999999
Q ss_pred EeCC
Q psy15995 635 WSLA 638 (683)
Q Consensus 635 w~~~ 638 (683)
|+++
T Consensus 421 w~~~ 424 (425)
T 1r5m_A 421 VAIP 424 (425)
T ss_dssp EECC
T ss_pred Eeec
Confidence 9986
No 37
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-42 Score=344.50 Aligned_cols=365 Identities=16% Similarity=0.255 Sum_probs=278.1
Q ss_pred cceeeeEeeccce-EEEee----------cCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceE
Q psy15995 142 TSIRNILVLSIGF-YIASG----------DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF 210 (683)
Q Consensus 142 ~~i~~~~~s~~~~-~l~~~----------~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~ 210 (683)
..+.+++|+|+++ +|+++ +.|+.|++||+.+++.........+...|.+++|+|++++|++++.++.
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-- 90 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGS-- 90 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSC--
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCe--
Confidence 5788999999997 99999 8899999999998764322233346789999999999999999887654
Q ss_pred EEEEEccC----CCceeeeecCCcCeEEEEeecC-CCeEEEEeeCCCeEEEEcCCCCc------eeee---ccccccCeE
Q psy15995 211 GHVFMSET----GTSVGEISGQSKPINSCDFKPS-RPFRIITGSEDNTIAVFEGPPFK------FKMT---KQEHSRFVQ 276 (683)
Q Consensus 211 ~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~------~~~~---~~~~~~~v~ 276 (683)
+.+|+... .+.+..+.+|...|.+++|+|+ +. ++++++.|+.|++||+.+.+ .... ...|...|.
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN-VLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT-BEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred EEEeecccccccccchhhccCCccceEEEEEcCCCCC-EEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence 78888877 3578889999999999999998 55 59999999999999998876 3333 367899999
Q ss_pred EEEECCC-CCEEEEEcCCCcEEEEeCCCCeeEEeccCCc----cccCeEEEEEccCC-CEEEEEECCC---cEEEEECCC
Q psy15995 277 AVRYSPS-GSHFASAGFDGKVFLYDGASADLVSELGNPA----HKGGVYAVAWKPDG-TQLLTASGDK---TCKLWDIET 347 (683)
Q Consensus 277 ~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~-~~l~~~~~dg---~i~iwd~~~ 347 (683)
+++|+|+ +.+|++++.||.|++||+++++.+..+.... |...|.+++|+|++ .++++++.|+ .|++||+++
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~ 249 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence 9999999 7899999999999999999999888886521 17899999999987 6899999998 999999987
Q ss_pred CceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeee-eccccEEEEEEeC-CCCEEEEEeCCCc
Q psy15995 348 KSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIK-GHNKPITALALSP-DRGTVFTGSHDGF 425 (683)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~ 425 (683)
+.. +...+. +|...|.+++|+| ++++|++++.|+.
T Consensus 250 ~~~-------------------------------------------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~ 286 (416)
T 2pm9_A 250 ANT-------------------------------------------PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT 286 (416)
T ss_dssp TTS-------------------------------------------CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE
T ss_pred CCC-------------------------------------------CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC
Confidence 531 123345 7889999999999 9999999999999
Q ss_pred EEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEece
Q psy15995 426 ITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQ 505 (683)
Q Consensus 426 i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (683)
|++||+.+++....+. .
T Consensus 287 v~~wd~~~~~~~~~~~-~-------------------------------------------------------------- 303 (416)
T 2pm9_A 287 VLLWNPESAEQLSQFP-A-------------------------------------------------------------- 303 (416)
T ss_dssp EEEECSSSCCEEEEEE-C--------------------------------------------------------------
T ss_pred EEEeeCCCCccceeec-C--------------------------------------------------------------
Confidence 9999998776544331 1
Q ss_pred EEEEeCCceeeeecCCCCCcEEEEccCC-CEEEEEcCCCcEEEEEcCCCccCcceee-cCCcCeeEEEECCCCCEEEEEe
Q psy15995 506 ISIVENGAKVSSLPIDYEPSSISLDHEH-GLVAVGGADSKVHIYELNNKSLSPKAEL-DHLGPVTDCSFSPSNEYLVASD 583 (683)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~ 583 (683)
+...+.+++|+|++ .+|++++.|+.|++|++.+......... ..........+.+.+..++.++
T Consensus 304 --------------~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (416)
T 2pm9_A 304 --------------RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKE 369 (416)
T ss_dssp --------------SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCS
T ss_pred --------------CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccc
Confidence 22356788999998 8999999999999999987765432211 1112222334444444444433
Q ss_pred CCCeEEEEECCCCccccccceeeecccEEEEEecCCCCeEEEeecCCcEEEEeCCCC
Q psy15995 584 AHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASP 640 (683)
Q Consensus 584 ~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~ 640 (683)
..+.+.+ ....+ |..++++++|+|||++||+++.|+.|+||++.+.
T Consensus 370 ~~~~~~~---------~~~~~--~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 370 KPSVFHL---------QAPTW--YGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCCSSCC---------CCCST--TCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccc---------cCCcc--ccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 3322211 11111 6778889999999999999999999999999865
No 38
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-41 Score=340.71 Aligned_cols=352 Identities=11% Similarity=0.137 Sum_probs=285.5
Q ss_pred eEEEEeCCCCcccccccCcccceEEEEECCCCc-EEEEecCCCCEEEEeC----CCccc------ccccccccCCCCccc
Q psy15995 66 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGF-YIASGDISGKVRIWDT----VNKEH------ILKNEFHPIGGPIKD 134 (683)
Q Consensus 66 ~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~-~las~~~dg~i~iwd~----~~~~~------~~~~~~~~~~~~~~~ 134 (683)
.+.+|+.+..........|.+.|++++|+|+|+ +||+++.||.|++||+ .+++. ...+... ....
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--- 101 (425)
T 1r5m_A 26 IDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHP-FALS--- 101 (425)
T ss_dssp --------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECC-CCCC---
T ss_pred ccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccc-cccc---
Confidence 456788776655544556779999999999999 9999999999999999 87763 2222211 0000
Q ss_pred ceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEE
Q psy15995 135 IGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVF 214 (683)
Q Consensus 135 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~ 214 (683)
.....+...|.+++|+|++++|++++.||.|++|| .+++.+ ..+..|...|.+++|+|+++++++++.++. +.+|
T Consensus 102 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--i~iw 176 (425)
T 1r5m_A 102 ASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALL--NVLNFHRAPIVSVKWNKDGTHIISMDVENV--TILW 176 (425)
T ss_dssp ------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEE--EEECCCCSCEEEEEECTTSSEEEEEETTCC--EEEE
T ss_pred ccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCee--eeccCCCccEEEEEECCCCCEEEEEecCCe--EEEE
Confidence 00011235899999999999999999999999999 444433 345567899999999999999999887654 7899
Q ss_pred EccCCCceeeeecCCcC---------------eEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEE
Q psy15995 215 MSETGTSVGEISGQSKP---------------INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVR 279 (683)
Q Consensus 215 ~~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~ 279 (683)
+..+++.+..+..+... +.++.|+|++ .+++++.++.|++||+.+++....+..|...|.+++
T Consensus 177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~ 254 (425)
T 1r5m_A 177 NVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLE 254 (425)
T ss_dssp ETTTTEEEEEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEE
T ss_pred ECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEE
Confidence 99999999888888877 9999999987 489999999999999999999999999999999999
Q ss_pred ECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCc
Q psy15995 280 YSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQ 359 (683)
Q Consensus 280 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 359 (683)
|+|++++|++++.||.|++||+.+++....+.. |...|.+++|+|++ .+++++.|+.|++||+.+++.+..+. .+.
T Consensus 255 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~ 330 (425)
T 1r5m_A 255 FNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYG--HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSI-VDG 330 (425)
T ss_dssp EETTTTEEEEEETTSCEEEECSSSBSCSEEECC--CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEE-CTT
T ss_pred ECCCCCEEEEEcCCCEEEEEECCCCccceEecC--CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecc-cCC
Confidence 999999999999999999999999988888865 89999999999999 99999999999999999988877665 344
Q ss_pred ceeceEEEEecCCEEEEEecCCcEEEEecCCCC-------------------cceeeeeeccc--cEEEEEEeCCCCEEE
Q psy15995 360 VEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPS-------------------TPIRVIKGHNK--PITALALSPDRGTVF 418 (683)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~-------------------~~~~~~~~~~~--~v~~~~~~~~~~~l~ 418 (683)
.....+.++++++++++++.+|.|++||+.... ..+..+..|.. .|++++|+|++++|+
T Consensus 331 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 410 (425)
T 1r5m_A 331 VPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKIS 410 (425)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEE
T ss_pred ccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEE
Confidence 567788889999999999999999999998643 15677888876 999999999999999
Q ss_pred EEeCCCcEEEEcCC
Q psy15995 419 TGSHDGFITRWNAK 432 (683)
Q Consensus 419 ~~~~dg~i~~w~~~ 432 (683)
+++.||.|++|+++
T Consensus 411 ~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 411 VAYSLQEGSVVAIP 424 (425)
T ss_dssp EEESSSCCEEEECC
T ss_pred EEecCceEEEEeec
Confidence 99999999999985
No 39
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.3e-41 Score=330.35 Aligned_cols=284 Identities=21% Similarity=0.320 Sum_probs=248.7
Q ss_pred cCCCeEEEeeCCCCCeEEEecCCeEEEEeCCCCcccccccCccc------------------ceEEEEECCCCcEEEEec
Q psy15995 43 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSC------------------AVNVAKYSPSGFYIASGD 104 (683)
Q Consensus 43 ~~~~~~~~~~s~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~h~~------------------~v~~~~~s~d~~~las~~ 104 (683)
+.+.+.+++|||||++||++.++.+.+|++.+++.+..+.+|.. .|++++|+|||++||+|+
T Consensus 63 h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~ 142 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 142 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEc
Confidence 66788999999999999999999999999999998887776643 499999999999999999
Q ss_pred CCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeecccccc
Q psy15995 105 ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPI 184 (683)
Q Consensus 105 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 184 (683)
.|+.|++||+.+++.+..+..|. ..|.+++|+|++++|++++.|++|++||+.+++...... +
T Consensus 143 ~d~~i~iwd~~~~~~~~~~~~h~--------------~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~---~ 205 (393)
T 1erj_A 143 EDRLIRIWDIENRKIVMILQGHE--------------QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS---I 205 (393)
T ss_dssp TTSCEEEEETTTTEEEEEECCCS--------------SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---C
T ss_pred CCCeEEEEECCCCcEEEEEccCC--------------CCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE---c
Confidence 99999999999998887777665 779999999999999999999999999999987654443 3
Q ss_pred CCCeeEEEEcC-CCCeEEEEecCCceEEEEEEccCCCceeee-------ecCCcCeEEEEeecCCCeEEEEeeCCCeEEE
Q psy15995 185 GGPIKDIAWSP-DNQRMVVVGEGRERFGHVFMSETGTSVGEI-------SGQSKPINSCDFKPSRPFRIITGSEDNTIAV 256 (683)
Q Consensus 185 ~~~i~~~~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 256 (683)
...+.+++|+| +++++++++.++. +.+|+..+++.+..+ .+|...|.+++|+|++++ +++++.|+.|++
T Consensus 206 ~~~v~~~~~~~~~~~~l~~~s~d~~--v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-l~s~s~d~~v~~ 282 (393)
T 1erj_A 206 EDGVTTVAVSPGDGKYIAAGSLDRA--VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS-VVSGSLDRSVKL 282 (393)
T ss_dssp SSCEEEEEECSTTCCEEEEEETTSC--EEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE-EEEEETTSEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEcCCCc--EEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCE-EEEEeCCCEEEE
Confidence 47899999999 8899998887754 789999988877766 579999999999999995 999999999999
Q ss_pred EcCCCC------------ceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEE
Q psy15995 257 FEGPPF------------KFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW 324 (683)
Q Consensus 257 w~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~ 324 (683)
||+++. .....+.+|...|.+++|+|++++|++++.|+.|++||..+++.+..+.. |...|.+++|
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~--h~~~v~~v~~ 360 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG--HRNSVISVAV 360 (393)
T ss_dssp EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEE
T ss_pred EECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECC--CCCCEEEEEe
Confidence 998653 34556778999999999999999999999999999999999999888865 9999999999
Q ss_pred cc------CCCEEEEEECCCcEEEEECCCC
Q psy15995 325 KP------DGTQLLTASGDKTCKLWDIETK 348 (683)
Q Consensus 325 ~~------~~~~l~~~~~dg~i~iwd~~~~ 348 (683)
++ ++++|++++.||.|++|++...
T Consensus 361 ~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 361 ANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred cCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 86 6789999999999999997643
No 40
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=9.9e-41 Score=321.65 Aligned_cols=295 Identities=20% Similarity=0.310 Sum_probs=234.0
Q ss_pred ceeeeecCCcCeEEEEe-----ec-CCCeEEEEeeCCCeEEEEcCCCC-------ceeeeccccccCeEEEEECCCCCEE
Q psy15995 221 SVGEISGQSKPINSCDF-----KP-SRPFRIITGSEDNTIAVFEGPPF-------KFKMTKQEHSRFVQAVRYSPSGSHF 287 (683)
Q Consensus 221 ~~~~~~~~~~~v~~~~~-----~~-~~~~~l~~~~~d~~i~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l 287 (683)
....+.+|.+.|++++| ++ +++ +|++|+.|++|++||+... .....+.+|...|.+++|+|++.++
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 45678999999999999 66 676 5999999999999998643 3556788999999999999999999
Q ss_pred EEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEE
Q psy15995 288 ASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSC 367 (683)
Q Consensus 288 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (683)
++++.|++|++||+++++.+..+.. |...|.+++|+|++++|++++.|+.|++||+..... ...
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~--h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~-~~~------------- 155 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVG--HQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK-FSS------------- 155 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEEC--CCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE-EEC-------------
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcC--CCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce-eee-------------
Confidence 9999999999999999999888865 999999999999999999999999999999873221 110
Q ss_pred EecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCC----------CEEEEEeCCCcEEEEcCCCCCcc
Q psy15995 368 LWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDR----------GTVFTGSHDGFITRWNAKTGEND 437 (683)
Q Consensus 368 ~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~~~dg~i~~w~~~~~~~~ 437 (683)
.....|...|.+++|+|++ .++++++.|+.|++||.. .+..
T Consensus 156 ----------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~ 206 (343)
T 2xzm_R 156 ----------------------------AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIR 206 (343)
T ss_dssp ----------------------------CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEE
T ss_pred ----------------------------ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-Ccee
Confidence 1123578889999999986 566666666666666622 1110
Q ss_pred eeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeee
Q psy15995 438 RVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSS 517 (683)
Q Consensus 438 ~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (683)
.. .
T Consensus 207 ~~-----------------------------------------------------------------------------~ 209 (343)
T 2xzm_R 207 YT-----------------------------------------------------------------------------F 209 (343)
T ss_dssp EE-----------------------------------------------------------------------------E
T ss_pred EE-----------------------------------------------------------------------------E
Confidence 00 0
Q ss_pred ecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q psy15995 518 LPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 597 (683)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~ 597 (683)
..+...+.+++++|++++|++++.||.|++||+...... .....+...|.+++|+|++++++++ .|+.+++|++.+++
T Consensus 210 ~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 210 KAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP-QREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQS 287 (343)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC-SEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCC
T ss_pred cCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc-ceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCC
Confidence 123446788999999999999999999999999544332 2223356679999999999888755 57889999998766
Q ss_pred ccc--ccc---------eeeecccEEEEEecCCCCeEEEeecCCcEEEEeCCCC
Q psy15995 598 LAH--NKE---------WGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASP 640 (683)
Q Consensus 598 ~~~--~~~---------~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~ 640 (683)
... ... ..+|...|++++|+|+|++|++|+.||.|++|+++++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 288 KAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 543 111 1148888999999999999999999999999998764
No 41
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-40 Score=326.18 Aligned_cols=289 Identities=21% Similarity=0.414 Sum_probs=239.1
Q ss_pred ccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCc----------------cccCeEEEEEccCCCEEEE
Q psy15995 270 EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPA----------------HKGGVYAVAWKPDGTQLLT 333 (683)
Q Consensus 270 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----------------~~~~i~~~~~~~~~~~l~~ 333 (683)
.|...|.+++|+|+|++|++++ ++.+++|++.+++.+..+.... +...|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 5999999999999999999987 6899999999998887765311 1224899999999999999
Q ss_pred EECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCC
Q psy15995 334 ASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPD 413 (683)
Q Consensus 334 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 413 (683)
++.|+.|++||+.+++.+ ..+.+|...|.+++|+|+
T Consensus 141 ~~~d~~i~iwd~~~~~~~--------------------------------------------~~~~~h~~~v~~~~~~p~ 176 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIV--------------------------------------------MILQGHEQDIYSLDYFPS 176 (393)
T ss_dssp EETTSCEEEEETTTTEEE--------------------------------------------EEECCCSSCEEEEEECTT
T ss_pred EcCCCeEEEEECCCCcEE--------------------------------------------EEEccCCCCEEEEEEcCC
Confidence 999999999999876543 234678999999999999
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeee
Q psy15995 414 RGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDI 493 (683)
Q Consensus 414 ~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (683)
+++|++++.|+.|++||+++++......
T Consensus 177 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~---------------------------------------------------- 204 (393)
T 1erj_A 177 GDKLVSGSGDRTVRIWDLRTGQCSLTLS---------------------------------------------------- 204 (393)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEE----------------------------------------------------
T ss_pred CCEEEEecCCCcEEEEECCCCeeEEEEE----------------------------------------------------
Confidence 9999999999999999998765433221
Q ss_pred cCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEcc-CCCEEEEEcCCCcEEEEEcCCCccCccee------ecCCcC
Q psy15995 494 DENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDH-EHGLVAVGGADSKVHIYELNNKSLSPKAE------LDHLGP 566 (683)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~~ 566 (683)
....+.+++++| +++++++++.|+.|++||+.++....... .+|...
T Consensus 205 --------------------------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~ 258 (393)
T 1erj_A 205 --------------------------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS 258 (393)
T ss_dssp --------------------------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSC
T ss_pred --------------------------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCC
Confidence 112356788888 88999999999999999998876553331 358899
Q ss_pred eeEEEECCCCCEEEEEeCCCeEEEEECCCCccc----------cccceeeecccEEEEEecCCCCeEEEeecCCcEEEEe
Q psy15995 567 VTDCSFSPSNEYLVASDAHRKVVLYRVPDFELA----------HNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWS 636 (683)
Q Consensus 567 v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~----------~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~ 636 (683)
|++++|+|++++|++++.|+.|++||+.+.... ....+.+|...|.+++|+|++++|++|+.|+.|++||
T Consensus 259 v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd 338 (393)
T 1erj_A 259 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 338 (393)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 999999999999999999999999999764321 1123445999999999999999999999999999999
Q ss_pred CCCCceeeEeecCCCCCCeeEEEEcc-------CCeEEEeeCCCcEEEEeeccC
Q psy15995 637 LASPAKHIIIKNAHPQSQITRLQWLD-------NDLLVSVGQDCNTKIWEIAPF 683 (683)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~v~~l~~~~-------~~~l~s~~~d~~v~vw~~~~~ 683 (683)
+.+++....+.. |...|.+++|++ +++|++++.||+|++|+++++
T Consensus 339 ~~~~~~~~~l~~--h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 339 KKSGNPLLMLQG--HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp TTTCCEEEEEEC--CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCCCeEEEEECC--CCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 999998888765 789999999984 468999999999999998753
No 42
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.6e-40 Score=313.29 Aligned_cols=293 Identities=22% Similarity=0.390 Sum_probs=249.0
Q ss_pred CceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEE
Q psy15995 262 FKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCK 341 (683)
Q Consensus 262 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 341 (683)
......+.+|...|.+++|+|++++|++++.||.|++|+..+++....+.. |...|.+++|+|++++|++++.|+.|+
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~d~~i~ 90 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG--HKLGISDVAWSSDSNLLVSASDDKTLK 90 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhcc--CCCceEEEEEcCCCCEEEEECCCCEEE
Confidence 455677889999999999999999999999999999999999998888865 999999999999999999999999999
Q ss_pred EEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEe
Q psy15995 342 LWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS 421 (683)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 421 (683)
+||+++++.+. .+.+|...|.+++|+|+++++++++
T Consensus 91 vwd~~~~~~~~--------------------------------------------~~~~~~~~v~~~~~~~~~~~l~s~~ 126 (312)
T 4ery_A 91 IWDVSSGKCLK--------------------------------------------TLKGHSNYVFCCNFNPQSNLIVSGS 126 (312)
T ss_dssp EEETTTCCEEE--------------------------------------------EEECCSSCEEEEEECSSSSEEEEEE
T ss_pred EEECCCCcEEE--------------------------------------------EEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 99998876543 3456888999999999999999999
Q ss_pred CCCcEEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEE
Q psy15995 422 HDGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTV 501 (683)
Q Consensus 422 ~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (683)
.|+.|++||+++++...... .|
T Consensus 127 ~d~~i~iwd~~~~~~~~~~~-~~--------------------------------------------------------- 148 (312)
T 4ery_A 127 FDESVRIWDVKTGKCLKTLP-AH--------------------------------------------------------- 148 (312)
T ss_dssp TTSCEEEEETTTCCEEEEEC-CC---------------------------------------------------------
T ss_pred CCCcEEEEECCCCEEEEEec-CC---------------------------------------------------------
Confidence 99999999998776544331 11
Q ss_pred EeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEE
Q psy15995 502 TVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVA 581 (683)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 581 (683)
..++.+++++|+++++++++.||.|++||+.+++........+..++..++|+|++++|++
T Consensus 149 -------------------~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 209 (312)
T 4ery_A 149 -------------------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 209 (312)
T ss_dssp -------------------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEE
T ss_pred -------------------CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEE
Confidence 2346778899999999999999999999999887665555557788999999999999999
Q ss_pred EeCCCeEEEEECCCCccccccceeeecccE---EEEEecCCCCeEEEeecCCcEEEEeCCCCceeeEeecCCCCCCeeEE
Q psy15995 582 SDAHRKVVLYRVPDFELAHNKEWGFHSAKV---NCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRL 658 (683)
Q Consensus 582 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v---~~~~~s~d~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~l 658 (683)
++.|+.|++||+.+++...... +|...+ ......+++++|++|+.||.|++||+.+++....+.. |.+.|.++
T Consensus 210 ~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~ 285 (312)
T 4ery_A 210 ATLDNTLKLWDYSKGKCLKTYT--GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG--HTDVVIST 285 (312)
T ss_dssp EETTTEEEEEETTTTEEEEEEC--SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECC--CSSCEEEE
T ss_pred EcCCCeEEEEECCCCcEEEEEE--ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhc--cCCcEEEE
Confidence 9999999999999988764433 254432 2233346889999999999999999999988877765 78999999
Q ss_pred EEc-cCCeEEEee--CCCcEEEEeec
Q psy15995 659 QWL-DNDLLVSVG--QDCNTKIWEIA 681 (683)
Q Consensus 659 ~~~-~~~~l~s~~--~d~~v~vw~~~ 681 (683)
+|+ ++.+|++++ .|+.|++|+.+
T Consensus 286 ~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 286 ACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EECSSSSEEEEEECTTTCCEEEEECC
T ss_pred eecCcCCceEEEEccCCccEEEecCC
Confidence 999 677888886 69999999975
No 43
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-40 Score=318.83 Aligned_cols=298 Identities=22% Similarity=0.314 Sum_probs=222.8
Q ss_pred CCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCC--ceeeec-cc-cccCeEEEEECCCCCEEEEEcCCC
Q psy15995 219 GTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF--KFKMTK-QE-HSRFVQAVRYSPSGSHFASAGFDG 294 (683)
Q Consensus 219 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~dg 294 (683)
.+.+..+.+|.+.|.+++|+|+ +|++++.|++|++||+..+ +....+ .+ |...|.+++|+|++++|++++.|+
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred cccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 3456778999999999999998 5999999999999998875 344444 34 999999999999999999999999
Q ss_pred cEEEEeCCC-------CeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEE
Q psy15995 295 KVFLYDGAS-------ADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSC 367 (683)
Q Consensus 295 ~i~iw~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (683)
.|++||... .+.+..+.. |...|.+++|+|++++|++++.|+.|++||++.....
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~--h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~---------------- 142 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEG--HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE---------------- 142 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC----------------
T ss_pred cEEEEEcccCcCccccceeEEEEcC--CCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC----------------
Confidence 999999853 344555554 9999999999999999999999999999999543210
Q ss_pred EecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCC--cceeccCCCC
Q psy15995 368 LWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGE--NDRVQGAGHG 445 (683)
Q Consensus 368 ~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~--~~~~~~~~~~ 445 (683)
...+..+.+|...|.+++|+|++++|++++.|+.|++||..++. ....+ .+|.
T Consensus 143 ------------------------~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~-~~h~ 197 (330)
T 2hes_X 143 ------------------------YECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVL-NGHE 197 (330)
T ss_dssp ------------------------CEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCS
T ss_pred ------------------------eEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEc-cCCC
Confidence 11224467799999999999999999999999999999976542 22211 2333
Q ss_pred cceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCc
Q psy15995 446 NQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPS 525 (683)
Q Consensus 446 ~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (683)
. .+.
T Consensus 198 ~----------------------------------------------------------------------------~v~ 201 (330)
T 2hes_X 198 G----------------------------------------------------------------------------TVW 201 (330)
T ss_dssp S----------------------------------------------------------------------------CEE
T ss_pred C----------------------------------------------------------------------------cEE
Confidence 3 345
Q ss_pred EEEEccC--CCEEEEEcCCCcEEEEEcCCCcc--------CcceeecCCcCeeEEEECCCCCEEEEEeCCCeEEEEECCC
Q psy15995 526 SISLDHE--HGLVAVGGADSKVHIYELNNKSL--------SPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 595 (683)
Q Consensus 526 ~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~--------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~ 595 (683)
+++|+|+ +.+|++++.|++|++||+.++.. .......|...|.+++|++++ +|++++.||.|++|+..+
T Consensus 202 ~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~ 280 (330)
T 2hes_X 202 SSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVD 280 (330)
T ss_dssp EEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEET
T ss_pred EEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCC
Confidence 5666666 55677777777777777654321 111111378899999999765 899999999999999987
Q ss_pred Cccccc-cceeeecc-cEEEEEecC--CCCeEEEeecCCcEEEEeCCC
Q psy15995 596 FELAHN-KEWGFHSA-KVNCVAWSP--DSALVASGSLDTTIIIWSLAS 639 (683)
Q Consensus 596 ~~~~~~-~~~~~h~~-~v~~~~~s~--d~~~l~~~~~d~~v~iw~~~~ 639 (683)
++.... ....+|.. .|++++|+| ++++||+|+.||+|++|++++
T Consensus 281 ~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 281 GEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred CceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 743111 11223776 899999999 789999999999999999865
No 44
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=2.5e-39 Score=357.82 Aligned_cols=518 Identities=10% Similarity=0.069 Sum_probs=376.7
Q ss_pred CCCeEEEeeCCCCCeEEEecCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCC------CCEEEEeCCCc
Q psy15995 44 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS------GKVRIWDTVNK 117 (683)
Q Consensus 44 ~~~~~~~~~s~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d------g~i~iwd~~~~ 117 (683)
.+.+...+||| +.|+++..+.|.+|++.+++. ..+.+|...|.+++|||||++||+++.+ ..|.+||+.++
T Consensus 14 ~~~~~~~~~S~--~~iaf~~~~~l~~~~~~gg~~-~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g 90 (1045)
T 1k32_A 14 PNLLLNPDIHG--DRIIFVCCDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG 90 (1045)
T ss_dssp CCCCEEEEEET--TEEEEEETTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred cceEeCcEEeC--CEEEEEECCcEEEEECCCCcE-EEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCC
Confidence 34567778885 589999889999999998875 4577899999999999999999987543 37999999887
Q ss_pred ccccccccccCCCCcccceeeeeecce-------eeeEeeccceEEEeecCC------ccEEEEeccccceeeecccccc
Q psy15995 118 EHILKNEFHPIGGPIKDIGTLLSLTSI-------RNILVLSIGFYIASGDIS------GKVRIWDTVNKEHILKNEFHPI 184 (683)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~i-------~~~~~s~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~ 184 (683)
+ ...+..+. ..+ ..++|+|||+.+++++.+ ..|.+|++.+++.... ..
T Consensus 91 ~-~~~lt~~~--------------~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l---~~- 151 (1045)
T 1k32_A 91 E-IKRITYFS--------------GKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NL- 151 (1045)
T ss_dssp E-EEECCCCC--------------EEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CS-
T ss_pred C-eEEcccCC--------------CcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEe---cC-
Confidence 5 34444443 334 789999999977777654 3588888877753221 11
Q ss_pred CCCeeEEEEcCCCCeEEEEecCC----------ceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeE
Q psy15995 185 GGPIKDIAWSPDNQRMVVVGEGR----------ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTI 254 (683)
Q Consensus 185 ~~~i~~~~~s~~~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 254 (683)
.....++|+| | .++++.... .....+|....+.....+.+|...+.++.|+++ . ++++++.++.+
T Consensus 152 -~~~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~-l~~~~~~dg~~ 226 (1045)
T 1k32_A 152 -GPATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-R-IYFITDIDGFG 226 (1045)
T ss_dssp -CSCSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-E-EEEEECTTSSC
T ss_pred -CCcceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-E-EEEEEeccCce
Confidence 2345778999 8 666654211 112456665544566677999999999999998 3 57778888999
Q ss_pred EEEcCCC-CceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCc---------cccCeEEEEE
Q psy15995 255 AVFEGPP-FKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPA---------HKGGVYAVAW 324 (683)
Q Consensus 255 ~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---------~~~~i~~~~~ 324 (683)
.+|.... +.....+..|. .+...+|+|+|+.|+.+. ++.|++|++...... .+.... |...+.+++|
T Consensus 227 ~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~ 303 (1045)
T 1k32_A 227 QIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDF 303 (1045)
T ss_dssp EEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEE
T ss_pred EEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceEee-eeccCcccccccccccccccceeee
Confidence 9997653 33444555554 466779999999888874 899999998544433 443211 3446899999
Q ss_pred c-cCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEE-EEecCCCCcceeeeeecc
Q psy15995 325 K-PDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFIS-YLDVNNPSTPIRVIKGHN 402 (683)
Q Consensus 325 ~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~-~~~~~~~~~~~~~~~~~~ 402 (683)
+ |||+.+++++ ++.+.+|+...+.... +..........+.++ +++.++.++.++.+. +|+..... ...+.+|.
T Consensus 304 S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~--~~~l~~~~ 378 (1045)
T 1k32_A 304 SPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK--AEKFEENL 378 (1045)
T ss_dssp EECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC--EEECCCCC
T ss_pred cCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC--ceEecCCc
Confidence 9 9999999887 7899999998776443 211122245566677 888888888888888 88987633 23334778
Q ss_pred ccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCce
Q psy15995 403 KPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEV 482 (683)
Q Consensus 403 ~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~ 482 (683)
..+..++|+|||++|++++.++.|++||+.+++...... .
T Consensus 379 ~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~-~--------------------------------------- 418 (1045)
T 1k32_A 379 GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-S--------------------------------------- 418 (1045)
T ss_dssp CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-C---------------------------------------
T ss_pred cceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc-C---------------------------------------
Confidence 899999999999999999999999999998776543321 1
Q ss_pred ecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCC----------cEEEEEcCC
Q psy15995 483 KLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADS----------KVHIYELNN 552 (683)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----------~i~i~d~~~ 552 (683)
+...+..++|+||+++|++++.++ .|++||+.+
T Consensus 419 -------------------------------------~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~ 461 (1045)
T 1k32_A 419 -------------------------------------REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG 461 (1045)
T ss_dssp -------------------------------------SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred -------------------------------------CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence 122457789999999998887654 899999998
Q ss_pred CccCcceeecCCcCeeEEEECCCCCEEEEEeCCCeEEEEECCCCcc----------------------------------
Q psy15995 553 KSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFEL---------------------------------- 598 (683)
Q Consensus 553 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~---------------------------------- 598 (683)
++.. ....+...+..++|+|||++|++++.++...+|+......
T Consensus 462 g~~~--~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (1045)
T 1k32_A 462 RKIF--AATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGE 539 (1045)
T ss_dssp TEEE--ECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCC
T ss_pred CcEE--EeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCcccccccc
Confidence 7632 3334777788999999999999998877766665432211
Q ss_pred -------ccccceeeecccEEEEEecCCCCeEEE-------------eecCCcEEEEeCCCCceeeEeecCCCCCCeeEE
Q psy15995 599 -------AHNKEWGFHSAKVNCVAWSPDSALVAS-------------GSLDTTIIIWSLASPAKHIIIKNAHPQSQITRL 658 (683)
Q Consensus 599 -------~~~~~~~~h~~~v~~~~~s~d~~~l~~-------------~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~l 658 (683)
.....+..|.+.+..++++||++++++ ...+..|.+||+.+++..... ..+.++
T Consensus 540 ~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~------~~v~~~ 613 (1045)
T 1k32_A 540 YDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK------NNLTDL 613 (1045)
T ss_dssp CCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE------EEEEEE
T ss_pred ccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee------cCcceE
Confidence 000111225677899999999988875 123457889999887754332 458899
Q ss_pred EEc-cCCeEEEeeCCCcEEEEeecc
Q psy15995 659 QWL-DNDLLVSVGQDCNTKIWEIAP 682 (683)
Q Consensus 659 ~~~-~~~~l~s~~~d~~v~vw~~~~ 682 (683)
+|+ |++.|++++.| .+++|+++.
T Consensus 614 ~~S~DG~~l~~~~~~-~i~~~d~~~ 637 (1045)
T 1k32_A 614 RLSADRKTVMVRKDD-GKIYTFPLE 637 (1045)
T ss_dssp EECTTSCEEEEEETT-SCEEEEESS
T ss_pred EECCCCCEEEEEcCC-cEEEEeCcc
Confidence 999 78899988876 799999853
No 45
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6.5e-40 Score=312.26 Aligned_cols=292 Identities=18% Similarity=0.335 Sum_probs=249.7
Q ss_pred ceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEe
Q psy15995 221 SVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYD 300 (683)
Q Consensus 221 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 300 (683)
....+.+|...|++++|+|++++ +++++.||.|++|+..+++....+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~-l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eEEEEcccCCcEEEEEECCCCCE-EEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence 44567899999999999999995 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecC
Q psy15995 301 GASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLS 380 (683)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 380 (683)
+++++.+..+.. |...|.+++|+|++++|++++.|+.|++||+++++.+..
T Consensus 94 ~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--------------------------- 144 (312)
T 4ery_A 94 VSSGKCLKTLKG--HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT--------------------------- 144 (312)
T ss_dssp TTTCCEEEEEEC--CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE---------------------------
T ss_pred CCCCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEE---------------------------
Confidence 999999888875 999999999999999999999999999999988765433
Q ss_pred CcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEE
Q psy15995 381 GFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYT 460 (683)
Q Consensus 381 g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 460 (683)
+..|..+|.+++|+|+++++++++.||.|++||+.+++........+
T Consensus 145 -----------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~---------------- 191 (312)
T 4ery_A 145 -----------------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD---------------- 191 (312)
T ss_dssp -----------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSS----------------
T ss_pred -----------------ecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccC----------------
Confidence 35678899999999999999999999999999998776544332111
Q ss_pred EEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEc
Q psy15995 461 CGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGG 540 (683)
Q Consensus 461 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 540 (683)
...+..++++|++++|++++
T Consensus 192 ------------------------------------------------------------~~~~~~~~~~~~~~~l~~~~ 211 (312)
T 4ery_A 192 ------------------------------------------------------------NPPVSFVKFSPNGKYILAAT 211 (312)
T ss_dssp ------------------------------------------------------------CCCEEEEEECTTSSEEEEEE
T ss_pred ------------------------------------------------------------CCceEEEEECCCCCEEEEEc
Confidence 12356788999999999999
Q ss_pred CCCcEEEEEcCCCccCcceeecCCcC---eeEEEECCCCCEEEEEeCCCeEEEEECCCCccccccceeeecccEEEEEec
Q psy15995 541 ADSKVHIYELNNKSLSPKAELDHLGP---VTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWS 617 (683)
Q Consensus 541 ~dg~i~i~d~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s 617 (683)
.|+.|++||+.+++...... +|... +......+++++|++++.||.|++||+.+++.... +.+|...|.+++|+
T Consensus 212 ~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~ 288 (312)
T 4ery_A 212 LDNTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK--LQGHTDVVISTACH 288 (312)
T ss_dssp TTTEEEEEETTTTEEEEEEC-SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEE--ECCCSSCEEEEEEC
T ss_pred CCCeEEEEECCCCcEEEEEE-ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhh--hhccCCcEEEEeec
Confidence 99999999998887653332 34333 23333446899999999999999999999887644 34499999999999
Q ss_pred CCCCeEEEee--cCCcEEEEeCC
Q psy15995 618 PDSALVASGS--LDTTIIIWSLA 638 (683)
Q Consensus 618 ~d~~~l~~~~--~d~~v~iw~~~ 638 (683)
|++++|++++ .|++|++|+.+
T Consensus 289 p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 289 PTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSSSEEEEEECTTTCCEEEEECC
T ss_pred CcCCceEEEEccCCccEEEecCC
Confidence 9999999987 69999999964
No 46
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=9e-40 Score=316.11 Aligned_cols=321 Identities=12% Similarity=0.147 Sum_probs=276.9
Q ss_pred cccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCc
Q psy15995 84 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISG 163 (683)
Q Consensus 84 h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~ 163 (683)
|.++|.+++|+|||++++++..++.+.+|+............|. ..|.+++|+|++++|++++ ||
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--------------~~v~~~~~~~~~~~l~~~~-dg 72 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHG--------------EVVCAVTISNPTRHVYTGG-KG 72 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCS--------------SCCCEEEECSSSSEEEEEC-BS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCC--------------CceEEEEEecCCcEEEEcC-CC
Confidence 57789999999999999998888777777665554333333333 7899999999999999999 99
Q ss_pred cEEEEeccccceeee---ccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCC--ceeeeecCCcCeEEEEee
Q psy15995 164 KVRIWDTVNKEHILK---NEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGT--SVGEISGQSKPINSCDFK 238 (683)
Q Consensus 164 ~i~iwd~~~~~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~ 238 (683)
.|++||+.+++.... .....+...|.+++|+|+++++++++.++. +.+|+.++++ ....+..|...|.+++|+
T Consensus 73 ~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~ 150 (337)
T 1gxr_A 73 CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST--LSIWDLAAPTPRIKAELTSSAPACYALAIS 150 (337)
T ss_dssp EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE--EEEEECCCC--EEEEEEECSSSCEEEEEEC
T ss_pred eEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCc--EEEEECCCCCcceeeecccCCCceEEEEEC
Confidence 999999988653322 222357789999999999999999887654 7888888877 667788999999999999
Q ss_pred cCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccC
Q psy15995 239 PSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGG 318 (683)
Q Consensus 239 ~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 318 (683)
|+++. +++++.|+.|++||+++++....+..|...|.+++|+|++++|++++.||.|++||+++++.+..+. +...
T Consensus 151 ~~~~~-l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~ 226 (337)
T 1gxr_A 151 PDSKV-CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD---FTSQ 226 (337)
T ss_dssp TTSSE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---CSSC
T ss_pred CCCCE-EEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec---CCCc
Confidence 99985 9999999999999999999999999999999999999999999999999999999999999888775 7788
Q ss_pred eEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeee
Q psy15995 319 VYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVI 398 (683)
Q Consensus 319 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~ 398 (683)
+.+++|+|+++++++++.++.+++||+.+++.. .+
T Consensus 227 v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~---------------------------------------------~~ 261 (337)
T 1gxr_A 227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY---------------------------------------------QL 261 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTSSCEE---------------------------------------------EE
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE---------------------------------------------EE
Confidence 999999999999999999999999999876532 23
Q ss_pred eeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEe--CCeEEEEEcCCeEEEEeC
Q psy15995 399 KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKAT--GELLYTCGIDDTIKQVDL 472 (683)
Q Consensus 399 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~~~~ 472 (683)
..|...|.+++|+|++++|++++.||.|++||+.+++..... .|...+.++.+. ++++++++.|+.|++|++
T Consensus 262 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe--cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 457889999999999999999999999999999998877443 478889999987 789999999999999986
No 47
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-40 Score=315.39 Aligned_cols=300 Identities=15% Similarity=0.219 Sum_probs=233.7
Q ss_pred CCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcc--cccccccccCCCCcccceeeeeecceeeeEeec
Q psy15995 74 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE--HILKNEFHPIGGPIKDIGTLLSLTSIRNILVLS 151 (683)
Q Consensus 74 ~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 151 (683)
+.+++..+++|.++|.+++|+|+ +||+|+.|++|++||+.++. ....+... .+...|.+++|+|
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~------------~h~~~v~~v~~sp 68 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDET------------AHKKAIRSVAWRP 68 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTT------------CCCSCEEEEEECT
T ss_pred ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecC------------CccCCEEEEEECC
Confidence 44567789999999999999998 99999999999999998753 22222110 0226799999999
Q ss_pred cceEEEeecCCccEEEEeccccc-----eeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCC----Cce
Q psy15995 152 IGFYIASGDISGKVRIWDTVNKE-----HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG----TSV 222 (683)
Q Consensus 152 ~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~----~~~ 222 (683)
++++||+++.|++|++||+.... ......+..|...|.+++|+|++++|++++.++. +.+|+.+.. +.+
T Consensus 69 ~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~--v~iwd~~~~~~~~~~~ 146 (330)
T 2hes_X 69 HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKS--VWIWETDESGEEYECI 146 (330)
T ss_dssp TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSC--EEEEECCTTCCCCEEE
T ss_pred CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCE--EEEEeccCCCCCeEEE
Confidence 99999999999999999986431 1123446678899999999999999999987764 788888432 456
Q ss_pred eeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCC--ceeeeccccccCeEEEEECCC--CCEEEEEcCCCcEEE
Q psy15995 223 GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF--KFKMTKQEHSRFVQAVRYSPS--GSHFASAGFDGKVFL 298 (683)
Q Consensus 223 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i 298 (683)
..+.+|...|.+++|+|++.. |++++.|++|++||..++ +.+..+.+|...|.+++|+|+ +..|++++.|++|++
T Consensus 147 ~~~~~h~~~v~~v~~~p~~~~-l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~i 225 (330)
T 2hes_X 147 SVLQEHSQDVKHVIWHPSEAL-LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRV 225 (330)
T ss_dssp EEECCCSSCEEEEEECSSSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEE
T ss_pred EEeccCCCceEEEEECCCCCE-EEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEE
Confidence 778899999999999999985 999999999999998766 577888999999999999998 678999999999999
Q ss_pred EeCCCC--------eeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEec
Q psy15995 299 YDGASA--------DLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQ 370 (683)
Q Consensus 299 w~~~~~--------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (683)
||+..+ .....+. ..|...|.+++|++++ +|++++.||.|++||..+++....
T Consensus 226 w~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~----------------- 286 (330)
T 2hes_X 226 WKYMGDDEDDQQEWVCEAILP-DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVF----------------- 286 (330)
T ss_dssp EEEEEECTTSCEEEEEEEECC-SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEE-----------------
T ss_pred EEecCCCccccceeEEeeecc-cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEE-----------------
Confidence 998654 2333332 1388899999999765 899999999999999865532100
Q ss_pred CCEEEEEecCCcEEEEecCCCCcceeeeeeccc-cEEEEEEeC--CCCEEEEEeCCCcEEEEcCCC
Q psy15995 371 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNK-PITALALSP--DRGTVFTGSHDGFITRWNAKT 433 (683)
Q Consensus 371 ~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~--~~~~l~~~~~dg~i~~w~~~~ 433 (683)
.....+|.. .|.+++|+| ++++|++++.||.|++|+++.
T Consensus 287 ------------------------~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 287 ------------------------AKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ------------------------EEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ------------------------eccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 011245766 899999999 789999999999999999864
No 48
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.4e-40 Score=316.97 Aligned_cols=317 Identities=21% Similarity=0.314 Sum_probs=251.6
Q ss_pred EEEEeC--CCCcccccccCcccceEEEEECCC-CcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecc
Q psy15995 67 VIIRNI--ENPAISDIYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTS 143 (683)
Q Consensus 67 i~v~~~--~~~~~~~~~~~h~~~v~~~~~s~d-~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (683)
++++.. ++.++..+|+||++.|++++|+|+ +++||||+.|++|+|||+.+.+......... ...+...
T Consensus 18 ~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~---------l~~h~~~ 88 (340)
T 4aow_A 18 LYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRA---------LRGHSHF 88 (340)
T ss_dssp --------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEE---------ECCCSSC
T ss_pred EEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEE---------EeCCCCC
Confidence 444443 344566779999999999999997 6899999999999999998765322211110 0012278
Q ss_pred eeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCC-ce
Q psy15995 144 IRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGT-SV 222 (683)
Q Consensus 144 i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~-~~ 222 (683)
|.+++|+|++++|++++.|+.|++|+......... ...+...+..+.+++++.++++++.++. +.+|+..... ..
T Consensus 89 V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~s~s~d~~--~~~~d~~~~~~~~ 164 (340)
T 4aow_A 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRR--FVGHTKDVLSVAFSSDNRQIVSGSRDKT--IKLWNTLGVCKYT 164 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE--EECCSSCEEEEEECTTSSCEEEEETTSC--EEEECTTSCEEEE
T ss_pred EEEEEECCCCCEEEEEcccccceEEeecccceeee--ecCCCCceeEEEEeecCccceeecCCCe--EEEEEeCCCceEE
Confidence 99999999999999999999999999998765433 3445578899999999999999887754 5677765443 34
Q ss_pred eeeecCCcCeEEEEeecCCCe-EEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeC
Q psy15995 223 GEISGQSKPINSCDFKPSRPF-RIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDG 301 (683)
Q Consensus 223 ~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 301 (683)
....+|...+..++|++++.. .+++++.|+.|++||.++++....+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 165 ~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~ 244 (340)
T 4aow_A 165 VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244 (340)
T ss_dssp ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEe
Confidence 456789999999999987643 4788999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCC
Q psy15995 302 ASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSG 381 (683)
Q Consensus 302 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 381 (683)
.+.+.+..+. +...+.+++|+|++. +++++.|+.|++||++++..+..+..
T Consensus 245 ~~~~~~~~~~---~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~------------------------- 295 (340)
T 4aow_A 245 NEGKHLYTLD---GGDIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQ------------------------- 295 (340)
T ss_dssp TTTEEEEEEE---CSSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECC-------------------------
T ss_pred ccCceeeeec---CCceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccc-------------------------
Confidence 9999988876 557899999999876 55666799999999998876655421
Q ss_pred cEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCC
Q psy15995 382 FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGE 435 (683)
Q Consensus 382 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~ 435 (683)
........+|...|++++|+|++++|++|+.||.|++||+++|.
T Consensus 296 ----------~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 296 ----------EVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ----------C-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred ----------cceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 11123345789999999999999999999999999999998875
No 49
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=9.2e-40 Score=314.88 Aligned_cols=288 Identities=13% Similarity=0.195 Sum_probs=237.8
Q ss_pred ccCCCeEEEee-----CC-CCCeEEEe-cCCeEEEEeCCCC-------cccccccCcccceEEEEECCCCcEEEEecCCC
Q psy15995 42 TQRGQPIVLGG-----DP-KGKNFLYT-NGNSVIIRNIENP-------AISDIYTEHSCAVNVAKYSPSGFYIASGDISG 107 (683)
Q Consensus 42 ~~~~~~~~~~~-----s~-~~~~l~~~-~~~~i~v~~~~~~-------~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg 107 (683)
.+.+.+.+++| +| |+++|+++ .|+.|++||+.+. .....+.+|...|++++|+|++++|++++.|+
T Consensus 19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~ 98 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDK 98 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTS
T ss_pred cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCC
Confidence 45678999998 77 99999988 5899999998754 34567889999999999999999999999999
Q ss_pred CEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCCC
Q psy15995 108 KVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGP 187 (683)
Q Consensus 108 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 187 (683)
+|++||+.+++.+..+..|. ..|.+++|+|++++|++++.|++|++||+.............|...
T Consensus 99 ~v~lwd~~~~~~~~~~~~h~--------------~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 164 (343)
T 2xzm_R 99 TLRLWDLRTGTTYKRFVGHQ--------------SEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDW 164 (343)
T ss_dssp EEEEEETTSSCEEEEEECCC--------------SCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSC
T ss_pred cEEEEECCCCcEEEEEcCCC--------------CcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCce
Confidence 99999999998887777665 7899999999999999999999999999985443333334467789
Q ss_pred eeEEEEcCCC----------CeEEEEecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEE
Q psy15995 188 IKDIAWSPDN----------QRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF 257 (683)
Q Consensus 188 i~~~~~s~~~----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw 257 (683)
|.+++|+|++ .++++++.++. +.+|+ ..++....+.+|...|.+++|+|++++ |++++.|+.|++|
T Consensus 165 v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~--i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~-l~sgs~dg~v~iw 240 (343)
T 2xzm_R 165 VSCVRYSPIMKSANKVQPFAPYFASVGWDGR--LKVWN-TNFQIRYTFKAHESNVNHLSISPNGKY-IATGGKDKKLLIW 240 (343)
T ss_dssp EEEEEECCCCCSCSCCCSSCCEEEEEETTSE--EEEEE-TTTEEEEEEECCSSCEEEEEECTTSSE-EEEEETTCEEEEE
T ss_pred eeeeeeccccccccccCCCCCEEEEEcCCCE--EEEEc-CCCceeEEEcCccccceEEEECCCCCE-EEEEcCCCeEEEE
Confidence 9999999987 67888777653 67887 445667788999999999999999996 9999999999999
Q ss_pred cCCCCceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEE--eccC---------CccccCeEEEEEcc
Q psy15995 258 EGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVS--ELGN---------PAHKGGVYAVAWKP 326 (683)
Q Consensus 258 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~---------~~~~~~i~~~~~~~ 326 (683)
|+...........+...|.+++|+|++++++++ .|+.|++|++.+++... .+.. .+|...|.+++|+|
T Consensus 241 d~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 319 (343)
T 2xzm_R 241 DILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNA 319 (343)
T ss_dssp ESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECS
T ss_pred ECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECC
Confidence 985433322223355679999999999887755 58889999998776543 3321 14778899999999
Q ss_pred CCCEEEEEECCCcEEEEECCCC
Q psy15995 327 DGTQLLTASGDKTCKLWDIETK 348 (683)
Q Consensus 327 ~~~~l~~~~~dg~i~iwd~~~~ 348 (683)
++++|++++.||.|++|+++++
T Consensus 320 ~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 320 LGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCeEEEecCCceEEEEEEEcc
Confidence 9999999999999999998654
No 50
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=9e-40 Score=326.21 Aligned_cols=326 Identities=10% Similarity=0.145 Sum_probs=274.0
Q ss_pred cceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccE
Q psy15995 86 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKV 165 (683)
Q Consensus 86 ~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i 165 (683)
..+++++|+|+|++|++++.|+.|++||+.+++....+..+ ..+....+++++++|++++.||.|
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~l~~~~~dg~i 121 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA---------------DYTAVDTAKLQMRRFILGTTEGDI 121 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC---------------CEEEEEEECSSSCEEEEEETTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC---------------CceEEEEEecCCCEEEEEECCCCE
Confidence 34568999999999999999999999999988766554433 334455789999999999999999
Q ss_pred EEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEE
Q psy15995 166 RIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRI 245 (683)
Q Consensus 166 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 245 (683)
++||+.+++.. ..+..|.+.|.+++|+|+++++++++.++. +.+|+.++++.+..+.+|...|.+++|+|+++. |
T Consensus 122 ~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~--i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l 196 (420)
T 3vl1_A 122 KVLDSNFNLQR--EIDQAHVSEITKLKFFPSGEALISSSQDMQ--LKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN-V 196 (420)
T ss_dssp EEECTTSCEEE--EETTSSSSCEEEEEECTTSSEEEEEETTSE--EEEEETTTCCCCEEEECCSSCEEEEEEETTTTE-E
T ss_pred EEEeCCCccee--eecccccCccEEEEECCCCCEEEEEeCCCe--EEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCE-E
Confidence 99999987754 344578899999999999999999887754 789999999999999999999999999999995 9
Q ss_pred EEeeCCCeEEEEcCCCCceeeeccc---ccc---------------------CeEEEEECCCCCEEEEEcCCCcEEEEeC
Q psy15995 246 ITGSEDNTIAVFEGPPFKFKMTKQE---HSR---------------------FVQAVRYSPSGSHFASAGFDGKVFLYDG 301 (683)
Q Consensus 246 ~~~~~d~~i~iw~~~~~~~~~~~~~---~~~---------------------~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 301 (683)
++++.|+.|++||+++++....+.. |.. .+.+++|+|++++|++++.||.|++||+
T Consensus 197 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 276 (420)
T 3vl1_A 197 LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNV 276 (420)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEET
T ss_pred EEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEEC
Confidence 9999999999999999998888764 333 4444556889999999999999999999
Q ss_pred CCCeeEEeccCCccccCeEEEEEccCCC-EEEEEECCCcEEEEECCCCce-eeEEEecCcceeceEEEEecCCEEEEEec
Q psy15995 302 ASADLVSELGNPAHKGGVYAVAWKPDGT-QLLTASGDKTCKLWDIETKSV-VSEFIMGNQVEDQQVSCLWQGDYLLTVSL 379 (683)
Q Consensus 302 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 379 (683)
++++....+.. .|...|.+++|+|+++ +|++++.||.|++||+++++. +..+...+......+ ..++++++++++.
T Consensus 277 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~ 354 (420)
T 3vl1_A 277 FSKEQTIQLPS-KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSGF 354 (420)
T ss_dssp TTCCEEEEECC-TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEETT
T ss_pred CCCceeEEccc-ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEecC
Confidence 99988777653 4788999999999998 999999999999999998754 566655455555555 5568889999999
Q ss_pred CCcEEEEecCCCCcc--------eeeeeeccccEEEEEEeCCCC---EEEEEeCCCcEEEEcCCC
Q psy15995 380 SGFISYLDVNNPSTP--------IRVIKGHNKPITALALSPDRG---TVFTGSHDGFITRWNAKT 433 (683)
Q Consensus 380 ~g~i~~~~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~---~l~~~~~dg~i~~w~~~~ 433 (683)
|+.+++|++.....+ ...+..|...|.+++|+|+++ .+++.+.+|.+.+|++..
T Consensus 355 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 355 DTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp TEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 999999999874322 234567888999999999999 788888899999999864
No 51
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.4e-38 Score=305.26 Aligned_cols=298 Identities=20% Similarity=0.337 Sum_probs=244.2
Q ss_pred CCCCceeeeccccccCeEEEEECCC-CCEEEEEcCCCcEEEEeCCCCe-----eEEeccCCccccCeEEEEEccCCCEEE
Q psy15995 259 GPPFKFKMTKQEHSRFVQAVRYSPS-GSHFASAGFDGKVFLYDGASAD-----LVSELGNPAHKGGVYAVAWKPDGTQLL 332 (683)
Q Consensus 259 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~ 332 (683)
.++.++..++++|.+.|++++|+|+ +++|++|+.|++|++||+.+.+ ....+. +|...|.+++|+|++++|+
T Consensus 25 ~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~--~h~~~V~~~~~s~dg~~l~ 102 (340)
T 4aow_A 25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR--GHSHFVSDVVISSDGQFAL 102 (340)
T ss_dssp -CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC--CCSSCEEEEEECTTSSEEE
T ss_pred CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe--CCCCCEEEEEECCCCCEEE
Confidence 4445566789999999999999998 5799999999999999987654 344554 4999999999999999999
Q ss_pred EEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeC
Q psy15995 333 TASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSP 412 (683)
Q Consensus 333 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 412 (683)
+++.|+.+++|+......... ...+...+....+++
T Consensus 103 s~~~d~~i~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~~~~ 138 (340)
T 4aow_A 103 SGSWDGTLRLWDLTTGTTTRR--------------------------------------------FVGHTKDVLSVAFSS 138 (340)
T ss_dssp EEETTSEEEEEETTTTEEEEE--------------------------------------------EECCSSCEEEEEECT
T ss_pred EEcccccceEEeecccceeee--------------------------------------------ecCCCCceeEEEEee
Confidence 999999999999987655432 234566788889999
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEe----CCeEEEEEcCCeEEEEeCCCCcccCCceecCCCC
Q psy15995 413 DRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKAT----GELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQP 488 (683)
Q Consensus 413 ~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~ 488 (683)
+++++++++.|+.+++||+............|...+..+.+. ...+++++.|+.|++||+.+....
T Consensus 139 ~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~---------- 208 (340)
T 4aow_A 139 DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK---------- 208 (340)
T ss_dssp TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEE----------
T ss_pred cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCcee----------
Confidence 999999999999999999988777777667889999999886 457889999999999999875321
Q ss_pred ceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCcceeecCCcCee
Q psy15995 489 RGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVT 568 (683)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 568 (683)
.....+...+.+++++|++++|++++.|+.|++||+.+.+..... .+...+.
T Consensus 209 --------------------------~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~--~~~~~v~ 260 (340)
T 4aow_A 209 --------------------------TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL--DGGDIIN 260 (340)
T ss_dssp --------------------------EEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE--ECSSCEE
T ss_pred --------------------------eEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee--cCCceEE
Confidence 111235567899999999999999999999999999988766333 4667899
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCcccccc-------ceeeecccEEEEEecCCCCeEEEeecCCcEEEEeCCCCc
Q psy15995 569 DCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNK-------EWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPA 641 (683)
Q Consensus 569 ~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~-------~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~~ 641 (683)
+++|+|++.+++ ++.|+.|++||+.++...... ...+|...|++++|+||+++|++|+.||.|+|||+++|+
T Consensus 261 ~~~~~~~~~~~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 261 ALCFSPNRYWLC-AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEECSSSSEEE-EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred eeecCCCCceee-ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 999999876554 556999999999887654322 223488999999999999999999999999999999876
No 52
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-38 Score=307.80 Aligned_cols=308 Identities=17% Similarity=0.276 Sum_probs=258.1
Q ss_pred cccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEE
Q psy15995 78 SDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIA 157 (683)
Q Consensus 78 ~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 157 (683)
...+.+|.+.|++++|+|++++||+++.||.|++||+.+++.+..+..|. ..|.+++|+|++++|+
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~--------------~~v~~~~~~~~~~~l~ 90 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHT--------------GTIWSIDVDCFTKYCV 90 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCS--------------SCEEEEEECTTSSEEE
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcC--------------CcEEEEEEcCCCCEEE
Confidence 34588999999999999999999999999999999999998888777665 7899999999999999
Q ss_pred eecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecC---CceEEEEEEccCCC-----------cee
Q psy15995 158 SGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG---RERFGHVFMSETGT-----------SVG 223 (683)
Q Consensus 158 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~---~~~~~~~~~~~~~~-----------~~~ 223 (683)
+++.||.|++||+.+++.+.... +...+.+++|+|+++++++++.+ ....+.+|+...+. ...
T Consensus 91 s~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~ 167 (369)
T 3zwl_B 91 TGSADYSIKLWDVSNGQCVATWK---SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIH 167 (369)
T ss_dssp EEETTTEEEEEETTTCCEEEEEE---CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSE
T ss_pred EEeCCCeEEEEECCCCcEEEEee---cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceee
Confidence 99999999999999988765544 56899999999999999998875 11237888887653 344
Q ss_pred eeecCCc--CeEEEEeecCCCeEEEEeeCCCeEEEEcCCC-CceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEe
Q psy15995 224 EISGQSK--PINSCDFKPSRPFRIITGSEDNTIAVFEGPP-FKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYD 300 (683)
Q Consensus 224 ~~~~~~~--~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 300 (683)
.+..|.. .+.+++|+|+++. +++++.||.|++||+.+ .+....+..|...|.+++|+|++++|++++.||.|++||
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d 246 (369)
T 3zwl_B 168 KIITHEGLDAATVAGWSTKGKY-IIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVD 246 (369)
T ss_dssp EEECCTTCCCEEEEEECGGGCE-EEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eccCCcCccceeEEEEcCCCCE-EEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEE
Confidence 5566666 9999999999995 99999999999999998 788888899999999999999999999999999999999
Q ss_pred CCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecC
Q psy15995 301 GASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLS 380 (683)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 380 (683)
+.+++.+..+. +...+..++|+|+++++++++.++...+|...... ..
T Consensus 247 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------------------------~~ 294 (369)
T 3zwl_B 247 VSTLQVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANE-----------------------------GK 294 (369)
T ss_dssp TTTCCEEEEEE---CSSCEEEEEECSSSSEEEEEECCC------------------------------------------
T ss_pred CCCCceeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEecCC-----------------------------Cc
Confidence 99999988886 77889999999999999999999866665543221 11
Q ss_pred CcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCc
Q psy15995 381 GFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGEN 436 (683)
Q Consensus 381 g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~ 436 (683)
..+++||... ......+.+|...|++++|+|++++|++++.||.|++|++..+..
T Consensus 295 ~~i~~~d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 295 FEARFYHKIF-EEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp CEEEEEETTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred ceeEEEecCC-CcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence 2456677665 345566788999999999999999999999999999999986543
No 53
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=7.8e-38 Score=316.23 Aligned_cols=331 Identities=17% Similarity=0.228 Sum_probs=271.2
Q ss_pred eEEEeeCCCCCeEEEe-cCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCccccccccc
Q psy15995 47 PIVLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 125 (683)
Q Consensus 47 ~~~~~~s~~~~~l~~~-~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~ 125 (683)
+.++.+ ++++|+++ .++.|++||+.+++.+..+.+|.+.|++++|+|++ +|++|+.||+|++||+.+++.+..+..
T Consensus 125 ~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~ 201 (464)
T 3v7d_B 125 ITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEG 201 (464)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECC
Confidence 455554 56788877 68999999999999999999999999999999998 999999999999999999988877766
Q ss_pred ccCCCCcccceeeeeecceeeeEee--ccceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEE
Q psy15995 126 HPIGGPIKDIGTLLSLTSIRNILVL--SIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV 203 (683)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~s--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 203 (683)
|. ..|.+++|+ +++.+|++++.|+.|++||+.+++........ .....+.+.|++.
T Consensus 202 h~--------------~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~----- 259 (464)
T 3v7d_B 202 HN--------------STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE---HDYPLVFHTPEEN----- 259 (464)
T ss_dssp CS--------------SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC---------CCSSEEESCGGGC-----
T ss_pred CC--------------CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccccccc---CCcceEeeccCCC-----
Confidence 65 778999998 57899999999999999999887644322211 1122222233221
Q ss_pred ecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCC
Q psy15995 204 GEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPS 283 (683)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~ 283 (683)
......+.+|...+.++ +++++ .+++++.|+.|++||+.+++.+..+.+|...|.+++|+|+
T Consensus 260 ---------------~~~~~~~~~~~~~v~~~--~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 321 (464)
T 3v7d_B 260 ---------------PYFVGVLRGHMASVRTV--SGHGN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE 321 (464)
T ss_dssp ---------------TTEEEEECCCSSCEEEE--EEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT
T ss_pred ---------------eEEEEEccCccceEEEE--cCCCC-EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCC
Confidence 22344567888888887 45566 4999999999999999999999999999999999999999
Q ss_pred CCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceec
Q psy15995 284 GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQ 363 (683)
Q Consensus 284 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (683)
++++++++.||.|++||+++++.+..+.. |...|.+++|+ ++++++++.||.|++||+.++......
T Consensus 322 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~--------- 388 (464)
T 3v7d_B 322 RKRCISASMDTTIRIWDLENGELMYTLQG--HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY--------- 388 (464)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECC--CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE---------
T ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEeC--CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee---------
Confidence 99999999999999999999999999876 99999999997 579999999999999999876543221
Q ss_pred eEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCcceeccCC
Q psy15995 364 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAG 443 (683)
Q Consensus 364 ~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~ 443 (683)
.|...+..++++|+++++++++ ||.|++||+.+++........
T Consensus 389 ------------------------------------~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~ 431 (464)
T 3v7d_B 389 ------------------------------------HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILK 431 (464)
T ss_dssp ------------------------------------ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTT
T ss_pred ------------------------------------cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhcc
Confidence 2455677789999999999998 899999999999998876677
Q ss_pred CCcceeEEEEeCCeEEEEEc-CCeEEEE
Q psy15995 444 HGNQINGMKATGELLYTCGI-DDTIKQV 470 (683)
Q Consensus 444 ~~~~v~~~~~~~~~l~~~~~-d~~i~~~ 470 (683)
+...|.++.++++.+++++. |+.+.+|
T Consensus 432 ~~~~v~~v~~~~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 432 DADQIWSVNFKGKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp TCSEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred CCCcEEEEEecCCEEEEEEEeCCeEEEE
Confidence 89999999999777766654 5544443
No 54
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-39 Score=324.31 Aligned_cols=353 Identities=10% Similarity=0.068 Sum_probs=265.5
Q ss_pred EeeCCCCCeEEEecCCeEEEEeCCCCcccccc-cCcccceEEEEECC-CCcEEEEecCCCCEEEEeCCCccccccccccc
Q psy15995 50 LGGDPKGKNFLYTNGNSVIIRNIENPAISDIY-TEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHP 127 (683)
Q Consensus 50 ~~~s~~~~~l~~~~~~~i~v~~~~~~~~~~~~-~~h~~~v~~~~~s~-d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~ 127 (683)
..|+|+++.++.+. .|+ .+++.+..+ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+.+.....
T Consensus 33 ~~f~~~~~~~~~~~-----~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~---- 102 (437)
T 3gre_A 33 KEFGPIQEIVRSPN-----MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVY---- 102 (437)
T ss_dssp GGGCCCCCCCCCCC-----GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCC----
T ss_pred hhcCCccccccccc-----ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccc----
Confidence 35899999988765 487 455666777 89999999999999 9999999999999999998762111000
Q ss_pred CCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEecc---cccee--------eeccccc--cCCCeeEEE--
Q psy15995 128 IGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTV---NKEHI--------LKNEFHP--IGGPIKDIA-- 192 (683)
Q Consensus 128 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~---~~~~~--------~~~~~~~--~~~~i~~~~-- 192 (683)
.......+...|.+++|+|++.+|++++.||.|++||+. +++.. ....+.. +...+.++.
T Consensus 103 -----~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 177 (437)
T 3gre_A 103 -----SSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAF 177 (437)
T ss_dssp -----SCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEE
T ss_pred -----ceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEE
Confidence 001111234789999999999999999999999999995 33322 2222222 456677777
Q ss_pred EcCCCCeEEEEecCCceEEEEEEccCCCceeeeec--CCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeecc-
Q psy15995 193 WSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISG--QSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ- 269 (683)
Q Consensus 193 ~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~- 269 (683)
+++++.++++++.++. +.+|+..+++.+..+.+ |...|++++|+|++.+ +++++.||.|++||+++++.+..+.
T Consensus 178 ~~~~~~~l~~~~~d~~--i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~ 254 (437)
T 3gre_A 178 VNEEKSLLVALTNLSR--VIIFDIRTLERLQIIENSPRHGAVSSICIDEECCV-LILGTTRGIIDIWDIRFNVLIRSWSF 254 (437)
T ss_dssp ECSSCEEEEEEETTSE--EEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCE-EEEEETTSCEEEEETTTTEEEEEEBC
T ss_pred EcCCCCEEEEEeCCCe--EEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCE-EEEEcCCCeEEEEEcCCccEEEEEec
Confidence 6688999999887754 78999999999999998 8999999999999985 9999999999999999999888875
Q ss_pred ccccCeEEEEEC----CCCCEEEEEcCCCcEEEEeCCCCeeEEeccCC------------------------ccccCeEE
Q psy15995 270 EHSRFVQAVRYS----PSGSHFASAGFDGKVFLYDGASADLVSELGNP------------------------AHKGGVYA 321 (683)
Q Consensus 270 ~~~~~v~~~~~~----~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~------------------------~~~~~i~~ 321 (683)
.|...|.+++|+ |++.+|++++.||.|++||+++++.+..+... .|...|.+
T Consensus 255 ~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 334 (437)
T 3gre_A 255 GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALST 334 (437)
T ss_dssp TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCC
T ss_pred CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEE
Confidence 788899999665 46779999999999999999999877766531 16677999
Q ss_pred EEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcce--eceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeee
Q psy15995 322 VAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVE--DQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIK 399 (683)
Q Consensus 322 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~ 399 (683)
++|+ ++++|++++.|+.|++||+.+++....+....... .......+...+++.. ++... ........
T Consensus 335 l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~ 404 (437)
T 3gre_A 335 ISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRK--------MKRTS-THSVDDSL 404 (437)
T ss_dssp EEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEE--------CC------------
T ss_pred EEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEe--------ccccc-ccccCccc
Confidence 9999 77899999999999999999998887775432211 1111222222222221 11211 22234456
Q ss_pred eccccEEEEEEeCC--CCEEEEEeCCCcEEEEc
Q psy15995 400 GHNKPITALALSPD--RGTVFTGSHDGFITRWN 430 (683)
Q Consensus 400 ~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~w~ 430 (683)
.|...|++++++++ +.+|++|+.||.|++|+
T Consensus 405 ~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 405 YHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 69999999999998 78999999999999995
No 55
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-38 Score=307.27 Aligned_cols=304 Identities=17% Similarity=0.212 Sum_probs=259.8
Q ss_pred eeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeC
Q psy15995 222 VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDG 301 (683)
Q Consensus 222 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 301 (683)
...+.+|...|++++|+|++++ |++++.||.|++||+.+++....+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDL-LFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCE-EEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred cEEEEEeeceEEEEEEcCCCCE-EEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 3457899999999999999995 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEeccCCccccCeEEEEEccCCCEEEEEECC-----CcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEE
Q psy15995 302 ASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD-----KTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLT 376 (683)
Q Consensus 302 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 376 (683)
.+++.+..+. +...+.+++|+|+++++++++.+ +.+++||+........+....
T Consensus 104 ~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~------------------ 162 (369)
T 3zwl_B 104 SNGQCVATWK---SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVS------------------ 162 (369)
T ss_dssp TTCCEEEEEE---CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEEC------------------
T ss_pred CCCcEEEEee---cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccc------------------
Confidence 9999988886 78899999999999999999998 999999998765443332111
Q ss_pred EecCCcEEEEecCCCCcceeeeeeccc--cEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC-CcceeccCCCCcceeEEEE
Q psy15995 377 VSLSGFISYLDVNNPSTPIRVIKGHNK--PITALALSPDRGTVFTGSHDGFITRWNAKTG-ENDRVQGAGHGNQINGMKA 453 (683)
Q Consensus 377 ~~~~g~i~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~-~~~~~~~~~~~~~v~~~~~ 453 (683)
......+..|.. .+.+++|+|+++++++++.||.|++||+.+. +..... ..
T Consensus 163 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~---------- 216 (369)
T 3zwl_B 163 ---------------EEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSI-DL---------- 216 (369)
T ss_dssp ---------------SSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEE-EC----------
T ss_pred ---------------cceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEE-ec----------
Confidence 223344555666 8999999999999999999999999999873 222221 11
Q ss_pred eCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCC
Q psy15995 454 TGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEH 533 (683)
Q Consensus 454 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (683)
+...+.+++++|++
T Consensus 217 ------------------------------------------------------------------~~~~v~~~~~~~~~ 230 (369)
T 3zwl_B 217 ------------------------------------------------------------------HEKSISDMQFSPDL 230 (369)
T ss_dssp ------------------------------------------------------------------CSSCEEEEEECTTS
T ss_pred ------------------------------------------------------------------CCCceeEEEECCCC
Confidence 22356788999999
Q ss_pred CEEEEEcCCCcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEeCCC--------------eEEEEECCCCccc
Q psy15995 534 GLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHR--------------KVVLYRVPDFELA 599 (683)
Q Consensus 534 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--------------~i~i~~~~~~~~~ 599 (683)
++|++++.|+.|++||+.+++...... +...+.+++|+|+++++++++.++ .+++||..+++..
T Consensus 231 ~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 308 (369)
T 3zwl_B 231 TYFITSSRDTNSFLVDVSTLQVLKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI 308 (369)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEE
T ss_pred CEEEEecCCceEEEEECCCCceeeeec--CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcch
Confidence 999999999999999999887764443 778999999999999999999888 8999999998876
Q ss_pred cccceeeecccEEEEEecCCCCeEEEeecCCcEEEEeCCCCcee
Q psy15995 600 HNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKH 643 (683)
Q Consensus 600 ~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~~~~ 643 (683)
.. +.+|...|++++|+|++++|++++.||.|++|+++++...
T Consensus 309 ~~--~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 309 GR--VQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFD 350 (369)
T ss_dssp EE--EECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHT
T ss_pred hh--eecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccch
Confidence 54 3449999999999999999999999999999999876543
No 56
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.1e-37 Score=310.95 Aligned_cols=325 Identities=18% Similarity=0.262 Sum_probs=272.1
Q ss_pred ceeeeecCCcCe-EEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEE
Q psy15995 221 SVGEISGQSKPI-NSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLY 299 (683)
Q Consensus 221 ~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 299 (683)
....+.+|...+ .++.++ ++ .+++|+.||+|++||..+++....+.+|...|.+++|+|++ .+++++.||.|++|
T Consensus 113 ~~~~l~~h~~~v~~~~~~~--~~-~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQFE--DN-YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp EEEEEECCSSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred ceEEEcCCCCCcEEEEEEC--CC-EEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 345678898885 566664 44 59999999999999999999999999999999999999988 89999999999999
Q ss_pred eCCCCeeEEeccCCccccCeEEEEEc--cCCCEEEEEECCCcEEEEECCCCceeeEE--------------------Eec
Q psy15995 300 DGASADLVSELGNPAHKGGVYAVAWK--PDGTQLLTASGDKTCKLWDIETKSVVSEF--------------------IMG 357 (683)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------------------~~~ 357 (683)
|+++++.+..+.. |...|.+++|+ ++++++++++.|+.+++||+.++...... ...
T Consensus 189 d~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (464)
T 3v7d_B 189 DIKKGCCTHVFEG--HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 266 (464)
T ss_dssp ETTTTEEEEEECC--CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred ECCCCcEEEEECC--CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence 9999999988875 99999999998 57789999999999999999987644321 111
Q ss_pred CcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCcc
Q psy15995 358 NQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGEND 437 (683)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~ 437 (683)
.........+.++++++++++.++.|++||+.. ...+..+.+|...|.+++|+|+++++++++.||.|++||+.+++..
T Consensus 267 ~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~ 345 (464)
T 3v7d_B 267 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQ-MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM 345 (464)
T ss_dssp CCCSSCEEEEEEETTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred cCccceEEEEcCCCCEEEEEeCCCeEEEEECCC-CcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence 222233445578999999999999999999987 5667778899999999999999999999999999999999998887
Q ss_pred eeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeee
Q psy15995 438 RVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSS 517 (683)
Q Consensus 438 ~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (683)
... .+|...|.++.++++++++++.|+.|++||+.+.. ....
T Consensus 346 ~~~-~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~-------------------------------------~~~~ 387 (464)
T 3v7d_B 346 YTL-QGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS-------------------------------------RKFS 387 (464)
T ss_dssp EEE-CCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCC-------------------------------------EEEE
T ss_pred EEE-eCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCc-------------------------------------eeee
Confidence 776 57999999999999999999999999999998642 2222
Q ss_pred ecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEeCCCeEEEEE
Q psy15995 518 LPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYR 592 (683)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~ 592 (683)
......+..++++++++++++++ ||.|++||+.+++........+...|.+++|+ +..++++++.++.+.+|-
T Consensus 388 ~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 388 YHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred ecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 33455678889999999999998 89999999999988866566789999999997 445556666777655543
No 57
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-39 Score=323.04 Aligned_cols=343 Identities=12% Similarity=0.069 Sum_probs=241.7
Q ss_pred CCCeeEEEEcCCC---------CeEEEEecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEE
Q psy15995 185 GGPIKDIAWSPDN---------QRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIA 255 (683)
Q Consensus 185 ~~~i~~~~~s~~~---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 255 (683)
.+.|.+++|+|++ ++||++..... . -..+|+++. +++++.|++|+
T Consensus 133 ~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~----------~---------------~~~~~~~~~-laS~s~D~tI~ 186 (524)
T 2j04_B 133 GGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYM----------D---------------EPLNEHLEM-FDKEKHSSCIQ 186 (524)
T ss_dssp CC--CCCSCEEECCCCSSCSSEEEEEEEEEC--------------------------------------------CEEEE
T ss_pred CCceeEEEecccCCCCccCcCCeEEEEEEeccc----------C---------------Cccchhhhh-hccCCCCceEE
Confidence 5889999999987 67887765421 0 013678874 89999999999
Q ss_pred EEcCCCCcee----eeccccccCeEEEEECCC------CCEEEEEcCCCcEEEEeCCCCeeE-----------EeccCCc
Q psy15995 256 VFEGPPFKFK----MTKQEHSRFVQAVRYSPS------GSHFASAGFDGKVFLYDGASADLV-----------SELGNPA 314 (683)
Q Consensus 256 iw~~~~~~~~----~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~iw~~~~~~~~-----------~~~~~~~ 314 (683)
+|++.+++.. ..+..|.+.|.+++|+|+ +.+||+++.||+|++||+.++... ..+. .
T Consensus 187 iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~--~ 264 (524)
T 2j04_B 187 IFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS--L 264 (524)
T ss_dssp EEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC--C
T ss_pred EEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE--c
Confidence 9998777642 345667889999999997 579999999999999999876421 2333 3
Q ss_pred cccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcc
Q psy15995 315 HKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTP 394 (683)
Q Consensus 315 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~ 394 (683)
|...|.+++|+++ ..|++|+.||+|++||++++.. +
T Consensus 265 h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~-------------------------------------------~ 300 (524)
T 2j04_B 265 ADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEV-------------------------------------------P 300 (524)
T ss_dssp TTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSS-------------------------------------------C
T ss_pred CCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCC-------------------------------------------c
Confidence 8899999999986 4899999999999999986421 1
Q ss_pred eeeeeeccccEEEE--EEeCCC-CEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEe
Q psy15995 395 IRVIKGHNKPITAL--ALSPDR-GTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVD 471 (683)
Q Consensus 395 ~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~ 471 (683)
...+.+|...|.++ +|+|++ .+|++++.|++|++||+++++...... +|.
T Consensus 301 ~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~-~~~-------------------------- 353 (524)
T 2j04_B 301 SFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV-SRF-------------------------- 353 (524)
T ss_dssp SEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE-EEC--------------------------
T ss_pred eEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc-ccc--------------------------
Confidence 23457799999999 568887 899999999999999998765433221 010
Q ss_pred CCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcC
Q psy15995 472 LSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELN 551 (683)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 551 (683)
....+.+++|+|+++.+++++.|++|++||+.
T Consensus 354 ------------------------------------------------~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~ 385 (524)
T 2j04_B 354 ------------------------------------------------RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSR 385 (524)
T ss_dssp ------------------------------------------------SCCSCCCEEEETTTTEEEEECSSSEEEEEETT
T ss_pred ------------------------------------------------ccCcccceEeCCCcCeEEEeCCCCcEEEEECc
Confidence 00135778999999999999999999999999
Q ss_pred CCccCcceeecCCcCeeEEEECCCCCEEEEEeCCCeEEEEECCCCccccccce---eeecccEEEEEecCCCCeEEEeec
Q psy15995 552 NKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEW---GFHSAKVNCVAWSPDSALVASGSL 628 (683)
Q Consensus 552 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~---~~h~~~v~~~~~s~d~~~l~~~~~ 628 (683)
++..... ..+|.+.|++++|+|++++|++|+.|++|++||+... ....... ..+...+.+++|+|+++.+.. ..
T Consensus 386 ~~~~~~~-l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~ 462 (524)
T 2j04_B 386 AAFAVHP-LVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DS 462 (524)
T ss_dssp CTTCCEE-EEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEE-CC
T ss_pred cccccee-eecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEc-cC
Confidence 8776533 3469999999999999999999999999999998764 2221110 002235789999999985532 22
Q ss_pred CCcEEEEeCC-CCceeeEeecCCCCCCeeEEEEccC----CeEEEeeCCCcEEEEeec
Q psy15995 629 DTTIIIWSLA-SPAKHIIIKNAHPQSQITRLQWLDN----DLLVSVGQDCNTKIWEIA 681 (683)
Q Consensus 629 d~~v~iw~~~-~~~~~~~~~~~~~~~~v~~l~~~~~----~~l~s~~~d~~v~vw~~~ 681 (683)
.+++|+.. ++.....+.. |...|.+|+|+++ ..+++|+.||.|+||+++
T Consensus 463 --~~~~~~~~~~g~~~~~l~g--h~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 463 --SYEVYPLTVNDVSKAKIDA--HGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp --CCCCCC---------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred --CceecccccCCcceeeecC--CCceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 24445443 3455555544 7899999999943 389999999999999985
No 58
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.8e-37 Score=311.13 Aligned_cols=326 Identities=18% Similarity=0.287 Sum_probs=278.9
Q ss_pred CcccccccCcccce-EEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccc
Q psy15995 75 PAISDIYTEHSCAV-NVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIG 153 (683)
Q Consensus 75 ~~~~~~~~~h~~~v-~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 153 (683)
.+....+.+|.+.| ++ ++++|++|++|+.||.|++||+.+++.+..+..|. ..|.+++++ +
T Consensus 108 ~~~~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--------------~~v~~~~~~--~ 169 (445)
T 2ovr_B 108 LKSPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT--------------GGVWSSQMR--D 169 (445)
T ss_dssp CCCCEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCS--------------SCEEEEEEE--T
T ss_pred cceeEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCC--------------CCEEEEEec--C
Confidence 34456788999875 55 45678999999999999999999999888877665 678888887 6
Q ss_pred eEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeecCCcCeE
Q psy15995 154 FYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPIN 233 (683)
Q Consensus 154 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 233 (683)
.+|++++.||+|++||+.+++.+ ..+..|...|.+++|+ ++.+++++.++. +.+|+..+++.+..+.+|...|.
T Consensus 170 ~~l~s~~~dg~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~--~~~l~s~s~dg~--i~~wd~~~~~~~~~~~~~~~~v~ 243 (445)
T 2ovr_B 170 NIIISGSTDRTLKVWNAETGECI--HTLYGHTSTVRCMHLH--EKRVVSGSRDAT--LRVWDIETGQCLHVLMGHVAAVR 243 (445)
T ss_dssp TEEEEEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEEE--TTEEEEEETTSE--EEEEESSSCCEEEEEECCSSCEE
T ss_pred CEEEEEeCCCeEEEEECCcCcEE--EEECCCCCcEEEEEec--CCEEEEEeCCCE--EEEEECCCCcEEEEEcCCcccEE
Confidence 69999999999999999998765 3455778999999995 567888776654 78999999999999999999999
Q ss_pred EEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCC
Q psy15995 234 SCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP 313 (683)
Q Consensus 234 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 313 (683)
++.| ++. .+++++.||.|++||.++++....+.+|...|.+++| +++++++++.||.|++||+++++.+..+..
T Consensus 244 ~~~~--~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~- 317 (445)
T 2ovr_B 244 CVQY--DGR-RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTG- 317 (445)
T ss_dssp EEEE--CSS-CEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECC-
T ss_pred EEEE--CCC-EEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcC-
Confidence 9999 455 4999999999999999999999999999999999999 788999999999999999999999988865
Q ss_pred ccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCc
Q psy15995 314 AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPST 393 (683)
Q Consensus 314 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~ 393 (683)
|...+.++.++ ++++++++.||.|++||+++++.+..+............+.++++++++++.+|.|++||+..+.
T Consensus 318 -~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~- 393 (445)
T 2ovr_B 318 -HQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGE- 393 (445)
T ss_dssp -CCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCC-
T ss_pred -CcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCc-
Confidence 88899988875 67999999999999999999998888765433344445555678999999999999999998854
Q ss_pred ceeee-----eeccccEEEEEEeCCCCEEEEEeCCCc----EEEEcCCCC
Q psy15995 394 PIRVI-----KGHNKPITALALSPDRGTVFTGSHDGF----ITRWNAKTG 434 (683)
Q Consensus 394 ~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~----i~~w~~~~~ 434 (683)
.+..+ ..|...|.+++|+|++.++++++.||. |.+||+...
T Consensus 394 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 394 FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred eeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 44444 468889999999999999999999998 999998754
No 59
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.7e-37 Score=309.93 Aligned_cols=324 Identities=20% Similarity=0.299 Sum_probs=263.8
Q ss_pred ceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEe
Q psy15995 221 SVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYD 300 (683)
Q Consensus 221 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 300 (683)
....+.+|.+.+.. ++.++++ .+++++.||.|++||..+++....+.+|...|.+++|+ ++.+++++.||.|++||
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWN 185 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred eeEEecccCCCcEE-EEEEcCC-EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEE
Confidence 45678899887533 2444566 49999999999999999999999999999999999997 56999999999999999
Q ss_pred CCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecC
Q psy15995 301 GASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLS 380 (683)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 380 (683)
+.+++.+..+.. |...|.+++|+ ++.+++++.||.|++||+.+++.+..
T Consensus 186 ~~~~~~~~~~~~--h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~--------------------------- 234 (445)
T 2ovr_B 186 AETGECIHTLYG--HTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHV--------------------------- 234 (445)
T ss_dssp TTTTEEEEEECC--CSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEE---------------------------
T ss_pred CCcCcEEEEECC--CCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEE---------------------------
Confidence 999999988875 99999999996 56899999999999999998765443
Q ss_pred CcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEE
Q psy15995 381 GFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYT 460 (683)
Q Consensus 381 g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 460 (683)
+.+|...|.++++ +++++++++.||.|++||+.+++..... ..|...+.++.+++..+++
T Consensus 235 -----------------~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~l~~ 294 (445)
T 2ovr_B 235 -----------------LMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTL-QGHTNRVYSLQFDGIHVVS 294 (445)
T ss_dssp -----------------EECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEE-CCCSSCEEEEEECSSEEEE
T ss_pred -----------------EcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEe-cCCCCceEEEEECCCEEEE
Confidence 3457778888887 6778888888888888888877766655 4677888888888888888
Q ss_pred EEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeee-cCCCCCcEEEEccCCCEEEEE
Q psy15995 461 CGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSL-PIDYEPSSISLDHEHGLVAVG 539 (683)
Q Consensus 461 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 539 (683)
++.|+.|++||+.+.... ..+ .+...+.++. +++++++++
T Consensus 295 ~~~d~~i~i~d~~~~~~~-------------------------------------~~~~~~~~~v~~~~--~~~~~l~~~ 335 (445)
T 2ovr_B 295 GSLDTSIRVWDVETGNCI-------------------------------------HTLTGHQSLTSGME--LKDNILVSG 335 (445)
T ss_dssp EETTSCEEEEETTTCCEE-------------------------------------EEECCCCSCEEEEE--EETTEEEEE
T ss_pred EeCCCeEEEEECCCCCEE-------------------------------------EEEcCCcccEEEEE--EeCCEEEEE
Confidence 888888888888765321 111 1222334444 467799999
Q ss_pred cCCCcEEEEEcCCCccCcceee--cCCcCeeEEEECCCCCEEEEEeCCCeEEEEECCCCccccccc---eeeecccEEEE
Q psy15995 540 GADSKVHIYELNNKSLSPKAEL--DHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKE---WGFHSAKVNCV 614 (683)
Q Consensus 540 ~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~---~~~h~~~v~~~ 614 (683)
+.||.|++||+.+++....... .|...|++++|+ +++|++++.||.|++||+.+++.+.... ...|.+.|.++
T Consensus 336 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 413 (445)
T 2ovr_B 336 NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI 413 (445)
T ss_dssp ETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEE
T ss_pred eCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEE
Confidence 9999999999988876544432 378899999995 6899999999999999999998765441 12388899999
Q ss_pred EecCCCCeEEEeecCCc----EEEEeCCCC
Q psy15995 615 AWSPDSALVASGSLDTT----IIIWSLASP 640 (683)
Q Consensus 615 ~~s~d~~~l~~~~~d~~----v~iw~~~~~ 640 (683)
+|+|++.+||+|+.||+ |.+||+...
T Consensus 414 ~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 414 RASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 99999999999999998 999999764
No 60
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.7e-38 Score=312.34 Aligned_cols=305 Identities=13% Similarity=0.136 Sum_probs=245.8
Q ss_pred EEEeCCCCcccccccCcccceEEEEECCCC-cEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceee
Q psy15995 68 IIRNIENPAISDIYTEHSCAVNVAKYSPSG-FYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRN 146 (683)
Q Consensus 68 ~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~-~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 146 (683)
.+|+.+..+....+.+|...|++++|+|++ ++||+|+.||.|+|||+.+++....+.... +...|.+
T Consensus 56 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------h~~~v~~ 123 (383)
T 3ei3_B 56 FIRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMG------------PGDAITG 123 (383)
T ss_dssp HHHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCS------------TTCBEEE
T ss_pred ccccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCC------------cCCceeE
Confidence 345556667777889999999999999999 999999999999999999887666554321 1278999
Q ss_pred eEeec-cceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeee
Q psy15995 147 ILVLS-IGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEI 225 (683)
Q Consensus 147 ~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (683)
++|+| ++.+|++++.|+.|++||+.+...........+...|.+++|+|+++++++++.++. +.+|+. .++.+..+
T Consensus 124 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--i~i~d~-~~~~~~~~ 200 (383)
T 3ei3_B 124 MKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGR--LLLLGL-DGHEIFKE 200 (383)
T ss_dssp EEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSE--EEEEET-TSCEEEEE
T ss_pred EEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCC--EEEEEC-CCCEEEEe
Confidence 99999 789999999999999999997543333333445578999999999999999887754 788887 67888899
Q ss_pred ecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCC----CceeeeccccccCeEEEEECC-CCCEEEEEcCCCcEEEEe
Q psy15995 226 SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP----FKFKMTKQEHSRFVQAVRYSP-SGSHFASAGFDGKVFLYD 300 (683)
Q Consensus 226 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~ 300 (683)
.+|...|.+++|+|+++.++++++.|+.|++||+++ ......+ +|...|.+++|+| ++++|++++.|+.|++||
T Consensus 201 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd 279 (383)
T 3ei3_B 201 KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYS 279 (383)
T ss_dssp ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEE
T ss_pred ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEE
Confidence 999999999999999985699999999999999887 5555555 6999999999999 999999999999999999
Q ss_pred CCCCeeEEeccCC-----ccc----------cCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceE
Q psy15995 301 GASADLVSELGNP-----AHK----------GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQV 365 (683)
Q Consensus 301 ~~~~~~~~~~~~~-----~~~----------~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (683)
+++++....+... .|. ..+..++|+|++++ +++.|+.|++||+.+++.+..+..
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~--------- 348 (383)
T 3ei3_B 280 SYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRD--------- 348 (383)
T ss_dssp TTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECB---------
T ss_pred CCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecC---------
Confidence 9988765554321 012 34455666666665 667888999999888776544311
Q ss_pred EEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCC
Q psy15995 366 SCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 433 (683)
Q Consensus 366 ~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~ 433 (683)
..|...+..++|+|++++|++++ |+.|++||+++
T Consensus 349 ---------------------------------~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 349 ---------------------------------PNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ---------------------------------TTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred ---------------------------------CCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 11456778889999999999997 99999999864
No 61
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=9.3e-38 Score=307.03 Aligned_cols=303 Identities=18% Similarity=0.223 Sum_probs=244.1
Q ss_pred EcCCCCceeeeccccccCeEEEEECCCC-CEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEcc-CCCEEEEE
Q psy15995 257 FEGPPFKFKMTKQEHSRFVQAVRYSPSG-SHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKP-DGTQLLTA 334 (683)
Q Consensus 257 w~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~ 334 (683)
|+....+....+.+|...|.+++|+|++ ++|++++.||.|++||+.+++....+....|...|.+++|+| ++++|+++
T Consensus 58 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 137 (383)
T 3ei3_B 58 RSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS 137 (383)
T ss_dssp HHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEE
T ss_pred ccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEE
Confidence 4445666777888999999999999999 899999999999999999988887776556999999999999 78999999
Q ss_pred ECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCC
Q psy15995 335 SGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDR 414 (683)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 414 (683)
+.|+.|++||++. .....+ .....|...|.+++|+|++
T Consensus 138 ~~d~~i~iwd~~~-~~~~~~-----------------------------------------~~~~~~~~~v~~~~~~~~~ 175 (383)
T 3ei3_B 138 SIRGATTLRDFSG-SVIQVF-----------------------------------------AKTDSWDYWYCCVDVSVSR 175 (383)
T ss_dssp ETTTEEEEEETTS-CEEEEE-----------------------------------------ECCCCSSCCEEEEEEETTT
T ss_pred eCCCEEEEEECCC-CceEEE-----------------------------------------eccCCCCCCeEEEEECCCC
Confidence 9999999999985 322222 1123356889999999999
Q ss_pred CEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeec
Q psy15995 415 GTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDID 494 (683)
Q Consensus 415 ~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (683)
++|++++.|+.|++||++ ++..... ..
T Consensus 176 ~~l~~~~~d~~i~i~d~~-~~~~~~~-~~--------------------------------------------------- 202 (383)
T 3ei3_B 176 QMLATGDSTGRLLLLGLD-GHEIFKE-KL--------------------------------------------------- 202 (383)
T ss_dssp TEEEEEETTSEEEEEETT-SCEEEEE-EC---------------------------------------------------
T ss_pred CEEEEECCCCCEEEEECC-CCEEEEe-cc---------------------------------------------------
Confidence 999999999999999984 3322221 11
Q ss_pred CCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCC-EEEEEcCCCcEEEEEcCCCccC--cceeecCCcCeeEEE
Q psy15995 495 ENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHG-LVAVGGADSKVHIYELNNKSLS--PKAELDHLGPVTDCS 571 (683)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~~~ 571 (683)
+...+.+++++|+++ ++++++.|+.|++||+.+.+.. .....+|...|++++
T Consensus 203 -------------------------h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 257 (383)
T 3ei3_B 203 -------------------------HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAY 257 (383)
T ss_dssp -------------------------SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEE
T ss_pred -------------------------CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEE
Confidence 223567889999998 8999999999999999874321 122336899999999
Q ss_pred ECC-CCCEEEEEeCCCeEEEEECCCCcccccccee-----ee----------cccEEEEEecCCCCeEEEeecCCcEEEE
Q psy15995 572 FSP-SNEYLVASDAHRKVVLYRVPDFELAHNKEWG-----FH----------SAKVNCVAWSPDSALVASGSLDTTIIIW 635 (683)
Q Consensus 572 ~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~-----~h----------~~~v~~~~~s~d~~~l~~~~~d~~v~iw 635 (683)
|+| ++++|++++.|+.|++||+.+++........ .| .+.+..++|+||+++ +++.|+.|++|
T Consensus 258 ~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iw 335 (383)
T 3ei3_B 258 FNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIY 335 (383)
T ss_dssp ECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEE
T ss_pred EcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEE
Confidence 999 9999999999999999999987765333210 01 245566888888887 88899999999
Q ss_pred eCCCCceeeEeecCCCCCCeeEEEEc-cCCeEEEeeCCCcEEEEeecc
Q psy15995 636 SLASPAKHIIIKNAHPQSQITRLQWL-DNDLLVSVGQDCNTKIWEIAP 682 (683)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~v~vw~~~~ 682 (683)
|+.+++....+...+|...+..++|+ ++.+|++++ |+.|++|++++
T Consensus 336 d~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 336 DANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred ecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 99999998888766567888888999 778888887 99999999874
No 62
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=8.2e-38 Score=331.40 Aligned_cols=294 Identities=22% Similarity=0.347 Sum_probs=241.3
Q ss_pred eeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCC-----ceeeeccccccCeEEEEECCCCCEEEEEcCCCcEE
Q psy15995 223 GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF-----KFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVF 297 (683)
Q Consensus 223 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 297 (683)
..+.+|.+.|++++|+|++..+|++|+.|++|++|++... .....+.+|...|.+++|+|++++|++++.||.|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 4578999999999999987657999999999999998753 34567889999999999999999999999999999
Q ss_pred EEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEE
Q psy15995 298 LYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTV 377 (683)
Q Consensus 298 iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 377 (683)
+||+.+++....+.. |...|.+++|+|++++|++++.|+.|++||........ +
T Consensus 456 vwd~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~-~----------------------- 509 (694)
T 3dm0_A 456 LWDLAAGVSTRRFVG--HTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYT-I----------------------- 509 (694)
T ss_dssp EEETTTTEEEEEEEC--CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE-E-----------------------
T ss_pred EEECCCCcceeEEeC--CCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCccee-e-----------------------
Confidence 999999999888865 99999999999999999999999999999976432211 1
Q ss_pred ecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCC--CEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEeC
Q psy15995 378 SLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDR--GTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATG 455 (683)
Q Consensus 378 ~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~ 455 (683)
.....+|...|.+++|+|++ ..+++++.|+.|++||+.+.+..... .+|
T Consensus 510 -----------------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~-~~h----------- 560 (694)
T 3dm0_A 510 -----------------SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL-AGH----------- 560 (694)
T ss_dssp -----------------CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEE-CCC-----------
T ss_pred -----------------ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEE-cCC-----------
Confidence 01124588899999999987 58999999999999999876554333 122
Q ss_pred CeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCE
Q psy15995 456 ELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGL 535 (683)
Q Consensus 456 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (683)
...+.+++++|++++
T Consensus 561 -----------------------------------------------------------------~~~v~~v~~spdg~~ 575 (694)
T 3dm0_A 561 -----------------------------------------------------------------TGYVSTVAVSPDGSL 575 (694)
T ss_dssp -----------------------------------------------------------------SSCEEEEEECTTSSE
T ss_pred -----------------------------------------------------------------CCCEEEEEEeCCCCE
Confidence 234678899999999
Q ss_pred EEEEcCCCcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEeCCCeEEEEECCCCcccccccee----------
Q psy15995 536 VAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWG---------- 605 (683)
Q Consensus 536 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~---------- 605 (683)
|++++.||.|++||+.+++.... ..+...|.+++|+|++.+|++++ ++.|++||+.+++.+......
T Consensus 576 l~sg~~Dg~i~iwd~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 652 (694)
T 3dm0_A 576 CASGGKDGVVLLWDLAEGKKLYS--LEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADN 652 (694)
T ss_dssp EEEEETTSBCEEEETTTTEEEEC--CBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC--------
T ss_pred EEEEeCCCeEEEEECCCCceEEE--ecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccc
Confidence 99999999999999998876533 34567899999999999888776 556999999988765432210
Q ss_pred -------eecccEEEEEecCCCCeEEEeecCCcEEEEeCCC
Q psy15995 606 -------FHSAKVNCVAWSPDSALVASGSLDTTIIIWSLAS 639 (683)
Q Consensus 606 -------~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~ 639 (683)
.+...+++++|||||++|++|+.||.|++|++..
T Consensus 653 ~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 653 SGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp --------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 0112378999999999999999999999999863
No 63
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-40 Score=327.42 Aligned_cols=349 Identities=9% Similarity=-0.017 Sum_probs=242.0
Q ss_pred CCCeEEEeeCCCC---------CeEEEecCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeC
Q psy15995 44 RGQPIVLGGDPKG---------KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDT 114 (683)
Q Consensus 44 ~~~~~~~~~s~~~---------~~l~~~~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~ 114 (683)
.+.+.+++|+|++ ++||++..... . -..+|+++.+|+++.|++|+|||+
T Consensus 133 ~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~-------~---------------~~~~~~~~~laS~s~D~tI~iWd~ 190 (524)
T 2j04_B 133 GGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYM-------D---------------EPLNEHLEMFDKEKHSSCIQIFKM 190 (524)
T ss_dssp CC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------CEEEEEEEE
T ss_pred CCceeEEEecccCCCCccCcCCeEEEEEEeccc-------C---------------CccchhhhhhccCCCCceEEEEEc
Confidence 4577788999987 78888753210 0 013799999999999999999999
Q ss_pred CCcccccccccccCCCCcccceeee-eecceeeeEeecc------ceEEEeecCCccEEEEecccccee---------ee
Q psy15995 115 VNKEHILKNEFHPIGGPIKDIGTLL-SLTSIRNILVLSI------GFYIASGDISGKVRIWDTVNKEHI---------LK 178 (683)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~------~~~l~~~~~d~~i~iwd~~~~~~~---------~~ 178 (683)
.+++...... ..+. +...|..++|+|+ +.+||+++.||+|++||+.+++.. ..
T Consensus 191 ~~~~~~~~~~-----------~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~ 259 (524)
T 2j04_B 191 NTSTLHCVKV-----------QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPS 259 (524)
T ss_dssp ETTTCCEEEE-----------EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCS
T ss_pred cCCCCCceEE-----------EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCce
Confidence 8765321100 0011 1266899999997 579999999999999999876421 11
Q ss_pred ccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCC-ceeeeecCCcCeEEE--EeecCCCeEEEEeeCCCeEE
Q psy15995 179 NEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGT-SVGEISGQSKPINSC--DFKPSRPFRIITGSEDNTIA 255 (683)
Q Consensus 179 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~--~~~~~~~~~l~~~~~d~~i~ 255 (683)
..+..|...|.+++|+|++ .|++++.++. +.+|+.+++. +...+.+|...|.++ .|+|+++.+|++++.|++|+
T Consensus 260 ~~l~~h~~~v~sv~~s~~~-~lasgs~Dgt--V~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvk 336 (524)
T 2j04_B 260 LTLSLADSLITTFDFLSPT-TVVCGFKNGF--VAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFY 336 (524)
T ss_dssp EEECCTTTCEEEEEESSSS-EEEEEETTSE--EEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEE
T ss_pred EEEEcCCCCEEEEEecCCC-eEEEEeCCCE--EEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEE
Confidence 2455678999999999865 6777776654 7899988764 455689999999999 57887733599999999999
Q ss_pred EEcCCCCceeeecccccc--CeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEE
Q psy15995 256 VFEGPPFKFKMTKQEHSR--FVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLT 333 (683)
Q Consensus 256 iw~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 333 (683)
+||+++++....+.+|.. .|.+++|+|+++.+++++.|++|++||++++.++..+.. |.+.|.+++|+|++++|++
T Consensus 337 lWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g--H~~~V~sva~Sp~g~~l~S 414 (524)
T 2j04_B 337 IFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS--RETTITAIGVSRLHPMVLA 414 (524)
T ss_dssp EECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE--CSSCEEEEECCSSCCBCEE
T ss_pred EEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec--CCCceEEEEeCCCCCeEEE
Confidence 999998887777777754 588999999999999999999999999999988777764 9999999999999999999
Q ss_pred EECCCcEEEEECCCCceeeEEEe----cCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEE
Q psy15995 334 ASGDKTCKLWDIETKSVVSEFIM----GNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALA 409 (683)
Q Consensus 334 ~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~ 409 (683)
|+.||+|++||+..+ ....... ........+.++++++.+. .. ....+|+..........+.+|...|.+++
T Consensus 415 gs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~--~~~~~~~~~~~g~~~~~l~gh~~~V~~Va 490 (524)
T 2j04_B 415 GSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-ID--SSYEVYPLTVNDVSKAKIDAHGINITCTK 490 (524)
T ss_dssp EETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-EC--CCCCCCC-------------CCCSCCCEE
T ss_pred EECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-cc--CCceecccccCCcceeeecCCCceEEEEE
Confidence 999999999998754 2221110 0111233556667776442 11 12223333222445667889999999999
Q ss_pred EeCCCC---EEEEEeCCCcEEEEcCCCC
Q psy15995 410 LSPDRG---TVFTGSHDGFITRWNAKTG 434 (683)
Q Consensus 410 ~~~~~~---~l~~~~~dg~i~~w~~~~~ 434 (683)
|+|+++ .+++|+.||.|+||++...
T Consensus 491 fsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 491 WNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp ECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred CCCCCCccHHHHhhccCceEEEEEcccc
Confidence 999964 9999999999999998754
No 64
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=1.4e-36 Score=335.94 Aligned_cols=545 Identities=13% Similarity=0.073 Sum_probs=372.2
Q ss_pred ccCCCCCCceeecCCCCCCceeeecccceeecCCCcccCCCeEEEeeCCCCCeEEEecC-------CeEEEEeCCCCccc
Q psy15995 6 LPRTQRGQPIVLGGDPKGKNFLYTNGNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNG-------NSVIIRNIENPAIS 78 (683)
Q Consensus 6 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-------~~i~v~~~~~~~~~ 78 (683)
..|+| +.|+.... +..+++....... ..+ ..+.+.+.+++|||||++||++.. ..|.+||+.+++.
T Consensus 20 ~~~S~--~~iaf~~~--~~l~~~~~~gg~~-~~l-t~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~- 92 (1045)
T 1k32_A 20 PDIHG--DRIIFVCC--DDLWEHDLKSGST-RKI-VSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI- 92 (1045)
T ss_dssp EEEET--TEEEEEET--TEEEEEETTTCCE-EEE-ECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE-
T ss_pred cEEeC--CEEEEEEC--CcEEEEECCCCcE-EEe-eeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe-
Confidence 34555 45554333 4555554322221 111 124567889999999999998742 3799999998874
Q ss_pred ccccCcccce-------EEEEECCCCcEEEEecCC------CCEEEEeCCCcccccccccccCCCCcccceeeeeeccee
Q psy15995 79 DIYTEHSCAV-------NVAKYSPSGFYIASGDIS------GKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIR 145 (683)
Q Consensus 79 ~~~~~h~~~v-------~~~~~s~d~~~las~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 145 (683)
..+..|...+ .+++|||||+++++++.+ ..|.+||+.+++... +.. ....
T Consensus 93 ~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~-l~~----------------~~~~ 155 (1045)
T 1k32_A 93 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP-LNL----------------GPAT 155 (1045)
T ss_dssp EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE-CCS----------------CSCS
T ss_pred EEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE-ecC----------------CCcc
Confidence 5688899988 999999999977887754 347888877664321 111 1223
Q ss_pred eeEeeccceEEEeecC------------CccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEE
Q psy15995 146 NILVLSIGFYIASGDI------------SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHV 213 (683)
Q Consensus 146 ~~~~s~~~~~l~~~~~------------d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~ 213 (683)
.++|+| | ++++++. +....+|....+... ..+..|.+.+.++.|+++ ..+++...+. ...+
T Consensus 156 ~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~--~~l~~~~~~v~~~~~s~d-~l~~~~~~dg--~~~l 228 (1045)
T 1k32_A 156 HILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAF--KKIVDMSTHVSSPVIVGH-RIYFITDIDG--FGQI 228 (1045)
T ss_dssp EEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEE--EEEECCSSCCEEEEEETT-EEEEEECTTS--SCEE
T ss_pred eeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCe--EECcCCCCcccceEEeCC-EEEEEEeccC--ceEE
Confidence 566999 8 8887642 344667754433222 223678899999999988 3333433332 2467
Q ss_pred EEccC-CCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccc-----------cccCeEEEEEC
Q psy15995 214 FMSET-GTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE-----------HSRFVQAVRYS 281 (683)
Q Consensus 214 ~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-----------~~~~v~~~~~~ 281 (683)
|..+. +.....+..|. .+...+|+|+++. ++.+ .++.|.+|+....+. ..+.. |...+.+++|+
T Consensus 229 ~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~-la~~-~~~~i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S 304 (1045)
T 1k32_A 229 YSTDLDGKDLRKHTSFT-DYYPRHLNTDGRR-ILFS-KGGSIYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFS 304 (1045)
T ss_dssp EEEETTSCSCEECCCCC-SSCEEEEEESSSC-EEEE-ETTEEEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEE
T ss_pred EEEeCCCCcceEecCCC-CcceeeEcCCCCE-EEEE-eCCEEEEecCCceEe-eeeccCcccccccccccccccceeeec
Confidence 77654 44555566655 4667799999986 6665 589999999854433 34444 34478999999
Q ss_pred -CCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCcccc-CeEEEEEccCCCEEEEEECCCcEE-EEECCCCceeeEEEecC
Q psy15995 282 -PSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKG-GVYAVAWKPDGTQLLTASGDKTCK-LWDIETKSVVSEFIMGN 358 (683)
Q Consensus 282 -~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~ 358 (683)
|+|+.|++++ ++.+.+|+..+++... +. .+.. .+..++|+ |++.++.++.++.+. +|++..++... +. .+
T Consensus 305 ~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~-~~ 377 (1045)
T 1k32_A 305 PLDGDLIAFVS-RGQAFIQDVSGTYVLK-VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FE-EN 377 (1045)
T ss_dssp ECGGGCEEEEE-TTEEEEECTTSSBEEE-CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CC-CC
T ss_pred CCCCCEEEEEE-cCEEEEEcCCCCceEE-cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ec-CC
Confidence 9999998887 7899999998887654 32 2666 89999999 999999999888888 89998776433 22 44
Q ss_pred cceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCC----------cEEE
Q psy15995 359 QVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDG----------FITR 428 (683)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----------~i~~ 428 (683)
......+.++|+++++++++.++.+++||+..+ ........|...+.+++|+|||++|++++.++ .|++
T Consensus 378 ~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg-~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l 456 (1045)
T 1k32_A 378 LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG-KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 456 (1045)
T ss_dssp CCSEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred ccceeeeEECCCCCEEEEECCCCeEEEEECCCC-ceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence 456678889999999999999999999999874 44455567888999999999999999887654 8999
Q ss_pred EcCCCCCcceeccCCCCcceeEEEEe--CCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceE
Q psy15995 429 WNAKTGENDRVQGAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQI 506 (683)
Q Consensus 429 w~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (683)
||+.+++.. .. ..+...+..+.|+ ++.|+..+.++....|+........
T Consensus 457 ~d~~~g~~~-~l-~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~--------------------------- 507 (1045)
T 1k32_A 457 YDMEGRKIF-AA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSF--------------------------- 507 (1045)
T ss_dssp EETTTTEEE-EC-SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEEC---------------------------
T ss_pred EECCCCcEE-Ee-eCCCcccCCceEcCCCCEEEEEecccCCcCcchhcccccc---------------------------
Confidence 999987632 22 4466677777777 8889999988888888865321100
Q ss_pred EEEeCCceeeeecCCCCCcEEEEccCCCEE--EEEc-CCCcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEE--
Q psy15995 507 SIVENGAKVSSLPIDYEPSSISLDHEHGLV--AVGG-ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVA-- 581 (683)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-- 581 (683)
+....+..+.++++.... +... .+-....|++.+..........+.+.+..++++||++++++
T Consensus 508 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~ 575 (1045)
T 1k32_A 508 ------------EVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVP 575 (1045)
T ss_dssp ------------CSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECC
T ss_pred ------------ccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEec
Confidence 000111222222222211 1111 11111235554322111122236678999999999988885
Q ss_pred -----------EeCCCeEEEEECCCCccccccceeeecccEEEEEecCCCCeEEEeecCCcEEEEeCCCCc
Q psy15995 582 -----------SDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPA 641 (683)
Q Consensus 582 -----------~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~~ 641 (683)
......+.+||+.+++.... ...+.+++|||||+.|++++.| .|++||+.+++
T Consensus 576 ~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l------~~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 576 VHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV------KNNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp CCCSHHHHHHCCCCCEEEEEEETTTCCEEEE------EEEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred ccCcccccccccCCCceEEEEECCCCcEEEe------ecCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 12356788999988875321 1568899999999999999877 79999998876
No 65
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3e-38 Score=309.95 Aligned_cols=322 Identities=14% Similarity=0.158 Sum_probs=257.4
Q ss_pred ccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcc--cccccccccCCCCcccceeeeeecceeeeEeeccceEEEe
Q psy15995 81 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE--HILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIAS 158 (683)
Q Consensus 81 ~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 158 (683)
+..|.++|++++|+|++++||+++.|+.|++||+.+++ .+..+..|. ..|.+++|+|++++|++
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~--------------~~v~~~~~~~~~~~l~~ 69 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHN--------------GQVTGVDWAPDSNRIVT 69 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCS--------------SCEEEEEEETTTTEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCC--------------CcccEEEEeCCCCEEEE
Confidence 45699999999999999999999999999999999886 666665554 78999999999999999
Q ss_pred ecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCc----eeeeecCCcCeEE
Q psy15995 159 GDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTS----VGEISGQSKPINS 234 (683)
Q Consensus 159 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~ 234 (683)
++.||.|++||+.+++.........+...|.+++|+|+++++++++.++. +.+|+++.+.. ......|...|.+
T Consensus 70 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--v~i~d~~~~~~~~~~~~~~~~~~~~i~~ 147 (372)
T 1k8k_C 70 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRV--ISICYFEQENDWWVCKHIKKPIRSTVLS 147 (372)
T ss_dssp EETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSS--EEEEEEETTTTEEEEEEECTTCCSCEEE
T ss_pred EcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCE--EEEEEecCCCcceeeeeeecccCCCeeE
Confidence 99999999999998876666666778899999999999999999987654 78888888763 2333678999999
Q ss_pred EEeecCCCeEEEEeeCCCeEEEEcC------------------CCCceeeeccccccCeEEEEECCCCCEEEEEcCCCcE
Q psy15995 235 CDFKPSRPFRIITGSEDNTIAVFEG------------------PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKV 296 (683)
Q Consensus 235 ~~~~~~~~~~l~~~~~d~~i~iw~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 296 (683)
++|+|+++. +++++.|+.|++||+ ..++....+..|...|.+++|+|++++|++++.||.|
T Consensus 148 ~~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 226 (372)
T 1k8k_C 148 LDWHPNSVL-LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV 226 (372)
T ss_dssp EEECTTSSE-EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEE
T ss_pred EEEcCCCCE-EEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEE
Confidence 999999985 999999999999994 4678888888999999999999999999999999999
Q ss_pred EEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCC--CceeeEEEecCcceeceEEEEecCCEE
Q psy15995 297 FLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET--KSVVSEFIMGNQVEDQQVSCLWQGDYL 374 (683)
Q Consensus 297 ~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l 374 (683)
++||+++++.+..+.. |...|.+++|+|++++++++ .|+.+++|++.. ++.......... .-
T Consensus 227 ~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~-------------~~ 290 (372)
T 1k8k_C 227 CLADADKKMAVATLAS--ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVP-------------KQ 290 (372)
T ss_dssp EEEEGGGTTEEEEEEC--SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC---------------
T ss_pred EEEECCCCceeEEEcc--CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCcc-------------cc
Confidence 9999999999988875 88899999999999888777 899999999987 431110000000 00
Q ss_pred EEEecCCcEEEE---ecCCCCcc------eeeeeeccccEEEEEEe-CCC---CEEEEEeCCCcEEEEcCCCCCc
Q psy15995 375 LTVSLSGFISYL---DVNNPSTP------IRVIKGHNKPITALALS-PDR---GTVFTGSHDGFITRWNAKTGEN 436 (683)
Q Consensus 375 ~~~~~~g~i~~~---~~~~~~~~------~~~~~~~~~~v~~~~~~-~~~---~~l~~~~~dg~i~~w~~~~~~~ 436 (683)
........+.+| +... ... .....+|...|++++|. +++ ++|++++.||.|++|++.+++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 291 SSQRGLTARERFQNLDKKA-SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp ------CHHHHHHHCCCCC----------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred chhhhcchhhhhhhccccc-ccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 011112223333 2111 111 22234899999999966 666 9999999999999999876543
No 66
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.7e-37 Score=307.33 Aligned_cols=315 Identities=16% Similarity=0.235 Sum_probs=254.2
Q ss_pred ccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcc------cccccccccCCCCcccceeeeeecceeeeEee
Q psy15995 77 ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE------HILKNEFHPIGGPIKDIGTLLSLTSIRNILVL 150 (683)
Q Consensus 77 ~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 150 (683)
....+.+|.+.|++++|+| ++|++++.||.|++||+.+++ .+..+..|. ..|.+++|+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~--------------~~v~~~~~~ 71 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK--------------SGLHHVDVL 71 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCT--------------TCEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCC--------------CcEEEEEEe
Confidence 3456889999999999999 799999999999999999887 444444443 779999999
Q ss_pred cc----c---eEEEeecCCccEEEEecccccee---eecccccc-----CCCeeEEEEc----CCCCe-EEEEecCCceE
Q psy15995 151 SI----G---FYIASGDISGKVRIWDTVNKEHI---LKNEFHPI-----GGPIKDIAWS----PDNQR-MVVVGEGRERF 210 (683)
Q Consensus 151 ~~----~---~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~-----~~~i~~~~~s----~~~~~-l~~~~~~~~~~ 210 (683)
|+ + ++|++++.||.|++||+.+++.. ....+..+ ...|.+++|+ |++++ +++++.++.
T Consensus 72 ~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~-- 149 (397)
T 1sq9_A 72 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGT-- 149 (397)
T ss_dssp EEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSC--
T ss_pred cccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCc--
Confidence 99 9 99999999999999999987740 02333444 4899999999 99999 888877654
Q ss_pred EEEEEccC------CCcee-----ee-------ecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccc--
Q psy15995 211 GHVFMSET------GTSVG-----EI-------SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE-- 270 (683)
Q Consensus 211 ~~~~~~~~------~~~~~-----~~-------~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-- 270 (683)
+.+|+... ++.+. .+ ..|...|.+++|+|++ .+++++.|+.|++||+++++.+..+..
T Consensus 150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 227 (397)
T 1sq9_A 150 TYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQH 227 (397)
T ss_dssp EEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC
T ss_pred EEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccc
Confidence 78899888 77766 77 4489999999999999 499999999999999999999999988
Q ss_pred -c---ccCeEEEEECCCCCEEEEEcCC---CcEEEEeCCCCeeEEeccCCc-----------cccCeEEEEEccCCCEEE
Q psy15995 271 -H---SRFVQAVRYSPSGSHFASAGFD---GKVFLYDGASADLVSELGNPA-----------HKGGVYAVAWKPDGTQLL 332 (683)
Q Consensus 271 -~---~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~ 332 (683)
| ...|.+++|+|++++|++++.| |.|++||+.+++.+..+..+. |...|.+++|+|++++|+
T Consensus 228 ~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 307 (397)
T 1sq9_A 228 SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC 307 (397)
T ss_dssp ---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred cccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEE
Confidence 8 9999999999999999999999 999999999999888875321 788999999999999999
Q ss_pred EEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeC
Q psy15995 333 TASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSP 412 (683)
Q Consensus 333 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 412 (683)
+++.||.|++||+.+++.+..+......... . . |.. .........|...|.+++|+|
T Consensus 308 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------~--------~-------~~~--~g~~~~~~~~~~~v~~~~~~~ 364 (397)
T 1sq9_A 308 SAGWDGKLRFWDVKTKERITTLNMHCDDIEI------E--------E-------DIL--AVDEHGDSLAEPGVFDVKFLK 364 (397)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCGGGCSS------G--------G-------GCC--CBCTTSCBCSSCCEEEEEEEC
T ss_pred EEeCCCeEEEEEcCCCceeEEEecccCcccc------h--------h-------hhh--ccccccccccCCceeEEEecc
Confidence 9999999999999998877766421000000 0 0 000 000112244689999999999
Q ss_pred CC----------CEEEEEeCCCcEEEEcCCCC
Q psy15995 413 DR----------GTVFTGSHDGFITRWNAKTG 434 (683)
Q Consensus 413 ~~----------~~l~~~~~dg~i~~w~~~~~ 434 (683)
++ ++|++++.||.|++|++.++
T Consensus 365 ~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 365 KGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 98 79999999999999998775
No 67
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=309.34 Aligned_cols=358 Identities=16% Similarity=0.207 Sum_probs=249.1
Q ss_pred EEEEccCCCceeeeecCCcCeEEEEeec-CCCeEEEEeeCCCeEEEEcCCCCceeeecc-------------ccccCeEE
Q psy15995 212 HVFMSETGTSVGEISGQSKPINSCDFKP-SRPFRIITGSEDNTIAVFEGPPFKFKMTKQ-------------EHSRFVQA 277 (683)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~-------------~~~~~v~~ 277 (683)
.+|+++.++....+.+|.+.|++++|+| ++++ |++++.||.|++||+.+++....+. +|...|.+
T Consensus 26 ~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 104 (408)
T 4a11_B 26 RVLGLELNKDRDVERIHGGGINTLDIEPVEGRY-MLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVET 104 (408)
T ss_dssp HHHTEEECTTEEECCCCSSCEEEEEECTTTCCE-EEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEE
T ss_pred eeeccccCcceeeeeccCCcEEEEEEecCCCCE-EEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEE
Confidence 4555666777788889999999999999 8885 9999999999999998876655443 59999999
Q ss_pred EEECC-CCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccC---CCEEEEEECCCcEEEEECCCCceeeE
Q psy15995 278 VRYSP-SGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPD---GTQLLTASGDKTCKLWDIETKSVVSE 353 (683)
Q Consensus 278 ~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~ 353 (683)
++|+| ++++|++++.||.|++||+.+++....+. +...+.++.+.|. +.++++++.++.|++||+++++.+.
T Consensus 105 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~- 180 (408)
T 4a11_B 105 VQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN---FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH- 180 (408)
T ss_dssp EEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE---CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE-
T ss_pred EEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc---CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee-
Confidence 99999 77799999999999999999999888876 6778999999984 4599999999999999998765433
Q ss_pred EEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCC-EEEEEeCCCcEEEEcCC
Q psy15995 354 FIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNAK 432 (683)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~w~~~ 432 (683)
.+..|...|.+++|+|+++ .+++++.||.|++||++
T Consensus 181 -------------------------------------------~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~ 217 (408)
T 4a11_B 181 -------------------------------------------ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217 (408)
T ss_dssp -------------------------------------------EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred -------------------------------------------eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECC
Confidence 3456889999999999998 58899999999999998
Q ss_pred CCCcceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCC
Q psy15995 433 TGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENG 512 (683)
Q Consensus 433 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (683)
+..........+..... . .
T Consensus 218 ~~~~~~~~~~~~~~~~~-----------------------------~--------------------------------~ 236 (408)
T 4a11_B 218 RASGCLITLDQHNGKKS-----------------------------Q--------------------------------A 236 (408)
T ss_dssp CSSCCSEECCTTTTCSC-----------------------------C--------------------------------C
T ss_pred CCCcccccccccccccc-----------------------------e--------------------------------e
Confidence 76532222111110000 0 0
Q ss_pred ceeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCcceeec----CCcCeeEEEECCCCCEEEEEeCCCeE
Q psy15995 513 AKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD----HLGPVTDCSFSPSNEYLVASDAHRKV 588 (683)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d~~i 588 (683)
.......+...+.+++++|++++|++++.||.|++||+.+++........ ....+........+..+++++.++.|
T Consensus 237 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 316 (408)
T 4a11_B 237 VESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTI 316 (408)
T ss_dssp TTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEE
T ss_pred eccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEE
Confidence 00001124457899999999999999999999999999987765332211 11222223333455667777889999
Q ss_pred EEEECCCCccccccceeeecccEEEEEecCCCCeEEEeecCCcEEEEeCCCCceeeEeecCCCCCCeeEEEEccCCeEEE
Q psy15995 589 VLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWLDNDLLVS 668 (683)
Q Consensus 589 ~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s 668 (683)
++||+.+++.+... .+|...|++++|+|++++|++++.||.|++|++.+++....... ......+.......+.+
T Consensus 317 ~v~d~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 391 (408)
T 4a11_B 317 AVYTVYSGEQITML--KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDE---TTTKSQLNPAFEDAWSS 391 (408)
T ss_dssp EEEETTTCCEEEEE--CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----------------------------
T ss_pred EEEECcCCcceeee--ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCc---eEeccccccccceeecc
Confidence 99999999887544 34999999999999999999999999999999999887655433 11222333335556778
Q ss_pred eeCCCcEEEEeeccC
Q psy15995 669 VGQDCNTKIWEIAPF 683 (683)
Q Consensus 669 ~~~d~~v~vw~~~~~ 683 (683)
.+.|+.+++|+.+.|
T Consensus 392 ~~~~~~~~~W~~~~~ 406 (408)
T 4a11_B 392 SDEEGGTSAWSHPQF 406 (408)
T ss_dssp ---------------
T ss_pred cCccCceeecCCccc
Confidence 889999999998765
No 68
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.7e-38 Score=315.34 Aligned_cols=302 Identities=15% Similarity=0.177 Sum_probs=231.1
Q ss_pred ccccccCcccceEEEEECC-CCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeec-cce
Q psy15995 77 ISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLS-IGF 154 (683)
Q Consensus 77 ~~~~~~~h~~~v~~~~~s~-d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~ 154 (683)
......+|...|+||+|+| ++++||+|+.||.|+|||+.+++....+.... +...|.+++|+| ++.
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~g------------H~~~V~~l~f~p~~~~ 178 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIG------------AGGSITGLKFNPLNTN 178 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCS------------SSCCCCEEEECSSCTT
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccC------------CCCCEEEEEEeCCCCC
Confidence 3444567899999999999 67899999999999999998776544333222 127799999998 689
Q ss_pred EEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeecCCcCeEE
Q psy15995 155 YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINS 234 (683)
Q Consensus 155 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 234 (683)
+|++++.||+|++||++++..........+...+.+++|+|+++++++++.++. +.+|+.+ ++.+..+.+|...|.+
T Consensus 179 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~--i~~wd~~-~~~~~~~~~h~~~v~~ 255 (435)
T 4e54_B 179 QFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGN--VILLNMD-GKELWNLRMHKKKVTH 255 (435)
T ss_dssp EEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSB--EEEEESS-SCBCCCSBCCSSCEEE
T ss_pred EEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCc--EeeeccC-cceeEEEecccceEEe
Confidence 999999999999999987654433334444567889999999999999887654 6788875 5677889999999999
Q ss_pred EEeecCCCeEEEEeeCCCeEEEEcCCCCceeee---ccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEecc
Q psy15995 235 CDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT---KQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG 311 (683)
Q Consensus 235 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 311 (683)
++|+|+++.++++++.|+.|++||+++.+.... ..+|...|.+++|+|++++|++++.||.|++||+.+++....+.
T Consensus 256 v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~ 335 (435)
T 4e54_B 256 VALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI 335 (435)
T ss_dssp EEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC
T ss_pred eeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe
Confidence 999999987799999999999999887665443 35799999999999999999999999999999999988776654
Q ss_pred CCcc----ccCeEEEEEccCCCEEEEEEC-C-----------CcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEE
Q psy15995 312 NPAH----KGGVYAVAWKPDGTQLLTASG-D-----------KTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLL 375 (683)
Q Consensus 312 ~~~~----~~~i~~~~~~~~~~~l~~~~~-d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 375 (683)
...+ ...+....|+|++..++++.. + +.|++||..+++.+.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~----------------------- 392 (435)
T 4e54_B 336 PHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMC----------------------- 392 (435)
T ss_dssp CCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEE-----------------------
T ss_pred cccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEE-----------------------
Confidence 3111 112345677887777776643 2 345555555444332
Q ss_pred EEecCCcEEEEecCCCCcceeeeeeccccEEEE-EEeCCCCEEEEEeCCCcEEEEcCCCCCcc
Q psy15995 376 TVSLSGFISYLDVNNPSTPIRVIKGHNKPITAL-ALSPDRGTVFTGSHDGFITRWNAKTGEND 437 (683)
Q Consensus 376 ~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~dg~i~~w~~~~~~~~ 437 (683)
....+|...|.++ +|+|+|++|++|+ |+.|++|++++++..
T Consensus 393 --------------------~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 393 --------------------QLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp --------------------EECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred --------------------EEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 2234577788887 6999999999876 789999999987653
No 69
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=304.28 Aligned_cols=299 Identities=16% Similarity=0.253 Sum_probs=239.8
Q ss_pred eeecCCcCeEEEEeecCCCeEEEEeeC---CCeEEEEcCCCCceeeec-cccccCeEEEEECCC---CCEEEEEcCCCcE
Q psy15995 224 EISGQSKPINSCDFKPSRPFRIITGSE---DNTIAVFEGPPFKFKMTK-QEHSRFVQAVRYSPS---GSHFASAGFDGKV 296 (683)
Q Consensus 224 ~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~---~~~l~~~~~dg~i 296 (683)
.+.+|...|.+++|+|+++.++++++. |+.|++||+.+++..... .+|...|.+++|+|+ +++|++++.||.|
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 92 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL 92 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence 457799999999999999876777776 999999999988765443 378999999999999 6999999999999
Q ss_pred EEEeCCCCe-eEEeccCCccccCeEEEEE------ccCCCEEEEEECCCcEEEEECCCCc-eeeEEEecCcceeceEEEE
Q psy15995 297 FLYDGASAD-LVSELGNPAHKGGVYAVAW------KPDGTQLLTASGDKTCKLWDIETKS-VVSEFIMGNQVEDQQVSCL 368 (683)
Q Consensus 297 ~iw~~~~~~-~~~~~~~~~~~~~i~~~~~------~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~ 368 (683)
++||+.+++ .+..+.. |...|.++.| +|++++|++++.||.|++||+++++ .+..+....
T Consensus 93 ~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~---------- 160 (357)
T 3i2n_A 93 HIWNLEAPEMPVYSVKG--HKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQ---------- 160 (357)
T ss_dssp EEECTTSCSSCSEEECC--CSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCT----------
T ss_pred EEEeCCCCCccEEEEEe--cccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccC----------
Confidence 999999887 7777765 9999999955 6789999999999999999998875 333221100
Q ss_pred ecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEE----EeCCCCEEEEEeCCCcEEEEcCCCCCcceeccCCC
Q psy15995 369 WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALA----LSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGH 444 (683)
Q Consensus 369 ~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~ 444 (683)
..+...+.+++ |+|+++++++++.||.|++||+++++.....
T Consensus 161 ------------------------------~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---- 206 (357)
T 3i2n_A 161 ------------------------------GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET---- 206 (357)
T ss_dssp ------------------------------TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE----
T ss_pred ------------------------------CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec----
Confidence 01133678887 7889999999999999999999876542211
Q ss_pred CcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCC
Q psy15995 445 GNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEP 524 (683)
Q Consensus 445 ~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (683)
.+...+
T Consensus 207 --------------------------------------------------------------------------~~~~~v 212 (357)
T 3i2n_A 207 --------------------------------------------------------------------------NIKNGV 212 (357)
T ss_dssp --------------------------------------------------------------------------ECSSCE
T ss_pred --------------------------------------------------------------------------CCCCce
Confidence 122356
Q ss_pred cEEEEcc---CCCEEEEEcCCCcEEEEEcCCCccCccee----ecCCcCeeEEEECCCCC-EEEEEeCCCeEEEEECCCC
Q psy15995 525 SSISLDH---EHGLVAVGGADSKVHIYELNNKSLSPKAE----LDHLGPVTDCSFSPSNE-YLVASDAHRKVVLYRVPDF 596 (683)
Q Consensus 525 ~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~~~~~~ 596 (683)
.+++++| +++++++++.||.|++||+.+++...... ..|...|++++|+|+++ +|++++.||.|++||+.++
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 213 CSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp EEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred EEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence 7889999 89999999999999999998877654433 26899999999999998 8999999999999999864
Q ss_pred ccc-----------------cccceeeecccEEEEEecCCCCeEE-EeecCCcEEEEeCCCCce
Q psy15995 597 ELA-----------------HNKEWGFHSAKVNCVAWSPDSALVA-SGSLDTTIIIWSLASPAK 642 (683)
Q Consensus 597 ~~~-----------------~~~~~~~h~~~v~~~~~s~d~~~l~-~~~~d~~v~iw~~~~~~~ 642 (683)
... ....+.+|...|++++|+|++++|+ +++.|+.|++||+.+.+.
T Consensus 293 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 293 IQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp SCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred cccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 322 2234455899999999999999998 899999999999987653
No 70
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.8e-37 Score=328.86 Aligned_cols=307 Identities=23% Similarity=0.353 Sum_probs=245.1
Q ss_pred ccccCcccceEEEEECCCC-cEEEEecCCCCEEEEeCCCcccc-----cccccccCCCCcccceeeeeecceeeeEeecc
Q psy15995 79 DIYTEHSCAVNVAKYSPSG-FYIASGDISGKVRIWDTVNKEHI-----LKNEFHPIGGPIKDIGTLLSLTSIRNILVLSI 152 (683)
Q Consensus 79 ~~~~~h~~~v~~~~~s~d~-~~las~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 152 (683)
..+++|.+.|++++|+|++ ++|+||+.|++|++||+.+.... ..+..|. ..|.+++|+|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~--------------~~v~~v~~s~~ 441 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHS--------------HFVEDVVLSSD 441 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCS--------------SCEEEEEECTT
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCC--------------CcEEEEEECCC
Confidence 4578999999999999865 79999999999999999865322 2233332 77999999999
Q ss_pred ceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceee---eecCC
Q psy15995 153 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE---ISGQS 229 (683)
Q Consensus 153 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 229 (683)
+++|++|+.|++|++||+.+++.. ..+..|...|.+++|+|+++++++++.++. +++|+......... ..+|.
T Consensus 442 g~~l~sgs~Dg~v~vwd~~~~~~~--~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~--i~iwd~~~~~~~~~~~~~~~h~ 517 (694)
T 3dm0_A 442 GQFALSGSWDGELRLWDLAAGVST--RRFVGHTKDVLSVAFSLDNRQIVSASRDRT--IKLWNTLGECKYTISEGGEGHR 517 (694)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEE--EEEECCSSCEEEEEECTTSSCEEEEETTSC--EEEECTTSCEEEEECSSTTSCS
T ss_pred CCEEEEEeCCCcEEEEECCCCcce--eEEeCCCCCEEEEEEeCCCCEEEEEeCCCE--EEEEECCCCcceeeccCCCCCC
Confidence 999999999999999999988754 445678899999999999999999988754 67777654332222 24789
Q ss_pred cCeEEEEeecCCC-eEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEE
Q psy15995 230 KPINSCDFKPSRP-FRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVS 308 (683)
Q Consensus 230 ~~v~~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 308 (683)
..|.+++|+|++. ..+++++.|++|++||+++.+....+.+|...|.+++|+|++++|++++.||.|++||+.+++.+.
T Consensus 518 ~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~ 597 (694)
T 3dm0_A 518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY 597 (694)
T ss_dssp SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEE
T ss_pred CcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence 9999999999872 359999999999999999999999999999999999999999999999999999999999999888
Q ss_pred eccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEec
Q psy15995 309 ELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDV 388 (683)
Q Consensus 309 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~ 388 (683)
.+. +...|.+++|+|++.++++++ ++.|++||+++++.+..+............
T Consensus 598 ~~~---~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---------------------- 651 (694)
T 3dm0_A 598 SLE---ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKAD---------------------- 651 (694)
T ss_dssp CCB---CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC-----------------------------
T ss_pred Eec---CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhcccccccccccc----------------------
Confidence 775 556899999999998777765 566999999998887665332211000000
Q ss_pred CCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCC
Q psy15995 389 NNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 432 (683)
Q Consensus 389 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~ 432 (683)
.........+...+++++|+|++++|++|+.||.|++|++.
T Consensus 652 ---~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 652 ---NSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ---ccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 00000112233457899999999999999999999999985
No 71
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=8.8e-38 Score=310.96 Aligned_cols=360 Identities=14% Similarity=0.187 Sum_probs=254.5
Q ss_pred cCCeEEEEeCCCCcccccccCcccceEEEEECC-CCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeee
Q psy15995 63 NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSL 141 (683)
Q Consensus 63 ~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (683)
.+..+++|+++.++....+.+|.+.|++++|+| ++++||+++.||.|++||+.+++....+....... ........+.
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 99 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCS-IGRDHPDVHR 99 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEE-ECTTCTTCCS
T ss_pred ccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccc-ccccccccCC
Confidence 345678899988888889999999999999999 99999999999999999999887665543211000 0000000133
Q ss_pred cceeeeEeec-cceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCC---CeEEEEecCCceEEEEEEcc
Q psy15995 142 TSIRNILVLS-IGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDN---QRMVVVGEGRERFGHVFMSE 217 (683)
Q Consensus 142 ~~i~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~~~~~~~~~~~~~ 217 (683)
..|.+++|+| ++.+|++++.||.|++||+.+++...... +...+.++.|+|.+ .++++++.++. +.+|+.+
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~d~~ 174 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN---FEETVYSHHMSPVSTKHCLVAVGTRGPK--VQLCDLK 174 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE---CSSCEEEEEECSSCSSCCEEEEEESSSS--EEEEESS
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc---CCCceeeeEeecCCCCCcEEEEEcCCCe--EEEEeCC
Confidence 7899999999 78899999999999999999987665544 45789999999854 47888776654 7899999
Q ss_pred CCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCc-eeeec---------------cccccCeEEEEEC
Q psy15995 218 TGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK-FKMTK---------------QEHSRFVQAVRYS 281 (683)
Q Consensus 218 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~-~~~~~---------------~~~~~~v~~~~~~ 281 (683)
+++.+..+.+|...|.+++|+|++++++++++.||.|++||++... ....+ ..|...|.+++|+
T Consensus 175 ~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 254 (408)
T 4a11_B 175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT 254 (408)
T ss_dssp SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence 9999999999999999999999999769999999999999987665 22222 5788999999999
Q ss_pred CCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCc---cccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecC
Q psy15995 282 PSGSHFASAGFDGKVFLYDGASADLVSELGNPA---HKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGN 358 (683)
Q Consensus 282 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 358 (683)
|++++|++++.||.|++||+.+++......... ....+........+..+++++.++.|++||+.+++.+.
T Consensus 255 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~------ 328 (408)
T 4a11_B 255 SDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT------ 328 (408)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEE------
T ss_pred CCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCccee------
Confidence 999999999999999999999887655443211 11122222223345566777778899999988776543
Q ss_pred cceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCcce
Q psy15995 359 QVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDR 438 (683)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~ 438 (683)
.+.+|...|++++|+|++++|++++.||.|++||+.+.+...
T Consensus 329 --------------------------------------~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 329 --------------------------------------MLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp --------------------------------------EECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----
T ss_pred --------------------------------------eeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccC
Confidence 346788999999999999999999999999999999987765
Q ss_pred eccCCCCcceeEEEEe-CCeEEEEEcCCeEEEEeCCC
Q psy15995 439 VQGAGHGNQINGMKAT-GELLYTCGIDDTIKQVDLSS 474 (683)
Q Consensus 439 ~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~~~~~~ 474 (683)
...... ....+... .....+.+.++.+++|+...
T Consensus 371 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 371 DDDETT--TKSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp -------------------------------------
T ss_pred CCCceE--eccccccccceeecccCccCceeecCCcc
Confidence 442211 11222222 45566777899999998653
No 72
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.1e-38 Score=312.38 Aligned_cols=320 Identities=13% Similarity=0.219 Sum_probs=242.2
Q ss_pred eecCCcCeEEEEeecC---CCeEEEEeeCCCeEEEEcCCCCceeeeccc-----cccCeEEEEECCC----CCEEEEEcC
Q psy15995 225 ISGQSKPINSCDFKPS---RPFRIITGSEDNTIAVFEGPPFKFKMTKQE-----HSRFVQAVRYSPS----GSHFASAGF 292 (683)
Q Consensus 225 ~~~~~~~v~~~~~~~~---~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-----~~~~v~~~~~~~~----~~~l~~~~~ 292 (683)
..+|..+|.+++|+|+ +...+++++.++.|++||..+++.+..+.. |...|.+++|+|+ +++|++++.
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 4589999999999984 444577777788999999998877766654 5577999999999 679999999
Q ss_pred CCcEEEEeCCCCeeEEeccCCccccCeEEEEEcc-CCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecC
Q psy15995 293 DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKP-DGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQG 371 (683)
Q Consensus 293 dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (683)
||.|++||+.+++.+..+.. |...|.+++|+| ++++|++++.||.|++||+++++.+..+
T Consensus 94 dg~i~v~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----------------- 154 (366)
T 3k26_A 94 RGIIRIINPITMQCIKHYVG--HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF----------------- 154 (366)
T ss_dssp TCEEEEECTTTCCEEEEEES--CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEE-----------------
T ss_pred CCEEEEEEchhceEeeeecC--CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEe-----------------
Confidence 99999999999999888875 999999999999 9999999999999999999987655433
Q ss_pred CEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEE
Q psy15995 372 DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGM 451 (683)
Q Consensus 372 ~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~ 451 (683)
..+..|...|.+++|+|++++|++++.||.|++||+++++........
T Consensus 155 ------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------- 202 (366)
T 3k26_A 155 ------------------------GGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES-------- 202 (366)
T ss_dssp ------------------------CSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHH--------
T ss_pred ------------------------cccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCcccccccee--------
Confidence 112468899999999999999999999999999999887654433210
Q ss_pred EEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEcc
Q psy15995 452 KATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDH 531 (683)
Q Consensus 452 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (683)
+.++|
T Consensus 203 ---------------------------------------------------------------------------~~~~~ 207 (366)
T 3k26_A 203 ---------------------------------------------------------------------------YDYNP 207 (366)
T ss_dssp ---------------------------------------------------------------------------HTCCG
T ss_pred ---------------------------------------------------------------------------EEecC
Confidence 00111
Q ss_pred CCCEEEEEcCCCcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEeCCCeEEEEECCCCcc------------c
Q psy15995 532 EHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFEL------------A 599 (683)
Q Consensus 532 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~------------~ 599 (683)
++..++........ ........|...|.+++|+ +++|++++.|+.|++||+.+++. .
T Consensus 208 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 276 (366)
T 3k26_A 208 NKTNRPFISQKIHF---------PDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVT 276 (366)
T ss_dssp GGCSSCCCCEEECC---------CSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEE
T ss_pred CCCcccccceeecc---------CccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchh
Confidence 11111100000000 0001112266677777776 56777777777777777765543 1
Q ss_pred cccceeeecccEEEEEecCC--CCeEEEeecCCcEEEEeCCCCceee----EeecCCCCCCeeEEEEc-cCCeEEEeeCC
Q psy15995 600 HNKEWGFHSAKVNCVAWSPD--SALVASGSLDTTIIIWSLASPAKHI----IIKNAHPQSQITRLQWL-DNDLLVSVGQD 672 (683)
Q Consensus 600 ~~~~~~~h~~~v~~~~~s~d--~~~l~~~~~d~~v~iw~~~~~~~~~----~~~~~~~~~~v~~l~~~-~~~~l~s~~~d 672 (683)
....+.+|...|++++|+|+ +++|++++.||.|++||+.+++... .+....|...|++++|+ ++++|++++.|
T Consensus 277 ~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 356 (366)
T 3k26_A 277 ILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDD 356 (366)
T ss_dssp EEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred eeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCC
Confidence 12333448889999999999 9999999999999999999886442 44442237999999999 77899999999
Q ss_pred CcEEEEeec
Q psy15995 673 CNTKIWEIA 681 (683)
Q Consensus 673 ~~v~vw~~~ 681 (683)
|.|++|++.
T Consensus 357 g~i~iwd~~ 365 (366)
T 3k26_A 357 ASIWRWDRL 365 (366)
T ss_dssp SEEEEEEC-
T ss_pred CEEEEEEec
Confidence 999999985
No 73
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6.2e-38 Score=312.70 Aligned_cols=301 Identities=14% Similarity=0.172 Sum_probs=227.8
Q ss_pred eeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCce--eeeccccccCeEEEEECC-CCCEEEEEcCCCcEEE
Q psy15995 222 VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF--KMTKQEHSRFVQAVRYSP-SGSHFASAGFDGKVFL 298 (683)
Q Consensus 222 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i 298 (683)
.....+|...|++++|+|.++.+|++|+.||.|++||+.+++. ...+.+|...|++++|+| ++++|++++.||+|++
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 4456678899999999997665699999999999999877654 445568999999999998 6889999999999999
Q ss_pred EeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEe
Q psy15995 299 YDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVS 378 (683)
Q Consensus 299 w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 378 (683)
||++++..........+...+.+++|+|++++|++++.||.|++||++...
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~----------------------------- 242 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE----------------------------- 242 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-----------------------------
T ss_pred eeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-----------------------------
Confidence 999877655544433355678899999999999999999999999986432
Q ss_pred cCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCC-EEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEeCCe
Q psy15995 379 LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATGEL 457 (683)
Q Consensus 379 ~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 457 (683)
+..+.+|...|.+++|+|++. ++++++.|+.|++||+++.+.......
T Consensus 243 ----------------~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~--------------- 291 (435)
T 4e54_B 243 ----------------LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY--------------- 291 (435)
T ss_dssp ----------------CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB---------------
T ss_pred ----------------eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEE---------------
Confidence 133567999999999999876 677999999999999987654332210
Q ss_pred EEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEE
Q psy15995 458 LYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVA 537 (683)
Q Consensus 458 l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 537 (683)
...+...+.+++|+|++++|+
T Consensus 292 -----------------------------------------------------------~~~h~~~v~~~~~spdg~~l~ 312 (435)
T 4e54_B 292 -----------------------------------------------------------SLPHRHPVNAACFSPDGARLL 312 (435)
T ss_dssp -----------------------------------------------------------CCBCSSCEEECCBCTTSSEEE
T ss_pred -----------------------------------------------------------eeeccccccceeECCCCCeeE
Confidence 011233567778889999999
Q ss_pred EEcCCCcEEEEEcCCCccCcceeec-----CCcCeeEEEECCCCCEEEEEe------------CCCeEEEEECCCCcccc
Q psy15995 538 VGGADSKVHIYELNNKSLSPKAELD-----HLGPVTDCSFSPSNEYLVASD------------AHRKVVLYRVPDFELAH 600 (683)
Q Consensus 538 ~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~------------~d~~i~i~~~~~~~~~~ 600 (683)
+++.||.|++||+.++......... ....+....|+|++.+++++. .++.|++||..+++.+.
T Consensus 313 s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~ 392 (435)
T 4e54_B 313 TTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMC 392 (435)
T ss_dssp EEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEE
T ss_pred EEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEE
Confidence 9999999999998876544222110 111233455666666666553 34579999999998876
Q ss_pred ccceeeecccEEEE-EecCCCCeEEEeecCCcEEEEeCCCCcee
Q psy15995 601 NKEWGFHSAKVNCV-AWSPDSALVASGSLDTTIIIWSLASPAKH 643 (683)
Q Consensus 601 ~~~~~~h~~~v~~~-~~s~d~~~l~~~~~d~~v~iw~~~~~~~~ 643 (683)
..... |...|.++ +|+|+|++||+|+ |+.|+||++++++.+
T Consensus 393 ~l~~~-~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 393 QLYDP-ESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp EECCS-SCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEeCC-CCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 54333 88889887 6999999999987 789999999987653
No 74
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.5e-37 Score=306.13 Aligned_cols=294 Identities=13% Similarity=0.145 Sum_probs=248.9
Q ss_pred cccCCCeEEEeeCCCCCeEEEe-cCCeEEEEeCCCCc------ccccccCcccceEEEEECCC----C---cEEEEecCC
Q psy15995 41 RTQRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPA------ISDIYTEHSCAVNVAKYSPS----G---FYIASGDIS 106 (683)
Q Consensus 41 ~~~~~~~~~~~~s~~~~~l~~~-~~~~i~v~~~~~~~------~~~~~~~h~~~v~~~~~s~d----~---~~las~~~d 106 (683)
..+.+.+.+++|+| ++|+++ .++.|++||+++++ ....+.+|...|++++|+|+ + ++|++++.|
T Consensus 13 ~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d 90 (397)
T 1sq9_A 13 KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS 90 (397)
T ss_dssp SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred hhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCC
Confidence 35677999999999 666666 68999999999988 67788899999999999999 9 999999999
Q ss_pred CCEEEEeCCCccc-----ccccccccCCCCcccceeeeeecceeeeEee----ccceE-EEeecCCccEEEEeccc----
Q psy15995 107 GKVRIWDTVNKEH-----ILKNEFHPIGGPIKDIGTLLSLTSIRNILVL----SIGFY-IASGDISGKVRIWDTVN---- 172 (683)
Q Consensus 107 g~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s----~~~~~-l~~~~~d~~i~iwd~~~---- 172 (683)
|.|++||+.+++. +..+..+... .....+.+++|+ |++.+ |++++.||.|++||+.+
T Consensus 91 g~i~iw~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 161 (397)
T 1sq9_A 91 GDLLFYRITREDETKKVIFEKLDLLDSD---------MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE 161 (397)
T ss_dssp SCEEEEEEEECTTTCCEEEEEECCSCTT---------GGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred CCEEEEEccCCcccccccceeecccccc---------cCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccc
Confidence 9999999998876 4444443100 001679999999 99999 99999999999999998
Q ss_pred --cceee-----eccc-----cccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeec---C---CcCeEE
Q psy15995 173 --KEHIL-----KNEF-----HPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISG---Q---SKPINS 234 (683)
Q Consensus 173 --~~~~~-----~~~~-----~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~v~~ 234 (683)
++.+. .... ..+...|.+++|+|++ .+++++.++ .+.+|+..+++.+..+.. | ...|.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~ 238 (397)
T 1sq9_A 162 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNG--TVQISELSTLRPLYNFESQHSMINNSNSIRS 238 (397)
T ss_dssp HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTS--EEEEEETTTTEEEEEEECCC---CCCCCEEE
T ss_pred cccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCC--cEEEEECCCCceeEEEeccccccccCCccce
Confidence 65543 3322 4467899999999999 777776654 378999999999999999 9 999999
Q ss_pred EEeecCCCeEEEEeeCC---CeEEEEcCCCCceeeeccc-------------cccCeEEEEECCCCCEEEEEcCCCcEEE
Q psy15995 235 CDFKPSRPFRIITGSED---NTIAVFEGPPFKFKMTKQE-------------HSRFVQAVRYSPSGSHFASAGFDGKVFL 298 (683)
Q Consensus 235 ~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i 298 (683)
++|+|++.+ |++++.| +.|++||+.+++.+..+.. |...|.+++|+|++++|++++.||.|++
T Consensus 239 i~~~~~~~~-l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 317 (397)
T 1sq9_A 239 VKFSPQGSL-LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF 317 (397)
T ss_dssp EEECSSTTE-EEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred EEECCCCCE-EEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 999999985 9999999 9999999999999999988 9999999999999999999999999999
Q ss_pred EeCCCCeeEEeccCC----cc---------------ccCeEEEEEccCC----------CEEEEEECCCcEEEEECCCCc
Q psy15995 299 YDGASADLVSELGNP----AH---------------KGGVYAVAWKPDG----------TQLLTASGDKTCKLWDIETKS 349 (683)
Q Consensus 299 w~~~~~~~~~~~~~~----~~---------------~~~i~~~~~~~~~----------~~l~~~~~dg~i~iwd~~~~~ 349 (683)
||+.+++.+..+... .| ...|.+++|+|++ ++|++++.||.|++|++.+++
T Consensus 318 wd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 318 WDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 999999998888711 26 8999999999998 799999999999999998763
No 75
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.8e-37 Score=304.29 Aligned_cols=290 Identities=16% Similarity=0.127 Sum_probs=247.4
Q ss_pred cCCCeEEEeeCCCCCeEEEe-cCCeEEEEeCCCCc--ccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCccc
Q psy15995 43 QRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPA--ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 119 (683)
Q Consensus 43 ~~~~~~~~~~s~~~~~l~~~-~~~~i~v~~~~~~~--~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~ 119 (683)
+.+.+.+++|+|++++|+++ .++.|++||+++++ .+..+.+|...|++++|+|++++|++++.||.|++||+.+++.
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 86 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 86 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee
Confidence 55789999999999999998 78999999999987 7888999999999999999999999999999999999988764
Q ss_pred ccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEecccccee--eeccccccCCCeeEEEEcCCC
Q psy15995 120 ILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHI--LKNEFHPIGGPIKDIAWSPDN 197 (683)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~i~~~~~s~~~ 197 (683)
........ +...+.+++|+|++++|++++.|+.|++||+..++.. .......|...|.+++|+|++
T Consensus 87 ~~~~~~~~------------~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 154 (372)
T 1k8k_C 87 KPTLVILR------------INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS 154 (372)
T ss_dssp EEEEECCC------------CSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred eeeEEeec------------CCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC
Confidence 44332221 1267899999999999999999999999999887631 223335567899999999999
Q ss_pred CeEEEEecCCceEEEEEEc------------------cCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcC
Q psy15995 198 QRMVVVGEGRERFGHVFMS------------------ETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEG 259 (683)
Q Consensus 198 ~~l~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~ 259 (683)
+++++++.++. +.+|+. ..++.+..+..|...|.+++|+|++++ +++++.|+.|++||+
T Consensus 155 ~~l~~~~~dg~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 155 VLLAAGSCDFK--CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR-VAWVSHDSTVCLADA 231 (372)
T ss_dssp SEEEEEETTSC--EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSE-EEEEETTTEEEEEEG
T ss_pred CEEEEEcCCCC--EEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCE-EEEEeCCCEEEEEEC
Confidence 99999887654 688884 367788888999999999999999985 999999999999999
Q ss_pred CCCceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCC--CeeE------------------------------
Q psy15995 260 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGAS--ADLV------------------------------ 307 (683)
Q Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~~~~------------------------------ 307 (683)
.+++.+..+..|...|.+++|+|++++++++ .|+.|++|++.+ ++..
T Consensus 232 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (372)
T 1k8k_C 232 DKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKAS 310 (372)
T ss_dssp GGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-
T ss_pred CCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccc
Confidence 9999999999999999999999999988887 799999999987 4310
Q ss_pred --------EeccCCccccCeEEEEEc-cCC---CEEEEEECCCcEEEEECCCCc
Q psy15995 308 --------SELGNPAHKGGVYAVAWK-PDG---TQLLTASGDKTCKLWDIETKS 349 (683)
Q Consensus 308 --------~~~~~~~~~~~i~~~~~~-~~~---~~l~~~~~dg~i~iwd~~~~~ 349 (683)
..+. .+|...|.+++|. +++ ++|++++.||.|++|++.+++
T Consensus 311 ~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 311 SEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp --------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 1111 2599999999976 566 899999999999999987654
No 76
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-37 Score=312.04 Aligned_cols=384 Identities=16% Similarity=0.206 Sum_probs=277.0
Q ss_pred EECCCCcEEEEecCCCCEEEEeCCCccccccc-ccccCCCCcccceeeeeecceeeeEeec-cceEEEeecCCccEEEEe
Q psy15995 92 KYSPSGFYIASGDISGKVRIWDTVNKEHILKN-EFHPIGGPIKDIGTLLSLTSIRNILVLS-IGFYIASGDISGKVRIWD 169 (683)
Q Consensus 92 ~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iwd 169 (683)
.|+|+++.+++++ .|+ .+++.+..+ ..|. ..|.+++|+| ++++||+|+.||+|++||
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~--------------~~V~~~~~s~~~~~~l~s~s~dg~v~vwd 92 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEP--------------NSITSSAVSPGETPYLITGSDQGVIKIWN 92 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTT--------------SCEEEEEEECSSSCEEEEEETTSEEEEEE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCC--------------CceEEEEECCCCCCEEEEecCCceEEEeE
Confidence 4788888888765 388 455666666 5554 7899999999 999999999999999999
Q ss_pred ccc---cceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEcc---CCCceeeeecCCcCeEEEEeecCCCe
Q psy15995 170 TVN---KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE---TGTSVGEISGQSKPINSCDFKPSRPF 243 (683)
Q Consensus 170 ~~~---~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~ 243 (683)
+.+ +..........|.+.|.+++|+|+++++++++.++. +.+|+.+ .++....+..| .+..+.|+|++
T Consensus 93 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~--i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~-- 166 (437)
T 3gre_A 93 LKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQ--IIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG-- 166 (437)
T ss_dssp HHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSE--EEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS--
T ss_pred CcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCE--EEEEEeccccCCceeeccccc--eeEEEEccCcc--
Confidence 987 432211222247899999999999999999887754 6778774 55555555554 55566665542
Q ss_pred EEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEE--ECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEE
Q psy15995 244 RIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVR--YSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYA 321 (683)
Q Consensus 244 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~ 321 (683)
+...+.++. +++++++|++++.||.|++||+++++.+..+..+.|...|.+
T Consensus 167 ---------------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~ 219 (437)
T 3gre_A 167 ---------------------------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSS 219 (437)
T ss_dssp ---------------------------SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEE
T ss_pred ---------------------------cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEE
Confidence 334455555 678999999999999999999999999998876558899999
Q ss_pred EEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeec
Q psy15995 322 VAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGH 401 (683)
Q Consensus 322 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~ 401 (683)
++|+|++++|++++.||.|++||+++++.+..+. ..|
T Consensus 220 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------------------------------~~~ 256 (437)
T 3gre_A 220 ICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWS-------------------------------------------FGD 256 (437)
T ss_dssp EEECTTSCEEEEEETTSCEEEEETTTTEEEEEEB-------------------------------------------CTT
T ss_pred EEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEe-------------------------------------------cCC
Confidence 9999999999999999999999999876654431 146
Q ss_pred cccEEEEEEeC----CCCEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEe--CCeEEEEEcCCeEEEEeCCCC
Q psy15995 402 NKPITALALSP----DRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLSSN 475 (683)
Q Consensus 402 ~~~v~~~~~~~----~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~~~~~~~ 475 (683)
..+|.+++++| ++.+|++++.||.|++||+.+++....+ ..|...+..+.+. +..+ .+
T Consensus 257 ~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l----~~----------- 320 (437)
T 3gre_A 257 HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAF-INSDEQPSMEHFLPIEKGL----EE----------- 320 (437)
T ss_dssp CEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEE-ESSSSCCCGGGGSCBCSSG----GG-----------
T ss_pred CCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEE-EcCCCCCccceeccccccc----cc-----------
Confidence 67899996654 6789999999999999999988776655 3344333322222 1100 00
Q ss_pred cccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCcc
Q psy15995 476 AYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL 555 (683)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 555 (683)
.......+...+.+++++ ++++|++++.|+.|++||+.+++.
T Consensus 321 -------------------------------------~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~ 362 (437)
T 3gre_A 321 -------------------------------------LNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSS 362 (437)
T ss_dssp -------------------------------------CCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGG
T ss_pred -------------------------------------ceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCccc
Confidence 000011244568999999 789999999999999999999887
Q ss_pred Ccceeec--CCcCeeEEEECCCCCEEEEEeCCCeEEEEECCCCccccccceeeecccEEEEEecCC--CCeEEEeecCCc
Q psy15995 556 SPKAELD--HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPD--SALVASGSLDTT 631 (683)
Q Consensus 556 ~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~~~~~d~~ 631 (683)
....... ....+....++++..+++.. |+........ ....|...|++++|+++ +.+|++|+.||.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~--~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~ 432 (437)
T 3gre_A 363 SKAVISPSRFSDVFIPTQVTANLTMLLRK--------MKRTSTHSVD--DSLYHHDIINSISTCEVDETPLLVACDNSGL 432 (437)
T ss_dssp CEEEECC--CCCEEEEEEEETTEEEEEEE--------CC---------------CCCEEEEEEEESSSSEEEEEEETTSC
T ss_pred ceEEecccccCceEEEEEeecceEEEEEe--------cccccccccC--cccccccceeeEeeeccCCceEEEEEcCCce
Confidence 6444321 33445566666666655544 2222222222 22239999999999998 789999999999
Q ss_pred EEEEe
Q psy15995 632 IIIWS 636 (683)
Q Consensus 632 v~iw~ 636 (683)
|++|+
T Consensus 433 I~iw~ 437 (437)
T 3gre_A 433 IGIFQ 437 (437)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99995
No 77
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-36 Score=290.93 Aligned_cols=293 Identities=16% Similarity=0.195 Sum_probs=249.8
Q ss_pred CcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccce
Q psy15995 75 PAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGF 154 (683)
Q Consensus 75 ~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 154 (683)
.+..+.+.+|.+.|++++| |++++|++++.||.|++||+.+++....+..+. ..+.+++|+|+++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~--------------~~v~~~~~~~~~~ 72 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQ--------------GFLNSVCYDSEKE 72 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECS--------------SCEEEEEEETTTT
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCC--------------ccEEEEEECCCCC
Confidence 3677889999999999999 999999999999999999999887776666554 7899999999999
Q ss_pred EEEeecCCccEEEEeccccce-eeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeecCCcCeE
Q psy15995 155 YIASGDISGKVRIWDTVNKEH-ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPIN 233 (683)
Q Consensus 155 ~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 233 (683)
+|++++.||.|++|++..... .....+..|...|.+++| +++++++++.++. +.+|+ .++....+..|...+.
T Consensus 73 ~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~--i~~~d--~~~~~~~~~~~~~~v~ 146 (313)
T 3odt_A 73 LLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKT--AKVWK--EGSLVYNLQAHNASVW 146 (313)
T ss_dssp EEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSE--EEEEE--TTEEEEEEECCSSCEE
T ss_pred EEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCC--EEEEc--CCcEEEecccCCCcee
Confidence 999999999999999876531 123445678899999999 5778888887753 55555 8888889999999999
Q ss_pred EEEeec-CCCeEEEEeeCCCeEEEEcCCCCceeeeccc-cccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEecc
Q psy15995 234 SCDFKP-SRPFRIITGSEDNTIAVFEGPPFKFKMTKQE-HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG 311 (683)
Q Consensus 234 ~~~~~~-~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 311 (683)
++.|.| +++ .+++++.|+.|++|| ..+....+.. |...+.+++|+|++. +++++.||.|++||+++++.+..+.
T Consensus 147 ~~~~~~~~~~-~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~ 222 (313)
T 3odt_A 147 DAKVVSFSEN-KFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE 222 (313)
T ss_dssp EEEEEETTTT-EEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEccCCCC-EEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh
Confidence 999999 666 599999999999999 4555666666 899999999999998 9999999999999999999998887
Q ss_pred CCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCC
Q psy15995 312 NPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNP 391 (683)
Q Consensus 312 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~ 391 (683)
. |...|.+++|+|++ .+++++.||.|++||+++++....
T Consensus 223 ~--~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~-------------------------------------- 261 (313)
T 3odt_A 223 G--HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQV-------------------------------------- 261 (313)
T ss_dssp C--CSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEE--------------------------------------
T ss_pred c--CCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEE--------------------------------------
Confidence 5 99999999999999 599999999999999998765443
Q ss_pred CcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCcceec
Q psy15995 392 STPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQ 440 (683)
Q Consensus 392 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 440 (683)
+..|...|.+++|+|+++ +++++.||.|++||+.+++.....
T Consensus 262 ------~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 262 ------ITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp ------EECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred ------EeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence 355778899999999998 667899999999999887655443
No 78
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-38 Score=303.81 Aligned_cols=320 Identities=12% Similarity=0.125 Sum_probs=251.9
Q ss_pred cCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCc
Q psy15995 184 IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK 263 (683)
Q Consensus 184 ~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~ 263 (683)
....|.+++|+|||+++|+++.+. .+.+ ++....+.+|...|.+++|+|+| .++.+.+|+.+..
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~----TV~d---~~~~~~l~gh~~~v~~V~FsPdg--------~~~~~~~~~~~~~- 77 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDI----SIGQ---PKYAKDINCNSKNLFHVKEFPLE--------FENKLDFELAQQN- 77 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSE----EEEE---ECCCSCCSSBGGGTEEEEEECCC--------CCCTTTTSCCCSS-
T ss_pred hhccEEEEEECCCCCEEEEEcCCc----eeec---ccccceecCCCccEEEEEECCCC--------CcceEEEEeCCCc-
Confidence 448899999999999999998884 4444 34444557999999999999998 4566555554322
Q ss_pred eeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccc-----cCeEEEEEccCCCEEEEEECCC
Q psy15995 264 FKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHK-----GGVYAVAWKPDGTQLLTASGDK 338 (683)
Q Consensus 264 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~dg 338 (683)
....+ .|...|.+++|+|+|++||+++.||.|++||.+. .+..+. |. ..+.+++|+|||++|++++.||
T Consensus 78 ~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~---~~~~~~~~sv~svafSPDG~~LAsgs~DG 151 (588)
T 2j04_A 78 GLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD---SKGNLSSRTYHCFEWNPIESSIVVGNEDG 151 (588)
T ss_dssp CSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC---CSSCSTTTCEEEEEECSSSSCEEEEETTS
T ss_pred eEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc---CCCccccccEEEEEEcCCCCEEEEEcCCC
Confidence 22222 4588999999999999999999999999999544 444443 33 3699999999999999999999
Q ss_pred cEEEEECCCCce-------eeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEe
Q psy15995 339 TCKLWDIETKSV-------VSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALS 411 (683)
Q Consensus 339 ~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 411 (683)
+|++||+.++.. +.++. ....+|...|.+++|+
T Consensus 152 tVkIWd~~~~~l~~~~~i~l~ti~----------------------------------------~~~~gh~~~V~sVawS 191 (588)
T 2j04_A 152 ELQFFSIRKNSENTPEFYFESSIR----------------------------------------LSDAGSKDWVTHIVWY 191 (588)
T ss_dssp EEEEEECCCCTTTCCCCEEEEEEE----------------------------------------CSCTTCCCCEEEEEEE
T ss_pred EEEEEECCCCccccccceeeeeee----------------------------------------cccccccccEEEEEEc
Confidence 999999998642 11111 0124578899999999
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCcc---eeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCC
Q psy15995 412 PDRGTVFTGSHDGFITRWNAKTGEND---RVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQP 488 (683)
Q Consensus 412 ~~~~~l~~~~~dg~i~~w~~~~~~~~---~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~ 488 (683)
|+| +++++.|+.|++||+..+... .....+|...|.+++|.++.+++++ ++.|++|++.+...
T Consensus 192 Pdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~----------- 257 (588)
T 2j04_A 192 EDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYSI----------- 257 (588)
T ss_dssp TTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTEE-----------
T ss_pred CCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCeE-----------
Confidence 999 888899999999999887743 2333468889999999988888887 79999999987532
Q ss_pred ceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEE--ccCCCEEEEEcCCCcEEEEEcCCCccCcceeecCCcC
Q psy15995 489 RGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISL--DHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGP 566 (683)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 566 (683)
......+...+..+++ +|++..++++++||+ ++|..+
T Consensus 258 -------------------------~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d--------------- 296 (588)
T 2j04_A 258 -------------------------SSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED--------------- 296 (588)
T ss_dssp -------------------------EEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS---------------
T ss_pred -------------------------EEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec---------------
Confidence 1222246678899999 999999999999999 999876
Q ss_pred eeEEEECCCCCEEEEEeCCCeEEEEECCCCccccccceeeecccEEEEEecCCCCeEEEeec
Q psy15995 567 VTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSL 628 (683)
Q Consensus 567 v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~ 628 (683)
.++++||+..+++. |+++++|+...+... .+. +...|.+++|||||+.+|+++.
T Consensus 297 --~~~~spd~~l~a~~--d~~v~lW~~~g~~l~---~~~-~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 297 --ELHVTADNIIAPYL--EKKFKKWSTIWNEFN---NYE-TTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp --SEEEECCCSSHHHH--HHHHHHTTTTTTSSS---SSC-CEEEEEEEEECTTSSEEEEEEE
T ss_pred --cEEECCCceEEEEc--CCEEEEEECCCCcee---eec-cceEEEEEEECCCCCEEEEEEe
Confidence 15699999988875 899999998666532 223 4677999999999999998863
No 79
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-36 Score=299.86 Aligned_cols=292 Identities=17% Similarity=0.291 Sum_probs=239.1
Q ss_pred ecCCcC--eEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccc-cccCeEEEEECCCCCEEEEEcCCCcEEEEeCC
Q psy15995 226 SGQSKP--INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE-HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGA 302 (683)
Q Consensus 226 ~~~~~~--v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 302 (683)
.+|... +.++.|+++ . +++++.|+.|++||..+++....+.. |...|.+++|+|++++|++++.||.|++||+.
T Consensus 88 ~~~~~~~~~~~~~~s~~--~-l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSNL--N-VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp TTCCCCTTCBCEEECTT--S-EEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCcCCceEEEEeecCC--C-EEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 355544 455666653 3 88899999999999999988777765 78999999999999999999999999999999
Q ss_pred CCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCc
Q psy15995 303 SADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGF 382 (683)
Q Consensus 303 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 382 (683)
+++.+..+.. |...|.+++|+ ++.+++++.||.|++||++....
T Consensus 165 ~~~~~~~~~~--~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~-------------------------------- 208 (401)
T 4aez_A 165 SQTKLRTMAG--HQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANH-------------------------------- 208 (401)
T ss_dssp TCCEEEEECC--CSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC--------------------------------
T ss_pred CCeEEEEecC--CCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcc--------------------------------
Confidence 9999988875 99999999994 67999999999999999985432
Q ss_pred EEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEEEE
Q psy15995 383 ISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCG 462 (683)
Q Consensus 383 i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 462 (683)
....+.+|...|.+++|+|++++|++++.|+.|++||+.+++...... .
T Consensus 209 -----------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~------------------- 257 (401)
T 4aez_A 209 -----------QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT-N------------------- 257 (401)
T ss_dssp -----------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC-C-------------------
T ss_pred -----------eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec-C-------------------
Confidence 123456789999999999999999999999999999998765443321 1
Q ss_pred cCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCC-EEEEEc-
Q psy15995 463 IDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHG-LVAVGG- 540 (683)
Q Consensus 463 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~- 540 (683)
+...+.+++++|++. ++++++
T Consensus 258 ---------------------------------------------------------~~~~v~~~~~~p~~~~ll~~~~g 280 (401)
T 4aez_A 258 ---------------------------------------------------------HNAAVKAVAWCPWQSNLLATGGG 280 (401)
T ss_dssp ---------------------------------------------------------CSSCCCEEEECTTSTTEEEEECC
T ss_pred ---------------------------------------------------------CcceEEEEEECCCCCCEEEEecC
Confidence 233578889999764 555554
Q ss_pred -CCCcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEE--eCCCeEEEEECCCCccccccceeeecccEEEEEec
Q psy15995 541 -ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS--DAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWS 617 (683)
Q Consensus 541 -~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s 617 (683)
.|+.|++||+.+++..... .+...|.+++|+|++++++++ +.||.|++|++.+++........+|...|.+++|+
T Consensus 281 s~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s 358 (401)
T 4aez_A 281 TMDKQIHFWNAATGARVNTV--DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALS 358 (401)
T ss_dssp TTTCEEEEEETTTCCEEEEE--ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEEC
T ss_pred CCCCEEEEEECCCCCEEEEE--eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEEC
Confidence 7999999999988766433 477889999999999999994 48999999999998777666666799999999999
Q ss_pred CCCCeEEEeecCCcEEEEeCCCCceeeEe
Q psy15995 618 PDSALVASGSLDTTIIIWSLASPAKHIII 646 (683)
Q Consensus 618 ~d~~~l~~~~~d~~v~iw~~~~~~~~~~~ 646 (683)
|++++|++++.||.|++|++.+++.....
T Consensus 359 ~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 359 PDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp TTSSEEEEECTTSEEEEEECCC-------
T ss_pred CCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 99999999999999999999998876554
No 80
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-36 Score=299.21 Aligned_cols=287 Identities=18% Similarity=0.234 Sum_probs=243.6
Q ss_pred eEEEeeCCCCCeEEEecCCeEEEEeCCCCcccccccC-cccceEEEEECCCCcEEEEecCCCCEEEEeCCCccccccccc
Q psy15995 47 PIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTE-HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 125 (683)
Q Consensus 47 ~~~~~~s~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~ 125 (683)
+.++++++ +.+++.+.++.|++||+++++....+.. |...|++++|+|++++|++|+.||.|++||+.+++.+..+..
T Consensus 96 ~~~~~~s~-~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 174 (401)
T 4aez_A 96 LNLLDWSN-LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAG 174 (401)
T ss_dssp CBCEEECT-TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred EEEEeecC-CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecC
Confidence 34577776 4567777899999999999988777765 899999999999999999999999999999999988877766
Q ss_pred ccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEec
Q psy15995 126 HPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGE 205 (683)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 205 (683)
|. ..+.+++| ++.+|++++.||.|++||+..... ....+..|.+.|.+++|+|+++++++++.
T Consensus 175 ~~--------------~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 237 (401)
T 4aez_A 175 HQ--------------ARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANH-QIGTLQGHSSEVCGLAWRSDGLQLASGGN 237 (401)
T ss_dssp CS--------------SCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC-EEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred CC--------------CceEEEEE--CCCEEEEEcCCCCEEEEecccCcc-eeeEEcCCCCCeeEEEEcCCCCEEEEEeC
Confidence 55 67888888 567999999999999999985432 23445668899999999999999999987
Q ss_pred CCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEee--CCCeEEEEcCCCCceeeeccccccCeEEEEECCC
Q psy15995 206 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS--EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPS 283 (683)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~ 283 (683)
++. +.+|+..+++....+..|...|.+++|+|++..++++++ .|+.|++||+.+++....+. +...|.+++|+|+
T Consensus 238 d~~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~ 314 (401)
T 4aez_A 238 DNV--VQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPH 314 (401)
T ss_dssp TSC--EEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSS
T ss_pred CCe--EEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCC
Confidence 654 789999999999999999999999999998887677765 79999999999999888775 6678999999999
Q ss_pred CCEEEE--EcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEE
Q psy15995 284 GSHFAS--AGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEF 354 (683)
Q Consensus 284 ~~~l~~--~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 354 (683)
++.+++ |+.||.|++|++.+++.........|...|.+++|+|++++|++++.||.|++|++.+++.+...
T Consensus 315 ~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 315 SKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp SSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred CCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 999998 44899999999999776666544459999999999999999999999999999999998876554
No 81
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-36 Score=287.57 Aligned_cols=289 Identities=17% Similarity=0.207 Sum_probs=239.6
Q ss_pred CCceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcE
Q psy15995 261 PFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTC 340 (683)
Q Consensus 261 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 340 (683)
..+....+.+|...|.+++| |++++|++++.||.|++||+.+++....+.. |...|.+++|+|+++++++++.||.+
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i 83 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYT--GQGFLNSVCYDSEKELLLFGGKDTMI 83 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEE--CSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeec--CCccEEEEEECCCCCEEEEecCCCeE
Confidence 34677888999999999999 9999999999999999999999988888765 89999999999999999999999999
Q ss_pred EEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEE
Q psy15995 341 KLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 420 (683)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 420 (683)
++|++..... ......+.+|...|.+++| ++++++++
T Consensus 84 ~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~i~~~~~--~~~~l~~~ 120 (313)
T 3odt_A 84 NGVPLFATSG-----------------------------------------EDPLYTLIGHQGNVCSLSF--QDGVVISG 120 (313)
T ss_dssp EEEETTCCTT-----------------------------------------SCC-CEECCCSSCEEEEEE--ETTEEEEE
T ss_pred EEEEeeecCC-----------------------------------------CCcccchhhcccCEEEEEe--cCCEEEEE
Confidence 9999976432 2223456778999999999 56799999
Q ss_pred eCCCcEEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEE
Q psy15995 421 SHDGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVT 500 (683)
Q Consensus 421 ~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (683)
+.||.|++|| .++..... ..
T Consensus 121 ~~d~~i~~~d--~~~~~~~~-~~--------------------------------------------------------- 140 (313)
T 3odt_A 121 SWDKTAKVWK--EGSLVYNL-QA--------------------------------------------------------- 140 (313)
T ss_dssp ETTSEEEEEE--TTEEEEEE-EC---------------------------------------------------------
T ss_pred eCCCCEEEEc--CCcEEEec-cc---------------------------------------------------------
Confidence 9999999999 22221111 11
Q ss_pred EEeceEEEEeCCceeeeecCCCCCcEEEEcc-CCCEEEEEcCCCcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEE
Q psy15995 501 VTVKQISIVENGAKVSSLPIDYEPSSISLDH-EHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYL 579 (683)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 579 (683)
+...+.++++.| +++++++++.||.|++||. .+........+...+.+++|+|++. +
T Consensus 141 -------------------~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~ 198 (313)
T 3odt_A 141 -------------------HNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-F 198 (313)
T ss_dssp -------------------CSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-E
T ss_pred -------------------CCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-E
Confidence 223456677777 8889999999999999993 3333233334889999999999998 9
Q ss_pred EEEeCCCeEEEEECCCCccccccceeeecccEEEEEecCCCCeEEEeecCCcEEEEeCCCCceeeEeecCCCCCCeeEEE
Q psy15995 580 VASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQ 659 (683)
Q Consensus 580 ~~~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~l~ 659 (683)
++++.|+.|++||+.+++..... .+|...|++++|+|++ .|++++.||.|++||+.+++....+.. |...|++++
T Consensus 199 ~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~i~~~~ 273 (313)
T 3odt_A 199 ISCSNDGLIKLVDMHTGDVLRTY--EGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITL--PAISIWSVD 273 (313)
T ss_dssp EEEETTSEEEEEETTTCCEEEEE--ECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEEC--SSSCEEEEE
T ss_pred EEccCCCeEEEEECCchhhhhhh--hcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEec--cCceEEEEE
Confidence 99999999999999998876543 3499999999999999 689999999999999999998888866 678999999
Q ss_pred EccCCeEEEeeCCCcEEEEeecc
Q psy15995 660 WLDNDLLVSVGQDCNTKIWEIAP 682 (683)
Q Consensus 660 ~~~~~~l~s~~~d~~v~vw~~~~ 682 (683)
|+++..+++++.||.|++|++++
T Consensus 274 ~~~~~~~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 274 CMSNGDIIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp ECTTSCEEEEETTSCEEEEESCG
T ss_pred EccCCCEEEEeCCCcEEEEeCCC
Confidence 99555588899999999999874
No 82
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.6e-37 Score=300.70 Aligned_cols=288 Identities=13% Similarity=0.080 Sum_probs=223.5
Q ss_pred CeEEEeeCCCCCeEEEecC--------CeEEEEeCCCCccc----------ccccCcccceEEEEECCCCcEEEEe----
Q psy15995 46 QPIVLGGDPKGKNFLYTNG--------NSVIIRNIENPAIS----------DIYTEHSCAVNVAKYSPSGFYIASG---- 103 (683)
Q Consensus 46 ~~~~~~~s~~~~~l~~~~~--------~~i~v~~~~~~~~~----------~~~~~h~~~v~~~~~s~d~~~las~---- 103 (683)
.+.+++|+|||++|++|.+ +.|++|++..+... ..|.+|...|.+++++ ++.+++|
T Consensus 16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~ 93 (365)
T 4h5i_A 16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNEN 93 (365)
T ss_dssp CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCC
T ss_pred CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCC
Confidence 4789999999999999853 35999998765422 2367889999998865 4455554
Q ss_pred -------cCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEe--ecCCccEEEEeccccc
Q psy15995 104 -------DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIAS--GDISGKVRIWDTVNKE 174 (683)
Q Consensus 104 -------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~--~~~d~~i~iwd~~~~~ 174 (683)
+.|+.+++|++.+............. .........+..++|||||++||+ ++.|++|+|||+.+++
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~ 168 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDF-----DASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT 168 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECS-----SCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEeeeece-----eecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc
Confidence 45778999998765432221111000 000011134778999999998764 5578999999999988
Q ss_pred eeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCcee--eeecCCcCeEEEEeecCCCeEEEEeeCCC
Q psy15995 175 HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVG--EISGQSKPINSCDFKPSRPFRIITGSEDN 252 (683)
Q Consensus 175 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 252 (683)
.+.... +.+.|.+++|+|||+++++++.+. ..+|...++.... ....|...|.+++|+|+++. +++++.|+
T Consensus 169 ~~~~~~---~~~~V~~v~fspdg~~l~s~s~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~-l~~~s~d~ 241 (365)
T 4h5i_A 169 EKFEIE---TRGEVKDLHFSTDGKVVAYITGSS---LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTV-LIAASLKK 241 (365)
T ss_dssp EEEEEE---CSSCCCEEEECTTSSEEEEECSSC---EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEE-EEEEEESS
T ss_pred EEEEeC---CCCceEEEEEccCCceEEecccee---EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCE-EEEEecCC
Confidence 765543 567899999999999999988664 5677777776654 35678899999999999996 88887776
Q ss_pred ----eEEEEcCCCCce----eeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEE
Q psy15995 253 ----TIAVFEGPPFKF----KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW 324 (683)
Q Consensus 253 ----~i~iw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~ 324 (683)
.+++|+...... ...+.+|...|++++|+|+|++||+|+.|++|++||+++++++..+. .+|...|++++|
T Consensus 242 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~-~gH~~~V~~v~f 320 (365)
T 4h5i_A 242 GKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFK-QAHSFAITEVTI 320 (365)
T ss_dssp SCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEET-TSSSSCEEEEEE
T ss_pred cceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEec-CcccCCEEEEEE
Confidence 688898776553 34567899999999999999999999999999999999999988753 249999999999
Q ss_pred ccCCCEEEEEECCCcEEEEECCCC
Q psy15995 325 KPDGTQLLTASGDKTCKLWDIETK 348 (683)
Q Consensus 325 ~~~~~~l~~~~~dg~i~iwd~~~~ 348 (683)
+||+++|++++.|++|+||++...
T Consensus 321 Spdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 321 SPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999999999654
No 83
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-38 Score=310.35 Aligned_cols=321 Identities=13% Similarity=0.151 Sum_probs=232.1
Q ss_pred ccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCc--ccccccccccCCCCcccceeeeeecceeeeEeeccceEEEe
Q psy15995 81 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK--EHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIAS 158 (683)
Q Consensus 81 ~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 158 (683)
++.|.++|++++|+|+|++||+++.|+.|++||+.++ +.+..+..|. ..|.+++|+|++++|++
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~--------------~~v~~~~~s~~~~~l~s 72 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHD--------------KIVTCVDWAPKSNRIVT 72 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCS--------------SCEEEEEECTTTCCEEE
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCC--------------ceEEEEEEeCCCCEEEE
Confidence 4457789999999999999999999999999999988 6666666554 78999999999999999
Q ss_pred ecCCccEEEEeccccc-eeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCC---ceeeeec-CCcCeE
Q psy15995 159 GDISGKVRIWDTVNKE-HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGT---SVGEISG-QSKPIN 233 (683)
Q Consensus 159 ~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~v~ 233 (683)
++.|+.|++||+.+++ ......+..|...|.+++|+|+++++++++.++. +.+|+.+.++ ....+.+ |...|.
T Consensus 73 ~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~h~~~v~ 150 (377)
T 3dwl_C 73 CSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARV--ISVCYFEQENDWWVSKHLKRPLRSTIL 150 (377)
T ss_dssp EETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSC--EEECCC-----CCCCEEECSSCCSCEE
T ss_pred EeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCe--EEEEEECCcccceeeeEeecccCCCeE
Confidence 9999999999999876 3334456678899999999999999999987654 7788888776 4677777 999999
Q ss_pred EEEeecCCCeEEEEeeCCCeEEEEcCC------------------CCceeeeccccccCeEEEEECCCCCEEEEEcCCCc
Q psy15995 234 SCDFKPSRPFRIITGSEDNTIAVFEGP------------------PFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGK 295 (683)
Q Consensus 234 ~~~~~~~~~~~l~~~~~d~~i~iw~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 295 (683)
+++|+|++++ +++++.|+.|++||+. .++....+ +|...|.+++|+|++++|++++.||.
T Consensus 151 ~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~ 228 (377)
T 3dwl_C 151 SLDWHPNNVL-LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS 228 (377)
T ss_dssp EEEECTTSSE-EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTE
T ss_pred EEEEcCCCCE-EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCc
Confidence 9999999985 9999999999999985 34556666 89999999999999999999999999
Q ss_pred EEEEeCCCCee----EEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCce--eeEEEecCcce--------
Q psy15995 296 VFLYDGASADL----VSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSV--VSEFIMGNQVE-------- 361 (683)
Q Consensus 296 i~iw~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~-------- 361 (683)
|++||+.+++. +..+.. |...|.+++|+|++++|++++.++ +.+|+...... ...+.......
T Consensus 229 i~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (377)
T 3dwl_C 229 VTIAYPSAPEQPPRALITVKL--SQLPLRSLLWANESAIVAAGYNYS-PILLQGNESGWAHTRDLDAGTSKTSFTHTGNT 305 (377)
T ss_dssp EC-CEECSTTSCEEECCCEEC--SSSCEEEEEEEETTEEEEEESSSS-EEEECCCC---CCSBCCCSCCCCCCBSSSSSB
T ss_pred EEEEECCCCCCcceeeEeecC--CCCceEEEEEcCCCCEEEEEcCCc-EEEEEeCCCceEEEeeeccccccccccccccc
Confidence 99999999877 556654 889999999999999998887665 55777653221 11111000000
Q ss_pred ------eceEEEEecCCEEEEEecCCcEEEEecCCC-CcceeeeeeccccEEEEEEeCCC-C---EEEEEeCCCcEEEEc
Q psy15995 362 ------DQQVSCLWQGDYLLTVSLSGFISYLDVNNP-STPIRVIKGHNKPITALALSPDR-G---TVFTGSHDGFITRWN 430 (683)
Q Consensus 362 ------~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~---~l~~~~~dg~i~~w~ 430 (683)
...+.++... ......+.... .........|...|+++++.+.. . .+++++.||.|++||
T Consensus 306 ~~~~~~~~~~~~~~~~---------~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 306 GEGREEEGPVSFTALR---------STFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp CCCCCC----------------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred cccccccccccccccc---------ccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence 0000000000 11111111100 01122344699999999976644 3 699999999999998
Q ss_pred C
Q psy15995 431 A 431 (683)
Q Consensus 431 ~ 431 (683)
+
T Consensus 377 l 377 (377)
T 3dwl_C 377 L 377 (377)
T ss_dssp C
T ss_pred C
Confidence 5
No 84
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.1e-36 Score=283.50 Aligned_cols=253 Identities=19% Similarity=0.282 Sum_probs=211.4
Q ss_pred ccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCc--ccccccccccCCCCcccceeeeeecceeeeEeecc--ce
Q psy15995 79 DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK--EHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSI--GF 154 (683)
Q Consensus 79 ~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~ 154 (683)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++ +.+..+..|. ..|.+++|+++ ++
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~--------------~~V~~v~~s~~~~g~ 68 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHE--------------GPVWRVDWAHPKFGT 68 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCS--------------SCEEEEEECCGGGCS
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEcccc--------------CCeEEEEecCCCcCC
Confidence 457899999999999999999999999999999999753 4555555554 78999999864 89
Q ss_pred EEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCC--CCeEEEEecCCceEEEEEEccCCC--ceeeeecCCc
Q psy15995 155 YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD--NQRMVVVGEGRERFGHVFMSETGT--SVGEISGQSK 230 (683)
Q Consensus 155 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 230 (683)
+||+++.|++|++||+.+++......+..|...|.+++|+|+ +.++++++.++. +.+|+.+.+. ....+.+|..
T Consensus 69 ~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~--v~~wd~~~~~~~~~~~~~~h~~ 146 (297)
T 2pm7_B 69 ILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGK--VSVVEFKENGTTSPIIIDAHAI 146 (297)
T ss_dssp EEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSE--EEEEEBCSSSCBCCEEEECCSS
T ss_pred EEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCc--EEEEEecCCCceeeeeeecccC
Confidence 999999999999999998754344455667899999999998 888988887754 7888887653 2456789999
Q ss_pred CeEEEEeecCC------------CeEEEEeeCCCeEEEEcCCCCc----eeeeccccccCeEEEEECCCC---CEEEEEc
Q psy15995 231 PINSCDFKPSR------------PFRIITGSEDNTIAVFEGPPFK----FKMTKQEHSRFVQAVRYSPSG---SHFASAG 291 (683)
Q Consensus 231 ~v~~~~~~~~~------------~~~l~~~~~d~~i~iw~~~~~~----~~~~~~~~~~~v~~~~~~~~~---~~l~~~~ 291 (683)
.|.+++|+|++ ...|++++.|++|++||+++++ ....+.+|...|.+++|+|++ ++|++++
T Consensus 147 ~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s 226 (297)
T 2pm7_B 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS 226 (297)
T ss_dssp CEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEE
Confidence 99999999973 1259999999999999987765 566788999999999999985 7999999
Q ss_pred CCCcEEEEeCCCCe---eEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCC
Q psy15995 292 FDGKVFLYDGASAD---LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET 347 (683)
Q Consensus 292 ~dg~i~iw~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 347 (683)
.|++|++||+++.. ....+....|...|.+++|+|++++|++++.|+.|++|+...
T Consensus 227 ~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 99999999987643 122332234788999999999999999999999999999864
No 85
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=6.4e-37 Score=299.83 Aligned_cols=295 Identities=14% Similarity=0.209 Sum_probs=245.0
Q ss_pred cccCcccceEEEEECCC----CcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeecc---
Q psy15995 80 IYTEHSCAVNVAKYSPS----GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSI--- 152 (683)
Q Consensus 80 ~~~~h~~~v~~~~~s~d----~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--- 152 (683)
...+|.++|++++|+|+ ...+++++.++.|++||+.+++.+..+..+... .+...+.+++|+|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~ 83 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDA---------DADENFYTCAWTYDSNT 83 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECS---------CTTCCEEEEEEEECTTT
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeecccc---------CCCCcEEEEEeccCCCC
Confidence 34589999999999984 445556666679999999988776665543211 12266999999999
Q ss_pred -ceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcC-CCCeEEEEecCCceEEEEEEccCCCceeee---ec
Q psy15995 153 -GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP-DNQRMVVVGEGRERFGHVFMSETGTSVGEI---SG 227 (683)
Q Consensus 153 -~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 227 (683)
+.+|++++.||.|++||+.+++.+. .+..|...|.+++|+| +++++++++.++. +.+|+.++++.+..+ .+
T Consensus 84 ~~~~l~~~~~dg~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~ 159 (366)
T 3k26_A 84 SHPLLAVAGSRGIIRIINPITMQCIK--HYVGHGNAINELKFHPRDPNLLLSVSKDHA--LRLWNIQTDTLVAIFGGVEG 159 (366)
T ss_dssp CCEEEEEEETTCEEEEECTTTCCEEE--EEESCCSCEEEEEECSSCTTEEEEEETTSC--EEEEETTTTEEEEEECSTTS
T ss_pred CCCEEEEecCCCEEEEEEchhceEee--eecCCCCcEEEEEECCCCCCEEEEEeCCCe--EEEEEeecCeEEEEeccccc
Confidence 7899999999999999999887654 4556789999999999 8999998887654 789999999888887 78
Q ss_pred CCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccc----------------------------cccCeEEEE
Q psy15995 228 QSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE----------------------------HSRFVQAVR 279 (683)
Q Consensus 228 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~----------------------------~~~~v~~~~ 279 (683)
|...|.+++|+|++.. +++++.||.|++||+++++....+.. |...|.+++
T Consensus 160 ~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (366)
T 3k26_A 160 HRDEVLSADYDLLGEK-IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVR 238 (366)
T ss_dssp CSSCEEEEEECTTSSE-EEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEE
T ss_pred ccCceeEEEECCCCCE-EEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEE
Confidence 9999999999999985 99999999999999988776554443 999999999
Q ss_pred ECCCCCEEEEEcCCCcEEEEeCCCCee--------------EEeccCCccccCeEEEEEccC--CCEEEEEECCCcEEEE
Q psy15995 280 YSPSGSHFASAGFDGKVFLYDGASADL--------------VSELGNPAHKGGVYAVAWKPD--GTQLLTASGDKTCKLW 343 (683)
Q Consensus 280 ~~~~~~~l~~~~~dg~i~iw~~~~~~~--------------~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iw 343 (683)
|+ ++++++++.||.|++||+.+++. +..+.. |...|.+++|+|+ +++|++++.||.|++|
T Consensus 239 ~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vw 314 (366)
T 3k26_A 239 WL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY--SQCDIWYMRFSMDFWQKMLALGNQVGKLYVW 314 (366)
T ss_dssp EE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC--SSCCSSCCCCEECTTSSEEEEECTTSCEEEE
T ss_pred Ec--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccc--cCCcEEEEEEcCCCCCcEEEEEecCCcEEEE
Confidence 98 77999999999999999887643 555543 8889999999999 9999999999999999
Q ss_pred ECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeec--cccEEEEEEeCCCCEEEEEe
Q psy15995 344 DIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGH--NKPITALALSPDRGTVFTGS 421 (683)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~ 421 (683)
|+.+++.... ....+..| ...|++++|+|++++|++++
T Consensus 315 d~~~~~~~~~----------------------------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 354 (366)
T 3k26_A 315 DLEVEDPHKA----------------------------------------KCTTLTHHKCGAAIRQTSFSRDSSILIAVC 354 (366)
T ss_dssp ECCSSSGGGC----------------------------------------EEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred ECCCCCCccc----------------------------------------cceEEcccccCCceEEEEeCCCCCeEEEEe
Confidence 9998764321 11234455 78999999999999999999
Q ss_pred CCCcEEEEcCC
Q psy15995 422 HDGFITRWNAK 432 (683)
Q Consensus 422 ~dg~i~~w~~~ 432 (683)
.||.|++||+.
T Consensus 355 ~dg~i~iwd~~ 365 (366)
T 3k26_A 355 DDASIWRWDRL 365 (366)
T ss_dssp TTSEEEEEEC-
T ss_pred CCCEEEEEEec
Confidence 99999999985
No 86
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=7.5e-36 Score=296.40 Aligned_cols=283 Identities=18% Similarity=0.296 Sum_probs=241.4
Q ss_pred EEEeeCCCCCeEEEecCCeEEEEeCCCCccccccc--CcccceEEEEECCCCcEEEEecCCCCEEEEeCCCccccccccc
Q psy15995 48 IVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYT--EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 125 (683)
Q Consensus 48 ~~~~~s~~~~~l~~~~~~~i~v~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~ 125 (683)
..++||++ ++||++.|+.|+|||..+++..+.+. +|...|++++|+|||++||+|+.||+|+|||+.+++.+..+..
T Consensus 109 ~~l~wS~~-n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~ 187 (420)
T 4gga_A 109 NLVDWSSG-NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS 187 (420)
T ss_dssp BCEEECTT-SEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred eeEEECCC-CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeC
Confidence 45889986 58999999999999999998776654 6788999999999999999999999999999999998888776
Q ss_pred ccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEec
Q psy15995 126 HPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGE 205 (683)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 205 (683)
|. ..+.+ ++.++..|++|+.|+.+++||....... ...+..|...+..+.|+|+++++++++.
T Consensus 188 h~--------------~~v~~--~s~~~~~l~sgs~d~~i~~~d~~~~~~~-~~~~~~h~~~~~~~~~~~~g~~l~s~~~ 250 (420)
T 4gga_A 188 HS--------------ARVGS--LSWNSYILSSGSRSGHIHHHDVRVAEHH-VATLSGHSQEVCGLRWAPDGRHLASGGN 250 (420)
T ss_dssp CS--------------SCEEE--EEEETTEEEEEETTSEEEEEETTSSSCE-EEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred CC--------------CceEE--EeeCCCEEEEEeCCCceeEeeeccccee-eEEecccccceeeeeecCCCCeeeeeec
Confidence 65 44544 4557889999999999999998875433 3446678899999999999999999988
Q ss_pred CCceEEEEEEccCCC----ceeeeecCCcCeEEEEeecCCCeEEEE--eeCCCeEEEEcCCCCceeeeccccccCeEEEE
Q psy15995 206 GRERFGHVFMSETGT----SVGEISGQSKPINSCDFKPSRPFRIIT--GSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVR 279 (683)
Q Consensus 206 ~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~ 279 (683)
++. +.+|+...++ .+.....|...|.+++|+|.+...+++ |+.|++|++||+.+++....+..| ..+.++.
T Consensus 251 D~~--v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~ 327 (420)
T 4gga_A 251 DNL--VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSIL 327 (420)
T ss_dssp TSC--EEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEE
T ss_pred ccc--ceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeee
Confidence 764 6888887664 355678899999999999988876665 457999999999999988888755 5689999
Q ss_pred ECCCCCEEEEEc--CCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeE
Q psy15995 280 YSPSGSHFASAG--FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSE 353 (683)
Q Consensus 280 ~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 353 (683)
|+|+++.+++++ .|+.|++||+.+++.+..+.. |.+.|.+++|+|++++|++++.|++|++||+....+..+
T Consensus 328 ~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~g--H~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~ 401 (420)
T 4gga_A 328 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG--HTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR 401 (420)
T ss_dssp EETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC--
T ss_pred ecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccch
Confidence 999999888764 689999999999999999875 999999999999999999999999999999987655443
No 87
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.7e-36 Score=293.39 Aligned_cols=298 Identities=13% Similarity=0.086 Sum_probs=221.9
Q ss_pred ccceEEEEECCCCcEEEEecCCC-------CEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEE
Q psy15995 85 SCAVNVAKYSPSGFYIASGDISG-------KVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIA 157 (683)
Q Consensus 85 ~~~v~~~~~s~d~~~las~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 157 (683)
.-||.+++|+|||++||+|+.+. .|++|++..+........+... ......+...+.++ ++++..++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~----~~~l~~~~~~v~s~--~~~~~~~~ 87 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILS----EFALEDNDDSPTAI--DASKGIIL 87 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEE----EEECCTTSCCCCEE--EEETTEEE
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeee----EEEccCCCCceEEE--EeCCCEEE
Confidence 45899999999999999987543 4999999876433221111100 00000011234443 33444444
Q ss_pred -----------eecCCccEEEEeccccceeee-------ccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCC
Q psy15995 158 -----------SGDISGKVRIWDTVNKEHILK-------NEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG 219 (683)
Q Consensus 158 -----------~~~~d~~i~iwd~~~~~~~~~-------~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~ 219 (683)
+++.|+.+++|++........ .....+...+..++|+|||+++++++.+.+..+++|+.+++
T Consensus 88 ~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~ 167 (365)
T 4h5i_A 88 VGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL 167 (365)
T ss_dssp EECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT
T ss_pred EEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC
Confidence 456688899999876542211 11222345688999999999999998887788999999999
Q ss_pred CceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceee--eccccccCeEEEEECCCCCEEEEEcCCC---
Q psy15995 220 TSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM--TKQEHSRFVQAVRYSPSGSHFASAGFDG--- 294 (683)
Q Consensus 220 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg--- 294 (683)
+.+..+. |...|.+++|+|++++ +++++.++ +.+|+..+++... ....|...|.+++|+|+++.+++++.|+
T Consensus 168 ~~~~~~~-~~~~V~~v~fspdg~~-l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~ 244 (365)
T 4h5i_A 168 TEKFEIE-TRGEVKDLHFSTDGKV-VAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKG 244 (365)
T ss_dssp EEEEEEE-CSSCCCEEEECTTSSE-EEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCC
T ss_pred cEEEEeC-CCCceEEEEEccCCce-EEecccee-EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcce
Confidence 9888876 7788999999999995 78877555 5566655655443 4457888999999999999999998887
Q ss_pred -cEEEEeCCCCeeE--EeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecC
Q psy15995 295 -KVFLYDGASADLV--SELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQG 371 (683)
Q Consensus 295 -~i~iw~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (683)
.+++|++...... .......|...|.+++|+|++++|++++.|+.|+|||+++++.+..+
T Consensus 245 ~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~----------------- 307 (365)
T 4h5i_A 245 IVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF----------------- 307 (365)
T ss_dssp EEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE-----------------
T ss_pred eEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe-----------------
Confidence 6888988766432 12222348889999999999999999999999999999988765432
Q ss_pred CEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC
Q psy15995 372 DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTG 434 (683)
Q Consensus 372 ~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~ 434 (683)
+.+|...|++++|+||+++|++++.|++|+|||+...
T Consensus 308 --------------------------~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 308 --------------------------KQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp --------------------------TTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred --------------------------cCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 3579999999999999999999999999999999654
No 88
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-37 Score=306.24 Aligned_cols=283 Identities=11% Similarity=0.129 Sum_probs=223.4
Q ss_pred CCCeEEEeeCCCCCeEEEe-cCCeEEEEeCCCC--cccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcc--
Q psy15995 44 RGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENP--AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE-- 118 (683)
Q Consensus 44 ~~~~~~~~~s~~~~~l~~~-~~~~i~v~~~~~~--~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~-- 118 (683)
.+.+.+++|+|+|++|+++ .++.|++||+.++ +....+.+|...|++++|+|++++|++++.|+.|++||+.+++
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~ 90 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTW 90 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CC
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCce
Confidence 4578899999999999998 6899999999988 7888899999999999999999999999999999999999886
Q ss_pred -cccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEecccccee-eeccccc-cCCCeeEEEEcC
Q psy15995 119 -HILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHI-LKNEFHP-IGGPIKDIAWSP 195 (683)
Q Consensus 119 -~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~-~~~~i~~~~~s~ 195 (683)
....+..+. ..+.+++|+|++++|++++.|+.|++||+.+++.. ....+.. |...|.+++|+|
T Consensus 91 ~~~~~~~~~~--------------~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 156 (377)
T 3dwl_C 91 KQTLVLLRLN--------------RAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP 156 (377)
T ss_dssp CCEEECCCCS--------------SCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT
T ss_pred eeeeEecccC--------------CceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC
Confidence 333333333 67999999999999999999999999999987631 1223334 789999999999
Q ss_pred CCCeEEEEecCCceEEEEEEcc------------------CCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEE
Q psy15995 196 DNQRMVVVGEGRERFGHVFMSE------------------TGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF 257 (683)
Q Consensus 196 ~~~~l~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw 257 (683)
+++++++++.++. +.+|+.. .++.+..+ +|...|.+++|+|++++ |++++.|+.|++|
T Consensus 157 ~~~~l~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~-l~~~~~d~~i~iw 232 (377)
T 3dwl_C 157 NNVLLAAGCADRK--AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNA-LAYAGHDSSVTIA 232 (377)
T ss_dssp TSSEEEEEESSSC--EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSC-EEEEETTTEEC-C
T ss_pred CCCEEEEEeCCCE--EEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCE-EEEEeCCCcEEEE
Confidence 9999999987754 7888874 24455566 89999999999999995 9999999999999
Q ss_pred cCCCCce----eeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCee--EEe----------------------
Q psy15995 258 EGPPFKF----KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADL--VSE---------------------- 309 (683)
Q Consensus 258 ~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~---------------------- 309 (683)
|+.+++. +..+..|...|.+++|+|++++|++++.++.+ +|+...... ...
T Consensus 233 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (377)
T 3dwl_C 233 YPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREE 311 (377)
T ss_dssp EECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC
T ss_pred ECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccc
Confidence 9999887 78888999999999999999999998866555 676542110 000
Q ss_pred ------------c--------------cCCccccCeEEEEEccCC-C---EEEEEECCCcEEEEEC
Q psy15995 310 ------------L--------------GNPAHKGGVYAVAWKPDG-T---QLLTASGDKTCKLWDI 345 (683)
Q Consensus 310 ------------~--------------~~~~~~~~i~~~~~~~~~-~---~l~~~~~dg~i~iwd~ 345 (683)
+ ....|...|.++++.+.. . .|++++.||.|++||+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 312 EGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0 001288999999976643 3 6999999999999985
No 89
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=9.3e-37 Score=297.51 Aligned_cols=290 Identities=17% Similarity=0.211 Sum_probs=235.4
Q ss_pred cccCCCeEEEeeCCCCCeEEEec-----CCeEEEEeCCCCcccccc-cCcccceEEEEECCC---CcEEEEecCCCCEEE
Q psy15995 41 RTQRGQPIVLGGDPKGKNFLYTN-----GNSVIIRNIENPAISDIY-TEHSCAVNVAKYSPS---GFYIASGDISGKVRI 111 (683)
Q Consensus 41 ~~~~~~~~~~~~s~~~~~l~~~~-----~~~i~v~~~~~~~~~~~~-~~h~~~v~~~~~s~d---~~~las~~~dg~i~i 111 (683)
..+.+.+.+++|+|+++.++++. ++.|.+||+++++..... .+|...|.+++|+|+ |++|++++.||.|++
T Consensus 15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 94 (357)
T 3i2n_A 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHI 94 (357)
T ss_dssp EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEE
T ss_pred cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEE
Confidence 44677999999999997665443 789999999998765443 379999999999998 799999999999999
Q ss_pred EeCCCcc-cccccccccCCCCcccceeeeeecceeee------EeeccceEEEeecCCccEEEEeccccc-eeeeccccc
Q psy15995 112 WDTVNKE-HILKNEFHPIGGPIKDIGTLLSLTSIRNI------LVLSIGFYIASGDISGKVRIWDTVNKE-HILKNEFHP 183 (683)
Q Consensus 112 wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------~~s~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~ 183 (683)
||+.+++ .+..+..|. ..+.++ +|+|++++|++++.||.|++||+.+++ .+.......
T Consensus 95 wd~~~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 160 (357)
T 3i2n_A 95 WNLEAPEMPVYSVKGHK--------------EIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQ 160 (357)
T ss_dssp ECTTSCSSCSEEECCCS--------------SCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCT
T ss_pred EeCCCCCccEEEEEecc--------------cceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccC
Confidence 9999887 666665554 556666 568899999999999999999999876 333322211
Q ss_pred --cCCCeeEEE----EcCCCCeEEEEecCCceEEEEEEccCCCceeeeecCCcCeEEEEeec---CCCeEEEEeeCCCeE
Q psy15995 184 --IGGPIKDIA----WSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKP---SRPFRIITGSEDNTI 254 (683)
Q Consensus 184 --~~~~i~~~~----~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~d~~i 254 (683)
....+.+++ |+|+++++++++.++. +.+|+.++++.. ....|...|.+++|+| ++.. +++++.||.|
T Consensus 161 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~--i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~-l~~~~~dg~i 236 (357)
T 3i2n_A 161 GENKRDCWTVAFGNAYNQEERVVCAGYDNGD--IKLFDLRNMALR-WETNIKNGVCSLEFDRKDISMNK-LVATSLEGKF 236 (357)
T ss_dssp TSCCCCEEEEEEECCCC-CCCEEEEEETTSE--EEEEETTTTEEE-EEEECSSCEEEEEESCSSSSCCE-EEEEESTTEE
T ss_pred CCCCCceEEEEEEeccCCCCCEEEEEccCCe--EEEEECccCcee-eecCCCCceEEEEcCCCCCCCCE-EEEECCCCeE
Confidence 134788888 7899999999887654 788998887764 4477899999999999 7775 9999999999
Q ss_pred EEEcCCCCceeeecc-----ccccCeEEEEECCCCC-EEEEEcCCCcEEEEeCCCC-------------------eeEEe
Q psy15995 255 AVFEGPPFKFKMTKQ-----EHSRFVQAVRYSPSGS-HFASAGFDGKVFLYDGASA-------------------DLVSE 309 (683)
Q Consensus 255 ~iw~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~-------------------~~~~~ 309 (683)
++||+++++....+. +|...|.+++|+|+++ +|++++.||.|++||++.+ +.+..
T Consensus 237 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (357)
T 3i2n_A 237 HVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQN 316 (357)
T ss_dssp EEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEE
T ss_pred EEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeec
Confidence 999988776655554 8999999999999998 8999999999999998754 24445
Q ss_pred ccCCccccCeEEEEEccCCCEEE-EEECCCcEEEEECCCCce
Q psy15995 310 LGNPAHKGGVYAVAWKPDGTQLL-TASGDKTCKLWDIETKSV 350 (683)
Q Consensus 310 ~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~ 350 (683)
+.. |...|.+++|+|++++|+ +++.||.|++||+.+.+.
T Consensus 317 ~~~--~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 317 VTL--STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEC--CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred ccc--CCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 543 899999999999999998 799999999999987643
No 90
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-37 Score=301.10 Aligned_cols=314 Identities=13% Similarity=0.061 Sum_probs=248.3
Q ss_pred cCCCeEEEeeCCCCCeEEEec-CCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCccccc
Q psy15995 43 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL 121 (683)
Q Consensus 43 ~~~~~~~~~~s~~~~~l~~~~-~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~ 121 (683)
...-+.+++|||||+++|+++ |++|+ |.+.+ ..+++|...|.+++|+|+| .++.+.+|+.+... +.
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~---~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-~~ 80 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA---KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-LL 80 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCC---SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC-SS
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--ccccc---ceecCCCccEEEEEECCCC-------CcceEEEEeCCCce-Ee
Confidence 346778899999999999984 67787 65544 4457999999999999999 56666666644332 22
Q ss_pred ccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCC-----CeeEEEEcCC
Q psy15995 122 KNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGG-----PIKDIAWSPD 196 (683)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~i~~~~~s~~ 196 (683)
.+.. . ..|.+++|||||++||+++.||.|++||.+. .+.. +. |.. .+.+++||||
T Consensus 81 ~~~~-~--------------~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~--l~-~~~~~~~~sv~svafSPD 140 (588)
T 2j04_A 81 NSQP-V--------------CYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTN--LD-SKGNLSSRTYHCFEWNPI 140 (588)
T ss_dssp TTSC-S--------------CCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEE--CC-CSSCSTTTCEEEEEECSS
T ss_pred ecCC-C--------------CcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeee--cc-CCCccccccEEEEEEcCC
Confidence 2111 1 6799999999999999999999999999654 2222 22 333 5999999999
Q ss_pred CCeEEEEecCCceEEEEEEccCCCc-------eeee----ecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCcee
Q psy15995 197 NQRMVVVGEGRERFGHVFMSETGTS-------VGEI----SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK 265 (683)
Q Consensus 197 ~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~ 265 (683)
|++|++++.++. +.+|+.+.+.. +..+ .+|...|.+++|+|++ +++++.|+++++|++...+..
T Consensus 141 G~~LAsgs~DGt--VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~ 215 (588)
T 2j04_A 141 ESSIVVGNEDGE--LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQ 215 (588)
T ss_dssp SSCEEEEETTSE--EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSC
T ss_pred CCEEEEEcCCCE--EEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccc
Confidence 999999998765 78999888753 4565 6778899999999998 788899999999999887742
Q ss_pred ---eec-cccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEE--ccCCCEEEEEECCCc
Q psy15995 266 ---MTK-QEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW--KPDGTQLLTASGDKT 339 (683)
Q Consensus 266 ---~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~ 339 (683)
..+ .+|...|.+++|+ |+.||+++ +++|++||+.+++....... |...+..++| +|++..+++++++|+
T Consensus 216 ~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~g--h~~~V~~va~~~s~d~~~La~a~edG~ 290 (588)
T 2j04_A 216 PVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTG--SLENFHIIPLNHEKESTILLMSNKTSY 290 (588)
T ss_dssp CCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECS--CCSCCCEEEETTCSSCEEEEECSSCEE
T ss_pred cceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcC--CCceEEEEEeeeCCCCCEEEEEcCCCC
Confidence 345 4788999999999 68899988 69999999998887443323 9999999999 999999999999999
Q ss_pred EEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEE
Q psy15995 340 CKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFT 419 (683)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 419 (683)
++|.... +.+.|++..++.. ++.+++|+..... ...+.+ ...|.+++++|||+.+|+
T Consensus 291 -klw~~d~-----------------~~~spd~~l~a~~--d~~v~lW~~~g~~--l~~~~~-~~~I~~va~SPdG~~lA~ 347 (588)
T 2j04_A 291 -KVLLEDE-----------------LHVTADNIIAPYL--EKKFKKWSTIWNE--FNNYET-TLVIHGISLSPDGYSIAI 347 (588)
T ss_dssp -EEEESSS-----------------EEEECCCSSHHHH--HHHHHHTTTTTTS--SSSSCC-EEEEEEEEECTTSSEEEE
T ss_pred -EEEeecc-----------------EEECCCceEEEEc--CCEEEEEECCCCc--eeeecc-ceEEEEEEECCCCCEEEE
Confidence 9999871 3456666666553 8999999875432 334444 677999999999999998
Q ss_pred EeC
Q psy15995 420 GSH 422 (683)
Q Consensus 420 ~~~ 422 (683)
++.
T Consensus 348 ~~~ 350 (588)
T 2j04_A 348 VYD 350 (588)
T ss_dssp EEE
T ss_pred EEe
Confidence 864
No 91
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=9.3e-35 Score=288.52 Aligned_cols=291 Identities=21% Similarity=0.353 Sum_probs=238.6
Q ss_pred CeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeE
Q psy15995 274 FVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSE 353 (683)
Q Consensus 274 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 353 (683)
.++.++|+++ +.|++|. |++|++||..+++....+....|...|++++|+|++++|++|+.||.|++||+++++.+..
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 4677999976 4777765 9999999999999988877666888999999999999999999999999999999988776
Q ss_pred EEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCC
Q psy15995 354 FIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 433 (683)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~ 433 (683)
+... .....++.+++..+++++.++.+.+||.......+..+.+|...+..+.++|+++++++++.|+.+++|+..+
T Consensus 185 ~~~h---~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~ 261 (420)
T 4gga_A 185 MTSH---SARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261 (420)
T ss_dssp ECCC---SSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EeCC---CCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence 6432 2344556778999999999999999999988888888999999999999999999999999999999999987
Q ss_pred CCcceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCc
Q psy15995 434 GENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGA 513 (683)
Q Consensus 434 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (683)
++.......
T Consensus 262 ~~~~~~~~~----------------------------------------------------------------------- 270 (420)
T 4gga_A 262 GEGGWVPLQ----------------------------------------------------------------------- 270 (420)
T ss_dssp CSSCSCCSE-----------------------------------------------------------------------
T ss_pred ccccceeee-----------------------------------------------------------------------
Confidence 654221100
Q ss_pred eeeeecCCCCCcEEEEccCCC-EEEE--EcCCCcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEe--CCCeE
Q psy15995 514 KVSSLPIDYEPSSISLDHEHG-LVAV--GGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASD--AHRKV 588 (683)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~-~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i 588 (683)
....+...+.+++++|++. ++++ |+.|+.|++||+.++...... .+...+.++.|+|+++.+++++ .|+.|
T Consensus 271 --~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~--~~~~~v~~~~~~~~~~~lv~~sg~~d~~I 346 (420)
T 4gga_A 271 --TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV--DAHSQVCSILWSPHYKELISGHGFAQNQL 346 (420)
T ss_dssp --EECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE--ECSSCEEEEEEETTTTEEEEEECTTTCCE
T ss_pred --eecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee--ccccceeeeeecCCCCeEEEEEecCCCEE
Confidence 0011233567778888654 4444 457999999999998876443 3567899999999999998765 78999
Q ss_pred EEEECCCCccccccceeeecccEEEEEecCCCCeEEEeecCCcEEEEeCCCCceeeEe
Q psy15995 589 VLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIII 646 (683)
Q Consensus 589 ~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~~~~~~~ 646 (683)
+|||+.+++.+.. +.+|.+.|++++|+|||++||||+.|++|++||+.+..+....
T Consensus 347 ~iwd~~~~~~v~~--l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~ 402 (420)
T 4gga_A 347 VIWKYPTMAKVAE--LKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRR 402 (420)
T ss_dssp EEEETTTCCEEEE--ECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC---
T ss_pred EEEECCCCcEEEE--EcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchh
Confidence 9999999988754 4459999999999999999999999999999999876655444
No 92
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=276.33 Aligned_cols=285 Identities=21% Similarity=0.353 Sum_probs=235.7
Q ss_pred eEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEE
Q psy15995 275 VQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEF 354 (683)
Q Consensus 275 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 354 (683)
.++|+||+++ .|++|. |++|++||+.+++.+..+....|...|.+++|+|++++|++|+.||.|++||+++++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 5679999986 677665 99999999999999988876668899999999999999999999999999999999988776
Q ss_pred EecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC
Q psy15995 355 IMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTG 434 (683)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~ 434 (683)
.... .....+.+++..+++++.++.+.+|+..........+.+|...+..+.++++++++++++.|+.|++||+.++
T Consensus 106 ~~h~---~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 182 (318)
T 4ggc_A 106 TSHS---ARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 182 (318)
T ss_dssp ECCS---SCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCB
T ss_pred cCcc---ceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCC
Confidence 5432 3345667789999999999999999999888888889999999999999999999999999999999999876
Q ss_pred CcceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCce
Q psy15995 435 ENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAK 514 (683)
Q Consensus 435 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (683)
+.......
T Consensus 183 ~~~~~~~~------------------------------------------------------------------------ 190 (318)
T 4ggc_A 183 EGGWVPLQ------------------------------------------------------------------------ 190 (318)
T ss_dssp TTBSCCSE------------------------------------------------------------------------
T ss_pred ccccccee------------------------------------------------------------------------
Confidence 54322210
Q ss_pred eeeecCCCCCcEEEEccCCCE---EEEEcCCCcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEe--CCCeEE
Q psy15995 515 VSSLPIDYEPSSISLDHEHGL---VAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASD--AHRKVV 589 (683)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~---l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~ 589 (683)
........+..++++|++.. +++++.++.|++||........ ...+...+..+.|+|+++.+++++ .|+.|+
T Consensus 191 -~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~ 267 (318)
T 4ggc_A 191 -TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS--AVDAHSQVCSILWSPHYKELISGHGFAQNQLV 267 (318)
T ss_dssp -EECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE--EEECSSCEEEEEEETTTTEEEEEECTTTCCEE
T ss_pred -eecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc--cccceeeeeeeeecccccceEEEEEcCCCEEE
Confidence 00011223456666666543 3466788999999998876653 334778899999999999887754 799999
Q ss_pred EEECCCCccccccceeeecccEEEEEecCCCCeEEEeecCCcEEEEeCCCCc
Q psy15995 590 LYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPA 641 (683)
Q Consensus 590 i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~~ 641 (683)
+||+.+++.+.. +.+|.+.|++++|+||+++||+|+.||+|+|||+.+..
T Consensus 268 iwd~~~~~~~~~--l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 268 IWKYPTMAKVAE--LKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEETTTCCEEEE--ECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEECCCCcEEEE--EcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 999999988754 44599999999999999999999999999999997654
No 93
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=277.03 Aligned_cols=279 Identities=17% Similarity=0.273 Sum_probs=237.2
Q ss_pred EEEeeCCCCCeEEEecCCeEEEEeCCCCccccccc--CcccceEEEEECCCCcEEEEecCCCCEEEEeCCCccccccccc
Q psy15995 48 IVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYT--EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 125 (683)
Q Consensus 48 ~~~~~s~~~~~l~~~~~~~i~v~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~ 125 (683)
.+++||+++ +||++.|+.|+|||+++++.++.++ +|...|++++|+|++++||+|+.||+|++||+.+++.+..+..
T Consensus 29 ~~l~WS~~~-~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~ 107 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS 107 (318)
T ss_dssp BCEEECTTS-EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred eEEEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecC
Confidence 468999987 8999999999999999999877654 6888999999999999999999999999999999998887766
Q ss_pred ccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEec
Q psy15995 126 HPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGE 205 (683)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 205 (683)
|. .. ...+++++..+++++.++.+++|+....... ...+..|...+..+.++++++++++++.
T Consensus 108 h~--------------~~--~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 170 (318)
T 4ggc_A 108 HS--------------AR--VGSLSWNSYILSSGSRSGHIHHHDVRVAEHH-VATLSGHSQEVCGLRWAPDGRHLASGGN 170 (318)
T ss_dssp CS--------------SC--EEEEEEETTEEEEEETTSEEEEEETTSSSCE-EEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred cc--------------ce--EEEeecCCCEEEEEecCCceEeeecCCCcee-EEEEcCccCceEEEEEcCCCCEEEEEec
Confidence 64 22 3356778889999999999999999876543 3445677899999999999999999887
Q ss_pred CCceEEEEEEccCCCc----eeeeecCCcCeEEEEeecCCCeEE--EEeeCCCeEEEEcCCCCceeeeccccccCeEEEE
Q psy15995 206 GRERFGHVFMSETGTS----VGEISGQSKPINSCDFKPSRPFRI--ITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVR 279 (683)
Q Consensus 206 ~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l--~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~ 279 (683)
++. +.+|+..+++. ......+...|.++.++|.+...+ ++++.+++|++||.......... .+...+..+.
T Consensus 171 d~~--i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~ 247 (318)
T 4ggc_A 171 DNL--VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSIL 247 (318)
T ss_dssp TSC--EEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEE
T ss_pred Ccc--eeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeeeeeee
Confidence 754 78899887653 345667888999999999887544 46678999999998887766554 4667899999
Q ss_pred ECCCCCEEEEEc--CCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCc
Q psy15995 280 YSPSGSHFASAG--FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKS 349 (683)
Q Consensus 280 ~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 349 (683)
|+|+++.+++++ .|+.|++||+++++.+..+.. |.+.|.+++|+|++++|++++.||+|++||+.+..
T Consensus 248 ~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~g--H~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 248 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG--HTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred ecccccceEEEEEcCCCEEEEEECCCCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 999999877654 799999999999999999875 99999999999999999999999999999987643
No 94
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=7.7e-35 Score=273.99 Aligned_cols=245 Identities=18% Similarity=0.233 Sum_probs=204.6
Q ss_pred ccCCCeEEEeeCCCCCeEEEe-cCCeEEEEeCCC--CcccccccCcccceEEEEECCC--CcEEEEecCCCCEEEEeCCC
Q psy15995 42 TQRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIEN--PAISDIYTEHSCAVNVAKYSPS--GFYIASGDISGKVRIWDTVN 116 (683)
Q Consensus 42 ~~~~~~~~~~~s~~~~~l~~~-~~~~i~v~~~~~--~~~~~~~~~h~~~v~~~~~s~d--~~~las~~~dg~i~iwd~~~ 116 (683)
.+.+.+.+++|+|+|++||++ .++.|+|||+++ .+.+..+.+|.++|.+++|+++ +++||+|+.|++|+|||+.+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence 466789999999999999988 589999999975 4677889999999999999874 89999999999999999987
Q ss_pred cc--cccccccccCCCCcccceeeeeecceeeeEeecc--ceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEE
Q psy15995 117 KE--HILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSI--GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIA 192 (683)
Q Consensus 117 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~ 192 (683)
++ .+..+..|. ..|.+++|+|+ +.+|++++.|+.|++||+.++.......+..|...|.+++
T Consensus 87 ~~~~~~~~~~~h~--------------~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~ 152 (297)
T 2pm7_B 87 GRWSQIAVHAVHS--------------ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 152 (297)
T ss_dssp SCBCCCEEECCCS--------------SCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEE
T ss_pred CceEEEEEeecCC--------------CceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEe
Confidence 64 233333332 67999999998 8899999999999999998764333345667889999999
Q ss_pred EcCC-------------CCeEEEEecCCceEEEEEEccCCC----ceeeeecCCcCeEEEEeecCC--CeEEEEeeCCCe
Q psy15995 193 WSPD-------------NQRMVVVGEGRERFGHVFMSETGT----SVGEISGQSKPINSCDFKPSR--PFRIITGSEDNT 253 (683)
Q Consensus 193 ~s~~-------------~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d~~ 253 (683)
|+|+ +++|++++.++. +++|+.+.++ ....+.+|...|.+++|+|++ ..+|++++.|++
T Consensus 153 ~~p~~~~~~~~~~~~~~~~~l~sgs~D~~--v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~ 230 (297)
T 2pm7_B 153 WAPATIEEDGEHNGTKESRKFVTGGADNL--VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT 230 (297)
T ss_dssp ECCCC------------CCEEEEEETTSC--EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred ecCCcccccccCCCCCCcceEEEEcCCCc--EEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc
Confidence 9997 468888887754 7889988766 566788999999999999985 346999999999
Q ss_pred EEEEcCCCCc---eeeec--cccccCeEEEEECCCCCEEEEEcCCCcEEEEeCC
Q psy15995 254 IAVFEGPPFK---FKMTK--QEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGA 302 (683)
Q Consensus 254 i~iw~~~~~~---~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 302 (683)
|++||.+... ....+ ..|...|.+++|+|++++|++++.||.|++|+..
T Consensus 231 v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 9999987643 12223 5688899999999999999999999999999976
No 95
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.3e-35 Score=281.84 Aligned_cols=251 Identities=21% Similarity=0.288 Sum_probs=204.0
Q ss_pred ccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcc--cccccccccCCCCcccceeeeeecceeeeEeec--cce
Q psy15995 79 DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE--HILKNEFHPIGGPIKDIGTLLSLTSIRNILVLS--IGF 154 (683)
Q Consensus 79 ~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~ 154 (683)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++ .+..+..|. ..|.+++|++ +++
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~--------------~~V~~v~~~~~~~~~ 72 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHE--------------GPVWQVAWAHPMYGN 72 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCS--------------SCEEEEEECCGGGSS
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCC--------------ccEEEEEeCCCCCCC
Confidence 3467999999999999999999999999999999998764 334444454 7899999986 489
Q ss_pred EEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCC--CCeEEEEecCCceEEEEEEccCCCc---eeeeecCC
Q psy15995 155 YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD--NQRMVVVGEGRERFGHVFMSETGTS---VGEISGQS 229 (683)
Q Consensus 155 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 229 (683)
+|++++.|++|++||+.+++......+..|...|.+++|+|+ +.++++++.++. +.+|+...+.. ...+.+|.
T Consensus 73 ~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~--i~lwd~~~~~~~~~~~~~~~h~ 150 (316)
T 3bg1_A 73 ILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA--ISLLTYTGEGQWEVKKINNAHT 150 (316)
T ss_dssp CEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC--EEEEEECSSSCEEECCBTTSSS
T ss_pred EEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC--EEEEecCCCCCcceeeeecccc
Confidence 999999999999999998754444556778899999999998 778888877654 78888876532 45567899
Q ss_pred cCeEEEEeecCC-----------------CeEEEEeeCCCeEEEEcCCCC---ceeeeccccccCeEEEEECCCC----C
Q psy15995 230 KPINSCDFKPSR-----------------PFRIITGSEDNTIAVFEGPPF---KFKMTKQEHSRFVQAVRYSPSG----S 285 (683)
Q Consensus 230 ~~v~~~~~~~~~-----------------~~~l~~~~~d~~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~----~ 285 (683)
..|.+++|+|+. . .|++++.|++|++||.+.. +....+.+|...|.+++|+|++ +
T Consensus 151 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~ 229 (316)
T 3bg1_A 151 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIK-RFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS 229 (316)
T ss_dssp SCBCCCEECCCCCC------CCSCCCCCCC-BEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCC
T ss_pred CCcceEEEccccCCccccccccccCccccc-eEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCc
Confidence 999999999973 3 5999999999999998754 4667788999999999999986 7
Q ss_pred EEEEEcCCCcEEEEeCCCC---e-eEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCC
Q psy15995 286 HFASAGFDGKVFLYDGASA---D-LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK 348 (683)
Q Consensus 286 ~l~~~~~dg~i~iw~~~~~---~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 348 (683)
+|++++.|++|++|++.+. + ....+. .|...|.+++|+|++++|++++.|+.|++|+....
T Consensus 230 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~--~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 230 TIASCSQDGRVFIWTCDDASSNTWSPKLLH--KFNDVVWHVSWSITANILAVSGGDNKVTLWKESVD 294 (316)
T ss_dssp EEEEEETTCEEEEEECSSTTCCCCBCCEEE--ECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred eEEEEcCCCeEEEEEccCccccchhhhhhh--cCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence 9999999999999998763 1 112222 27889999999999999999999999999997643
No 96
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-34 Score=284.87 Aligned_cols=262 Identities=19% Similarity=0.273 Sum_probs=219.5
Q ss_pred CcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCC--CcccccccccccCCCCcccceeeeeecceeeeEeecc
Q psy15995 75 PAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV--NKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSI 152 (683)
Q Consensus 75 ~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 152 (683)
|+++..+.+|.+.|++++|+|++++||+++.||.|+|||+. +++.+..+..|. ..|.+++|+++
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~--------------~~v~~~~~~~~ 66 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHE--------------GPVWRVDWAHP 66 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCS--------------SCEEEEEECCG
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCC--------------CcEEEEEeCCC
Confidence 35667889999999999999999999999999999999998 455555555554 78999999987
Q ss_pred --ceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCC--CCeEEEEecCCceEEEEEEccCCC--ceeeee
Q psy15995 153 --GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD--NQRMVVVGEGRERFGHVFMSETGT--SVGEIS 226 (683)
Q Consensus 153 --~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~ 226 (683)
+++|++++.||.|++||+.+++......+..|...|.+++|+|+ ++++++++.++. +.+|+...+. ....+.
T Consensus 67 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~--i~v~d~~~~~~~~~~~~~ 144 (379)
T 3jrp_A 67 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK--VSVVEFKENGTTSPIIID 144 (379)
T ss_dssp GGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSE--EEEEECCTTSCCCEEEEE
T ss_pred CCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCc--EEEEecCCCCceeeEEec
Confidence 89999999999999999999875555666678899999999999 899999887754 7888888763 445678
Q ss_pred cCCcCeEEEEeec-------------CCCeEEEEeeCCCeEEEEcCCCCc----eeeeccccccCeEEEEECCC---CCE
Q psy15995 227 GQSKPINSCDFKP-------------SRPFRIITGSEDNTIAVFEGPPFK----FKMTKQEHSRFVQAVRYSPS---GSH 286 (683)
Q Consensus 227 ~~~~~v~~~~~~~-------------~~~~~l~~~~~d~~i~iw~~~~~~----~~~~~~~~~~~v~~~~~~~~---~~~ 286 (683)
.|...|.+++|+| ++. .+++++.|+.|++||+++.+ ....+.+|...|.+++|+|+ +++
T Consensus 145 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~ 223 (379)
T 3jrp_A 145 AHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 223 (379)
T ss_dssp CCTTCEEEEEECCCC----------CTTC-EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEE
T ss_pred CCCCceEEEEEcCccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCe
Confidence 8999999999999 466 59999999999999987654 44677789999999999999 899
Q ss_pred EEEEcCCCcEEEEeCCCCe---eEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeE
Q psy15995 287 FASAGFDGKVFLYDGASAD---LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSE 353 (683)
Q Consensus 287 l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 353 (683)
|++++.||.|++||+.++. .........|...|.+++|+|++++|++++.||.|++|++........
T Consensus 224 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~ 293 (379)
T 3jrp_A 224 LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEP 293 (379)
T ss_dssp EEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEEE
T ss_pred EEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcccc
Confidence 9999999999999998864 333333344888999999999999999999999999999986554433
No 97
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=289.61 Aligned_cols=299 Identities=11% Similarity=0.155 Sum_probs=232.6
Q ss_pred ccCCCeEEEeeCCCCCeEEEe-cCCeEEEEeCCCCc-----------ccccccCcc------------cceEEEEECCCC
Q psy15995 42 TQRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPA-----------ISDIYTEHS------------CAVNVAKYSPSG 97 (683)
Q Consensus 42 ~~~~~~~~~~~s~~~~~l~~~-~~~~i~v~~~~~~~-----------~~~~~~~h~------------~~v~~~~~s~d~ 97 (683)
.+.+.+.+++|||+|++||++ .++.|+|||+.+++ ....+.+|. +.|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 346789999999999999998 58999999999877 467788998 889999999998
Q ss_pred --cEEEEecCCCCEEEEeCCCcccccc-cccccCCC------Cccc-------------------ceeeeeecceeeeEe
Q psy15995 98 --FYIASGDISGKVRIWDTVNKEHILK-NEFHPIGG------PIKD-------------------IGTLLSLTSIRNILV 149 (683)
Q Consensus 98 --~~las~~~dg~i~iwd~~~~~~~~~-~~~~~~~~------~~~~-------------------~~~~~~~~~i~~~~~ 149 (683)
.+|++++.|+.|++||+.++..... +......+ .+.. .....+...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 8999999999999999987543211 00000000 0000 001124477999999
Q ss_pred eccceEEEeecCCccEEEEeccccceeee-c-----cccccCCCeeEEEEcCCC-CeEEEEecCCceEEEEEEccCCCc-
Q psy15995 150 LSIGFYIASGDISGKVRIWDTVNKEHILK-N-----EFHPIGGPIKDIAWSPDN-QRMVVVGEGRERFGHVFMSETGTS- 221 (683)
Q Consensus 150 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~-----~~~~~~~~i~~~~~s~~~-~~l~~~~~~~~~~~~~~~~~~~~~- 221 (683)
+|++++|+++ .|+.|++||+.+...... . .+..|...|.+++|+|++ +++++++.++. +.+|+..+++.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~--i~iwd~~~~~~~ 262 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT--IRLCDMRASALC 262 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC--EEEEETTTCSSS
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe--EEEEECcCCccc
Confidence 9999999999 799999999995433222 1 466788999999999998 88888887754 78999998876
Q ss_pred ---eeeeecCCc------------CeEEEEeecCCCeEEEEeeCCCeEEEEcCCC-CceeeeccccccC-----------
Q psy15995 222 ---VGEISGQSK------------PINSCDFKPSRPFRIITGSEDNTIAVFEGPP-FKFKMTKQEHSRF----------- 274 (683)
Q Consensus 222 ---~~~~~~~~~------------~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~-~~~~~~~~~~~~~----------- 274 (683)
...+..|.. .|.+++|+|++++ |++++. +.|++||++. ++.+..+..|...
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY-MMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEND 340 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSE-EEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTS
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCCE-EEEeeC-CeEEEEeCCCCccccceeecccccccccccccccc
Confidence 778888876 9999999999996 888888 9999999987 8888888877642
Q ss_pred ----eEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccC------------------------------CccccCeE
Q psy15995 275 ----VQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGN------------------------------PAHKGGVY 320 (683)
Q Consensus 275 ----v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~------------------------------~~~~~~i~ 320 (683)
+..++|+|++++|++++.||.|++||+.+++.+..... ......|.
T Consensus 341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 420 (447)
T 3dw8_B 341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKIL 420 (447)
T ss_dssp GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCC
T ss_pred ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCcee
Confidence 23499999999999999999999999998877542110 01346789
Q ss_pred EEEEccCCCEEEEEECCCcEEEEECC
Q psy15995 321 AVAWKPDGTQLLTASGDKTCKLWDIE 346 (683)
Q Consensus 321 ~~~~~~~~~~l~~~~~dg~i~iwd~~ 346 (683)
.++|+|+++.|++++.++ +.+|..+
T Consensus 421 ~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 421 HTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp EEEECSSSSEEEEECSSC-EEEEECC
T ss_pred EEEECCCCCEEEEEecce-eeeeccc
Confidence 999999999999988765 8888654
No 98
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=4.5e-34 Score=279.88 Aligned_cols=298 Identities=16% Similarity=0.251 Sum_probs=240.5
Q ss_pred EcCCCCceeeeccccccCeEEEEECCC---CCEEEEEcCCCcEEEEeCCC-CeeE-EeccCCccccCeEEEEEccCCCEE
Q psy15995 257 FEGPPFKFKMTKQEHSRFVQAVRYSPS---GSHFASAGFDGKVFLYDGAS-ADLV-SELGNPAHKGGVYAVAWKPDGTQL 331 (683)
Q Consensus 257 w~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iw~~~~-~~~~-~~~~~~~~~~~i~~~~~~~~~~~l 331 (683)
++....+....+.+|...|.+++|+|+ |++|++++.||.|++||+.+ +..+ ..+. .|...|.+++|+|++++|
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l 101 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ--MHTGPVLDVCWSDDGSKV 101 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE--ECSSCEEEEEECTTSSEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec--cccCCEEEEEECcCCCEE
Confidence 456677778888999999999999999 59999999999999999987 5444 4554 399999999999999999
Q ss_pred EEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEE-
Q psy15995 332 LTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALAL- 410 (683)
Q Consensus 332 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~- 410 (683)
++++.||.|++||+++++... +..|...|.+++|
T Consensus 102 ~s~~~dg~v~iwd~~~~~~~~---------------------------------------------~~~~~~~v~~~~~~ 136 (368)
T 3mmy_A 102 FTASCDKTAKMWDLSSNQAIQ---------------------------------------------IAQHDAPVKTIHWI 136 (368)
T ss_dssp EEEETTSEEEEEETTTTEEEE---------------------------------------------EEECSSCEEEEEEE
T ss_pred EEEcCCCcEEEEEcCCCCcee---------------------------------------------eccccCceEEEEEE
Confidence 999999999999999876432 2358899999999
Q ss_pred -eCCCCEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCc
Q psy15995 411 -SPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPR 489 (683)
Q Consensus 411 -~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~ 489 (683)
+|+++++++++.||.|++||+++++...... ....+.++.+....+++++.++.+++|++........
T Consensus 137 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--------- 205 (368)
T 3mmy_A 137 KAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ--LPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFR--------- 205 (368)
T ss_dssp ECSSCEEEEEEETTSEEEEECSSCSSCSEEEE--CSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEE---------
T ss_pred eCCCCCEEEEccCCCcEEEEECCCCcEEEEEe--cCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhh---------
Confidence 8999999999999999999999988777664 3347778888899999999999999999986532110
Q ss_pred eeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCE----EEEEcCCCcEEEEEcCCCcc-Cc-ceeecC
Q psy15995 490 GLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGL----VAVGGADSKVHIYELNNKSL-SP-KAELDH 563 (683)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~dg~i~i~d~~~~~~-~~-~~~~~~ 563 (683)
....+......++++.++... +++++.||.|++|++..... .. .....|
T Consensus 206 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 260 (368)
T 3mmy_A 206 -------------------------RIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCH 260 (368)
T ss_dssp -------------------------ECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECS
T ss_pred -------------------------hccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeee
Confidence 011112334456666665544 99999999999999988743 11 112234
Q ss_pred Cc------------CeeEEEECCCCCEEEEEeCCCeEEEEECCCCccccccceeeecccEEEEEecCCCCeEEEeecCCc
Q psy15995 564 LG------------PVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTT 631 (683)
Q Consensus 564 ~~------------~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~ 631 (683)
.. +|++++|+|++++|++++.||.|++||+.+++.+.... +|...|++++|+||+++|++++.|+.
T Consensus 261 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~s~d~~ 338 (368)
T 3mmy_A 261 RSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE--QLDQPISACCFNHNGNIFAYASSYDW 338 (368)
T ss_dssp EEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC--CCSSCEEEEEECTTSSCEEEEECCCS
T ss_pred ecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec--CCCCCceEEEECCCCCeEEEEecccc
Confidence 43 79999999999999999999999999999988875544 38999999999999999999999986
Q ss_pred EEEEeCCC
Q psy15995 632 IIIWSLAS 639 (683)
Q Consensus 632 v~iw~~~~ 639 (683)
.+.|++.+
T Consensus 339 ~~~~~~~~ 346 (368)
T 3mmy_A 339 SKGHEFYN 346 (368)
T ss_dssp TTCGGGCC
T ss_pred cccccccC
Confidence 66665543
No 99
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.1e-34 Score=275.51 Aligned_cols=270 Identities=19% Similarity=0.287 Sum_probs=200.8
Q ss_pred eccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCee--EEeccCCccccCeEEEEEcc--CCCEEEEEECCCcEEE
Q psy15995 267 TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADL--VSELGNPAHKGGVYAVAWKP--DGTQLLTASGDKTCKL 342 (683)
Q Consensus 267 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i 342 (683)
.+.+|...|.+++|+|+|++|++++.|++|++||+.++.. +..+. +|...|.+++|++ ++++|++++.|++|++
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~--gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLR--GHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEE--CCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEc--CCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 4568999999999999999999999999999999988753 45554 4999999999986 4899999999999999
Q ss_pred EECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCC--CCEEEEE
Q psy15995 343 WDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPD--RGTVFTG 420 (683)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~ 420 (683)
||+++++.. ....+.+|...|.+++|+|+ +.+|+++
T Consensus 86 Wd~~~~~~~------------------------------------------~~~~~~~h~~~V~~v~~~p~~~g~~lasg 123 (316)
T 3bg1_A 86 WREENGTWE------------------------------------------KSHEHAGHDSSVNSVCWAPHDYGLILACG 123 (316)
T ss_dssp ECCSSSCCC------------------------------------------EEEEECCCSSCCCEEEECCTTTCSCEEEE
T ss_pred EECCCCcce------------------------------------------EEEEccCCCCceEEEEECCCCCCcEEEEE
Confidence 999875321 11234678999999999998 7899999
Q ss_pred eCCCcEEEEcCCCCCcc--eeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeE
Q psy15995 421 SHDGFITRWNAKTGEND--RVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTL 498 (683)
Q Consensus 421 ~~dg~i~~w~~~~~~~~--~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (683)
+.|+.|++||+..+... ......|...+.++.+..+... +.+ .+....
T Consensus 124 s~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-----~~~--~~~~~~----------------------- 173 (316)
T 3bg1_A 124 SSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP-----GSL--IDHPSG----------------------- 173 (316)
T ss_dssp CSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-------------CCS-----------------------
T ss_pred cCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC-----ccc--cccccc-----------------------
Confidence 99999999999876422 2233557777776666532110 000 000000
Q ss_pred EEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCcc--CcceeecCCcCeeEEEECCCC
Q psy15995 499 VTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL--SPKAELDHLGPVTDCSFSPSN 576 (683)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~s~~~ 576 (683)
...+++++|++|+.|+.|++||+..... ......+|...|.+++|+|++
T Consensus 174 -----------------------------~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~ 224 (316)
T 3bg1_A 174 -----------------------------QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSI 224 (316)
T ss_dssp -----------------------------CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCS
T ss_pred -----------------------------cCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCC
Confidence 0012357899999999999999975421 112234689999999999986
Q ss_pred ----CEEEEEeCCCeEEEEECCCCcc--ccccceeeecccEEEEEecCCCCeEEEeecCCcEEEEeCCC
Q psy15995 577 ----EYLVASDAHRKVVLYRVPDFEL--AHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLAS 639 (683)
Q Consensus 577 ----~~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~ 639 (683)
++|++++.|++|++|++.+... ........|...|.+++|+|++++||+++.|++|++|+...
T Consensus 225 ~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 225 GLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp SCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred CCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 8999999999999999986321 11122344889999999999999999999999999999763
No 100
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=8.9e-34 Score=274.43 Aligned_cols=283 Identities=15% Similarity=0.160 Sum_probs=235.4
Q ss_pred eeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCe---eEEeccCCccccCeEEEEEccCCC-EEEEEECCCcEE
Q psy15995 266 MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD---LVSELGNPAHKGGVYAVAWKPDGT-QLLTASGDKTCK 341 (683)
Q Consensus 266 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~ 341 (683)
....+|...|.+++|+|++++|++++.||.|++|++.+++ ....+. .|...|.+++|+|+++ +|++++.||.|+
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee--ecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 3445799999999999999999999999999999998876 223332 3899999999999999 999999999999
Q ss_pred EEEC-CCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeee--ccccEEEEEEeCCCCEEE
Q psy15995 342 LWDI-ETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKG--HNKPITALALSPDRGTVF 418 (683)
Q Consensus 342 iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~ 418 (683)
+||+ .+++. ..+.+ |...|.+++|+| ++.++
T Consensus 83 ~wd~~~~~~~---------------------------------------------~~~~~~~~~~~v~~l~~~~-~~~l~ 116 (342)
T 1yfq_A 83 KVDLIGSPSF---------------------------------------------QALTNNEANLGICRICKYG-DDKLI 116 (342)
T ss_dssp EECSSSSSSE---------------------------------------------EECBSCCCCSCEEEEEEET-TTEEE
T ss_pred EEEeccCCce---------------------------------------------EeccccCCCCceEEEEeCC-CCEEE
Confidence 9999 76643 22345 889999999999 99999
Q ss_pred EEeCCCcEEEEcCCC---------CCcceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCC-CcccCCceecCCCC
Q psy15995 419 TGSHDGFITRWNAKT---------GENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSS-NAYSGPEVKLGSQP 488 (683)
Q Consensus 419 ~~~~dg~i~~w~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~-~~~~~~~~~~~~~~ 488 (683)
+++.|+.|++||+++ ++...... +...+.++.+.++.+++++.|+.|++||+.. ....
T Consensus 117 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---------- 184 (342)
T 1yfq_A 117 AASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN---------- 184 (342)
T ss_dssp EEETTSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCC----------
T ss_pred EEcCCCeEEEEcccccccccccccCCeeeEEe--eCCceEEEEecCCcEEEEeCCCeEEEEECCcccccc----------
Confidence 999999999999987 66555543 8889999999988899999999999999987 3210
Q ss_pred ceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEcc-CCCEEEEEcCCCcEEEEEcCCC------ccCcceee
Q psy15995 489 RGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDH-EHGLVAVGGADSKVHIYELNNK------SLSPKAEL 561 (683)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~ 561 (683)
.......+...+.+++++| +++++++++.||.|++|+++.. +.. ....
T Consensus 185 ------------------------~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-~~~~ 239 (342)
T 1yfq_A 185 ------------------------GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR-FAFR 239 (342)
T ss_dssp ------------------------CEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC-EEEE
T ss_pred ------------------------ceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc-eeee
Confidence 1112233556789999999 9999999999999999999876 333 2222
Q ss_pred cCC---------cCeeEEEECCCCCEEEEEeCCCeEEEEECCCCccccccceeee-cccEEEEEecCCCCeEEEeecCCc
Q psy15995 562 DHL---------GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFH-SAKVNCVAWSPDSALVASGSLDTT 631 (683)
Q Consensus 562 ~~~---------~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~l~~~~~d~~ 631 (683)
.|. ..|.+++|+|++++|++++.||.|++||+.+++.+.... +| ...|++++ |++++|++++.||.
T Consensus 240 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA--KFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC--CCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred cccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh--cccCCCceEec--CCCCeEEEEecCCc
Confidence 343 399999999999999999999999999999998875543 36 99999999 99999999999998
Q ss_pred -EEEEeC
Q psy15995 632 -IIIWSL 637 (683)
Q Consensus 632 -v~iw~~ 637 (683)
.+.|..
T Consensus 316 ~~~~~~~ 322 (342)
T 1yfq_A 316 FKTNAAI 322 (342)
T ss_dssp HHHCSSS
T ss_pred ccccccc
Confidence 666664
No 101
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.9e-34 Score=276.23 Aligned_cols=280 Identities=14% Similarity=0.137 Sum_probs=234.3
Q ss_pred ccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCccc---ccccccccCCCCcccceeeeeecceeeeEeeccce-
Q psy15995 79 DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH---ILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGF- 154 (683)
Q Consensus 79 ~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~- 154 (683)
....+|.+.|++++|+|++++|++++.||.|++||+.+++. ......+ ...+.+++|+|+++
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~ 70 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRY--------------KHPLLCCNFIDNTDL 70 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEEC--------------SSCEEEEEEEESSSE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeec--------------CCceEEEEECCCCCc
Confidence 34568999999999999999999999999999999987751 2222222 27899999999999
Q ss_pred EEEeecCCccEEEEec-cccceeeeccccc--cCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccC---------CCce
Q psy15995 155 YIASGDISGKVRIWDT-VNKEHILKNEFHP--IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSET---------GTSV 222 (683)
Q Consensus 155 ~l~~~~~d~~i~iwd~-~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~---------~~~~ 222 (683)
+|++++.||.|++||+ .+++. ..+.. |...|.+++|+| ++.+++++.++. +.+|+..+ ++.+
T Consensus 71 ~l~~~~~dg~i~~wd~~~~~~~---~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 71 QIYVGTVQGEILKVDLIGSPSF---QALTNNEANLGICRICKYG-DDKLIAASWDGL--IEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp EEEEEETTSCEEEECSSSSSSE---EECBSCCCCSCEEEEEEET-TTEEEEEETTSE--EEEECHHHHTTBCEEEEESCS
T ss_pred EEEEEcCCCeEEEEEeccCCce---EeccccCCCCceEEEEeCC-CCEEEEEcCCCe--EEEEcccccccccccccCCee
Confidence 9999999999999999 87754 34455 889999999999 999998887654 78888887 7777
Q ss_pred eeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCC-Cc--eeeeccccccCeEEEEECC-CCCEEEEEcCCCcEEE
Q psy15995 223 GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP-FK--FKMTKQEHSRFVQAVRYSP-SGSHFASAGFDGKVFL 298 (683)
Q Consensus 223 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~-~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i 298 (683)
..+. |...|.+++|+|++ +++++.|+.|++||+++ +. .......|...+.+++|+| +++++++++.||.|++
T Consensus 145 ~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i 220 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAV 220 (342)
T ss_dssp SSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEE
T ss_pred eEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEE
Confidence 7776 89999999999886 99999999999999988 44 3344556888999999999 9999999999999999
Q ss_pred EeCCCC------eeEEeccCCccc---------cCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceec
Q psy15995 299 YDGASA------DLVSELGNPAHK---------GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQ 363 (683)
Q Consensus 299 w~~~~~------~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (683)
|+++.. +....+.. |. ..|.+++|+|++++|++++.||.|++||+.+++.+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~---------- 288 (342)
T 1yfq_A 221 EFFDDQGDDYNSSKRFAFRC--HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN---------- 288 (342)
T ss_dssp EECCTTCCSTTCTTCEEEEC--CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE----------
T ss_pred EEEcCCCcccccccceeeec--ccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhh----------
Confidence 999876 66666654 43 4999999999999999999999999999998766433
Q ss_pred eEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeec-cccEEEEEEeCCCCEEEEEeCCCc-EEEEc
Q psy15995 364 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGH-NKPITALALSPDRGTVFTGSHDGF-ITRWN 430 (683)
Q Consensus 364 ~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~-i~~w~ 430 (683)
+..| ..+|.+++ |++++|++++.||. .+.+.
T Consensus 289 ----------------------------------~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 289 ----------------------------------FAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp ----------------------------------CCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred ----------------------------------hhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 3456 78888888 89999999999997 55554
No 102
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=8.6e-34 Score=285.60 Aligned_cols=305 Identities=16% Similarity=0.219 Sum_probs=229.6
Q ss_pred cCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCc-----------eeeeccccc------------cCeEEEEECCC
Q psy15995 227 GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK-----------FKMTKQEHS------------RFVQAVRYSPS 283 (683)
Q Consensus 227 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~ 283 (683)
.+.+.|++++|+|++++ |++|+.||.|++|+..+++ ....+.+|. ..|.+++|+|+
T Consensus 26 ~~~~~V~~v~~s~~g~~-la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHSGEL-LATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGGGSEEEEEECSSSSE-EEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cccCcEEEEEECCCCCE-EEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 46789999999999995 9999999999999988776 477788898 88999999999
Q ss_pred C--CEEEEEcCCCcEEEEeCCCCeeEEe--------------------------------------ccCCccccCeEEEE
Q psy15995 284 G--SHFASAGFDGKVFLYDGASADLVSE--------------------------------------LGNPAHKGGVYAVA 323 (683)
Q Consensus 284 ~--~~l~~~~~dg~i~iw~~~~~~~~~~--------------------------------------~~~~~~~~~i~~~~ 323 (683)
+ ..|++++.|+.|++||+.+++.... .....|...|.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 8 7999999999999999876544211 11134899999999
Q ss_pred EccCCCEEEEEECCCcEEEEECCCCc-eeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeecc
Q psy15995 324 WKPDGTQLLTASGDKTCKLWDIETKS-VVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHN 402 (683)
Q Consensus 324 ~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 402 (683)
|+|++++|+++ .|+.|++||++... ....+ +.. ...+.+|.
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~--------------------------------~~~-----~~~~~~~~ 226 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDRSFNIV--------------------------------DIK-----PANMEELT 226 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEE--------------------------------ECC-----CSSGGGCC
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCceeeee--------------------------------ecc-----cccccccC
Confidence 99999999998 79999999998432 22211 111 12356789
Q ss_pred ccEEEEEEeCCC-CEEEEEeCCCcEEEEcCCCCCcc----eeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcc
Q psy15995 403 KPITALALSPDR-GTVFTGSHDGFITRWNAKTGEND----RVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAY 477 (683)
Q Consensus 403 ~~v~~~~~~~~~-~~l~~~~~dg~i~~w~~~~~~~~----~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~ 477 (683)
..|.+++|+|++ ++|++++.||.|++||+++++.. ..+ ..|....
T Consensus 227 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~----------------------------- 276 (447)
T 3dw8_B 227 EVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLF-EEPEDPS----------------------------- 276 (447)
T ss_dssp CCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEE-CCC---------------------------------
T ss_pred cceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEe-ccCCCcc-----------------------------
Confidence 999999999998 99999999999999999887642 222 1111000
Q ss_pred cCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCC-CccC
Q psy15995 478 SGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNN-KSLS 556 (683)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~ 556 (683)
.......+...+.+++++|++++|++++. +.|++||+.. ++..
T Consensus 277 -----------------------------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~ 320 (447)
T 3dw8_B 277 -----------------------------------NRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPV 320 (447)
T ss_dssp ------------------------------------CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCS
T ss_pred -----------------------------------ccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccc
Confidence 00000012236789999999999999999 9999999987 5554
Q ss_pred cceeecCCcC---------------eeEEEECCCCCEEEEEeCCCeEEEEECCCCccccccc------------------
Q psy15995 557 PKAELDHLGP---------------VTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKE------------------ 603 (683)
Q Consensus 557 ~~~~~~~~~~---------------v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~------------------ 603 (683)
.... .|... +..++|+|++++|++++.||.|++||+.+++......
T Consensus 321 ~~~~-~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (447)
T 3dw8_B 321 ETYQ-VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCA 399 (447)
T ss_dssp CCEE-SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEEC
T ss_pred ceee-ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccc
Confidence 3333 34321 3349999999999999999999999999877642110
Q ss_pred ------------eeeecccEEEEEecCCCCeEEEeecCCcEEEEeCC
Q psy15995 604 ------------WGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLA 638 (683)
Q Consensus 604 ------------~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~ 638 (683)
...+...|.+++|+|++++||+++.++ +++|.-+
T Consensus 400 ~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 400 SGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp SSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred cCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 001346789999999999999998876 8888643
No 103
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5.8e-34 Score=281.52 Aligned_cols=291 Identities=17% Similarity=0.192 Sum_probs=233.2
Q ss_pred eEEEEeecCCCeEEEEeeCCCeEEEEcCCCCc----eeeeccccccCeEEEEECC-CCCEEEEEcCCCcEEEEeCCCC--
Q psy15995 232 INSCDFKPSRPFRIITGSEDNTIAVFEGPPFK----FKMTKQEHSRFVQAVRYSP-SGSHFASAGFDGKVFLYDGASA-- 304 (683)
Q Consensus 232 v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~-- 304 (683)
...++++|+...++++++.||.|++|++.... ....+.+|...|.+++|+| ++++|++++.||.|++||+.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 44678888876556668999999999986542 3445778999999999999 8999999999999999999987
Q ss_pred -----eeEEeccCCccccCeEEEEEccCC-CEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEe
Q psy15995 305 -----DLVSELGNPAHKGGVYAVAWKPDG-TQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVS 378 (683)
Q Consensus 305 -----~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 378 (683)
+.+..+.. |...|.+++|+|++ ++|++++.|+.|++||+++++.+..+.
T Consensus 117 ~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------------------- 171 (402)
T 2aq5_A 117 VLPLREPVITLEG--HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG----------------------- 171 (402)
T ss_dssp SSCBCSCSEEEEC--CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC-----------------------
T ss_pred ccccCCceEEecC--CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe-----------------------
Confidence 45556654 99999999999998 699999999999999999876543320
Q ss_pred cCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEeCCeE
Q psy15995 379 LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATGELL 458 (683)
Q Consensus 379 ~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 458 (683)
...|...|.+++|+|++++|++++.||.|++||+++++........|..
T Consensus 172 -------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------------ 220 (402)
T 2aq5_A 172 -------------------PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEG------------ 220 (402)
T ss_dssp -------------------TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCS------------
T ss_pred -------------------cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCC------------
Confidence 0458889999999999999999999999999999877654443111211
Q ss_pred EEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEE
Q psy15995 459 YTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAV 538 (683)
Q Consensus 459 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 538 (683)
..+.+++++|++++|++
T Consensus 221 ---------------------------------------------------------------~~~~~~~~~~~~~~l~~ 237 (402)
T 2aq5_A 221 ---------------------------------------------------------------TRPVHAVFVSEGKILTT 237 (402)
T ss_dssp ---------------------------------------------------------------SSCCEEEECSTTEEEEE
T ss_pred ---------------------------------------------------------------CcceEEEEcCCCcEEEE
Confidence 13578899999999999
Q ss_pred E---cCCCcEEEEEcCCCcc-CcceeecCCcCeeEEEECCCCCEEEE-EeCCCeEEEEECCCCcc-ccccceeeecccEE
Q psy15995 539 G---GADSKVHIYELNNKSL-SPKAELDHLGPVTDCSFSPSNEYLVA-SDAHRKVVLYRVPDFEL-AHNKEWGFHSAKVN 612 (683)
Q Consensus 539 ~---~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~~i~i~~~~~~~~-~~~~~~~~h~~~v~ 612 (683)
| +.|+.|++||+.+... .......+...+.+++|+|++++|++ ++.|+.|++||+.+++. ........|...|.
T Consensus 238 g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~ 317 (402)
T 2aq5_A 238 GFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQR 317 (402)
T ss_dssp EECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCS
T ss_pred eccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCccc
Confidence 9 7999999999988765 33344467888999999999999975 55799999999998874 22222211568999
Q ss_pred EEEecCCCCeEEEeecCCcEEEEeCCCCcee
Q psy15995 613 CVAWSPDSALVASGSLDTTIIIWSLASPAKH 643 (683)
Q Consensus 613 ~~~~s~d~~~l~~~~~d~~v~iw~~~~~~~~ 643 (683)
+++|+|++.++++ .|+.+++|++.++...
T Consensus 318 ~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 318 GMGYMPKRGLEVN--KCEIARFYKLHERKCE 346 (402)
T ss_dssp EEEECCGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred ceEEeccccccee--cceeEEEEEcCCCcEE
Confidence 9999999998875 4669999999886543
No 104
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.3e-33 Score=281.88 Aligned_cols=276 Identities=19% Similarity=0.325 Sum_probs=234.5
Q ss_pred CCeEEEeeCCCCCeEEEe-cCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCccccccc
Q psy15995 45 GQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN 123 (683)
Q Consensus 45 ~~~~~~~~s~~~~~l~~~-~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~ 123 (683)
..+.+++ +++++|+++ .++.|++||+.+++....+.+|...|.+++| ++++|++|+.||.|++||+.+++.+..+
T Consensus 134 ~~v~~~~--~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 209 (435)
T 1p22_A 134 KGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTL 209 (435)
T ss_dssp CCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEE
T ss_pred CcEEEEE--ECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence 3456654 489999887 6889999999999999999999999999998 7889999999999999999999888777
Q ss_pred ccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceee-eccccccCCCeeEEEEcCCCCeEEE
Q psy15995 124 EFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHIL-KNEFHPIGGPIKDIAWSPDNQRMVV 202 (683)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~ 202 (683)
..|. ..+.+++|++ .++++++.||.|++||+.+++... ...+..|...|.+++| +++++++
T Consensus 210 ~~h~--------------~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s 271 (435)
T 1p22_A 210 IHHC--------------EAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVS 271 (435)
T ss_dssp CCCC--------------SCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEE
T ss_pred cCCC--------------CcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEE
Confidence 6664 6788888864 599999999999999999876542 2445677899999999 7889998
Q ss_pred EecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECC
Q psy15995 203 VGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSP 282 (683)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~ 282 (683)
++.++. +.+|+.++++.+..+.+|...|.++.+++ . .+++++.||.|++||+++++.+..+.+|...|.+++|
T Consensus 272 ~~~dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~-- 344 (435)
T 1p22_A 272 ASGDRT--IKVWNTSTCEFVRTLNGHKRGIACLQYRD--R-LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-- 344 (435)
T ss_dssp EETTSE--EEEEETTTCCEEEEEECCSSCEEEEEEET--T-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--
T ss_pred EeCCCe--EEEEECCcCcEEEEEcCCCCcEEEEEeCC--C-EEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--
Confidence 887654 78999999999999999999999999954 4 5999999999999999999999999999999999999
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCe---------eEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeE
Q psy15995 283 SGSHFASAGFDGKVFLYDGASAD---------LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSE 353 (683)
Q Consensus 283 ~~~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 353 (683)
++++|++|+.||.|++||+.++. .+..+.. |.+.|.+++| ++++|++++.||.|++||+.+......
T Consensus 345 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~ 420 (435)
T 1p22_A 345 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE--HSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQA 420 (435)
T ss_dssp CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC--CSSCCCCEEE--CSSCEEECCSSSEEEEEC---------
T ss_pred cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccC--CCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCccc
Confidence 78899999999999999987765 6677754 9999999999 688999999999999999988765443
No 105
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3e-33 Score=279.29 Aligned_cols=289 Identities=21% Similarity=0.293 Sum_probs=237.6
Q ss_pred ccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeec
Q psy15995 81 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGD 160 (683)
Q Consensus 81 ~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 160 (683)
..+|...|.++++ ++++|++|+.||.|++||+.+++.+..+..|. ..|.++++ ++++|++|+
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~--------------~~v~~l~~--~~~~l~sg~ 190 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHT--------------GSVLCLQY--DERVIITGS 190 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCS--------------SCEEEEEC--CSSEEEEEE
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCC--------------CcEEEEEE--CCCEEEEEc
Confidence 3467788999886 89999999999999999999998888777665 67888887 889999999
Q ss_pred CCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCce---eeeecCCcCeEEEEe
Q psy15995 161 ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSV---GEISGQSKPINSCDF 237 (683)
Q Consensus 161 ~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~ 237 (683)
.||.|++||+.+++.+. .+..|...|.+++|++ ..+++++.++. +.+|+..++... ..+.+|...|.+++|
T Consensus 191 ~dg~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~~--~~l~s~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 264 (435)
T 1p22_A 191 SDSTVRVWDVNTGEMLN--TLIHHCEAVLHLRFNN--GMMVTCSKDRS--IAVWDMASPTDITLRRVLVGHRAAVNVVDF 264 (435)
T ss_dssp TTSCEEEEESSSCCEEE--EECCCCSCEEEEECCT--TEEEEEETTSC--EEEEECSSSSCCEEEEEECCCSSCEEEEEE
T ss_pred CCCeEEEEECCCCcEEE--EEcCCCCcEEEEEEcC--CEEEEeeCCCc--EEEEeCCCCCCceeeeEecCCCCcEEEEEe
Confidence 99999999999988654 4556789999999975 47887776654 789999887765 678899999999999
Q ss_pred ecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCcccc
Q psy15995 238 KPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKG 317 (683)
Q Consensus 238 ~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 317 (683)
+++ .+++++.||.|++||+++++.+..+.+|...|.++.+ +++++++++.||.|++||+++++.+..+.. |..
T Consensus 265 --~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--h~~ 337 (435)
T 1p22_A 265 --DDK-YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEG--HEE 337 (435)
T ss_dssp --ETT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECC--CSS
T ss_pred --CCC-EEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeC--CcC
Confidence 445 5999999999999999999999999999999999999 467999999999999999999999998875 999
Q ss_pred CeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceee
Q psy15995 318 GVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRV 397 (683)
Q Consensus 318 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~ 397 (683)
.|.+++| ++++|++++.||.|++||+.++...... .....+..
T Consensus 338 ~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~-----------------------------------~~~~~~~~ 380 (435)
T 1p22_A 338 LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAP-----------------------------------AGTLCLRT 380 (435)
T ss_dssp CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSC-----------------------------------TTTTEEEE
T ss_pred cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCcccc-----------------------------------ccchheee
Confidence 9999999 6889999999999999998765421000 00113445
Q ss_pred eeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCccee
Q psy15995 398 IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRV 439 (683)
Q Consensus 398 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~ 439 (683)
+.+|...|.+++| ++.+|++++.||.|++||+.+......
T Consensus 381 ~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~ 420 (435)
T 1p22_A 381 LVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQA 420 (435)
T ss_dssp ECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC---------
T ss_pred ccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCccc
Confidence 6779999999999 778999999999999999988765443
No 106
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=4.9e-33 Score=268.47 Aligned_cols=292 Identities=15% Similarity=0.226 Sum_probs=216.7
Q ss_pred EEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeE
Q psy15995 69 IRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNIL 148 (683)
Q Consensus 69 v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 148 (683)
+|++.+.+.+..+.+|...|++++|+|||++||+|+.++ ++|||+.+++....... ..+..+.
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~----------------~~~~~~~ 65 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM----------------RHLSKVR 65 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC----------------SCCCEEE
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec----------------CCeEEEE
Confidence 567777777777889999999999999999999998875 88999988765543222 2356677
Q ss_pred eeccceEE-EeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCC-Cceeeee
Q psy15995 149 VLSIGFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG-TSVGEIS 226 (683)
Q Consensus 149 ~s~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~ 226 (683)
+.+++..+ ++++.|++|++||..+++.+.... +...|.+++|+++. ++++..+ .+.+|+..++ +.+..+.
T Consensus 66 ~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~---~~~~v~~v~~~~~~--~~~~~~~---~i~i~d~~~~~~~~~~~~ 137 (355)
T 3vu4_A 66 MLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK---VDAPVKDLFLSREF--IVVSYGD---VISVFKFGNPWKRITDDI 137 (355)
T ss_dssp ECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE---CSSCEEEEEECSSE--EEEEETT---EEEEEESSTTCCBSSCCE
T ss_pred EcCCCCEEEEEECCccEEEEEECCCCcEEEEEE---CCCceEEEEEcCCE--EEEEEcC---EEEEEECCCCceeeEEec
Confidence 88888777 567888999999999998776554 44789999999874 4444433 3789999887 7777666
Q ss_pred cCCcCeEEEEeecCCCeEEEE-eeCCCeEEEEcCCCCc----------------eeeeccccccCeEEEEECCCCCEEEE
Q psy15995 227 GQSKPINSCDFKPSRPFRIIT-GSEDNTIAVFEGPPFK----------------FKMTKQEHSRFVQAVRYSPSGSHFAS 289 (683)
Q Consensus 227 ~~~~~v~~~~~~~~~~~~l~~-~~~d~~i~iw~~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~l~~ 289 (683)
. +...+++++ .+++++ |+.||.|++||+.+++ ....+.+|...|.+++|+|++++|++
T Consensus 138 ~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s 212 (355)
T 3vu4_A 138 R---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVAT 212 (355)
T ss_dssp E---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEE
T ss_pred c---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEE
Confidence 5 455666777 432333 7899999999998765 26778899999999999999999999
Q ss_pred EcCCCc-EEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEE-------------
Q psy15995 290 AGFDGK-VFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFI------------- 355 (683)
Q Consensus 290 ~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------- 355 (683)
++.|++ |++||+++++.+..+....|...|.+++|+|++++|++++.|+.|++||++.+.......
T Consensus 213 ~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (355)
T 3vu4_A 213 CSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSE 292 (355)
T ss_dssp EETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCS
T ss_pred EeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccc
Confidence 999998 999999999999888632388999999999999999999999999999998654221111
Q ss_pred -------ec--CcceeceEEEEecCCEEEEEecCCcEEEEecCC
Q psy15995 356 -------MG--NQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNN 390 (683)
Q Consensus 356 -------~~--~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~ 390 (683)
.. .......+++.++++.+++++.+|.+++|++..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 293 WSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp SCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred cceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 00 111225577888999999999999999999865
No 107
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-33 Score=273.94 Aligned_cols=272 Identities=21% Similarity=0.297 Sum_probs=206.4
Q ss_pred CCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCC--CCceeeeccccccCeEEEEECCC--CCEEEEEcCCC
Q psy15995 219 GTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP--PFKFKMTKQEHSRFVQAVRYSPS--GSHFASAGFDG 294 (683)
Q Consensus 219 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg 294 (683)
|+.+..+.+|...|++++|+|++++ |++++.||.|++||+. +.+....+.+|...|.+++|+++ +++|++++.||
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred CCccEEecCCcccEEEEEEcCCCCE-EEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 3566788999999999999999995 9999999999999987 66777788999999999999987 89999999999
Q ss_pred cEEEEeCCCCe--eEEeccCCccccCeEEEEEccC--CCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEec
Q psy15995 295 KVFLYDGASAD--LVSELGNPAHKGGVYAVAWKPD--GTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQ 370 (683)
Q Consensus 295 ~i~iw~~~~~~--~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (683)
.|++||+.+++ ....+. .|...|.+++|+|+ +++|++++.|+.|++||+..+.....
T Consensus 80 ~v~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~----------------- 140 (379)
T 3jrp_A 80 KVLIWKEENGRWSQIAVHA--VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP----------------- 140 (379)
T ss_dssp CEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE-----------------
T ss_pred EEEEEEcCCCceeEeeeec--CCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee-----------------
Confidence 99999999987 455554 48999999999999 99999999999999999987643221
Q ss_pred CCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeE
Q psy15995 371 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQING 450 (683)
Q Consensus 371 ~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~ 450 (683)
..+..|...|.+++|+|........
T Consensus 141 -------------------------~~~~~~~~~v~~~~~~~~~~~~~~~------------------------------ 165 (379)
T 3jrp_A 141 -------------------------IIIDAHAIGVNSASWAPATIEEDGE------------------------------ 165 (379)
T ss_dssp -------------------------EEEECCTTCEEEEEECCCC------------------------------------
T ss_pred -------------------------EEecCCCCceEEEEEcCcccccccc------------------------------
Confidence 2345688899999999952110000
Q ss_pred EEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEc
Q psy15995 451 MKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLD 530 (683)
Q Consensus 451 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (683)
....
T Consensus 166 ----------------------------------------------------------------------------~~~~ 169 (379)
T 3jrp_A 166 ----------------------------------------------------------------------------HNGT 169 (379)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------------------------------------ccCC
Confidence 0001
Q ss_pred cCCCEEEEEcCCCcEEEEEcCCCccCc---ceeecCCcCeeEEEECCC---CCEEEEEeCCCeEEEEECCCCccc---cc
Q psy15995 531 HEHGLVAVGGADSKVHIYELNNKSLSP---KAELDHLGPVTDCSFSPS---NEYLVASDAHRKVVLYRVPDFELA---HN 601 (683)
Q Consensus 531 ~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i~i~~~~~~~~~---~~ 601 (683)
+++.++++++.||.|++||+.++.... .....|...|.+++|+|+ +++|++++.||.|++||+.++... ..
T Consensus 170 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 249 (379)
T 3jrp_A 170 KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTL 249 (379)
T ss_dssp CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEE
T ss_pred CCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeee
Confidence 233344444444444444443332110 112247888999999999 899999999999999999886421 11
Q ss_pred cceeeecccEEEEEecCCCCeEEEeecCCcEEEEeCCCCc
Q psy15995 602 KEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPA 641 (683)
Q Consensus 602 ~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~~ 641 (683)
.....|...|++++|+|++++|++++.||.|++|++....
T Consensus 250 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 250 LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp SSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred eccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 2222388899999999999999999999999999998543
No 108
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=5.8e-33 Score=270.09 Aligned_cols=259 Identities=17% Similarity=0.275 Sum_probs=218.2
Q ss_pred cccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcc----cccccccccCCCCcccceeeeeecceeeeEeec--
Q psy15995 78 SDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE----HILKNEFHPIGGPIKDIGTLLSLTSIRNILVLS-- 151 (683)
Q Consensus 78 ~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-- 151 (683)
...+.+|.+.|++++|+|++++||+++.||.|++||+.++. ....+..|. ..|.+++|+|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--------------~~v~~~~~~~~~ 69 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHD--------------SSIVAIDWASPE 69 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCS--------------SCEEEEEECCGG
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCC--------------CcEEEEEEcCCC
Confidence 45678999999999999999999999999999999998764 233333333 7899999999
Q ss_pred cceEEEeecCCccEEEEeccccce-------eeeccccccCCCeeEEEEcCC--CCeEEEEecCCceEEEEEEccCCCce
Q psy15995 152 IGFYIASGDISGKVRIWDTVNKEH-------ILKNEFHPIGGPIKDIAWSPD--NQRMVVVGEGRERFGHVFMSETGTSV 222 (683)
Q Consensus 152 ~~~~l~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~~~~~~~~~~~~~~~~ 222 (683)
++++|++++.||.|++||+.+++. .....+..|...|.+++|+|+ ++++++++.++. +.+|+..+++.+
T Consensus 70 d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~--v~iwd~~~~~~~ 147 (351)
T 3f3f_A 70 YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGI--LRLYDALEPSDL 147 (351)
T ss_dssp GCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCE--EEEEECSSTTCT
T ss_pred CCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCc--EEEecCCChHHh
Confidence 699999999999999999988642 223445677899999999999 999999887654 789998887766
Q ss_pred eeee-------------cCCcCeEEEEeecC---CCeEEEEeeCCCeEEEEcCCCCce--eeeccccccCeEEEEECCCC
Q psy15995 223 GEIS-------------GQSKPINSCDFKPS---RPFRIITGSEDNTIAVFEGPPFKF--KMTKQEHSRFVQAVRYSPSG 284 (683)
Q Consensus 223 ~~~~-------------~~~~~v~~~~~~~~---~~~~l~~~~~d~~i~iw~~~~~~~--~~~~~~~~~~v~~~~~~~~~ 284 (683)
..+. .|...+.+++|+|+ +. .+++++.++.+.+|+...++. ...+.+|...|.+++|+|++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~ 226 (351)
T 3f3f_A 148 RSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE-KLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSI 226 (351)
T ss_dssp TCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCC-EEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCS
T ss_pred ccccccccccccccccCCcccceeEEEeccCCCCCc-EEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCC
Confidence 5543 68889999999997 66 599999999998888777765 66778899999999999998
Q ss_pred ----CEEEEEcCCCcEEEEeCCCC----------------------------------------------eeEEeccCCc
Q psy15995 285 ----SHFASAGFDGKVFLYDGASA----------------------------------------------DLVSELGNPA 314 (683)
Q Consensus 285 ----~~l~~~~~dg~i~iw~~~~~----------------------------------------------~~~~~~~~~~ 314 (683)
++|++++.||.|++||+.++ +.+..+..
T Consensus 227 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 304 (351)
T 3f3f_A 227 GRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD-- 304 (351)
T ss_dssp SCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECT--
T ss_pred CCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEec--
Confidence 89999999999999998764 44555543
Q ss_pred cccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEE
Q psy15995 315 HKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFI 355 (683)
Q Consensus 315 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 355 (683)
|...|.+++|+|++++|++++.||.|++|++.+++....+.
T Consensus 305 h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp TSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred ccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 89999999999999999999999999999999887665543
No 109
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=5.8e-33 Score=271.98 Aligned_cols=295 Identities=13% Similarity=0.234 Sum_probs=237.5
Q ss_pred EEeCCCCcccccccCcccceEEEEECCC---CcEEEEecCCCCEEEEeCCC-cccc-cccccccCCCCcccceeeeeecc
Q psy15995 69 IRNIENPAISDIYTEHSCAVNVAKYSPS---GFYIASGDISGKVRIWDTVN-KEHI-LKNEFHPIGGPIKDIGTLLSLTS 143 (683)
Q Consensus 69 v~~~~~~~~~~~~~~h~~~v~~~~~s~d---~~~las~~~dg~i~iwd~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 143 (683)
.++....+.+..+.+|.+.|++++|+|+ |++||+|+.||.|++||+.+ +..+ ..+..|. ..
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~--------------~~ 88 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHT--------------GP 88 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECS--------------SC
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEecccc--------------CC
Confidence 3455666777889999999999999999 69999999999999999987 4333 3444443 78
Q ss_pred eeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEE--cCCCCeEEEEecCCceEEEEEEccCCCc
Q psy15995 144 IRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAW--SPDNQRMVVVGEGRERFGHVFMSETGTS 221 (683)
Q Consensus 144 i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~~~~~~~~~~~~~~~~~~~~~ 221 (683)
|.+++|+|++++|++++.||.|++||+.+++.+. ...|...|.+++| +|+++++++++.++. +.+|+..+++.
T Consensus 89 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~--i~vwd~~~~~~ 163 (368)
T 3mmy_A 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ---IAQHDAPVKTIHWIKAPNYSCVMTGSWDKT--LKFWDTRSSNP 163 (368)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE---EEECSSCEEEEEEEECSSCEEEEEEETTSE--EEEECSSCSSC
T ss_pred EEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee---eccccCceEEEEEEeCCCCCEEEEccCCCc--EEEEECCCCcE
Confidence 9999999999999999999999999999987553 4457799999999 999999999887754 78999999998
Q ss_pred eeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeec--cccccCeEEEEECCCCCE----EEEEcCCCc
Q psy15995 222 VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK--QEHSRFVQAVRYSPSGSH----FASAGFDGK 295 (683)
Q Consensus 222 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~----l~~~~~dg~ 295 (683)
+..+..+. .+.++.+.++ .+++++.++.+.+|+.......... ..+...+.++++.++... +++++.||.
T Consensus 164 ~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~ 239 (368)
T 3mmy_A 164 MMVLQLPE-RCYCADVIYP---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR 239 (368)
T ss_dssp SEEEECSS-CEEEEEEETT---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSE
T ss_pred EEEEecCC-CceEEEecCC---eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCc
Confidence 88888775 5666666654 4888899999999998776543322 234455666666655543 999999999
Q ss_pred EEEEeCCCC---eeEEeccCCcccc------------CeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcc
Q psy15995 296 VFLYDGASA---DLVSELGNPAHKG------------GVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQV 360 (683)
Q Consensus 296 i~iw~~~~~---~~~~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 360 (683)
|++|++... .....+.. |.. .|.+++|+|++++|++++.||.|++||+.+++.+..
T Consensus 240 i~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~------- 310 (368)
T 3mmy_A 240 VAIHYINPPNPAKDNFTFKC--HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT------- 310 (368)
T ss_dssp EEEEESSCSCHHHHSEEEEC--SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE-------
T ss_pred EEEEecCCCCccccceeeee--eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEE-------
Confidence 999999887 34444443 444 799999999999999999999999999998765433
Q ss_pred eeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCC
Q psy15995 361 EDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 432 (683)
Q Consensus 361 ~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~ 432 (683)
+..|...|.+++|+|++++|++++.|+..+.|++.
T Consensus 311 -------------------------------------~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 311 -------------------------------------SEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp -------------------------------------CCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred -------------------------------------ecCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 35688999999999999999999998866555543
No 110
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=4.8e-33 Score=270.64 Aligned_cols=311 Identities=19% Similarity=0.242 Sum_probs=220.0
Q ss_pred eeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCC----ceeeeccccccCeEEEEECC--CCCEEEEEcCCCcE
Q psy15995 223 GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF----KFKMTKQEHSRFVQAVRYSP--SGSHFASAGFDGKV 296 (683)
Q Consensus 223 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i 296 (683)
..+.+|.+.|++++|+|++++ |++++.||.|++||+.++ +....+.+|...|.+++|+| ++++|++++.||.|
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRH-VATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSE-EEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ccCcccccceeEEEEcCCCCE-EEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 446789999999999999995 999999999999998876 46667788999999999999 69999999999999
Q ss_pred EEEeCCCC---------eeEEeccCCccccCeEEEEEccC--CCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceE
Q psy15995 297 FLYDGASA---------DLVSELGNPAHKGGVYAVAWKPD--GTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQV 365 (683)
Q Consensus 297 ~iw~~~~~---------~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (683)
++||+.++ +.+..+.. |...|.+++|+|+ ++++++++.||.|++||+++++.+..+.......
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~---- 157 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLND--SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK---- 157 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECC--CSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE----
T ss_pred EEEecCCCcccccccCcceeeeecc--cCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccc----
Confidence 99999887 44566654 9999999999999 9999999999999999999887654433211100
Q ss_pred EEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCC---CCEEEEEeCCCcEEEEcCCCCCcceec-c
Q psy15995 366 SCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPD---RGTVFTGSHDGFITRWNAKTGENDRVQ-G 441 (683)
Q Consensus 366 ~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~w~~~~~~~~~~~-~ 441 (683)
........|...+.+++|+|+ +..+++++.++.+.+|+...++..... .
T Consensus 158 ---------------------------~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (351)
T 3f3f_A 158 ---------------------------VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKL 210 (351)
T ss_dssp ---------------------------SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEEC
T ss_pred ---------------------------ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeec
Confidence 000112357788999999997 899999999999988877655432111 0
Q ss_pred CCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCC
Q psy15995 442 AGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPID 521 (683)
Q Consensus 442 ~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (683)
.. +.
T Consensus 211 ~~----------------------------------------------------------------------------h~ 214 (351)
T 3f3f_A 211 PG----------------------------------------------------------------------------HK 214 (351)
T ss_dssp CC----------------------------------------------------------------------------CC
T ss_pred CC----------------------------------------------------------------------------CC
Confidence 11 23
Q ss_pred CCCcEEEEccCC----CEEEEEcCCCcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEe----CCCeEEEEEC
Q psy15995 522 YEPSSISLDHEH----GLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASD----AHRKVVLYRV 593 (683)
Q Consensus 522 ~~~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~d~~i~i~~~ 593 (683)
..+.+++++|++ ++|++++.||.|++||+..+...... ............++....++.+. ....+.+|+.
T Consensus 215 ~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (351)
T 3f3f_A 215 SLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLAS-EESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSN 293 (351)
T ss_dssp SCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------------------------------------CCS
T ss_pred cceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCcccc-CCcccceeccCCCcccccccccccccccceeeeeccc
Confidence 356788999998 89999999999999999876443221 12333334444444444444443 2334445544
Q ss_pred CCCccccccceeeecccEEEEEecCCCCeEEEeecCCcEEEEeCCCCceeeEe
Q psy15995 594 PDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIII 646 (683)
Q Consensus 594 ~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~~~~~~~ 646 (683)
...+.+. .+.+|...|++++|+|++++|++++.||.|++|++.+++....+
T Consensus 294 ~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 294 LQVELLS--EHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EEEEEEE--EECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred ccccEEE--EEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 4444433 33448999999999999999999999999999999987655444
No 111
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-32 Score=274.86 Aligned_cols=282 Identities=11% Similarity=0.023 Sum_probs=231.3
Q ss_pred CeEEEeeCCCCCeEEEecCCeEEEEeCCCCc---ccccccC---------------------------------------
Q psy15995 46 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPA---ISDIYTE--------------------------------------- 83 (683)
Q Consensus 46 ~~~~~~~s~~~~~l~~~~~~~i~v~~~~~~~---~~~~~~~--------------------------------------- 83 (683)
.+.+++|||||++|+++.++.|.+||+.+++ .+..+..
T Consensus 6 p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIK 85 (450)
T ss_dssp CCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-------------------------------------
T ss_pred cEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccc
Confidence 4678889999999999999999999999988 5544443
Q ss_pred ---------------cccceEEEEECCCCcEE-EEecCCCCEEEEeCC--CcccccccccccCCCCcccceeeeeeccee
Q psy15995 84 ---------------HSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTV--NKEHILKNEFHPIGGPIKDIGTLLSLTSIR 145 (683)
Q Consensus 84 ---------------h~~~v~~~~~s~d~~~l-as~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 145 (683)
|.+.|++++|+|+|++| |+++.||.|+|||+. +++.+..+..+.. ...+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~------------~~~v~ 153 (450)
T 2vdu_B 86 RTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCF------------SKRPN 153 (450)
T ss_dssp --------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEEC------------SSCEE
T ss_pred ccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccC------------CCCce
Confidence 44479999999999996 899999999999998 7776666543221 16789
Q ss_pred eeEeeccceEEEeecCCccEEEEecccccee--eeccccccCCCeeEEEEcCC---CCeEEEEecCCceEEEEEEccCCC
Q psy15995 146 NILVLSIGFYIASGDISGKVRIWDTVNKEHI--LKNEFHPIGGPIKDIAWSPD---NQRMVVVGEGRERFGHVFMSETGT 220 (683)
Q Consensus 146 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~~~~~~~~~~~~~~~~ 220 (683)
+++|+|++++|++++.+|.+++|++.+++.. ....+..|...|.+++|+|+ ++++++++.+.. +.+|+..+++
T Consensus 154 ~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~--i~vwd~~~~~ 231 (450)
T 2vdu_B 154 AISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEH--IKISHYPQCF 231 (450)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSC--EEEEEESCTT
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCc--EEEEECCCCc
Confidence 9999999999999999999999999887644 22355678899999999999 889998887654 7899999998
Q ss_pred ceee-eecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccc-------------------------cccC
Q psy15995 221 SVGE-ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE-------------------------HSRF 274 (683)
Q Consensus 221 ~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-------------------------~~~~ 274 (683)
.+.. +.+|...|.+++|+ ++.+ |++++.|+.|++||+.+++.+..+.. ....
T Consensus 232 ~~~~~~~~h~~~v~~~~~s-d~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 232 IVDKWLFGHKHFVSSICCG-KDYL-LLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp CEEEECCCCSSCEEEEEEC-STTE-EEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred eeeeeecCCCCceEEEEEC-CCCE-EEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 8877 66999999999999 8885 99999999999999999988777652 2357
Q ss_pred eEEEEECCCCCEEEEEc-CCCcEEEEeC--CCC---eeEEeccCCccccCeEEEEEccCCCEEEEEEC-------CCcEE
Q psy15995 275 VQAVRYSPSGSHFASAG-FDGKVFLYDG--ASA---DLVSELGNPAHKGGVYAVAWKPDGTQLLTASG-------DKTCK 341 (683)
Q Consensus 275 v~~~~~~~~~~~l~~~~-~dg~i~iw~~--~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------dg~i~ 341 (683)
|.+++|+|++++|++++ .++.|++|++ .++ +.+..+.. + ..|.+++|+|++ .+++.+. +..|.
T Consensus 310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~--~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~ 385 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITF--P-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAK 385 (450)
T ss_dssp EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC--S-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEE
T ss_pred EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEecc--C-CceEEEEecCCc-EEEEEecccCCCCCCcceE
Confidence 89999999999999988 8999999999 555 56666654 5 789999999954 4555433 44578
Q ss_pred EEECCC
Q psy15995 342 LWDIET 347 (683)
Q Consensus 342 iwd~~~ 347 (683)
+|.+..
T Consensus 386 v~~~~~ 391 (450)
T 2vdu_B 386 FIEYNL 391 (450)
T ss_dssp EEEEET
T ss_pred EEEEEc
Confidence 887653
No 112
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.2e-33 Score=277.46 Aligned_cols=286 Identities=14% Similarity=0.182 Sum_probs=233.0
Q ss_pred CeEEEeeCCCCCeEEE--ecCCeEEEEeCCCC----cccccccCcccceEEEEECC-CCcEEEEecCCCCEEEEeCCCcc
Q psy15995 46 QPIVLGGDPKGKNFLY--TNGNSVIIRNIENP----AISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKE 118 (683)
Q Consensus 46 ~~~~~~~s~~~~~l~~--~~~~~i~v~~~~~~----~~~~~~~~h~~~v~~~~~s~-d~~~las~~~dg~i~iwd~~~~~ 118 (683)
....++++|+...+++ +.+|.|.||++... .....+.+|.+.|++++|+| ++++||+|+.||.|+|||+.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 3445778888877664 35889999998654 34556889999999999999 99999999999999999999873
Q ss_pred -------cccccccccCCCCcccceeeeeecceeeeEeeccc-eEEEeecCCccEEEEeccccceeeeccccccCCCeeE
Q psy15995 119 -------HILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIG-FYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKD 190 (683)
Q Consensus 119 -------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~ 190 (683)
.+..+..|. ..|.+++|+|++ .+|++++.|+.|++||+.+++.+.......|...|.+
T Consensus 116 ~~~~~~~~~~~~~~h~--------------~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 181 (402)
T 2aq5_A 116 LVLPLREPVITLEGHT--------------KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYS 181 (402)
T ss_dssp CSSCBCSCSEEEECCS--------------SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEE
T ss_pred CccccCCceEEecCCC--------------CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEE
Confidence 333333333 789999999998 6999999999999999999886654433667899999
Q ss_pred EEEcCCCCeEEEEecCCceEEEEEEccCCCceeee-ecCCcC-eEEEEeecCCCeEEEEe---eCCCeEEEEcCCCCce-
Q psy15995 191 IAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEI-SGQSKP-INSCDFKPSRPFRIITG---SEDNTIAVFEGPPFKF- 264 (683)
Q Consensus 191 ~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~~l~~~---~~d~~i~iw~~~~~~~- 264 (683)
++|+|+++++++++.++. +.+|+.++++.+..+ ..|.+. +.++.|+|++.+ ++++ +.|+.|++||..+++.
T Consensus 182 ~~~~~~~~~l~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~g~~~~~d~~i~iwd~~~~~~~ 258 (402)
T 2aq5_A 182 VDWSRDGALICTSCRDKR--VRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKI-LTTGFSRMSERQVALWDTKHLEEP 258 (402)
T ss_dssp EEECTTSSCEEEEETTSE--EEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEE-EEEEECTTCCEEEEEEETTBCSSC
T ss_pred EEECCCCCEEEEEecCCc--EEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcE-EEEeccCCCCceEEEEcCccccCC
Confidence 999999999999987654 789999999999888 788776 899999999884 8888 7899999999988664
Q ss_pred eeec-cccccCeEEEEECCCCCEEE-EEcCCCcEEEEeCCCCee-EEeccCCccccCeEEEEEccCCCEEEEEECCCcEE
Q psy15995 265 KMTK-QEHSRFVQAVRYSPSGSHFA-SAGFDGKVFLYDGASADL-VSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCK 341 (683)
Q Consensus 265 ~~~~-~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 341 (683)
.... ..|...+.+++|+|++++|+ +++.||.|++||+.+++. +..+....+...|.+++|+|++.++++ .++.++
T Consensus 259 ~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~ 336 (402)
T 2aq5_A 259 LSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIAR 336 (402)
T ss_dssp SEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEE
T ss_pred ceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEE
Confidence 2222 25777899999999999886 555799999999998873 444433225689999999999988765 566899
Q ss_pred EEECCCCce
Q psy15995 342 LWDIETKSV 350 (683)
Q Consensus 342 iwd~~~~~~ 350 (683)
+|++.++..
T Consensus 337 ~~~l~~~~~ 345 (402)
T 2aq5_A 337 FYKLHERKC 345 (402)
T ss_dssp EEEEETTEE
T ss_pred EEEcCCCcE
Confidence 999987654
No 113
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=3.8e-31 Score=264.81 Aligned_cols=306 Identities=15% Similarity=0.118 Sum_probs=239.2
Q ss_pred EeeCCC--eEEEEcCCCC--ceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccC---CccccCe
Q psy15995 247 TGSEDN--TIAVFEGPPF--KFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGN---PAHKGGV 319 (683)
Q Consensus 247 ~~~~d~--~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~~~i 319 (683)
+++.++ .|..+|..++ +....+..+ ..+.+++|+|++.++++++.++.|++||+.+++....+.. ..|...+
T Consensus 94 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v 172 (433)
T 3bws_A 94 RKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFV 172 (433)
T ss_dssp SSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEE
T ss_pred cccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCce
Confidence 344455 4444554334 444555444 4466899999777888888889999999999988874322 2478899
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeee
Q psy15995 320 YAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIK 399 (683)
Q Consensus 320 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~ 399 (683)
.+++|+|+++++++++.|+.|++||+++++.+..+ .
T Consensus 173 ~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~--------------------------------------------~ 208 (433)
T 3bws_A 173 ETISIPEHNELWVSQMQANAVHVFDLKTLAYKATV--------------------------------------------D 208 (433)
T ss_dssp EEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEE--------------------------------------------E
T ss_pred eEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEE--------------------------------------------c
Confidence 99999999999999999999999999887655432 3
Q ss_pred eccccEEEEEEeCCCCEEE-EEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCccc
Q psy15995 400 GHNKPITALALSPDRGTVF-TGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYS 478 (683)
Q Consensus 400 ~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~ 478 (683)
.|...+.+++|+|+++.++ +++.|+.|++||+.+++......
T Consensus 209 ~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~------------------------------------- 251 (433)
T 3bws_A 209 LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD------------------------------------- 251 (433)
T ss_dssp CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC-------------------------------------
T ss_pred CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec-------------------------------------
Confidence 5677899999999999885 55579999999998765443331
Q ss_pred CCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEc--------CCCcEEEEEc
Q psy15995 479 GPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGG--------ADSKVHIYEL 550 (683)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~dg~i~i~d~ 550 (683)
....+.+++++|+++++++++ .|+.|++||+
T Consensus 252 -----------------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~ 290 (433)
T 3bws_A 252 -----------------------------------------KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSM 290 (433)
T ss_dssp -----------------------------------------CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEET
T ss_pred -----------------------------------------CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEEC
Confidence 011256788999999998887 5889999999
Q ss_pred CCCccCcceeecCCcCeeEEEECCCCCEE-EEEeCCCeEEEEECCCCccccccceeeecccEEEEEecCCCCeEEEeec-
Q psy15995 551 NNKSLSPKAELDHLGPVTDCSFSPSNEYL-VASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSL- 628 (683)
Q Consensus 551 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~- 628 (683)
.+++..... .+...+.+++|+|+++++ ++++.++.|++||+.+++...... +...+.+++|+|++++|++++.
T Consensus 291 ~~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~ 365 (433)
T 3bws_A 291 DKEKLIDTI--GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP---VFDKPNTIALSPDGKYLYVSCRG 365 (433)
T ss_dssp TTTEEEEEE--EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE---CSSSEEEEEECTTSSEEEEEECC
T ss_pred CCCcEEeec--cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec---CCCCCCeEEEcCCCCEEEEEecC
Confidence 988765333 456688999999999765 566899999999999888764433 6788999999999999988876
Q ss_pred --------------CCcEEEEeCCCCceeeEeecCCCCCCeeEEEEc-cCCeEEEeeC-CCcEEEEeeccC
Q psy15995 629 --------------DTTIIIWSLASPAKHIIIKNAHPQSQITRLQWL-DNDLLVSVGQ-DCNTKIWEIAPF 683 (683)
Q Consensus 629 --------------d~~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~-d~~v~vw~~~~~ 683 (683)
||.|++||+.+++....+.. ...+.+++|+ ++++|++++. |+.|++|+++.|
T Consensus 366 ~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~~ 433 (433)
T 3bws_A 366 PNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA---GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDGF 433 (433)
T ss_dssp CCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC---SSSEEEEEECTTSCEEEEEETTTTEEEEEEETTC
T ss_pred CCccccccccccccceEEEEEECCCCcEEEEecC---CCCCceEEEcCCCCEEEEEECCCCeEEEEEecCC
Confidence 57999999999988877764 4579999999 7778887774 999999999876
No 114
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-32 Score=270.08 Aligned_cols=301 Identities=15% Similarity=0.090 Sum_probs=230.5
Q ss_pred ccceEEEEECCCCcEEEEecCCCCEEEEeCCCcc---cccccccccCC-------------CC-----------------
Q psy15995 85 SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE---HILKNEFHPIG-------------GP----------------- 131 (683)
Q Consensus 85 ~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~---~~~~~~~~~~~-------------~~----------------- 131 (683)
..++++++|+|||++|+++ .++.|++||+.+++ .+..+..+... ..
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999977766 46799999999998 55444322110 00
Q ss_pred ----------cccceeeeeecceeeeEeeccceEE-EeecCCccEEEEecc--ccceeeeccccccCCCeeEEEEcCCCC
Q psy15995 132 ----------IKDIGTLLSLTSIRNILVLSIGFYI-ASGDISGKVRIWDTV--NKEHILKNEFHPIGGPIKDIAWSPDNQ 198 (683)
Q Consensus 132 ----------~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~i~~~~~s~~~~ 198 (683)
........+...|.+++|+|++++| ++++.||.|++||+. +++.+.......+...|.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 0000001122369999999999996 899999999999999 777665554446678999999999999
Q ss_pred eEEEEecCCceEEEEEEccCCCcee----eeecCCcCeEEEEeecC---CCeEEEEeeCCCeEEEEcCCCCceeee-ccc
Q psy15995 199 RMVVVGEGRERFGHVFMSETGTSVG----EISGQSKPINSCDFKPS---RPFRIITGSEDNTIAVFEGPPFKFKMT-KQE 270 (683)
Q Consensus 199 ~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~~l~~~~~d~~i~iw~~~~~~~~~~-~~~ 270 (683)
+|++++.+.. +.+|+...+.... .+.+|...|.+++|+|+ +++ |++++.|+.|++||+++++.+.. +.+
T Consensus 163 ~l~~~~~~g~--v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~-l~s~~~d~~i~vwd~~~~~~~~~~~~~ 239 (450)
T 2vdu_B 163 TVIIADKFGD--VYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQF-IITSDRDEHIKISHYPQCFIVDKWLFG 239 (450)
T ss_dssp EEEEEETTSE--EEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEE-EEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred EEEEEeCCCc--EEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcE-EEEEcCCCcEEEEECCCCceeeeeecC
Confidence 9999887543 5777777666544 78899999999999999 774 99999999999999999988877 668
Q ss_pred cccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCC-----------------------ccccCeEEEEEccC
Q psy15995 271 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP-----------------------AHKGGVYAVAWKPD 327 (683)
Q Consensus 271 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----------------------~~~~~i~~~~~~~~ 327 (683)
|...|.+++|+ ++++|++++.|+.|++||+.+++.+..+... .....|.+++|+|+
T Consensus 240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 318 (450)
T 2vdu_B 240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN 318 (450)
T ss_dssp CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Confidence 99999999999 9999999999999999999999988777531 13457899999999
Q ss_pred CCEEEEEE-CCCcEEEEEC--CCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeecccc
Q psy15995 328 GTQLLTAS-GDKTCKLWDI--ETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKP 404 (683)
Q Consensus 328 ~~~l~~~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 404 (683)
++++++++ .++.|++|++ ..+..+. .+..+..| ..
T Consensus 319 ~~~l~~~~~~d~~i~iw~~~~~~~~~l~-----------------------------------------~~~~~~~~-~~ 356 (450)
T 2vdu_B 319 LPFVAFFVEATKCIIILEMSEKQKGDLA-----------------------------------------LKQIITFP-YN 356 (450)
T ss_dssp SSEEEEEETTCSEEEEEEECSSSTTCEE-----------------------------------------EEEEEECS-SC
T ss_pred CCEEEEEECCCCeEEEEEeccCCCCcee-----------------------------------------eccEeccC-Cc
Confidence 99999998 8999999998 4432211 12334555 78
Q ss_pred EEEEEEeCCCCEEEEE-eC------CCcEEEEcCCC
Q psy15995 405 ITALALSPDRGTVFTG-SH------DGFITRWNAKT 433 (683)
Q Consensus 405 v~~~~~~~~~~~l~~~-~~------dg~i~~w~~~~ 433 (683)
+.+++|+|++ .+++. +. +..|.+|.+..
T Consensus 357 v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 357 VISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred eEEEEecCCc-EEEEEecccCCCCCCcceEEEEEEc
Confidence 9999999964 44444 32 44578886543
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=5.5e-31 Score=259.80 Aligned_cols=331 Identities=15% Similarity=0.154 Sum_probs=254.2
Q ss_pred eEEEe-cCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEE-EEecCCCCEEEEeCCCcccccccccccCCCCcccc
Q psy15995 58 NFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDI 135 (683)
Q Consensus 58 ~l~~~-~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l-as~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 135 (683)
+++++ .++.|.+||+++++.+..+.+|. .+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..+
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~--------- 73 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG--------- 73 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS---------
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC---------
Confidence 34444 57899999999999988888776 48999999999987 67779999999999998877665443
Q ss_pred eeeeeecceeeeEeeccceEEE-eecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEE
Q psy15995 136 GTLLSLTSIRNILVLSIGFYIA-SGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVF 214 (683)
Q Consensus 136 ~~~~~~~~i~~~~~s~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~ 214 (683)
..+.+++|+|++++|+ +++.++.|++||+.+++.+.... +...+.+++|+|+++.+++++... ..+.+|
T Consensus 74 ------~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~-~~v~~~ 143 (391)
T 1l0q_A 74 ------SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK---TGKSPLGLALSPDGKKLYVTNNGD-KTVSVI 143 (391)
T ss_dssp ------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---CSSSEEEEEECTTSSEEEEEETTT-TEEEEE
T ss_pred ------CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe---CCCCcceEEECCCCCEEEEEeCCC-CEEEEE
Confidence 4688999999999875 55567999999999987654433 236789999999999886655433 347889
Q ss_pred EccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEc---
Q psy15995 215 MSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG--- 291 (683)
Q Consensus 215 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--- 291 (683)
+..+++.+..+..+ ..+..++|+|+++.++++++.++.|++||+.+++....+. +...+.+++|+|+++++++++
T Consensus 144 d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~ 221 (391)
T 1l0q_A 144 NTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDK 221 (391)
T ss_dssp ETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECS
T ss_pred ECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCc
Confidence 98888888887766 4569999999999756788899999999999988777665 456789999999999998887
Q ss_pred CCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEE-EEEECCCcEEEEECCCCceeeEEEecCccee--------
Q psy15995 292 FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQL-LTASGDKTCKLWDIETKSVVSEFIMGNQVED-------- 362 (683)
Q Consensus 292 ~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------- 362 (683)
.++.|++||+.+++.+..+.. + ..+.+++|+|+++++ ++++.|+.|++||+.+++.+..+........
T Consensus 222 ~~~~v~~~d~~~~~~~~~~~~--~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (391)
T 1l0q_A 222 YFNTVSMIDTGTNKITARIPV--G-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSI 298 (391)
T ss_dssp SCCEEEEEETTTTEEEEEEEC--C-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEEC
T ss_pred CCCcEEEEECCCCeEEEEEec--C-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecc
Confidence 689999999999998888764 3 457899999999987 5667899999999999988877765433211
Q ss_pred ------ceEEEEec--------C--CEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEE
Q psy15995 363 ------QQVSCLWQ--------G--DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 420 (683)
Q Consensus 363 ------~~~~~~~~--------~--~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 420 (683)
....+..+ . -.+...+.+...++|+...+... .+..+ ...|+++|.+.++.
T Consensus 299 ~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~-----~~~~~--~~~~~~~g~y~~~~ 365 (391)
T 1l0q_A 299 PVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS-----KKQNP--THTYSETGIYTVRL 365 (391)
T ss_dssp SSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE-----CSSSC--EECCSSCEEEEEEE
T ss_pred cccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCccc-----CcCCC--eEEeCCCceEEEEE
Confidence 01111111 1 23444456778899998764321 12222 35688888777643
No 116
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.1e-30 Score=261.44 Aligned_cols=304 Identities=11% Similarity=0.026 Sum_probs=235.3
Q ss_pred eEEEEeCCCC--cccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecc
Q psy15995 66 SVIIRNIENP--AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTS 143 (683)
Q Consensus 66 ~i~v~~~~~~--~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (683)
.|..+|.+++ +.+..+..+. .+.+++|+|+++++++++.++.|++||+.+++.......... ..+...
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~---------~~~~~~ 171 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKY---------KKKLGF 171 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHH---------HTTCCE
T ss_pred EEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccc---------cccCCc
Confidence 5555565445 4555565554 466999999888889999999999999999877653321110 011257
Q ss_pred eeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCcee
Q psy15995 144 IRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVG 223 (683)
Q Consensus 144 i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 223 (683)
+.+++|+++++++++++.|+.|++||+.+++.+.. +..+...+.+++|+|+++.+++++... ..+.+|+.++++.+.
T Consensus 172 v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~i~~~d~~~~~~~~ 248 (433)
T 3bws_A 172 VETISIPEHNELWVSQMQANAVHVFDLKTLAYKAT--VDLTGKWSKILLYDPIRDLVYCSNWIS-EDISVIDRKTKLEIR 248 (433)
T ss_dssp EEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEE--EECSSSSEEEEEEETTTTEEEEEETTT-TEEEEEETTTTEEEE
T ss_pred eeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEE--EcCCCCCeeEEEEcCCCCEEEEEecCC-CcEEEEECCCCcEEE
Confidence 88999999999999999999999999998876543 345668899999999999987776432 237889988888877
Q ss_pred eeecCCcCeEEEEeecCCCeEEEEee--------CCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEE-EEEcCCC
Q psy15995 224 EISGQSKPINSCDFKPSRPFRIITGS--------EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHF-ASAGFDG 294 (683)
Q Consensus 224 ~~~~~~~~v~~~~~~~~~~~~l~~~~--------~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg 294 (683)
.+..+. .+.+++|+|+++. +++++ .|+.|++||..+++....+ .|...+.+++|+|+++.+ ++++.++
T Consensus 249 ~~~~~~-~~~~~~~~~~g~~-l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~ 325 (433)
T 3bws_A 249 KTDKIG-LPRGLLLSKDGKE-LYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCS 325 (433)
T ss_dssp ECCCCS-EEEEEEECTTSSE-EEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTT
T ss_pred EecCCC-CceEEEEcCCCCE-EEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCC
Confidence 776654 5899999999986 66666 5889999999988876655 456689999999999755 6668899
Q ss_pred cEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECC---------------CcEEEEECCCCceeeEEEecCc
Q psy15995 295 KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD---------------KTCKLWDIETKSVVSEFIMGNQ 359 (683)
Q Consensus 295 ~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~~~~~~~~~~~ 359 (683)
.|++||+.+++....+. +...+.+++|+|+++++++++.+ |.|++||+.+++.+..
T Consensus 326 ~v~v~d~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~------ 396 (433)
T 3bws_A 326 KIEVYDLKEKKVQKSIP---VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEF------ 396 (433)
T ss_dssp EEEEEETTTTEEEEEEE---CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEE------
T ss_pred EEEEEECCCCcEEEEec---CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEE------
Confidence 99999999998888775 66789999999999999888763 4666666665544332
Q ss_pred ceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeC-CCcEEEEcCCC
Q psy15995 360 VEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSH-DGFITRWNAKT 433 (683)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~w~~~~ 433 (683)
+.. ...+.+++|+|++++|++++. |+.|++|++..
T Consensus 397 --------------------------------------~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 397 --------------------------------------WEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp --------------------------------------EEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred --------------------------------------ecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 222 346889999999999988775 99999999753
No 117
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-33 Score=298.51 Aligned_cols=255 Identities=20% Similarity=0.284 Sum_probs=213.4
Q ss_pred cccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCC--CcccccccccccCCCCcccceeeeeecceeeeEeecc--c
Q psy15995 78 SDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV--NKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSI--G 153 (683)
Q Consensus 78 ~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~ 153 (683)
+.++.+|.++|++++|+|+|++|++|+.||.|+|||+. +++.+..+..|. ..|.+++|+|+ +
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~--------------~~V~~l~~s~~~~~ 67 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHE--------------GPVWRVDWAHPKFG 67 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCS--------------SCEEEEEECCTTSC
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCc--------------CceEEEEecCCCCC
Confidence 35688999999999999999999999999999999998 445555555554 78999999998 9
Q ss_pred eEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCC--CCeEEEEecCCceEEEEEEccCC--CceeeeecCC
Q psy15995 154 FYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD--NQRMVVVGEGRERFGHVFMSETG--TSVGEISGQS 229 (683)
Q Consensus 154 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 229 (683)
++|++++.||.|++||+.+++......+..|...|.+++|+|+ ++.+++++.++. +.+|+...+ .....+.+|.
T Consensus 68 ~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~--I~vwdl~~~~~~~~~~~~~~~ 145 (753)
T 3jro_A 68 TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK--VSVVEFKENGTTSPIIIDAHA 145 (753)
T ss_dssp SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSE--EEEEECCSSSCCCCEEEECCS
T ss_pred CEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCc--EEEEEeecCCCcceeEeecCC
Confidence 9999999999999999999875555666778899999999999 999999887754 788888876 3455678999
Q ss_pred cCeEEEEeecC-------------CCeEEEEeeCCCeEEEEcCCCC----ceeeeccccccCeEEEEECCC---CCEEEE
Q psy15995 230 KPINSCDFKPS-------------RPFRIITGSEDNTIAVFEGPPF----KFKMTKQEHSRFVQAVRYSPS---GSHFAS 289 (683)
Q Consensus 230 ~~v~~~~~~~~-------------~~~~l~~~~~d~~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~---~~~l~~ 289 (683)
..|.+++|+|. +. .+++++.||.|++||++++ .....+.+|...|.+++|+|+ ++++++
T Consensus 146 ~~v~~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s 224 (753)
T 3jro_A 146 IGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224 (753)
T ss_dssp SCEEEEEECCCC---------CGGGC-CEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred CceEEEEecCcccccccccccCCCCC-EEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEE
Confidence 99999999994 66 5999999999999998776 556677899999999999999 899999
Q ss_pred EcCCCcEEEEeCCCCeeE---EeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCc
Q psy15995 290 AGFDGKVFLYDGASADLV---SELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKS 349 (683)
Q Consensus 290 ~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 349 (683)
++.||.|++||+.+++.. .......|...|.+++|+|+++++++++.||.|++|++..+.
T Consensus 225 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 225 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 999999999999886421 122223488899999999999999999999999999998654
No 118
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=2.6e-30 Score=254.95 Aligned_cols=274 Identities=15% Similarity=0.159 Sum_probs=226.2
Q ss_pred cEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEE-EeecCCccEEEEecccccee
Q psy15995 98 FYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYI-ASGDISGKVRIWDTVNKEHI 176 (683)
Q Consensus 98 ~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~d~~i~iwd~~~~~~~ 176 (683)
.++++++.|+.|++||+.+++.+..+..+ ..+.+++|+|++++| ++++.|+.|++||+.+++.+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~---------------~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~ 67 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVG---------------SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI 67 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECS---------------SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecC---------------CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEE
Confidence 46788999999999999999877766554 457899999999977 67779999999999998866
Q ss_pred eeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEE
Q psy15995 177 LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAV 256 (683)
Q Consensus 177 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 256 (683)
...... ..+.+++|+|+++++++++... ..+.+|+.++++.+..+..+ ..+.+++|+|+++.++++++.++.|++
T Consensus 68 ~~~~~~---~~v~~~~~spdg~~l~~~~~~~-~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~ 142 (391)
T 1l0q_A 68 ATVPAG---SSPQGVAVSPDGKQVYVTNMAS-STLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSV 142 (391)
T ss_dssp EEEECS---SSEEEEEECTTSSEEEEEETTT-TEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EEEECC---CCccceEECCCCCEEEEEECCC-CEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEE
Confidence 544332 4899999999999998776543 23789999988888777755 468999999999975688899999999
Q ss_pred EcCCCCceeeeccccccCeEEEEECCCCCEE-EEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEE
Q psy15995 257 FEGPPFKFKMTKQEHSRFVQAVRYSPSGSHF-ASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS 335 (683)
Q Consensus 257 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 335 (683)
||..+++....+..+ ..+.+++|+|+++.+ ++++.++.|++||+.+++....+. +...+.+++|+|+++++++++
T Consensus 143 ~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~ 218 (391)
T 1l0q_A 143 INTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK---VEAAPSGIAVNPEGTKAYVTN 218 (391)
T ss_dssp EETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---CSSEEEEEEECTTSSEEEEEE
T ss_pred EECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe---cCCCccceEECCCCCEEEEEe
Confidence 999999888877765 457999999999977 577888999999999998887775 556889999999999999888
Q ss_pred ---CCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeC
Q psy15995 336 ---GDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSP 412 (683)
Q Consensus 336 ---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 412 (683)
.++.|++||+.+++.+..+ ..| ..+.+++|+|
T Consensus 219 ~~~~~~~v~~~d~~~~~~~~~~--------------------------------------------~~~-~~~~~~~~s~ 253 (391)
T 1l0q_A 219 VDKYFNTVSMIDTGTNKITARI--------------------------------------------PVG-PDPAGIAVTP 253 (391)
T ss_dssp ECSSCCEEEEEETTTTEEEEEE--------------------------------------------ECC-SSEEEEEECT
T ss_pred cCcCCCcEEEEECCCCeEEEEE--------------------------------------------ecC-CCccEEEEcc
Confidence 6899999999987654433 222 2468899999
Q ss_pred CCCEE-EEEeCCCcEEEEcCCCCCcceec
Q psy15995 413 DRGTV-FTGSHDGFITRWNAKTGENDRVQ 440 (683)
Q Consensus 413 ~~~~l-~~~~~dg~i~~w~~~~~~~~~~~ 440 (683)
+++++ ++++.|+.|++||+.+++.....
T Consensus 254 dg~~l~~s~~~d~~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 254 DGKKVYVALSFXNTVSVIDTATNTITATM 282 (391)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence 99887 57788999999999988776554
No 119
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1e-31 Score=259.24 Aligned_cols=281 Identities=12% Similarity=0.105 Sum_probs=219.9
Q ss_pred cccCCCeEEEeeCCCCCeEEEecCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEE-EEecCCCCEEEEeCCCccc
Q psy15995 41 RTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEH 119 (683)
Q Consensus 41 ~~~~~~~~~~~~s~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l-as~~~dg~i~iwd~~~~~~ 119 (683)
..+.+.+.+++|||||++|+++.++.+++||.++++...... ...+..++++++++++ ++++.|++|++||+.+++.
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~ 93 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQD 93 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEE--CSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEE
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeee--cCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcE
Confidence 345678999999999999999988889999998877654433 2358889999988888 4677889999999999988
Q ss_pred ccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEecccc-ceeeeccccccCCCeeEEEEcCCCC
Q psy15995 120 ILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNK-EHILKNEFHPIGGPIKDIAWSPDNQ 198 (683)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~ 198 (683)
+..+..+ ..+.++.++++...++ .++.|++||+.++ +.+..... +...+++++ .
T Consensus 94 ~~~~~~~---------------~~v~~v~~~~~~~~~~---~~~~i~i~d~~~~~~~~~~~~~-----~~~~~~~s~--~ 148 (355)
T 3vu4_A 94 VSRIKVD---------------APVKDLFLSREFIVVS---YGDVISVFKFGNPWKRITDDIR-----FGGVCEFSN--G 148 (355)
T ss_dssp EEEEECS---------------SCEEEEEECSSEEEEE---ETTEEEEEESSTTCCBSSCCEE-----EEEEEEEET--T
T ss_pred EEEEECC---------------CceEEEEEcCCEEEEE---EcCEEEEEECCCCceeeEEecc-----CCceEEEEc--c
Confidence 7766533 5688899988764433 3789999999987 54433222 445566777 6
Q ss_pred eEEEEecCCceEEEEEEccCCC----------------ceeeeecCCcCeEEEEeecCCCeEEEEeeCCCe-EEEEcCCC
Q psy15995 199 RMVVVGEGRERFGHVFMSETGT----------------SVGEISGQSKPINSCDFKPSRPFRIITGSEDNT-IAVFEGPP 261 (683)
Q Consensus 199 ~l~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i~iw~~~~ 261 (683)
++++++...+..+.+|+..++. .+..+.+|...|++++|+|++.+ |++++.|++ |++||+++
T Consensus 149 ~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~-l~s~s~d~~~v~iwd~~~ 227 (355)
T 3vu4_A 149 LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDM-VATCSQDGTIIRVFKTED 227 (355)
T ss_dssp EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSE-EEEEETTCSEEEEEETTT
T ss_pred EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCE-EEEEeCCCCEEEEEECCC
Confidence 7777644445558999988765 26788999999999999999995 999999998 99999999
Q ss_pred Cceeeecc-c-cccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEE--ecc------------------C-CccccC
Q psy15995 262 FKFKMTKQ-E-HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVS--ELG------------------N-PAHKGG 318 (683)
Q Consensus 262 ~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~------------------~-~~~~~~ 318 (683)
++.+..+. + |...|.+++|+|++++|++++.|++|++||++.+.... .+. . ......
T Consensus 228 ~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (355)
T 3vu4_A 228 GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVR 307 (355)
T ss_dssp CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCC
T ss_pred CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCC
Confidence 99999988 5 99999999999999999999999999999997653211 110 0 011223
Q ss_pred eEEEEEccCCCEEEEEECCCcEEEEECCCCc
Q psy15995 319 VYAVAWKPDGTQLLTASGDKTCKLWDIETKS 349 (683)
Q Consensus 319 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 349 (683)
...++|+++++.+++++.||.+++|++..+.
T Consensus 308 ~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 308 GCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred ceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 4678999999999999999999999986544
No 120
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=2.1e-31 Score=241.50 Aligned_cols=276 Identities=10% Similarity=0.048 Sum_probs=206.2
Q ss_pred CCCCCe--EEEecCCeEEEEeCCCC---cccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCccccccccccc
Q psy15995 53 DPKGKN--FLYTNGNSVIIRNIENP---AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHP 127 (683)
Q Consensus 53 s~~~~~--l~~~~~~~i~v~~~~~~---~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~ 127 (683)
.+..+. +++++...|.+|+..++ +.++++++|+.+|..++++||-.-|+...-. .+.
T Consensus 49 ~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~----------------- 110 (356)
T 2w18_A 49 RAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG-NLE----------------- 110 (356)
T ss_dssp ----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC-SSS-----------------
T ss_pred cCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec-ccc-----------------
Confidence 344443 55668889999999999 8899999999999999999987544433211 110
Q ss_pred CCCCcccceeeeeecceeeeEeecc----ceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEE
Q psy15995 128 IGGPIKDIGTLLSLTSIRNILVLSI----GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV 203 (683)
Q Consensus 128 ~~~~~~~~~~~~~~~~i~~~~~s~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 203 (683)
...|+.++++|| ++++++++.+ +.+|++.+++.+.. ....|.+.|..++|+|+|+.+.
T Consensus 111 -------------~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~s-s~~g~d~~V~~~~~s~dG~~~~-- 172 (356)
T 2w18_A 111 -------------IREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSS-SGTLSDQQVEVMTFAEDGGGKE-- 172 (356)
T ss_dssp -------------EEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEE-ESSSTTCEEEEEEECTTSCEEE--
T ss_pred -------------ccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEe-cccCCCCcEEEEEECCCCceee--
Confidence 167899999999 9999998854 88899877654332 2345678888888888877655
Q ss_pred ecCCceEEEEEEccCCCceeeeecCCcCeEEEEeec---CCCeEEEEeeCCCeEEEEcCCCCceeeeccccc---cCeEE
Q psy15995 204 GEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKP---SRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS---RFVQA 277 (683)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~---~~v~~ 277 (683)
.+.+|...++.++|+| +++ +|++++.|++|++||+.+++.+..+.+|. ..+.+
T Consensus 173 --------------------s~~~~~~~v~~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~ 231 (356)
T 2w18_A 173 --------------------NQFLMPPEETILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCH 231 (356)
T ss_dssp --------------------EEEECCCSSCEEEEEEEETSTT-EEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEE
T ss_pred --------------------eeccCCCceeeEEeeccCCCCc-eEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEE
Confidence 3457888888999998 566 59999999999999999999999998654 46788
Q ss_pred EEECCCCCEE------------EEEcCCCcEEEEeCCCCeeEEecc---CCccccCeEEEEEccCCCEEEEEECCCcEEE
Q psy15995 278 VRYSPSGSHF------------ASAGFDGKVFLYDGASADLVSELG---NPAHKGGVYAVAWKPDGTQLLTASGDKTCKL 342 (683)
Q Consensus 278 ~~~~~~~~~l------------~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 342 (683)
++|+|+|+++ ++|+.|++|++||..+++.+..+. ..+|...+.+..++ +..+++++.|++|+|
T Consensus 232 vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkI 309 (356)
T 2w18_A 232 KAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAI 309 (356)
T ss_dssp EEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred EEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEE
Confidence 8999999876 567789999999999998876542 12355555544444 778999999999999
Q ss_pred EECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEE-EEEEeCCCCEEEEEe
Q psy15995 343 WDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPIT-ALALSPDRGTVFTGS 421 (683)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~ 421 (683)
||+.+++.+.++ .+|...+. .++|+|||++|++|+
T Consensus 310 WDl~tGk~l~tL--------------------------------------------~gH~~~vvs~vafSPDG~~LaSGS 345 (356)
T 2w18_A 310 WDLLLGQCTALL--------------------------------------------PPVSDQHWSFVKWSGTDSHLLAGQ 345 (356)
T ss_dssp EETTTCSEEEEE--------------------------------------------CCC--CCCCEEEECSSSSEEEEEC
T ss_pred EECCCCcEEEEe--------------------------------------------cCCCCCeEEEEEECCCCCEEEEEE
Confidence 999998876543 45666544 589999999999999
Q ss_pred CCCcEEEEcC
Q psy15995 422 HDGFITRWNA 431 (683)
Q Consensus 422 ~dg~i~~w~~ 431 (683)
.|++|++||+
T Consensus 346 ~D~TIklWd~ 355 (356)
T 2w18_A 346 KDGNIFVYHY 355 (356)
T ss_dssp TTSCEEEEEE
T ss_pred CCCcEEEecC
Confidence 9999999985
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-31 Score=258.69 Aligned_cols=247 Identities=13% Similarity=0.087 Sum_probs=191.8
Q ss_pred EECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecC
Q psy15995 279 RYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGN 358 (683)
Q Consensus 279 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 358 (683)
.+.++++.+++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|+.+++|+...
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~----------- 104 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT----TPNPRTGGEHPA---IISRGPCNRLLLLYPGN----------- 104 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE----EECCCTTCCCCS---EEEECSTTEEEEEETTT-----------
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe----cCCceeeeeCCc---eEEecCCCeEEEEEccC-----------
Confidence 345678899999999999999999998888774 466788888887 99999999999999874
Q ss_pred cceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeC--CCCEEEEEeCCCcEEEEcCCCCCc
Q psy15995 359 QVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSP--DRGTVFTGSHDGFITRWNAKTGEN 436 (683)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~w~~~~~~~ 436 (683)
.+.+|+............+|..+|.+++|+| +++++++++.||.|++||+++++.
T Consensus 105 -----------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~ 161 (343)
T 3lrv_A 105 -----------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ 161 (343)
T ss_dssp -----------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE
T ss_pred -----------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE
Confidence 2334555543322223336778999999999 999999999999999999987765
Q ss_pred ceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceee
Q psy15995 437 DRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVS 516 (683)
Q Consensus 437 ~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (683)
.......
T Consensus 162 ~~~~~~~------------------------------------------------------------------------- 168 (343)
T 3lrv_A 162 YIVHSAK------------------------------------------------------------------------- 168 (343)
T ss_dssp EEEECCC-------------------------------------------------------------------------
T ss_pred EEEEecC-------------------------------------------------------------------------
Confidence 3332111
Q ss_pred eecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccC-cceeecCCcCeeEEEECCCCCEEEEEeCCCeEEEEECCC
Q psy15995 517 SLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLS-PKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 595 (683)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~ 595 (683)
+...+.+++++|++.+|++|+.||.|++||+.+++.. .....+|..+|++++|+|++.+|++++ ++.|++||+.+
T Consensus 169 ---~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~ 244 (343)
T 3lrv_A 169 ---SDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRK 244 (343)
T ss_dssp ---SSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTS
T ss_pred ---CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCC
Confidence 1224788999999999999999999999999998876 333334899999999999999999999 45999999998
Q ss_pred Cccccccc-eeeecccEE--EEEecCCCCeEEEeec-CCcEEEEeCCCCcee
Q psy15995 596 FELAHNKE-WGFHSAKVN--CVAWSPDSALVASGSL-DTTIIIWSLASPAKH 643 (683)
Q Consensus 596 ~~~~~~~~-~~~h~~~v~--~~~~s~d~~~l~~~~~-d~~v~iw~~~~~~~~ 643 (683)
++...... +..|...+. +++|+|++++|++++. |+.|++|++.+....
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~ 296 (343)
T 3lrv_A 245 DVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN 296 (343)
T ss_dssp STTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS
T ss_pred CCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc
Confidence 87654322 111333444 6999999999999998 999999999766543
No 122
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=5e-31 Score=262.18 Aligned_cols=251 Identities=21% Similarity=0.328 Sum_probs=209.3
Q ss_pred cccCcccceEEEEECCC-CcEEEEecCCCCEEEEeCCC----------cccccccccccCCCCcccceeeeeecceeeeE
Q psy15995 80 IYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVN----------KEHILKNEFHPIGGPIKDIGTLLSLTSIRNIL 148 (683)
Q Consensus 80 ~~~~h~~~v~~~~~s~d-~~~las~~~dg~i~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 148 (683)
...+|.+.|++++|+|+ +++||+++.||.|++||+.+ ...+..+..| ...+.+++
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h--------------~~~v~~l~ 188 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH--------------QKEGYGLS 188 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECC--------------SSCCCCEE
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCC--------------CCCeEEEE
Confidence 35579999999999997 78999999999999999976 2333333333 26789999
Q ss_pred eeccce-EEEeecCCccEEEEecccccee-----eeccccccCCCeeEEEEcC-CCCeEEEEecCCceEEEEEEccCC--
Q psy15995 149 VLSIGF-YIASGDISGKVRIWDTVNKEHI-----LKNEFHPIGGPIKDIAWSP-DNQRMVVVGEGRERFGHVFMSETG-- 219 (683)
Q Consensus 149 ~s~~~~-~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~~~~~~~~~~~~~-- 219 (683)
|+|++. +|++++.||.|++||+.++... ....+..|...|.+++|+| ++..+++++.++. +.+|+..++
T Consensus 189 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~--i~i~d~~~~~~ 266 (430)
T 2xyi_A 189 WNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK--LMIWDTRNNNT 266 (430)
T ss_dssp ECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSE--EEEEETTCSCS
T ss_pred eCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCe--EEEEECCCCCC
Confidence 999998 9999999999999999874221 1234557788999999999 5566666665543 788998876
Q ss_pred -CceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCC-CceeeeccccccCeEEEEECCCCC-EEEEEcCCCcE
Q psy15995 220 -TSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP-FKFKMTKQEHSRFVQAVRYSPSGS-HFASAGFDGKV 296 (683)
Q Consensus 220 -~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i 296 (683)
+.+..+..|...|++++|+|++++++++++.||.|++||++. .+.+..+..|...|.+++|+|+++ +|++++.||.|
T Consensus 267 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i 346 (430)
T 2xyi_A 267 SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 346 (430)
T ss_dssp SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCC
T ss_pred CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcE
Confidence 577788899999999999999987799999999999999987 556778888999999999999995 79999999999
Q ss_pred EEEeCCC--------------CeeEEeccCCccccCeEEEEEccCCC-EEEEEECCCcEEEEECCCC
Q psy15995 297 FLYDGAS--------------ADLVSELGNPAHKGGVYAVAWKPDGT-QLLTASGDKTCKLWDIETK 348 (683)
Q Consensus 297 ~iw~~~~--------------~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 348 (683)
++||+.. .+.+..+.. |...|.+++|+|+++ ++++++.||.|++|++...
T Consensus 347 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 347 HVWDLSKIGEEQSTEDAEDGPPELLFIHGG--HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEEEGGGTTCCCCHHHHHHCCTTEEEECCC--CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEeCCCCccccCccccccCCcceEEEcCC--CCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 9999986 244555543 889999999999999 8999999999999998754
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-31 Score=256.15 Aligned_cols=277 Identities=13% Similarity=0.048 Sum_probs=219.8
Q ss_pred EEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEec
Q psy15995 91 AKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDT 170 (683)
Q Consensus 91 ~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~ 170 (683)
..+.+|+++|++|+.||.|++||+.+++.+..+. ...+..+.++|+ +++++.|++|++|+.
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~----------------~~~v~~~~~~~~---~~s~s~D~~i~~w~~ 102 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT----------------TPNPRTGGEHPA---IISRGPCNRLLLLYP 102 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE----------------EECCCTTCCCCS---EEEECSTTEEEEEET
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe----------------cCCceeeeeCCc---eEEecCCCeEEEEEc
Confidence 3455788999999999999999999987776654 155778888888 999999999999997
Q ss_pred cccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeee-cCCcCeEEEEeec--CCCeEEEE
Q psy15995 171 VNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS-GQSKPINSCDFKP--SRPFRIIT 247 (683)
Q Consensus 171 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~~l~~ 247 (683)
... ..+|+..+++.+..+. +|...|.+++|+| ++++ +++
T Consensus 103 ~~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s 144 (343)
T 3lrv_A 103 GNQ-------------------------------------ITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEY-FIW 144 (343)
T ss_dssp TTE-------------------------------------EEEEETTTCCEEEEEECCCSSCEEEEECCC---CCE-EEE
T ss_pred cCc-------------------------------------eEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCE-EEE
Confidence 641 3445555555444443 6778999999999 8885 999
Q ss_pred eeCCCeEEEEcCCCCceeeecc-ccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeE-EeccCCccccCeEEEEEc
Q psy15995 248 GSEDNTIAVFEGPPFKFKMTKQ-EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLV-SELGNPAHKGGVYAVAWK 325 (683)
Q Consensus 248 ~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~i~~~~~~ 325 (683)
++.||+|++||+++++...... .|...+.+++|+|++.+|++|+.||.|++||+++++.. ..+.. .|..+|.+++|+
T Consensus 145 ~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~l~fs 223 (343)
T 3lrv_A 145 ADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV-DEEAKIKEVKFA 223 (343)
T ss_dssp EETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC-CTTSCEEEEEEC
T ss_pred EeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec-cCCCCEEEEEEe
Confidence 9999999999999998876653 45568999999999999999999999999999999877 55542 388999999999
Q ss_pred cCCCEEEEEECCCcEEEEECCCCceeeEEEec--Cccee--ceEEEEecCCEEEEEec-CCcEEEEecCCCCcceeeeee
Q psy15995 326 PDGTQLLTASGDKTCKLWDIETKSVVSEFIMG--NQVED--QQVSCLWQGDYLLTVSL-SGFISYLDVNNPSTPIRVIKG 400 (683)
Q Consensus 326 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~l~~~~~-~g~i~~~~~~~~~~~~~~~~~ 400 (683)
|++.+|++++ ++.|++||+++++....+... +.... ..+.++|+++++++++. ++.+++|+..........
T Consensus 224 ~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~--- 299 (343)
T 3lrv_A 224 DNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK--- 299 (343)
T ss_dssp TTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE---
T ss_pred CCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe---
Confidence 9999999999 459999999988765443221 11111 35888899999999998 999999999765443222
Q ss_pred ccccEEEEEEeC---CCCEEEEEeCCCcEEEEcC
Q psy15995 401 HNKPITALALSP---DRGTVFTGSHDGFITRWNA 431 (683)
Q Consensus 401 ~~~~v~~~~~~~---~~~~l~~~~~dg~i~~w~~ 431 (683)
.++..++|.+ +.+.+++++.|+.+.++-.
T Consensus 300 --~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 300 --DEESALCLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp --EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred --cCceeEecCccccccceeEEEecCCceEEEEe
Confidence 5678888988 8899999999999988753
No 124
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=100.00 E-value=1.2e-30 Score=264.11 Aligned_cols=334 Identities=13% Similarity=0.132 Sum_probs=259.7
Q ss_pred eeCCCCCeEEEe-cCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeC--CCccccccccccc
Q psy15995 51 GGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDT--VNKEHILKNEFHP 127 (683)
Q Consensus 51 ~~s~~~~~l~~~-~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~--~~~~~~~~~~~~~ 127 (683)
+++|+++++++. .++.|.+||..+++++.++..+.. +.+++|||||++|++++.|++|.+||+ .+++.+.++...
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g- 221 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG- 221 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC-
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC-
Confidence 489999888877 578999999999999988883333 899999999999999999999999999 777666555432
Q ss_pred CCCCcccceeeeeecceeeeEeec----cceEEEeecC-CccEEEEeccccceeeeccccc--------c-CCCeeEEEE
Q psy15995 128 IGGPIKDIGTLLSLTSIRNILVLS----IGFYIASGDI-SGKVRIWDTVNKEHILKNEFHP--------I-GGPIKDIAW 193 (683)
Q Consensus 128 ~~~~~~~~~~~~~~~~i~~~~~s~----~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~--------~-~~~i~~~~~ 193 (683)
..+..++|+| ||++|++++. +++|.+||..+++.+......+ | ...+.++.+
T Consensus 222 --------------~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~ 287 (543)
T 1nir_A 222 --------------IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIA 287 (543)
T ss_dssp --------------SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEE
T ss_pred --------------CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEE
Confidence 5678999999 9999999885 8999999999988766554322 1 237899999
Q ss_pred cCCCCeEEEEecCCceEEEEEEccCCCcee--eeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccc-
Q psy15995 194 SPDNQRMVVVGEGRERFGHVFMSETGTSVG--EISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE- 270 (683)
Q Consensus 194 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~- 270 (683)
+|++..+++...... .+.+++..+.+.+. .+ .+...+..+.|+|+++++++++..+++|.+||..++++...+..
T Consensus 288 s~~~~~~~vs~~~~g-~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g 365 (543)
T 1nir_A 288 SHEHPEFIVNVKETG-KVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG 365 (543)
T ss_dssp CSSSSEEEEEETTTT-EEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred CCCCCEEEEEECCCC-eEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccC
Confidence 999888777665443 36777777655443 33 35677889999999998666777799999999999998887763
Q ss_pred ---cccCeEEEEECCC-CCEEEEEc-CCCcEEEEeCCC-------CeeEEeccCCccccCeEEEEEccCCCEEEEEE---
Q psy15995 271 ---HSRFVQAVRYSPS-GSHFASAG-FDGKVFLYDGAS-------ADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS--- 335 (683)
Q Consensus 271 ---~~~~v~~~~~~~~-~~~l~~~~-~dg~i~iw~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--- 335 (683)
|......+ ++|+ +..++++. .|++|.+||..+ .+.++.+.. |...+..++++|++++|++++
T Consensus 366 ~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~--~g~~~~~v~~~pdg~~l~v~~~~~ 442 (543)
T 1nir_A 366 KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG--QGGGSLFIKTHPKSSHLYVDTTFN 442 (543)
T ss_dssp SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC--SCSCCCCEECCTTCCEEEECCTTC
T ss_pred CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc--CCCCceEEEcCCCCCcEEEecCCC
Confidence 55444443 4677 55666665 579999999988 888888876 777889999999999999987
Q ss_pred ----CCCcEEEEECCCCceeeE-EEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEE
Q psy15995 336 ----GDKTCKLWDIETKSVVSE-FIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALAL 410 (683)
Q Consensus 336 ----~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~ 410 (683)
.+++|.+||+.+++...+ +.... ..-+..+...+..+.|
T Consensus 443 ~~~~~~~~v~v~d~~~~~~~~~~~~v~~------------------------------------~~~~~~~~~~~~~~~~ 486 (543)
T 1nir_A 443 PDARISQSVAVFDLKNLDAKYQVLPIAE------------------------------------WADLGEGAKRVVQPEY 486 (543)
T ss_dssp SSHHHHTCEEEEETTCTTSCCEEECHHH------------------------------------HHCCCSSCCEEEEEEE
T ss_pred CCcccCceEEEEECCCCCCCeEEeechh------------------------------------hcccCCCCCceEeccC
Confidence 267999999998875422 11000 0012335677899999
Q ss_pred eCCCCEEEEEe-----CCCcEEEEcCCCCCcceecc
Q psy15995 411 SPDRGTVFTGS-----HDGFITRWNAKTGENDRVQG 441 (683)
Q Consensus 411 ~~~~~~l~~~~-----~dg~i~~w~~~~~~~~~~~~ 441 (683)
+|+|+.++++. .++.|.+||..+++......
T Consensus 487 ~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 487 NKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp CSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 99999998663 47999999999998877664
No 125
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-31 Score=282.95 Aligned_cols=257 Identities=20% Similarity=0.265 Sum_probs=210.7
Q ss_pred eeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCC--CCceeeeccccccCeEEEEECCC--CCEEEEEcCCCcEEE
Q psy15995 223 GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP--PFKFKMTKQEHSRFVQAVRYSPS--GSHFASAGFDGKVFL 298 (683)
Q Consensus 223 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i 298 (683)
..+.+|.+.|++++|+|++++ +++++.||.|++||.. +++....+.+|...|.+++|+|+ +++|++++.||.|++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~-latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -----CCCCEEEECCCSSSCC-EEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eecccCcceeEEEEECCCCCe-EEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 457899999999999999995 9999999999999987 56777888999999999999998 899999999999999
Q ss_pred EeCCCCe--eEEeccCCccccCeEEEEEccC--CCEEEEEECCCcEEEEECCCCceee-EEEecCcceeceEEEEe----
Q psy15995 299 YDGASAD--LVSELGNPAHKGGVYAVAWKPD--GTQLLTASGDKTCKLWDIETKSVVS-EFIMGNQVEDQQVSCLW---- 369 (683)
Q Consensus 299 w~~~~~~--~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~---- 369 (683)
||+.+++ ....+. .|...|.+++|+|+ ++.+++++.||.|++||++++.... .....+......+.++|
T Consensus 82 wd~~~~~~~~~~~~~--~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 82 WKEENGRWSQIAVHA--VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 159 (753)
T ss_dssp EEEETTEEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--
T ss_pred EECCCCccccccccc--CCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccc
Confidence 9999987 444554 49999999999999 9999999999999999999874332 22344566677788887
Q ss_pred ---------cCCEEEEEecCCcEEEEecCCCC---cceeeeeeccccEEEEEEeCC---CCEEEEEeCCCcEEEEcCCCC
Q psy15995 370 ---------QGDYLLTVSLSGFISYLDVNNPS---TPIRVIKGHNKPITALALSPD---RGTVFTGSHDGFITRWNAKTG 434 (683)
Q Consensus 370 ---------~~~~l~~~~~~g~i~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~w~~~~~ 434 (683)
++..+++++.+|.|++||+.... .....+.+|...|++++|+|+ ++++++++.||.|++||+.++
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence 58999999999999999998754 345567789999999999999 899999999999999999876
Q ss_pred CcceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCce
Q psy15995 435 ENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAK 514 (683)
Q Consensus 435 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (683)
........
T Consensus 240 ~~~~~~~~------------------------------------------------------------------------ 247 (753)
T 3jro_A 240 QGPWKKTL------------------------------------------------------------------------ 247 (753)
T ss_dssp SSCCBCCB------------------------------------------------------------------------
T ss_pred CCcceeEE------------------------------------------------------------------------
Confidence 43211100
Q ss_pred eeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCc
Q psy15995 515 VSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKS 554 (683)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 554 (683)
.....+...+.+++++|+++++++++.||.|++|++....
T Consensus 248 ~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 248 LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred eccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 0001133467889999999999999999999999998643
No 126
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=1.1e-29 Score=252.39 Aligned_cols=267 Identities=14% Similarity=0.236 Sum_probs=213.3
Q ss_pred cceeeeeecceeeeEeecc-ceEEEeecCCccEEEEeccc--------cceeeeccccccCCCeeEEEEcCCCC-eEEEE
Q psy15995 134 DIGTLLSLTSIRNILVLSI-GFYIASGDISGKVRIWDTVN--------KEHILKNEFHPIGGPIKDIAWSPDNQ-RMVVV 203 (683)
Q Consensus 134 ~~~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~i~iwd~~~--------~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~ 203 (683)
......+...|.+++|+|+ +.+||+++.+|.|++||+.+ ++......+..|...+.+++|+|++. +++++
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 3445666788999999997 78999999999999999986 22233455667889999999999998 77777
Q ss_pred ecCCceEEEEEEccCCCc-------eeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCC---ceeeecccccc
Q psy15995 204 GEGRERFGHVFMSETGTS-------VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF---KFKMTKQEHSR 273 (683)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~---~~~~~~~~~~~ 273 (683)
+.++. +.+|+...+.. ...+.+|...|.+++|+|++...+++++.|+.|++||+++. +....+..|..
T Consensus 201 ~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 278 (430)
T 2xyi_A 201 SDDHT--ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA 278 (430)
T ss_dssp CTTSC--EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred eCCCe--EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence 66544 78899887432 45567899999999999966557999999999999999877 56677778999
Q ss_pred CeEEEEECCCCC-EEEEEcCCCcEEEEeCCC-CeeEEeccCCccccCeEEEEEccCCC-EEEEEECCCcEEEEECCCCce
Q psy15995 274 FVQAVRYSPSGS-HFASAGFDGKVFLYDGAS-ADLVSELGNPAHKGGVYAVAWKPDGT-QLLTASGDKTCKLWDIETKSV 350 (683)
Q Consensus 274 ~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~ 350 (683)
.|++++|+|+++ ++++++.||.|++||+++ ...+..+.. |...|.+++|+|+++ +|++++.|+.|++||+.....
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~--h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~ 356 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES--HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC--CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec--CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence 999999999987 788999999999999988 456666654 899999999999985 689999999999999986432
Q ss_pred eeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCC-EEEEEeCCCcEEEE
Q psy15995 351 VSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRW 429 (683)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~w 429 (683)
........ ......+....+|...|++++|+|+++ ++++++.||.|++|
T Consensus 357 ~~~~~~~~------------------------------~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw 406 (430)
T 2xyi_A 357 EQSTEDAE------------------------------DGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406 (430)
T ss_dssp CCCHHHHH------------------------------HCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred ccCccccc------------------------------cCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEe
Confidence 11000000 000123345567899999999999999 89999999999999
Q ss_pred cCCCC
Q psy15995 430 NAKTG 434 (683)
Q Consensus 430 ~~~~~ 434 (683)
++...
T Consensus 407 ~~~~~ 411 (430)
T 2xyi_A 407 QMAEN 411 (430)
T ss_dssp EECHH
T ss_pred Ecccc
Confidence 98754
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=6.9e-30 Score=231.59 Aligned_cols=271 Identities=11% Similarity=0.052 Sum_probs=197.8
Q ss_pred EEEEeeCCCeEEEEcCCCC---ceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeE
Q psy15995 244 RIITGSEDNTIAVFEGPPF---KFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVY 320 (683)
Q Consensus 244 ~l~~~~~d~~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~ 320 (683)
.++++++ ..|++|+..+. +.+++...|+.+|..+.+.||..-|++..- | . -+...|.
T Consensus 56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~----------------~--~~~~~v~ 115 (356)
T 2w18_A 56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVAL-G----------------N--LEIREIR 115 (356)
T ss_dssp EEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEE-C----------------S--SSEEEEE
T ss_pred EEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeee-c----------------c--ccccceE
Confidence 4666665 78999998888 889999999999999999998654443321 1 1 1667889
Q ss_pred EEEEccC----CCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEe--cCCcEEEEecCCCCcc
Q psy15995 321 AVAWKPD----GTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVS--LSGFISYLDVNNPSTP 394 (683)
Q Consensus 321 ~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~g~i~~~~~~~~~~~ 394 (683)
.++++|| ++.+++++.+ +++|++.+++. +.++. .++.|++|++....+.
T Consensus 116 sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~l-----------------------v~ss~~g~d~~V~~~~~s~dG~~ 170 (356)
T 2w18_A 116 ALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRL-----------------------VSSSGTLSDQQVEVMTFAEDGGG 170 (356)
T ss_dssp EECC------CCEEEEEEEEE--EEEEEETTTEE-----------------------EEEESSSTTCEEEEEEECTTSCE
T ss_pred EEEECCCccccccEEEeCCCe--EEEEecCCCcE-----------------------EEecccCCCCcEEEEEECCCCce
Confidence 9999999 9999998754 78887754433 22322 4899999999776777
Q ss_pred eeeeeeccccEEEEEEeC---CCCEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEe
Q psy15995 395 IRVIKGHNKPITALALSP---DRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVD 471 (683)
Q Consensus 395 ~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~ 471 (683)
+..+.+|...++.++|+| ++..|++++.|++|++||+.+++....+...+. .+.
T Consensus 171 ~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~-~v~---------------------- 227 (356)
T 2w18_A 171 KENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS-YQA---------------------- 227 (356)
T ss_dssp EEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC----C----------------------
T ss_pred eeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc-cee----------------------
Confidence 778889999999999999 789999999999999999999998777642221 110
Q ss_pred CCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCE------------EEEE
Q psy15995 472 LSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGL------------VAVG 539 (683)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------l~~~ 539 (683)
.+.+++|+|++.+ +++|
T Consensus 228 ---------------------------------------------------~v~~vafSpdG~~lvs~s~~~~~w~laSG 256 (356)
T 2w18_A 228 ---------------------------------------------------SVCHKAYSEMGLLFIVLSHPCAKESESLR 256 (356)
T ss_dssp ---------------------------------------------------CCEEEEEEETTEEEEEEC-----------
T ss_pred ---------------------------------------------------eeEEEEECCCCCEEEEeccCCCcceeecc
Confidence 1233344444443 4678
Q ss_pred cCCCcEEEEEcCCCccCccee----ecCCcCeeEEEECCCCCEEEEEeCCCeEEEEECCCCccccccceeeecccEE-EE
Q psy15995 540 GADSKVHIYELNNKSLSPKAE----LDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVN-CV 614 (683)
Q Consensus 540 ~~dg~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~-~~ 614 (683)
+.|++|++||..+++...... .+|...+.+..+ ++.++|+++.|++|+|||+.+++++.... +|...+. ++
T Consensus 257 s~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~--gH~~~vvs~v 332 (356)
T 2w18_A 257 SPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLP--PVSDQHWSFV 332 (356)
T ss_dssp -CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEEC--CC--CCCCEE
T ss_pred CCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEec--CCCCCeEEEE
Confidence 889999999999887653322 234444444444 47899999999999999999999876543 3766554 68
Q ss_pred EecCCCCeEEEeecCCcEEEEeC
Q psy15995 615 AWSPDSALVASGSLDTTIIIWSL 637 (683)
Q Consensus 615 ~~s~d~~~l~~~~~d~~v~iw~~ 637 (683)
+|||||++|++|+.|++|+|||+
T Consensus 333 afSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 333 KWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EECSSSSEEEEECTTSCEEEEEE
T ss_pred EECCCCCEEEEEECCCcEEEecC
Confidence 99999999999999999999995
No 128
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=5.1e-30 Score=251.22 Aligned_cols=283 Identities=11% Similarity=0.082 Sum_probs=180.7
Q ss_pred CCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCcee-----eeccccccCeEEEEECC--------CCCEEEEEcCCC
Q psy15995 228 QSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK-----MTKQEHSRFVQAVRYSP--------SGSHFASAGFDG 294 (683)
Q Consensus 228 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~-----~~~~~~~~~v~~~~~~~--------~~~~l~~~~~dg 294 (683)
|........+.+++. .+++++.|++|++||.+.++.. ..+.+|.+.|.+++|+| |+++||+++.|+
T Consensus 88 ~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp ---------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred cCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 444444555566665 5999999999999998887543 35689999999999998 788999999999
Q ss_pred cEEEEeCCCCeeEEeccCCccccCeEEEEEccCCC-EEEEEECCCcEEEEECCCCceeeEEEecCcc-eeceEEEEecCC
Q psy15995 295 KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGT-QLLTASGDKTCKLWDIETKSVVSEFIMGNQV-EDQQVSCLWQGD 372 (683)
Q Consensus 295 ~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 372 (683)
+|++||+.++.....+.. |...+.+++|+|++. +|++++.|+.|++||+++++........... .........
T Consensus 167 tv~~Wd~~~~~~~~~~~~--~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~--- 241 (393)
T 4gq1_A 167 TLIIWRLTDEGPILAGYP--LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNT--- 241 (393)
T ss_dssp EEEEEEEETTEEEEEEEE--CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEES---
T ss_pred eEEEEECCCCceeeeecC--CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccc---
Confidence 999999988877766654 889999999999874 7999999999999999988765443221111 000111100
Q ss_pred EEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEe-CCCCEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEE
Q psy15995 373 YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALS-PDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGM 451 (683)
Q Consensus 373 ~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~ 451 (683)
.. ........+|...+.++.|+ |+++.+++++.|+.+++||+..++....+ ..+...+..+
T Consensus 242 -------~~----------~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l-~~~~~~~~~~ 303 (393)
T 4gq1_A 242 -------LP----------LVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEI-SDSTMKLGPK 303 (393)
T ss_dssp -------GG----------GC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------
T ss_pred -------cc----------ceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceE-eeecCccccE
Confidence 00 01112235688889999987 79999999999999999999877654443 2222222221
Q ss_pred EEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEcc
Q psy15995 452 KATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDH 531 (683)
Q Consensus 452 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (683)
.+..+. .............++|
T Consensus 304 ~~~~~~----------------------------------------------------------~~~~~~~~~~~~~~~~ 325 (393)
T 4gq1_A 304 NLLPNV----------------------------------------------------------QGISLFPSLLGACPHP 325 (393)
T ss_dssp CCSCSE----------------------------------------------------------EEECSSCCSSCCEECS
T ss_pred EEcccc----------------------------------------------------------ccccccCcceeEEEcc
Confidence 111000 0000011112223333
Q ss_pred --CCCEEEEEcCCCcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEeCCCeEEEEECC
Q psy15995 532 --EHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 594 (683)
Q Consensus 532 --~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~ 594 (683)
++.++++|+.||.|++||..+++... ....|..+|.+++|+|||++||+++++| +.+|.+.
T Consensus 326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~-~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 326 RYMDYFATAHSQHGLIQLINTYEKDSNS-IPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp SCTTEEEEEETTTTEEEEEETTCTTCCE-EEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEE-EecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 45567788899999999999887663 3456888999999999999999998766 6666653
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=1.9e-28 Score=248.06 Aligned_cols=332 Identities=11% Similarity=0.077 Sum_probs=252.4
Q ss_pred eecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeC--CCCeeEEeccCCc
Q psy15995 237 FKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDG--ASADLVSELGNPA 314 (683)
Q Consensus 237 ~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~--~~~~~~~~~~~~~ 314 (683)
++|++. .+++++.|++|.+||..+++.+..+..+.. +..++|+|+|++|++++.|+.|.+||+ .+++.+..+.
T Consensus 145 ~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~--- 219 (543)
T 1nir_A 145 LDLPNL-FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK--- 219 (543)
T ss_dssp CCGGGE-EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE---
T ss_pred cCCCCE-EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe---
Confidence 788776 588999999999999999999888874333 889999999999999999999999999 8888888876
Q ss_pred cccCeEEEEEcc----CCCEEEEEEC-CCcEEEEECCCCceeeEEEecC----------cceeceEEEEecCC-EEEEEe
Q psy15995 315 HKGGVYAVAWKP----DGTQLLTASG-DKTCKLWDIETKSVVSEFIMGN----------QVEDQQVSCLWQGD-YLLTVS 378 (683)
Q Consensus 315 ~~~~i~~~~~~~----~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~-~l~~~~ 378 (683)
+...+..++|+| |++++++++. ++.|.+||..+++.+..+.... ......+.+++++. ++++..
T Consensus 220 ~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~ 299 (543)
T 1nir_A 220 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 299 (543)
T ss_dssp CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence 455689999999 9999999885 8999999999999988876521 12345667777655 456666
Q ss_pred cCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEE-eCCCcEEEEcCCCCCcceeccCCCCcceeEEEEeCCe
Q psy15995 379 LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG-SHDGFITRWNAKTGENDRVQGAGHGNQINGMKATGEL 457 (683)
Q Consensus 379 ~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 457 (683)
.++.|.+||.............+...+..+.|+|++++++++ ..++.|.+||+.+++.......+.
T Consensus 300 ~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~------------- 366 (543)
T 1nir_A 300 ETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK------------- 366 (543)
T ss_dssp TTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS-------------
T ss_pred CCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCC-------------
Confidence 789999999987544332223456678889999999987655 458899999999887654432110
Q ss_pred EEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccC-CCEE
Q psy15995 458 LYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHE-HGLV 536 (683)
Q Consensus 458 l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l 536 (683)
.++......+ ++|+ +.++
T Consensus 367 ------------------------------------------------------------~ph~g~g~~~-~~p~~g~~~ 385 (543)
T 1nir_A 367 ------------------------------------------------------------TPHPGRGANF-VHPKYGPVW 385 (543)
T ss_dssp ------------------------------------------------------------SBCCTTCEEE-EETTTEEEE
T ss_pred ------------------------------------------------------------CCCCCCCccc-CCCCCccEE
Confidence 0111111122 3566 5566
Q ss_pred EEEc-CCCcEEEEEcCC-------CccCcceeecCCcCeeEEEECCCCCEEEEEe-------CCCeEEEEECCCCccccc
Q psy15995 537 AVGG-ADSKVHIYELNN-------KSLSPKAELDHLGPVTDCSFSPSNEYLVASD-------AHRKVVLYRVPDFELAHN 601 (683)
Q Consensus 537 ~~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------~d~~i~i~~~~~~~~~~~ 601 (683)
+++. .|++|.+||..+ .+.+.... .|...+..++|+||+++|++++ .+++|.+||+.+++....
T Consensus 386 ~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~-~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~ 464 (543)
T 1nir_A 386 STSHLGDGSISLIGTDPKNHPQYAWKKVAELQ-GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQ 464 (543)
T ss_dssp EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE-CSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCE
T ss_pred EeccCCCceEEEEEeCCCCCchhcCeEEEEEE-cCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeE
Confidence 6665 579999999987 44432222 3667788999999999999987 267999999999886522
Q ss_pred cc-------eeeecccEEEEEecCCCCeEEEee-----cCCcEEEEeCCCCceeeEeec
Q psy15995 602 KE-------WGFHSAKVNCVAWSPDSALVASGS-----LDTTIIIWSLASPAKHIIIKN 648 (683)
Q Consensus 602 ~~-------~~~h~~~v~~~~~s~d~~~l~~~~-----~d~~v~iw~~~~~~~~~~~~~ 648 (683)
.. ...+...+..++|+|||+.|+++. .|+.|.|||..++++..+++.
T Consensus 465 ~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 523 (543)
T 1nir_A 465 VLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 523 (543)
T ss_dssp EECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred EeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecC
Confidence 21 112567899999999999988763 479999999999999888864
No 130
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=2.7e-30 Score=253.13 Aligned_cols=258 Identities=14% Similarity=0.089 Sum_probs=181.3
Q ss_pred eeeEeeccceEEEeecCCccEEEEeccccceee---eccccccCCCeeEEEEcC--------CCCeEEEEecCCceEEEE
Q psy15995 145 RNILVLSIGFYIASGDISGKVRIWDTVNKEHIL---KNEFHPIGGPIKDIAWSP--------DNQRMVVVGEGRERFGHV 213 (683)
Q Consensus 145 ~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~~~~~i~~~~~s~--------~~~~l~~~~~~~~~~~~~ 213 (683)
....+++++.+||+++.|++|++||..+++... ...+.+|.+.|.+++|+| |+++|++++.++. +++
T Consensus 93 ~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t--v~~ 170 (393)
T 4gq1_A 93 NVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT--LII 170 (393)
T ss_dssp ----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE--EEE
T ss_pred ceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe--EEE
Confidence 344677788999999999999999999876532 234678999999999998 8899999998764 789
Q ss_pred EEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeee-------------------------c
Q psy15995 214 FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT-------------------------K 268 (683)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~-------------------------~ 268 (683)
|+..++..+..+.+|...|.+++|+|++..+|++++.|++|++||+.+++.... .
T Consensus 171 Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 250 (393)
T 4gq1_A 171 WRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS 250 (393)
T ss_dssp EEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-----
T ss_pred EECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec
Confidence 999999999999999999999999999876799999999999999887654322 2
Q ss_pred cccccCeEEEEEC-CCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCC
Q psy15995 269 QEHSRFVQAVRYS-PSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET 347 (683)
Q Consensus 269 ~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 347 (683)
.+|...+.++.|+ |+++.+++++.|+.+++||+..++....+.. |...+..+.+.|+.+.+...........+
T Consensus 251 ~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 324 (393)
T 4gq1_A 251 SGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISD--STMKLGPKNLLPNVQGISLFPSLLGACPH---- 324 (393)
T ss_dssp -CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------------CCSCSEEEECSSCCSSCCEEC----
T ss_pred ccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEee--ecCccccEEEccccccccccCcceeEEEc----
Confidence 3577788899986 7999999999999999999998887777654 76777777777664332211111000000
Q ss_pred CceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEE
Q psy15995 348 KSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFIT 427 (683)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 427 (683)
...++.++++++.+|.|++||...+. .......|..+|.+++|+|||++||+++.+| +.
T Consensus 325 -------------------~~~~~~~~~sgs~Dg~V~lwd~~~~~-~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~ 383 (393)
T 4gq1_A 325 -------------------PRYMDYFATAHSQHGLIQLINTYEKD-SNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VL 383 (393)
T ss_dssp -------------------SSCTTEEEEEETTTTEEEEEETTCTT-CCEEEEECSSCEEEEEECTTSSEEEEEESSE-EE
T ss_pred -------------------cCCCCEEEEEECCCCEEEEEECCCCc-EEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eE
Confidence 01133456667778888888887744 4455667889999999999999999998776 55
Q ss_pred EEcC
Q psy15995 428 RWNA 431 (683)
Q Consensus 428 ~w~~ 431 (683)
+|.+
T Consensus 384 lvrL 387 (393)
T 4gq1_A 384 LTRL 387 (393)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=6.2e-28 Score=237.45 Aligned_cols=300 Identities=11% Similarity=0.103 Sum_probs=226.6
Q ss_pred CcCeEEEEeecCCCeEEEEee----CCC----eEEEEcC--CCCcee--eeccccccCeEEEEECC--------------
Q psy15995 229 SKPINSCDFKPSRPFRIITGS----EDN----TIAVFEG--PPFKFK--MTKQEHSRFVQAVRYSP-------------- 282 (683)
Q Consensus 229 ~~~v~~~~~~~~~~~~l~~~~----~d~----~i~iw~~--~~~~~~--~~~~~~~~~v~~~~~~~-------------- 282 (683)
...+....|.+.+...+++|+ .+| .+++||+ .+++.+ ..+.+|...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 346777888888876677776 467 8999999 888877 45778888888777765
Q ss_pred CCCEEEEEcCC------CcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCC---cEEEEECCCCceeeE
Q psy15995 283 SGSHFASAGFD------GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK---TCKLWDIETKSVVSE 353 (683)
Q Consensus 283 ~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~ 353 (683)
.+..++.++.+ +.|++||...+. ...+.. |...+.+++|+||+++|++++.++ .|++||+.+++..
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~~--~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-- 216 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVHR--SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-- 216 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEEE--ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE--
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCCCC-CEEEeC--CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE--
Confidence 15566666554 799999987544 444443 888999999999999999999875 8999999887642
Q ss_pred EEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEE-EEeCCCc--EEEEc
Q psy15995 354 FIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVF-TGSHDGF--ITRWN 430 (683)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~--i~~w~ 430 (683)
.+..|...+.+++|+|||+.|+ +++.++. |++||
T Consensus 217 -------------------------------------------~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d 253 (415)
T 2hqs_A 217 -------------------------------------------QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD 253 (415)
T ss_dssp -------------------------------------------EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred -------------------------------------------EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEE
Confidence 1234567889999999999888 6666654 88889
Q ss_pred CCCCCcceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEe
Q psy15995 431 AKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVE 510 (683)
Q Consensus 431 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (683)
+.+++..... .+
T Consensus 254 ~~~~~~~~l~--~~------------------------------------------------------------------ 265 (415)
T 2hqs_A 254 LASGQIRQVT--DG------------------------------------------------------------------ 265 (415)
T ss_dssp TTTCCEEECC--CC------------------------------------------------------------------
T ss_pred CCCCCEEeCc--CC------------------------------------------------------------------
Confidence 8776542221 11
Q ss_pred CCceeeeecCCCCCcEEEEccCCCEEEEEcC-CC--cEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEeCC--
Q psy15995 511 NGAKVSSLPIDYEPSSISLDHEHGLVAVGGA-DS--KVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH-- 585 (683)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-- 585 (683)
...+.+++|+||+++|++++. ++ .|++||+.+++.. ....+...+.+++|+|||++|++++.+
T Consensus 266 ----------~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~--~l~~~~~~~~~~~~spdG~~l~~~~~~~g 333 (415)
T 2hqs_A 266 ----------RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ--RITWEGSQNQDADVSSDGKFMVMVSSNGG 333 (415)
T ss_dssp ----------SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE--ECCCSSSEEEEEEECTTSSEEEEEEECSS
T ss_pred ----------CCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE--EEecCCCcccCeEECCCCCEEEEEECcCC
Confidence 123567889999998888876 44 6777888877643 222356778999999999999988764
Q ss_pred -CeEEEEECCCCccccccceeeecccEEEEEecCCCCeEEEeecCC---cEEEEeCCCCceeeEeecCCCCCCeeEEEEc
Q psy15995 586 -RKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDT---TIIIWSLASPAKHIIIKNAHPQSQITRLQWL 661 (683)
Q Consensus 586 -~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~---~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~~ 661 (683)
..|++||+.+++...... |. .+.+++|+|||++|++++.|+ .|++||+.. .....+.. |.+.|.+++|+
T Consensus 334 ~~~i~~~d~~~~~~~~l~~---~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g-~~~~~l~~--~~~~v~~~~~~ 406 (415)
T 2hqs_A 334 QQHIAKQDLATGGVQVLSS---TF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG-RFKARLPA--TDGQVKFPAWS 406 (415)
T ss_dssp CEEEEEEETTTCCEEECCC---SS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS-CCEEECCC--SSSEEEEEEEC
T ss_pred ceEEEEEECCCCCEEEecC---CC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC-CcEEEeeC--CCCCCcCCccc
Confidence 689999999887743221 43 899999999999999988887 799999874 44445544 67899999999
Q ss_pred cC
Q psy15995 662 DN 663 (683)
Q Consensus 662 ~~ 663 (683)
+.
T Consensus 407 ~~ 408 (415)
T 2hqs_A 407 PY 408 (415)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=6.9e-28 Score=237.12 Aligned_cols=279 Identities=11% Similarity=0.002 Sum_probs=213.8
Q ss_pred CCeEEEeeCCCCCeEE-Ee-----cCC----eEEEEeC--CCCccc--ccccCcccceEEEEECC--------------C
Q psy15995 45 GQPIVLGGDPKGKNFL-YT-----NGN----SVIIRNI--ENPAIS--DIYTEHSCAVNVAKYSP--------------S 96 (683)
Q Consensus 45 ~~~~~~~~s~~~~~l~-~~-----~~~----~i~v~~~--~~~~~~--~~~~~h~~~v~~~~~s~--------------d 96 (683)
..+...+|++.|..++ ++ .+| .|++||+ .+++.+ ..+.+|...+..+++++ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 3566677888886544 44 256 8999999 888876 45889999998888875 2
Q ss_pred CcEEEEecCC------CCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCc---cEEE
Q psy15995 97 GFYIASGDIS------GKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISG---KVRI 167 (683)
Q Consensus 97 ~~~las~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~---~i~i 167 (683)
+.+++.++.+ +.|++||+..+ ....+..+. ..+.+++|+|||++||+++.++ .|++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~~~--------------~~v~~~~~Spdg~~la~~s~~~~~~~i~~ 207 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRSP--------------QPLMSPAWSPDGSKLAYVTFESGRSALVI 207 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSC-SCEEEEEES--------------SCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCC-CCEEEeCCC--------------CcceeeEEcCCCCEEEEEEecCCCcEEEE
Confidence 5666665543 68999999754 334443333 6789999999999999998875 9999
Q ss_pred EeccccceeeeccccccCCCeeEEEEcCCCCeEEEEe-cCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEE
Q psy15995 168 WDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVG-EGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRII 246 (683)
Q Consensus 168 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 246 (683)
||+.+++.. .+..+.+.+.+++|+|||+.|++.+ .+....+.+|+.++++. ..+..|...+.+++|+|+++. |+
T Consensus 208 ~d~~tg~~~---~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~-l~ 282 (415)
T 2hqs_A 208 QTLANGAVR---QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQN-LA 282 (415)
T ss_dssp EETTTCCEE---EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSE-EE
T ss_pred EECCCCcEE---EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCE-EE
Confidence 999988754 2344567899999999999988554 44444567777777665 677788899999999999996 55
Q ss_pred EeeC-CC--eEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcCC---CcEEEEeCCCCeeEEeccCCccccCeE
Q psy15995 247 TGSE-DN--TIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD---GKVFLYDGASADLVSELGNPAHKGGVY 320 (683)
Q Consensus 247 ~~~~-d~--~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~i~ 320 (683)
+++. ++ .|.+||..+++. ..+..+...+.+++|+|+|++|++++.+ ..|++||+.+++... +.. +. .+.
T Consensus 283 ~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~--~~-~~~ 357 (415)
T 2hqs_A 283 FTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LSS--TF-LDE 357 (415)
T ss_dssp EEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CCC--SS-SCE
T ss_pred EEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ecC--CC-CcC
Confidence 5554 55 677779887764 3455577789999999999999988764 589999999887743 332 43 899
Q ss_pred EEEEccCCCEEEEEECCC---cEEEEECCCC
Q psy15995 321 AVAWKPDGTQLLTASGDK---TCKLWDIETK 348 (683)
Q Consensus 321 ~~~~~~~~~~l~~~~~dg---~i~iwd~~~~ 348 (683)
+++|+|++++|++++.++ .|++||+..+
T Consensus 358 ~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 358 TPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp EEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred CeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 999999999999988776 6888888643
No 133
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.96 E-value=1.8e-27 Score=254.72 Aligned_cols=352 Identities=10% Similarity=-0.001 Sum_probs=244.2
Q ss_pred CeEEEeeCCCCCeEEEecCCeEEEEeCCCCcccccccCccc---ceEEEEECCCCcEEEEecCC---------CCEEEEe
Q psy15995 46 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSC---AVNVAKYSPSGFYIASGDIS---------GKVRIWD 113 (683)
Q Consensus 46 ~~~~~~~s~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~h~~---~v~~~~~s~d~~~las~~~d---------g~i~iwd 113 (683)
.+..++|||||++++.+.++.|.+||+++++....+.+|.. .|.+++|||||++||+++.+ +.|.+||
T Consensus 18 ~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d 97 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (723)
T ss_dssp CCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred cccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence 46678899999988877788999999999998888877765 49999999999999998764 6788999
Q ss_pred CCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeecccccc---------
Q psy15995 114 TVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPI--------- 184 (683)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------- 184 (683)
+.+++. ..+..... +...+..++|||||++||.++. +.|++||+.+++..........
T Consensus 98 ~~~~~~-~~l~~~~~-----------~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~ 164 (723)
T 1xfd_A 98 IPHGDP-QSLDPPEV-----------SNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSD 164 (723)
T ss_dssp SSSCCC-EECCCTTC-----------CSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECC
T ss_pred CCCCce-EeccCCcc-----------ccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccc
Confidence 998865 22221110 0134778999999999999886 7999999998765432221110
Q ss_pred -------CCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEE
Q psy15995 185 -------GGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF 257 (683)
Q Consensus 185 -------~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw 257 (683)
.+.+.+++|||||+.|+++..+... +.+|...... ..+...+..+.|.++|.. ..+..|++|
T Consensus 165 ~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~G~~-----~~~~~l~~~ 233 (723)
T 1xfd_A 165 WLYEEEILKTHIAHWWSPDGTRLAYAAINDSR-VPIMELPTYT-----GSIYPTVKPYHYPKAGSE-----NPSISLHVI 233 (723)
T ss_dssp HHHHHTTSSSSEEEEECTTSSEEEEEEEECTT-SCEEEECCCS-----SSSSCCCEEEECCBTTSC-----CCEEEEEEE
T ss_pred eeEEEEeccCcceEEECCCCCEEEEEEECCCc-cceEEeeccC-----CcCCCcceeccCCCCCCC-----CCeeEEEEE
Confidence 0133789999999999998754322 2233322111 113345788888888752 345689999
Q ss_pred cCCCCceeeecccc------ccCeEEEEECCCCCEEEEEcC----CCcEEEEeCCCCeeEEeccCCccccCe----EEEE
Q psy15995 258 EGPPFKFKMTKQEH------SRFVQAVRYSPSGSHFASAGF----DGKVFLYDGASADLVSELGNPAHKGGV----YAVA 323 (683)
Q Consensus 258 ~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~i----~~~~ 323 (683)
|+.+++....+..+ ...+..++|+|||+++++... +..|++||+.+++....+.. .+...+ ..++
T Consensus 234 d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~~~~~~~~~~ 312 (723)
T 1xfd_A 234 GLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED-ESEAWLHRQNEEPV 312 (723)
T ss_dssp ESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE-ECSSCCCCCCCCCE
T ss_pred ECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe-ccCCEEeccCCCce
Confidence 99888765555543 667999999999998876643 35799999999887665432 122333 3789
Q ss_pred EccCCCEEEEE--ECCC------cEEEEE-CCCCce--eeEEEecCcceeceEEEEecCCEEEEEecC---CcEEEEecC
Q psy15995 324 WKPDGTQLLTA--SGDK------TCKLWD-IETKSV--VSEFIMGNQVEDQQVSCLWQGDYLLTVSLS---GFISYLDVN 389 (683)
Q Consensus 324 ~~~~~~~l~~~--~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~i~~~~~~ 389 (683)
|+|||+.|+.. ..++ .|.+|| ...+.. ...+..........+.++++++.|+..+.+ +.+.+|++.
T Consensus 313 ~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 313 FSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp ECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred EcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence 99999987754 4566 577777 344431 333322222222235788999999876665 789999987
Q ss_pred CCCc-ceeeeee---ccccEEEEEEeCCCCEEEEEeC
Q psy15995 390 NPST-PIRVIKG---HNKPITALALSPDRGTVFTGSH 422 (683)
Q Consensus 390 ~~~~-~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~ 422 (683)
.... ....+.. |...+..++|+|++++++....
T Consensus 393 ~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 393 TVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp SSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred CCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence 5332 2233332 5667889999999999886543
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.96 E-value=5.3e-27 Score=251.64 Aligned_cols=336 Identities=10% Similarity=0.033 Sum_probs=241.4
Q ss_pred ccceEEEEECCCCcEEEEecC-CC-----CEEEEeCCCcccccccccccCCC---Cccc-------ceeeeeecceeeeE
Q psy15995 85 SCAVNVAKYSPSGFYIASGDI-SG-----KVRIWDTVNKEHILKNEFHPIGG---PIKD-------IGTLLSLTSIRNIL 148 (683)
Q Consensus 85 ~~~v~~~~~s~d~~~las~~~-dg-----~i~iwd~~~~~~~~~~~~~~~~~---~~~~-------~~~~~~~~~i~~~~ 148 (683)
...|.+++|||||++||+++. |+ .|.+||+.+++....+..+.... .+.. .........+..++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 557999999999999999987 88 89999999987655554432110 0000 00000013478999
Q ss_pred eeccceEEEeecCCccEEEEecccc---ceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeee
Q psy15995 149 VLSIGFYIASGDISGKVRIWDTVNK---EHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEI 225 (683)
Q Consensus 149 ~s~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (683)
|+|||++|++++. +.|++||+.++ +. ..+..+...+..++|+|||++++++..+ .+.+|+.++++.....
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~---~~l~~~~~~~~~~~~SPDG~~la~~~~~---~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAV---RQLTHGEGFATDAKLSPKGGFVSFIRGR---NLWVIDLASGRQMQLT 188 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSC---CBCCCSSSCEEEEEECTTSSEEEEEETT---EEEEEETTTTEEEECC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceE---EEcccCCcccccccCCCCCCEEEEEeCC---cEEEEecCCCCEEEec
Confidence 9999999999886 99999999987 42 2334456789999999999999998864 3778888777665554
Q ss_pred ecCCcC----------------eEEEEeecCCCeEEEEeeCCC---------------------------------eEEE
Q psy15995 226 SGQSKP----------------INSCDFKPSRPFRIITGSEDN---------------------------------TIAV 256 (683)
Q Consensus 226 ~~~~~~----------------v~~~~~~~~~~~~l~~~~~d~---------------------------------~i~i 256 (683)
..+... +..++|+|+++. |++++.|+ .|.+
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~-l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~ 267 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSA-IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV 267 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSC-EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCE-EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence 444432 478999999996 77776554 7889
Q ss_pred EcCCC-Cceeeecc--ccccCeEEEEECCCCCEEEEEcC-----CCcEEEEeCCCCeeEEeccCCcccc----CeEEEEE
Q psy15995 257 FEGPP-FKFKMTKQ--EHSRFVQAVRYSPSGSHFASAGF-----DGKVFLYDGASADLVSELGNPAHKG----GVYAVAW 324 (683)
Q Consensus 257 w~~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~----~i~~~~~ 324 (683)
||+.+ ++...... .|...+..++| |||+.|++++. +..|++||+.+++....+.. +.. .+..++|
T Consensus 268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~--~~~~~~~~~~~~~~ 344 (741)
T 2ecf_A 268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE--TSPTWVPLHNSLRF 344 (741)
T ss_dssp ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE--ECSSCCCCCSCCEE
T ss_pred EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEc--CCCCcCCcCCceEE
Confidence 99988 77654443 47788999999 99999887654 56799999999987766543 322 4568899
Q ss_pred ccCCCEEEEEECCCcEEEEECC-CCceeeEEEecCcceeceE-EEEecCCEEEEEec-CC--cEEEEecCCCCcceeeee
Q psy15995 325 KPDGTQLLTASGDKTCKLWDIE-TKSVVSEFIMGNQVEDQQV-SCLWQGDYLLTVSL-SG--FISYLDVNNPSTPIRVIK 399 (683)
Q Consensus 325 ~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~g--~i~~~~~~~~~~~~~~~~ 399 (683)
+||++++++++.+|..++|.+. .++ ...+.. .......+ .++++++.++..+. ++ .+++|++.........+.
T Consensus 345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~-~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~ 422 (741)
T 2ecf_A 345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALTH-GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS 422 (741)
T ss_dssp CTTSCEEEEECTTSSCEEEEECSSSC-EEESCC-SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred CCCCeEEEEecCCCccEEEEEcCCCC-eeeeee-cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence 9999988898899988888775 333 333322 23333343 58889987765554 44 889999875444444554
Q ss_pred eccccEEEEEEeCCCCEEEEEeCC----CcEEEEcCCCC
Q psy15995 400 GHNKPITALALSPDRGTVFTGSHD----GFITRWNAKTG 434 (683)
Q Consensus 400 ~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~w~~~~~ 434 (683)
. ...+..++|+||+++++....+ ..+.+++...+
T Consensus 423 ~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 423 K-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp C-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred c-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 4 5678899999999998866543 46888887544
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.95 E-value=4.7e-26 Score=243.66 Aligned_cols=365 Identities=14% Similarity=0.113 Sum_probs=242.8
Q ss_pred ceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCC----
Q psy15995 87 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDIS---- 162 (683)
Q Consensus 87 ~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---- 162 (683)
.+.+++|||||+++++ +.||+|++||+.+++....+..+... ...+..++|||||++||+++.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~-----------~~~v~~~~~SpDg~~l~~~~~~~~~~ 85 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIE-----------SLRAIRYEISPDREYALFSYNVEPIY 85 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTT-----------TTTCSEEEECTTSSEEEEEESCCCCS
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEecccccc-----------ccccceEEECCCCCEEEEEecCccce
Confidence 4678999999998876 78999999999998766555433210 0147899999999999998764
Q ss_pred -----ccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeecCCcCe-----
Q psy15995 163 -----GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPI----- 232 (683)
Q Consensus 163 -----~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----- 232 (683)
+.+.+||+.+++.........+...+..++|||||+.+++++.. .+.+|+.++++.......+...+
T Consensus 86 ~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~---~i~~~~~~~g~~~~~~~~~~~~~~~~g~ 162 (723)
T 1xfd_A 86 QHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFEN---NIYYCAHVGKQAIRVVSTGKEGVIYNGL 162 (723)
T ss_dssp SSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETT---EEEEESSSSSCCEEEECCCBTTTEEEEE
T ss_pred eecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEECC---eEEEEECCCCceEEEecCCCCCceECcc
Confidence 78889999988753222233344458899999999999998874 36777777777666555544433
Q ss_pred -------------EEEEeecCCCeEEEEee-CCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEE
Q psy15995 233 -------------NSCDFKPSRPFRIITGS-EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL 298 (683)
Q Consensus 233 -------------~~~~~~~~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 298 (683)
..++|+|+++. |++++ .++.+.+|++..... .+...+..+.|.++|.. ..+..|++
T Consensus 163 ~~~v~~ee~~~~~~~~~~SpDg~~-la~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~G~~----~~~~~l~~ 232 (723)
T 1xfd_A 163 SDWLYEEEILKTHIAHWWSPDGTR-LAYAAINDSRVPIMELPTYTG-----SIYPTVKPYHYPKAGSE----NPSISLHV 232 (723)
T ss_dssp CCHHHHHTTSSSSEEEEECTTSSE-EEEEEEECTTSCEEEECCCSS-----SSSCCCEEEECCBTTSC----CCEEEEEE
T ss_pred cceeEEEEeccCcceEEECCCCCE-EEEEEECCCccceEEeeccCC-----cCCCcceeccCCCCCCC----CCeeEEEE
Confidence 78999999997 55554 445677787543221 13345788999988863 33568999
Q ss_pred EeCCCCeeEEeccCC----ccccCeEEEEEccCCCEEEEEECC----CcEEEEECCCCceeeEEEecCcceeceEEEEec
Q psy15995 299 YDGASADLVSELGNP----AHKGGVYAVAWKPDGTQLLTASGD----KTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQ 370 (683)
Q Consensus 299 w~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (683)
||+.+++....+..+ .+...+..++|+|||+++++.... ..|++||+.+++....+..
T Consensus 233 ~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-------------- 298 (723)
T 1xfd_A 233 IGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED-------------- 298 (723)
T ss_dssp EESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE--------------
T ss_pred EECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe--------------
Confidence 999988865555431 125678999999999988776532 4688999888765433211
Q ss_pred CCEEEEEecCCcEEEEecCCCCcceeeeeeccccE----EEEEEeCCCCEEEE--EeCCC------cEEEEc-CCCCCc-
Q psy15995 371 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPI----TALALSPDRGTVFT--GSHDG------FITRWN-AKTGEN- 436 (683)
Q Consensus 371 ~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~l~~--~~~dg------~i~~w~-~~~~~~- 436 (683)
.+...+ ..++|+|||+.|+. +..++ .|.+|| ..+++.
T Consensus 299 -----------------------------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 349 (723)
T 1xfd_A 299 -----------------------------ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND 349 (723)
T ss_dssp -----------------------------ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC
T ss_pred -----------------------------ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc
Confidence 111222 26789999998775 44566 466666 333320
Q ss_pred -ceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCcee
Q psy15995 437 -DRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKV 515 (683)
Q Consensus 437 -~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (683)
...+..+
T Consensus 350 ~~~~l~~~------------------------------------------------------------------------ 357 (723)
T 1xfd_A 350 NIQSITSG------------------------------------------------------------------------ 357 (723)
T ss_dssp CCCBSCCS------------------------------------------------------------------------
T ss_pred ceeEeecC------------------------------------------------------------------------
Confidence 1111100
Q ss_pred eeecCCCCCc-EEEEccCCCEEEEEcCC---CcEEEEEcCCCcc--Ccceee--cCCcCeeEEEECCCCCEEEEEeCCC-
Q psy15995 516 SSLPIDYEPS-SISLDHEHGLVAVGGAD---SKVHIYELNNKSL--SPKAEL--DHLGPVTDCSFSPSNEYLVASDAHR- 586 (683)
Q Consensus 516 ~~~~~~~~~~-~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~--~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~- 586 (683)
...+. .++|+||++.|+..+.+ +.+++|++..... ...... .+...+..++|+|||++|+.....-
T Consensus 358 -----~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 432 (723)
T 1xfd_A 358 -----DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPG 432 (723)
T ss_dssp -----SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSS
T ss_pred -----CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCC
Confidence 01112 35899999998766554 7899999865432 111111 1566789999999999998754322
Q ss_pred --eEEEEECCCC
Q psy15995 587 --KVVLYRVPDF 596 (683)
Q Consensus 587 --~i~i~~~~~~ 596 (683)
...+++..++
T Consensus 433 ~p~~~~~~~~~~ 444 (723)
T 1xfd_A 433 VPMVTVHNTTDK 444 (723)
T ss_dssp SCCEEEEETTTC
T ss_pred CCeEEEEECCCC
Confidence 2344555443
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.95 E-value=4.8e-25 Score=211.74 Aligned_cols=279 Identities=12% Similarity=0.073 Sum_probs=204.7
Q ss_pred eeCCCCCeEEEe--cCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecC-CCCEEEEeCCCccc-ccccccc
Q psy15995 51 GGDPKGKNFLYT--NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI-SGKVRIWDTVNKEH-ILKNEFH 126 (683)
Q Consensus 51 ~~s~~~~~l~~~--~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~-dg~i~iwd~~~~~~-~~~~~~~ 126 (683)
.|++++++++.+ .++.|.+||.++++....+..+...+ +++|+|||++|++++. ++.|.+||+.+++. ...+..+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 466777765544 57899999999999888877777777 9999999997766554 88999999998876 4333332
Q ss_pred cCCCCcccceeeeeecceee-eEeeccceEEEeecCCc---cEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEE
Q psy15995 127 PIGGPIKDIGTLLSLTSIRN-ILVLSIGFYIASGDISG---KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVV 202 (683)
Q Consensus 127 ~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 202 (683)
..... ++|+|+|++|+++..++ .|.+||+.+++.+..... .....+++|+|||+++++
T Consensus 83 ---------------~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~spdg~~l~~ 144 (331)
T 3u4y_A 83 ---------------QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI---PYDAVGIAISPNGNGLIL 144 (331)
T ss_dssp ---------------SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC---CTTEEEEEECTTSSCEEE
T ss_pred ---------------CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC---CCCccceEECCCCCEEEE
Confidence 23344 89999999999666553 899999998876554332 356789999999998888
Q ss_pred EecCCceEEEEEEccCCCce----eeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCce---eeeccccccCe
Q psy15995 203 VGEGRERFGHVFMSETGTSV----GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF---KMTKQEHSRFV 275 (683)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~---~~~~~~~~~~v 275 (683)
+.......+.+|+.+....+ ............++|+|+++++++++..++.|.+||..+++. +..+.. ...+
T Consensus 145 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~ 223 (331)
T 3u4y_A 145 IDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLP 223 (331)
T ss_dssp EEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCC
T ss_pred EecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCC
Confidence 77654443567777653332 122244556899999999997667777899999999998887 666654 3667
Q ss_pred EEEEECCCCCEEEEEc-CCCcEEEEeCCCCee--EEeccCC-----ccccCeEEEEEccCCCEEEEEEC-CCcEEEEECC
Q psy15995 276 QAVRYSPSGSHFASAG-FDGKVFLYDGASADL--VSELGNP-----AHKGGVYAVAWKPDGTQLLTASG-DKTCKLWDIE 346 (683)
Q Consensus 276 ~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~--~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 346 (683)
..++|+|+|+++++++ .++.|.+||..+++. +..+... ........++|+|++++|++++. ++.|.+||+.
T Consensus 224 ~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 224 GTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS 303 (331)
T ss_dssp CCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred ceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence 8999999999776665 477899999999877 3332211 11122356899999998876665 5689999998
Q ss_pred CCc
Q psy15995 347 TKS 349 (683)
Q Consensus 347 ~~~ 349 (683)
...
T Consensus 304 ~~~ 306 (331)
T 3u4y_A 304 GKV 306 (331)
T ss_dssp SCE
T ss_pred CCc
Confidence 654
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=7.2e-25 Score=235.07 Aligned_cols=325 Identities=12% Similarity=0.076 Sum_probs=243.0
Q ss_pred cceeeeEeeccceEEEeecC-Cc-----cEEEEeccccceeeeccccccC----------------------CCeeEEEE
Q psy15995 142 TSIRNILVLSIGFYIASGDI-SG-----KVRIWDTVNKEHILKNEFHPIG----------------------GPIKDIAW 193 (683)
Q Consensus 142 ~~i~~~~~s~~~~~l~~~~~-d~-----~i~iwd~~~~~~~~~~~~~~~~----------------------~~i~~~~~ 193 (683)
..+..++|+|||++|++++. |+ .|++||+.+++.........+. ..+.+++|
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 56889999999999999988 88 8999999998765444433322 34789999
Q ss_pred cCCCCeEEEEecCCceEEEEEEccCCC--ceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeecccc
Q psy15995 194 SPDNQRMVVVGEGRERFGHVFMSETGT--SVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH 271 (683)
Q Consensus 194 s~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~ 271 (683)
+|||++|++++. ..+.+|+.+++. ....+..|...+..++|+|+|+. |+.++ ++.|++||+.+++.......+
T Consensus 117 SpDg~~l~~~~~---~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~-la~~~-~~~i~~~d~~~g~~~~~~~~~ 191 (741)
T 2ecf_A 117 SPDAQRLLFPLG---GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGF-VSFIR-GRNLWVIDLASGRQMQLTADG 191 (741)
T ss_dssp CTTSSEEEEEET---TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSE-EEEEE-TTEEEEEETTTTEEEECCCCC
T ss_pred CCCCCEEEEEeC---CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCE-EEEEe-CCcEEEEecCCCCEEEeccCC
Confidence 999999999887 236778877773 55677888899999999999995 66666 469999999988776655444
Q ss_pred ccC----------------eEEEEECCCCCEEEEEcCCC---------------------------------cEEEEeCC
Q psy15995 272 SRF----------------VQAVRYSPSGSHFASAGFDG---------------------------------KVFLYDGA 302 (683)
Q Consensus 272 ~~~----------------v~~~~~~~~~~~l~~~~~dg---------------------------------~i~iw~~~ 302 (683)
... +..++|+|||++|++++.|+ .|++||+.
T Consensus 192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 271 (741)
T 2ecf_A 192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA 271 (741)
T ss_dssp CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred ccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence 332 47899999999999887665 78999998
Q ss_pred C-CeeEEeccCCccccCeEEEEEccCCCEEEEEEC-----CCcEEEEECCCCceeeEEEecCcc---eeceEEEEecCCE
Q psy15995 303 S-ADLVSELGNPAHKGGVYAVAWKPDGTQLLTASG-----DKTCKLWDIETKSVVSEFIMGNQV---EDQQVSCLWQGDY 373 (683)
Q Consensus 303 ~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 373 (683)
+ ++.........+...+..++| |||+.|++++. +..|++||+.+++....+...... ....+.+++++++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~ 350 (741)
T 2ecf_A 272 EQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSI 350 (741)
T ss_dssp TTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCE
T ss_pred CCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeE
Confidence 8 776554432247788999999 99999987764 467999999998876655443322 2346788899998
Q ss_pred EEEEecCCcEEEEecCCCCcceeeeeeccccEEEE-EEeCCCCEEEE-EeCCC--cEEEEcCCC-CCcceeccCCCCcce
Q psy15995 374 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITAL-ALSPDRGTVFT-GSHDG--FITRWNAKT-GENDRVQGAGHGNQI 448 (683)
Q Consensus 374 l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~-~~~dg--~i~~w~~~~-~~~~~~~~~~~~~~v 448 (683)
++++..+|...+|....... ...+..|...+..+ .|+|+++.++. ++.++ .+++|++.. +.....+.. ...+
T Consensus 351 ~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~--~~~~ 427 (741)
T 2ecf_A 351 LWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK--APGM 427 (741)
T ss_dssp EEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC--SCSE
T ss_pred EEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc--CCCc
Confidence 88889999888887764344 66777788888887 59999998764 55555 899998764 333333322 4556
Q ss_pred eEEEEe--CCeEEEEEcC----CeEEEEeCCCC
Q psy15995 449 NGMKAT--GELLYTCGID----DTIKQVDLSSN 475 (683)
Q Consensus 449 ~~~~~~--~~~l~~~~~d----~~i~~~~~~~~ 475 (683)
..+.++ ++.++....+ ..+.+++....
T Consensus 428 ~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 428 HSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp EEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred eEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 677776 6777665443 46888887554
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.94 E-value=5.9e-25 Score=234.20 Aligned_cols=316 Identities=15% Similarity=0.137 Sum_probs=217.1
Q ss_pred EeeCCCCCeEEEecCCeEEEEeCCCCccc-ccccCcc-----------------cceEEEEECCCCcEEEEecCCCCEEE
Q psy15995 50 LGGDPKGKNFLYTNGNSVIIRNIENPAIS-DIYTEHS-----------------CAVNVAKYSPSGFYIASGDISGKVRI 111 (683)
Q Consensus 50 ~~~s~~~~~l~~~~~~~i~v~~~~~~~~~-~~~~~h~-----------------~~v~~~~~s~d~~~las~~~dg~i~i 111 (683)
+.|+ |+.+++..+..| +||+.+++.+ ..+..|. ..|.+++|||| ++++.+ .++.|++
T Consensus 31 ~~w~--g~~~~~~~~~~i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i~~ 105 (706)
T 2z3z_A 31 LQWM--GDNYVFIEGDDL-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGLVG 105 (706)
T ss_dssp CEEE--TTEEEEEETTEE-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEEEE
T ss_pred CcCc--CCeEEEEeCCcE-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEEEE
Confidence 4566 555555544448 9999999873 4444443 46999999999 555554 3589999
Q ss_pred EeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccc-----cceeeecccccc--
Q psy15995 112 WDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVN-----KEHILKNEFHPI-- 184 (683)
Q Consensus 112 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~-----~~~~~~~~~~~~-- 184 (683)
||+.+++...... +. ..+..++|+|||++||++ .++.|++||+.+ ++..........
T Consensus 106 ~d~~~~~~~~l~~-~~--------------~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~ 169 (706)
T 2z3z_A 106 FDMLARKVTYLFD-TN--------------EETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETL 169 (706)
T ss_dssp EETTTTEEEEEEC-CT--------------TCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTE
T ss_pred EECCCCceEEccC-Cc--------------ccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCe
Confidence 9998876433221 11 457788999999999995 689999999988 764432221110
Q ss_pred ----------CCCeeEEEEcCCCCeEEEEecC-------------------------------CceEEEEEEccCCCcee
Q psy15995 185 ----------GGPIKDIAWSPDNQRMVVVGEG-------------------------------RERFGHVFMSETGTSVG 223 (683)
Q Consensus 185 ----------~~~i~~~~~s~~~~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 223 (683)
...+.+++|+|||++|++++.+ ....+.+|+.++++...
T Consensus 170 ~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~ 249 (706)
T 2z3z_A 170 VYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY 249 (706)
T ss_dssp EESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE
T ss_pred EcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe
Confidence 0125899999999999998721 33456777777776544
Q ss_pred ee--ecCCcCeEEEEeecCCCeEEEEeeCCC-----eEEEEcCCCCceeeecc-c-ccc---CeEEEEECC--CCCEEEE
Q psy15995 224 EI--SGQSKPINSCDFKPSRPFRIITGSEDN-----TIAVFEGPPFKFKMTKQ-E-HSR---FVQAVRYSP--SGSHFAS 289 (683)
Q Consensus 224 ~~--~~~~~~v~~~~~~~~~~~~l~~~~~d~-----~i~iw~~~~~~~~~~~~-~-~~~---~v~~~~~~~--~~~~l~~ 289 (683)
.. ..|...+..++|+|+++. +++++.++ .|.+||..+++....+. . +.. .+.+++|+| +|+++++
T Consensus 250 ~~~~~~~~~~~~~~~~spdg~~-l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~ 328 (706)
T 2z3z_A 250 LQTGEPKEKFLTNLSWSPDENI-LYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQ 328 (706)
T ss_dssp CCCCSCTTCEEEEEEECTTSSE-EEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEE
T ss_pred eccCCCCceeEeeEEEECCCCE-EEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEE
Confidence 33 256778999999999996 77666655 89999999883333322 2 222 246789999 9999999
Q ss_pred EcCCCcEEEEeCC-CCeeEEeccCCccccCeEE-EEEccCCCEEEEEECC-C----cEEEEECCCCceeeEEEecCccee
Q psy15995 290 AGFDGKVFLYDGA-SADLVSELGNPAHKGGVYA-VAWKPDGTQLLTASGD-K----TCKLWDIETKSVVSEFIMGNQVED 362 (683)
Q Consensus 290 ~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~d-g----~i~iwd~~~~~~~~~~~~~~~~~~ 362 (683)
++.++.+++|.+. ++..+..+.. +...+.. ++|+|+++.|+.++.+ + .|..||+.+++. .
T Consensus 329 ~~~~g~~~l~~~~~~~~~~~~l~~--~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~---------- 395 (706)
T 2z3z_A 329 SRRDGWNHLYLYDTTGRLIRQVTK--GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-K---------- 395 (706)
T ss_dssp ECTTSSCEEEEEETTSCEEEECCC--SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-E----------
T ss_pred EccCCccEEEEEECCCCEEEecCC--CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-e----------
Confidence 9999999999876 5666666654 6667776 7999999988776654 3 455566655431 1
Q ss_pred ceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCC----CcEEEEcCCCCC
Q psy15995 363 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHD----GFITRWNAKTGE 435 (683)
Q Consensus 363 ~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~w~~~~~~ 435 (683)
.+ .|...+.+++|+||+++++....+ +.|.+||+.+++
T Consensus 396 ----------------------------------~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 396 ----------------------------------DL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ----------------------------------ES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred ----------------------------------ec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 11 145568889999999988876443 469999998876
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.94 E-value=5.2e-25 Score=234.62 Aligned_cols=322 Identities=11% Similarity=0.077 Sum_probs=222.4
Q ss_pred eEEEEeecCCCeEEEEeeCCCeEEEEcCCCCcee-eeccccc-----------------cCeEEEEECCCCCEEEEEcCC
Q psy15995 232 INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK-MTKQEHS-----------------RFVQAVRYSPSGSHFASAGFD 293 (683)
Q Consensus 232 v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~-~~~~~~~-----------------~~v~~~~~~~~~~~l~~~~~d 293 (683)
+..+.|. +. .+++.+.++ | +||..+++.+ ..+..+. ..|.+++|+|| +.++.+. +
T Consensus 28 ~~~~~w~--g~-~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~ 100 (706)
T 2z3z_A 28 VVGLQWM--GD-NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-Q 100 (706)
T ss_dssp CTTCEEE--TT-EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-T
T ss_pred CCCCcCc--CC-eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-C
Confidence 4456777 44 367777777 8 9999998873 3333332 46999999999 6666554 5
Q ss_pred CcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCC-----CceeeEEEecCcc--------
Q psy15995 294 GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET-----KSVVSEFIMGNQV-------- 360 (683)
Q Consensus 294 g~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~-------- 360 (683)
+.|++||+.+++...... +...+.+++|+|||+.|+++ .++.|++||+.+ ++...........
T Consensus 101 ~~i~~~d~~~~~~~~l~~---~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 176 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLFD---TNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVH 176 (706)
T ss_dssp TEEEEEETTTTEEEEEEC---CTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCG
T ss_pred CEEEEEECCCCceEEccC---CcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchh
Confidence 999999999987765543 55678889999999999985 678999999988 6654332222111
Q ss_pred -----eeceEEEEecCCEEEEEe---------------------------------cCCcEEEEecCCCCcceeee-eec
Q psy15995 361 -----EDQQVSCLWQGDYLLTVS---------------------------------LSGFISYLDVNNPSTPIRVI-KGH 401 (683)
Q Consensus 361 -----~~~~~~~~~~~~~l~~~~---------------------------------~~g~i~~~~~~~~~~~~~~~-~~~ 401 (683)
....+.++|++++|++++ .+..+.+||+..+....... ..|
T Consensus 177 ~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 256 (706)
T 2z3z_A 177 QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPK 256 (706)
T ss_dssp GGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCT
T ss_pred hhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCC
Confidence 136788999999999987 34679999998644321111 246
Q ss_pred cccEEEEEEeCCCCEEEEEeCCC-----cEEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCc
Q psy15995 402 NKPITALALSPDRGTVFTGSHDG-----FITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNA 476 (683)
Q Consensus 402 ~~~v~~~~~~~~~~~l~~~~~dg-----~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~ 476 (683)
...+.+++|+|||+.|++++.++ .|.+||+.+++.......... .
T Consensus 257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~------------------~------------ 306 (706)
T 2z3z_A 257 EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD------------------K------------ 306 (706)
T ss_dssp TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC------------------S------------
T ss_pred ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC------------------C------------
Confidence 67899999999999999887765 888999877632221100000 0
Q ss_pred ccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEcc--CCCEEEEEcCCCcEEEEEcC-CC
Q psy15995 477 YSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDH--EHGLVAVGGADSKVHIYELN-NK 553 (683)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~-~~ 553 (683)
.....+..++|+| ++++++++..|+.+++|.++ ++
T Consensus 307 ------------------------------------------~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~ 344 (706)
T 2z3z_A 307 ------------------------------------------HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG 344 (706)
T ss_dssp ------------------------------------------SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS
T ss_pred ------------------------------------------CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC
Confidence 0000135678999 99999999999999999876 33
Q ss_pred ccCcceeecCCcCeeE-EEECCCCCEEEEEeCC-C----eEEEEECCCCccccccceeeecccEEEEEecCCCCeEEEee
Q psy15995 554 SLSPKAELDHLGPVTD-CSFSPSNEYLVASDAH-R----KVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGS 627 (683)
Q Consensus 554 ~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d-~----~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~ 627 (683)
.... ....+...+.. ++|+||++.|+.++.+ + .|..||+.+++... .. |...+.+++|||||++|+...
T Consensus 345 ~~~~-~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~-l~---~~~~~~~~~~spdg~~l~~~~ 419 (706)
T 2z3z_A 345 RLIR-QVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKD-LT---PESGMHRTQLSPDGSAIIDIF 419 (706)
T ss_dssp CEEE-ECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEE-SC---CSSSEEEEEECTTSSEEEEEE
T ss_pred CEEE-ecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCcee-cc---CCCceEEEEECCCCCEEEEEe
Confidence 3322 22345566776 7999999988765544 3 67777877766432 21 667799999999999988765
Q ss_pred cC----CcEEEEeCCCCc
Q psy15995 628 LD----TTIIIWSLASPA 641 (683)
Q Consensus 628 ~d----~~v~iw~~~~~~ 641 (683)
.+ +.|++||+.+++
T Consensus 420 ~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 420 QSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ECSSCSCEEEEEESSSCE
T ss_pred cCCCCCcEEEEEECCCCe
Confidence 44 469999998877
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=2.7e-24 Score=206.46 Aligned_cols=287 Identities=11% Similarity=0.103 Sum_probs=202.4
Q ss_pred EEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcC-CCcEEEEeCCCCee-EEeccC
Q psy15995 235 CDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGF-DGKVFLYDGASADL-VSELGN 312 (683)
Q Consensus 235 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~-~~~~~~ 312 (683)
..|.++++..+++.+.++.|.+||..+++....+..+...+ .++|+|+++++++++. ++.|.+||..+++. ...+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 34666777778899999999999999999888777666667 9999999997666655 88999999999887 555543
Q ss_pred CccccCeEEEEEccCCCEEEEEECCC---cEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecC
Q psy15995 313 PAHKGGVYAVAWKPDGTQLLTASGDK---TCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVN 389 (683)
Q Consensus 313 ~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~ 389 (683)
+..+..+++|+|+++++++...++ .|.+||+.+++.+..+.
T Consensus 82 --~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~---------------------------------- 125 (331)
T 3u4y_A 82 --GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP---------------------------------- 125 (331)
T ss_dssp --CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE----------------------------------
T ss_pred --CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE----------------------------------
Confidence 444554599999999999555543 89999999887654331
Q ss_pred CCCcceeeeeeccccEEEEEEeCCCCEEEEE-eCCCc-EEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEEEEcCCeE
Q psy15995 390 NPSTPIRVIKGHNKPITALALSPDRGTVFTG-SHDGF-ITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTI 467 (683)
Q Consensus 390 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~-i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i 467 (683)
+.....+++|+|+|++++++ ..++. |.+|++..........
T Consensus 126 -----------~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-------------------------- 168 (331)
T 3u4y_A 126 -----------IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-------------------------- 168 (331)
T ss_dssp -----------CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE--------------------------
T ss_pred -----------CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC--------------------------
Confidence 12335789999999866655 55578 9999987532211000
Q ss_pred EEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEE-cCCCcEE
Q psy15995 468 KQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVG-GADSKVH 546 (683)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~ 546 (683)
....+....+..++++|++++++++ ..++.|.
T Consensus 169 -----------------------------------------------~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~ 201 (331)
T 3u4y_A 169 -----------------------------------------------QEFISGGTRPFNITFTPDGNFAFVANLIGNSIG 201 (331)
T ss_dssp -----------------------------------------------EEEECSSSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred -----------------------------------------------CccccCCCCccceEECCCCCEEEEEeCCCCeEE
Confidence 0001122345789999999966554 5689999
Q ss_pred EEEcCCCccCc-ceeecCCcCeeEEEECCCCCEEEEEe-CCCeEEEEECCCCccccccceee----ecc---cEEEEEec
Q psy15995 547 IYELNNKSLSP-KAELDHLGPVTDCSFSPSNEYLVASD-AHRKVVLYRVPDFELAHNKEWGF----HSA---KVNCVAWS 617 (683)
Q Consensus 547 i~d~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~----h~~---~v~~~~~s 617 (683)
+||+.+++... .........+..++|+|||++|++++ .++.|.+||+.++++........ +.. ....++|+
T Consensus 202 v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 281 (331)
T 3u4y_A 202 ILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALN 281 (331)
T ss_dssp EEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEEC
T ss_pred EEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEEC
Confidence 99999887611 12233556788999999999877665 57889999999988722211110 112 23568999
Q ss_pred CCCCeEEEeec-CCcEEEEeCCCCce
Q psy15995 618 PDSALVASGSL-DTTIIIWSLASPAK 642 (683)
Q Consensus 618 ~d~~~l~~~~~-d~~v~iw~~~~~~~ 642 (683)
||+++|++++. ++.|.+||+.....
T Consensus 282 pdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 282 KTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp TTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred CCCCEEEEecCCCCcEEEEEecCCcc
Confidence 99998866554 56999999987553
No 141
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.94 E-value=4.5e-25 Score=235.52 Aligned_cols=359 Identities=10% Similarity=0.031 Sum_probs=240.3
Q ss_pred EEEeeCCCCCeEEEecCCeEEEEeCCCCcccccccCccc---ceEEEEECCCCcEEEEecC---------CCCEEEEeCC
Q psy15995 48 IVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSC---AVNVAKYSPSGFYIASGDI---------SGKVRIWDTV 115 (683)
Q Consensus 48 ~~~~~s~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~h~~---~v~~~~~s~d~~~las~~~---------dg~i~iwd~~ 115 (683)
..++|+|||++++.+.++.|.+||+.+++....+.+|.. .|.+++|||||++||+++. ++.|++||+.
T Consensus 19 ~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 19 FFPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred CccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 366799999888877889999999999998777766654 3999999999999998876 6899999999
Q ss_pred CcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCC---------
Q psy15995 116 NKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGG--------- 186 (683)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--------- 186 (683)
+++.+...... ..+..++|||||++||.+. ++.|++||+.+++.... ...++..
T Consensus 99 ~g~~~~~~~l~---------------~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l-~~~~~~~~v~~g~~~~ 161 (719)
T 1z68_A 99 NGEFVRGNELP---------------RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQI-TFNGRENKIFNGIPDW 161 (719)
T ss_dssp TTEECCSSCCC---------------SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC-CCCCBTTTEEESSCCH
T ss_pred CCccccceecC---------------cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEE-ecCCCcCCeEcccccc
Confidence 88653111111 3477899999999999985 78999999988765422 2122222
Q ss_pred --------CeeEEEEcCCCCeEEEEecCCc--eEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEE
Q psy15995 187 --------PIKDIAWSPDNQRMVVVGEGRE--RFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAV 256 (683)
Q Consensus 187 --------~i~~~~~s~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 256 (683)
...+++|||||++|++++.+.. ....+.... ..+...+..+.+...+.. .....|++
T Consensus 162 v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~yp~~g~~-----~~~~~l~~ 228 (719)
T 1z68_A 162 VYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYG--------DEQYPRTINIPYPKAGAK-----NPVVRIFI 228 (719)
T ss_dssp HHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECC--------SSSSCEEEEEECCBTTSC-----CCEEEEEE
T ss_pred eeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccC--------CCCCccceeecCCCCCCC-----CCeeEEEE
Confidence 1258999999999999875422 111111111 123334556666555431 23357999
Q ss_pred EcCCCCcee--------eeccccccCeEEEEECCCCCEEEEEcCC----CcEEEEe----CCCCeeEEecc--CCccccC
Q psy15995 257 FEGPPFKFK--------MTKQEHSRFVQAVRYSPSGSHFASAGFD----GKVFLYD----GASADLVSELG--NPAHKGG 318 (683)
Q Consensus 257 w~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iw~----~~~~~~~~~~~--~~~~~~~ 318 (683)
||+.+++.. ..+.+|...+..++|+||++.+++.... ..|.+|| ..+++....+. ...|...
T Consensus 229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~ 308 (719)
T 1z68_A 229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGW 308 (719)
T ss_dssp EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSC
T ss_pred EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCce
Confidence 999887653 2234688889999999998776664432 2488899 88877655441 0125555
Q ss_pred eE-----EEEEccCCCEEEE--EECCC--cEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecC-----CcEE
Q psy15995 319 VY-----AVAWKPDGTQLLT--ASGDK--TCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLS-----GFIS 384 (683)
Q Consensus 319 i~-----~~~~~~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----g~i~ 384 (683)
+. .+.|+|||+.++. ...+| .|.+||+.+++. ..+. ............ +++.++..+.+ +...
T Consensus 309 ~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt-~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~ 385 (719)
T 1z68_A 309 AGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQIT-SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRN 385 (719)
T ss_dssp SSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECS-CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBE
T ss_pred EccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-Eecc-cCceEEEEEEEE-eCCEEEEEEecCCCCCceEE
Confidence 65 7899999996655 33455 477778776652 2222 222223334444 77777777665 7788
Q ss_pred EEecCCC-Cc-ceeeee----eccccEEEEEEeCCCCEEEEE-eCC--CcEEEEcCCCCCccee
Q psy15995 385 YLDVNNP-ST-PIRVIK----GHNKPITALALSPDRGTVFTG-SHD--GFITRWNAKTGENDRV 439 (683)
Q Consensus 385 ~~~~~~~-~~-~~~~~~----~~~~~v~~~~~~~~~~~l~~~-~~d--g~i~~w~~~~~~~~~~ 439 (683)
+|.+... .. ....+. +|...+..+.|+|++++++.. +.. ..+.+||+.+++....
T Consensus 386 l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~ 449 (719)
T 1z68_A 386 IYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKI 449 (719)
T ss_dssp EEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEE
T ss_pred EEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEE
Confidence 8887642 21 122222 255678889999999887743 333 4688999888775433
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=1.2e-23 Score=203.31 Aligned_cols=270 Identities=14% Similarity=0.162 Sum_probs=185.9
Q ss_pred cCCeEEEEeCC-CCc--ccccccCcccceEEEEECCCCcEEEEecCC-CCEEEEeCC--CcccccccccccCCCCcccce
Q psy15995 63 NGNSVIIRNIE-NPA--ISDIYTEHSCAVNVAKYSPSGFYIASGDIS-GKVRIWDTV--NKEHILKNEFHPIGGPIKDIG 136 (683)
Q Consensus 63 ~~~~i~v~~~~-~~~--~~~~~~~h~~~v~~~~~s~d~~~las~~~d-g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~ 136 (683)
.++.|.+||++ +++ .+.. ..|...+.+++|+|+|++|++++.+ +.|.+|++. +++.....
T Consensus 13 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~------------- 78 (343)
T 1ri6_A 13 ESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA------------- 78 (343)
T ss_dssp GGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE-------------
T ss_pred CCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecc-------------
Confidence 57899999985 332 2332 3577889999999999999888776 899999997 44321111
Q ss_pred eeeeecceeeeEeeccceEEEeec-CCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEE
Q psy15995 137 TLLSLTSIRNILVLSIGFYIASGD-ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFM 215 (683)
Q Consensus 137 ~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~ 215 (683)
.......+..++|+|+|++|++++ .++.|.+||+.++..............+.+++|+|+++++++++... ..+.+|+
T Consensus 79 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-~~v~~~d 157 (343)
T 1ri6_A 79 ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ-DRICLFT 157 (343)
T ss_dssp EEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGG-TEEEEEE
T ss_pred ccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCC-CEEEEEE
Confidence 111113578899999999886655 48899999994322111111122335689999999999988877332 2377888
Q ss_pred ccC-CCcee----eeec-CCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCC--Cce--eeecc---c---cccCeEEEE
Q psy15995 216 SET-GTSVG----EISG-QSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP--FKF--KMTKQ---E---HSRFVQAVR 279 (683)
Q Consensus 216 ~~~-~~~~~----~~~~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~--~~~--~~~~~---~---~~~~v~~~~ 279 (683)
.++ ++... .+.. ....+..++|+|+++++++++..++.+.+|+... ++. ..... . ....+..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 237 (343)
T 1ri6_A 158 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH 237 (343)
T ss_dssp ECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEE
T ss_pred ecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceE
Confidence 876 54332 2233 3457889999999997566666899999999853 332 11111 1 123577899
Q ss_pred ECCCCCEEE-EEcCCCcEEEEeCC--C--CeeEEeccCCccccCeEEEEEccCCCEEEEEE-CCCcEEEEEC--CCCce
Q psy15995 280 YSPSGSHFA-SAGFDGKVFLYDGA--S--ADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS-GDKTCKLWDI--ETKSV 350 (683)
Q Consensus 280 ~~~~~~~l~-~~~~dg~i~iw~~~--~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~--~~~~~ 350 (683)
|+|++++|+ +...++.|.+|++. + .+.+..+.. + ..+..++|+|++++|++++ .++.+.+|++ .+++.
T Consensus 238 ~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~--~-~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 238 ITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT--E-TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC--S-SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred ECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC--C-CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCcee
Confidence 999999777 45578999999998 3 334444432 3 3388999999999888887 5799999954 45543
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=1e-23 Score=204.69 Aligned_cols=279 Identities=11% Similarity=0.039 Sum_probs=214.6
Q ss_pred CCeEEEeeCCCCCeEEEec--------CCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEE-EecCCCCEEEEeCC
Q psy15995 45 GQPIVLGGDPKGKNFLYTN--------GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDTV 115 (683)
Q Consensus 45 ~~~~~~~~s~~~~~l~~~~--------~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~la-s~~~dg~i~iwd~~ 115 (683)
..+..+++||+|++++++. ++.|.+||..+++.+..+.. ...+..++|+|||++++ +...++.|.+||..
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 4567899999999998876 56899999999998877764 44578999999999655 55667899999999
Q ss_pred CcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeec--CCccEEEEeccccceeeeccccccCCCeeEEEE
Q psy15995 116 NKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGD--ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAW 193 (683)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~ 193 (683)
+++.+..+..+....+. ......+..++|+|+|+++++++ .++.|.+||..+++...... .....+..++|
T Consensus 120 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~ 192 (353)
T 3vgz_A 120 TGEVKGRLVLDDRKRTE-----EVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ--NTGKMSTGLAL 192 (353)
T ss_dssp TCCEEEEEESCCCCCCS-----SCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC--CCCTTCCCCEE
T ss_pred CCeeEEEEecCCCcccc-----ccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec--CCCCccceEEE
Confidence 99877766554211000 00012367899999999777765 57889999999887654443 23355889999
Q ss_pred cCCCCeEEEEecCCceEEEEEEccCCCceeeeec----CCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeecc
Q psy15995 194 SPDNQRMVVVGEGRERFGHVFMSETGTSVGEISG----QSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ 269 (683)
Q Consensus 194 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~ 269 (683)
+|++++++++..++ .+.+|+..+++....+.. +...+..++|+|+++.++++...++.|.+||..+++....+.
T Consensus 193 s~dg~~l~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 270 (353)
T 3vgz_A 193 DSEGKRLYTTNADG--ELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA 270 (353)
T ss_dssp ETTTTEEEEECTTS--EEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred CCCCCEEEEEcCCC--eEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence 99999999887654 367888888888777664 556788999999999756666667999999999998877766
Q ss_pred ccccCeEEEEECCCCCEEEEEc-CCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCC
Q psy15995 270 EHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK 338 (683)
Q Consensus 270 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 338 (683)
... ...++|+|+++++++++ .++.|.+||..+++.+..+.. ...+.+++|+|++++++++..++
T Consensus 271 ~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 271 APE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT---PTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp CSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC---CSEEEEEEECTTSCEEEEEEECC
T ss_pred cCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec---CCCCCeEEEcCCCCEEEEEEccc
Confidence 433 25699999999665554 689999999999998888763 34689999999999887776654
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=8.5e-24 Score=203.87 Aligned_cols=278 Identities=15% Similarity=0.111 Sum_probs=210.7
Q ss_pred eEEEe-cCCeEEEEeCCCCcccccccCcc-c-ceEEEEECCCCcEE-EEecCCCCEEEEeCCCcccccccccccCCCCcc
Q psy15995 58 NFLYT-NGNSVIIRNIENPAISDIYTEHS-C-AVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 133 (683)
Q Consensus 58 ~l~~~-~~~~i~v~~~~~~~~~~~~~~h~-~-~v~~~~~s~d~~~l-as~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 133 (683)
+++++ .++.|.+||..+++.+..+.... . .+.+++|+|||+++ ++++.++.|.+||+.+++.+..+.....+
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~---- 78 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE---- 78 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT----
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc----
Confidence 44544 68899999999998887766322 2 58899999999766 55667889999999998776655432100
Q ss_pred cceeeeeecceeeeEeeccceEEEeec------------CCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEE
Q psy15995 134 DIGTLLSLTSIRNILVLSIGFYIASGD------------ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMV 201 (683)
Q Consensus 134 ~~~~~~~~~~i~~~~~s~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 201 (683)
.....+..++|+|+|++|++++ .++.|.+||+.+++.+..... ...+.+++|+||+++++
T Consensus 79 -----~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~ 150 (337)
T 1pby_B 79 -----ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA---PRQITMLAWARDGSKLY 150 (337)
T ss_dssp -----EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC---CSSCCCEEECTTSSCEE
T ss_pred -----cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC---CCCcceeEECCCCCEEE
Confidence 0113567899999999888885 579999999998876544332 35688899999999988
Q ss_pred EEecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCC-----------------------eEEEEc
Q psy15995 202 VVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN-----------------------TIAVFE 258 (683)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----------------------~i~iw~ 258 (683)
++.. .+.+|+.++++....+..+... ..+.|+|++..+++++..++ .|.+||
T Consensus 151 ~~~~----~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 225 (337)
T 1pby_B 151 GLGR----DLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD 225 (337)
T ss_dssp EESS----SEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred EeCC----eEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEe
Confidence 8832 2788998888877766654411 13378999886444443333 468999
Q ss_pred CCCCcee-eeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECC
Q psy15995 259 GPPFKFK-MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD 337 (683)
Q Consensus 259 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 337 (683)
..+++.. ..+..+...+.+++|+|++++++++ ++.|.+||+.+++.+..+.. ...+.+++|+|+++++++++.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~ 300 (337)
T 1pby_B 226 LETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL---PHSYYSVNVSTDGSTVWLGGAL 300 (337)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC---SSCCCEEEECTTSCEEEEESBS
T ss_pred CCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC---CCceeeEEECCCCCEEEEEcCC
Confidence 9888764 2234556678899999999999888 69999999999988877753 3467899999999999999889
Q ss_pred CcEEEEECCCCceeeEEEec
Q psy15995 338 KTCKLWDIETKSVVSEFIMG 357 (683)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~ 357 (683)
+.|.+||+.+++.+..+...
T Consensus 301 ~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 301 GDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp SEEEEEETTTCCEEEEEECG
T ss_pred CcEEEEECcCCcEEEEEEcC
Confidence 99999999999988877654
No 145
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=3.2e-24 Score=202.80 Aligned_cols=255 Identities=15% Similarity=0.138 Sum_probs=192.4
Q ss_pred cCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCC-cccccccccccCCCCcccceeeeee
Q psy15995 63 NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN-KEHILKNEFHPIGGPIKDIGTLLSL 141 (683)
Q Consensus 63 ~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (683)
.++.|.+||+.+++.. .+..|...|.+++|+|||++|++++ ++.|.+||+.+ ++.......+. .
T Consensus 20 ~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~-------------~ 84 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA-------------T 84 (297)
T ss_dssp CCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTC-------------C
T ss_pred cceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccc-------------c
Confidence 4679999999998876 4566999999999999999999986 77999999998 75544332221 1
Q ss_pred cceeeeEeeccceEEEeec--CCccEEEEec--cccceeeeccccccCCCeeEEEEcCCCCeEEEEe-cCCceEEEEEEc
Q psy15995 142 TSIRNILVLSIGFYIASGD--ISGKVRIWDT--VNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVG-EGRERFGHVFMS 216 (683)
Q Consensus 142 ~~i~~~~~s~~~~~l~~~~--~d~~i~iwd~--~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~~~~~~~~~~ 216 (683)
..+.+++|+|+|++|++++ .++...||.+ .+++. . .+.. ...+..++|+||++.+++.+ .+.. ..+|..
T Consensus 85 ~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~--~~~~-~~~~~~~~~spdg~~l~~~~~~~~~--~~l~~~ 158 (297)
T 2ojh_A 85 ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-R--LMTK-NLPSYWHGWSPDGKSFTYCGIRDQV--FDIYSM 158 (297)
T ss_dssp CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-E--ECCS-SSSEEEEEECTTSSEEEEEEEETTE--EEEEEE
T ss_pred ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-E--Eeec-CCCccceEECCCCCEEEEEECCCCc--eEEEEE
Confidence 4578899999999999988 3345555554 44432 1 1222 24588999999999988544 4433 567775
Q ss_pred cC-CCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCC-CCceeeeccccccCeEEEEECCCCCEEEEEcCC-
Q psy15995 217 ET-GTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP-PFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD- 293 (683)
Q Consensus 217 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d- 293 (683)
+. +.....+..+...+.+++|+|+++.+++++..++.+++|++. .......+..|...+.+++|+|++++|++++.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 238 (297)
T 2ojh_A 159 DIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDA 238 (297)
T ss_dssp ETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEET
T ss_pred ECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCC
Confidence 43 344566777888999999999999745555568999999876 555667777788889999999999999888765
Q ss_pred ----------CcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCC
Q psy15995 294 ----------GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK 338 (683)
Q Consensus 294 ----------g~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 338 (683)
+.|++||+.+++.........|...+.+++|+|+++.|++++.+.
T Consensus 239 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 239 DVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp TCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 569999998887644443223777899999999999998887654
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=1.1e-23 Score=203.00 Aligned_cols=299 Identities=10% Similarity=0.044 Sum_probs=202.1
Q ss_pred EEEEeeCCCeEEEEcCCCCceeeecccccc--CeEEEEECCCCCEE-EEEcCCCcEEEEeCCCCeeEEeccCCc---ccc
Q psy15995 244 RIITGSEDNTIAVFEGPPFKFKMTKQEHSR--FVQAVRYSPSGSHF-ASAGFDGKVFLYDGASADLVSELGNPA---HKG 317 (683)
Q Consensus 244 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~---~~~ 317 (683)
.+++++.++.|.+||..+++....+..... .+..++|+|+++.+ +++..++.|.+||+.+++.+..+.... +..
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 82 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence 488999999999999999988877653322 47889999999865 455667899999999998887765322 123
Q ss_pred CeEEEEEccCCCEEEEEE------------CCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEE
Q psy15995 318 GVYAVAWKPDGTQLLTAS------------GDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISY 385 (683)
Q Consensus 318 ~i~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~ 385 (683)
.+..++|+|++++++++. .++.|.+||+.+++....+.
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~------------------------------ 132 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE------------------------------ 132 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE------------------------------
T ss_pred cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe------------------------------
Confidence 677899999999998886 56889999988776543321
Q ss_pred EecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEEEEcCC
Q psy15995 386 LDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDD 465 (683)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~ 465 (683)
....+.+++|+|++++++++ ++.|.+||+.+++...............+..++..++..+..+
T Consensus 133 ---------------~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 195 (337)
T 1pby_B 133 ---------------APRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESS 195 (337)
T ss_dssp ---------------CCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTT
T ss_pred ---------------CCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCC
Confidence 12345678899999988888 6889999998877654442211000001111122221111111
Q ss_pred eEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCCcE
Q psy15995 466 TIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKV 545 (683)
Q Consensus 466 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 545 (683)
....+. .......++.... ......|
T Consensus 196 ~~~~~~-----------------------------------------------------~~~~~~~~~~~~~-~~~~~~v 221 (337)
T 1pby_B 196 GVMATP-----------------------------------------------------FYTARKDIDPADP-TAYRTGL 221 (337)
T ss_dssp TEEEEE-----------------------------------------------------EEEEBTTSCTTSG-GGEEEEE
T ss_pred Cceeee-----------------------------------------------------eeccccccccccc-cccccce
Confidence 000000 0000000000000 0001158
Q ss_pred EEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEeCCCeEEEEECCCCccccccceeeecccEEEEEecCCCCeEEE
Q psy15995 546 HIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVAS 625 (683)
Q Consensus 546 ~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~ 625 (683)
.+||+.+++........+...+..++|+||+++++++ ++.|.+||+.+++...... ....+.+++|+|||++|++
T Consensus 222 ~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~ 296 (337)
T 1pby_B 222 LTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP---LPHSYYSVNVSTDGSTVWL 296 (337)
T ss_dssp EEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE---CSSCCCEEEECTTSCEEEE
T ss_pred EEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec---CCCceeeEEECCCCCEEEE
Confidence 8999998876522223355678899999999999988 6999999999988765433 3356789999999999999
Q ss_pred eecCCcEEEEeCCCCceeeEeec
Q psy15995 626 GSLDTTIIIWSLASPAKHIIIKN 648 (683)
Q Consensus 626 ~~~d~~v~iw~~~~~~~~~~~~~ 648 (683)
++.++.|++||+.+++....+..
T Consensus 297 ~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 297 GGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp ESBSSEEEEEETTTCCEEEEEEC
T ss_pred EcCCCcEEEEECcCCcEEEEEEc
Confidence 99999999999999988877755
No 147
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=5.1e-23 Score=199.79 Aligned_cols=276 Identities=12% Similarity=0.068 Sum_probs=217.6
Q ss_pred cccceEEEEECCCCcEEEEecC-------CCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEE
Q psy15995 84 HSCAVNVAKYSPSGFYIASGDI-------SGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYI 156 (683)
Q Consensus 84 h~~~v~~~~~s~d~~~las~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 156 (683)
....+..++|+|+|++|++++. ++.|.+||..+++.+..+... ..+..++++|+|+++
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---------------~~~~~~~~s~dg~~l 103 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND---------------LKPFGATINNTTQTL 103 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES---------------SCCCSEEEETTTTEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC---------------CCcceEEECCCCCEE
Confidence 4556889999999998887763 567999999998777665443 346788999999855
Q ss_pred E-eecCCccEEEEeccccceeeeccccccCC-------CeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeecC
Q psy15995 157 A-SGDISGKVRIWDTVNKEHILKNEFHPIGG-------PIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ 228 (683)
Q Consensus 157 ~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-------~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (683)
+ +...++.|.+||..+++.+.......... .+.+++|+|++++++++....+..+.+|+.++++....+..+
T Consensus 104 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 183 (353)
T 3vgz_A 104 WFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT 183 (353)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCC
T ss_pred EEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCC
Confidence 4 55667999999999988665544432111 268899999999998888554555788898889888888767
Q ss_pred CcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccc----cccCeEEEEECCCCCEEEEEcC-CCcEEEEeCCC
Q psy15995 229 SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE----HSRFVQAVRYSPSGSHFASAGF-DGKVFLYDGAS 303 (683)
Q Consensus 229 ~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~~~ 303 (683)
...+..++|+|+++. +++++.++.+.+||..+++....+.. +...+..++|+|+++.+++++. ++.|.+||..+
T Consensus 184 ~~~~~~~~~s~dg~~-l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 262 (353)
T 3vgz_A 184 GKMSTGLALDSEGKR-LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN 262 (353)
T ss_dssp CTTCCCCEEETTTTE-EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT
T ss_pred CCccceEEECCCCCE-EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 777899999999996 77788899999999999988776653 5567889999999997776654 58999999999
Q ss_pred CeeEEeccCCccccCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCC
Q psy15995 304 ADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS-GDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSG 381 (683)
Q Consensus 304 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 381 (683)
++.+..+.. .. ...++|+|++++++++. .++.|.+||..+++.+..+.... ....+.+++++++++++..++
T Consensus 263 ~~~~~~~~~--~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 263 GNILAKVAA--PE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT--HPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp CCEEEEEEC--SS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS--EEEEEEECTTSCEEEEEEECC
T ss_pred CcEEEEEEc--CC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC--CCCeEEEcCCCCEEEEEEccc
Confidence 998887764 22 25799999999776666 68999999999998887775543 556778888999888777654
No 148
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=4.6e-23 Score=199.26 Aligned_cols=304 Identities=13% Similarity=0.116 Sum_probs=202.4
Q ss_pred CeEEEEeeCCCeEEEEcCC-CCce-eeeccccccCeEEEEECCCCCEEEEEcCC-CcEEEEeCC--CCee--EEeccCCc
Q psy15995 242 PFRIITGSEDNTIAVFEGP-PFKF-KMTKQEHSRFVQAVRYSPSGSHFASAGFD-GKVFLYDGA--SADL--VSELGNPA 314 (683)
Q Consensus 242 ~~~l~~~~~d~~i~iw~~~-~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iw~~~--~~~~--~~~~~~~~ 314 (683)
++++++++.++.|++|++. +++. ......+...+.+++|+|++++|++++.+ +.|.+|++. +++. +..+.
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--- 81 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA--- 81 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE---
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccc---
Confidence 3446666889999999985 3322 22223467789999999999988888876 899999987 5543 33333
Q ss_pred cccCeEEEEEccCCCEEEEEEC-CCcEEEEECCCC---ceeeEEEecCcceeceEEEEecCCEEEEEe-cCCcEEEEecC
Q psy15995 315 HKGGVYAVAWKPDGTQLLTASG-DKTCKLWDIETK---SVVSEFIMGNQVEDQQVSCLWQGDYLLTVS-LSGFISYLDVN 389 (683)
Q Consensus 315 ~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~i~~~~~~ 389 (683)
....+..++|+|+++++++++. ++.|.+||+..+ +....+ ........+.++++++++++++ .++.+.+||+.
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~ 159 (343)
T 1ri6_A 82 LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV--EGLDGCHSANISPDNRTLWVPALKQDRICLFTVS 159 (343)
T ss_dssp CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE--CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc--cCCCCceEEEECCCCCEEEEecCCCCEEEEEEec
Confidence 2237889999999998877765 788999999533 233222 2233466788899999888887 89999999998
Q ss_pred CCCccee----eeee-ccccEEEEEEeCCCCEEEEEe-CCCcEEEEcCCC--CCcceeccCCCCcceeEEEEeCCeEEEE
Q psy15995 390 NPSTPIR----VIKG-HNKPITALALSPDRGTVFTGS-HDGFITRWNAKT--GENDRVQGAGHGNQINGMKATGELLYTC 461 (683)
Q Consensus 390 ~~~~~~~----~~~~-~~~~v~~~~~~~~~~~l~~~~-~dg~i~~w~~~~--~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 461 (683)
....... .... ....+..++|+|+++++++++ .++.|.+|++.. ++......
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~-------------------- 219 (343)
T 1ri6_A 160 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQT-------------------- 219 (343)
T ss_dssp TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEE--------------------
T ss_pred CCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEee--------------------
Confidence 6333221 2222 344788999999999776554 789999999854 22110000
Q ss_pred EcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEE-c
Q psy15995 462 GIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVG-G 540 (683)
Q Consensus 462 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 540 (683)
+-.+... ......+..++++|++++|+++ .
T Consensus 220 -------~~~~~~~------------------------------------------~~~~~~~~~i~~s~dg~~l~v~~~ 250 (343)
T 1ri6_A 220 -------LDMMPEN------------------------------------------FSDTRWAADIHITPDGRHLYACDR 250 (343)
T ss_dssp -------EECSCTT------------------------------------------CCSCCCEEEEEECTTSSEEEEEET
T ss_pred -------ccccCcc------------------------------------------ccccCCccceEECCCCCEEEEEec
Confidence 0000000 0001234679999999888754 5
Q ss_pred CCCcEEEEEcC--CCccCcceeecCCcCeeEEEECCCCCEEEEEe-CCCeEEEEEC--CCCccccccceeeecccEEEEE
Q psy15995 541 ADSKVHIYELN--NKSLSPKAELDHLGPVTDCSFSPSNEYLVASD-AHRKVVLYRV--PDFELAHNKEWGFHSAKVNCVA 615 (683)
Q Consensus 541 ~dg~i~i~d~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~~~--~~~~~~~~~~~~~h~~~v~~~~ 615 (683)
.++.|.+|++. ++.............+..++|+|++++|++++ .++.+.+|++ .++++....... ......+++
T Consensus 251 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~-~g~~p~~i~ 329 (343)
T 1ri6_A 251 TASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYA-VGQGPMWVV 329 (343)
T ss_dssp TTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEE-CSSSCCEEE
T ss_pred CCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccc-cCCCCeeEE
Confidence 78999999998 33332222233334488999999999988887 6899999954 466554333332 224566777
Q ss_pred ecCCC
Q psy15995 616 WSPDS 620 (683)
Q Consensus 616 ~s~d~ 620 (683)
|.|+.
T Consensus 330 ~~~~~ 334 (343)
T 1ri6_A 330 VNAHE 334 (343)
T ss_dssp EEEEC
T ss_pred EEccc
Confidence 77654
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=2.7e-23 Score=196.41 Aligned_cols=260 Identities=13% Similarity=0.097 Sum_probs=190.4
Q ss_pred EecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccc-cceeeecc
Q psy15995 102 SGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVN-KEHILKNE 180 (683)
Q Consensus 102 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~ 180 (683)
+++.|++|++||+.+++..... .+. ..+.+++|+|+|++|++++ ++.|.+||+.+ ++......
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~-~~~--------------~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~ 80 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVW-QTP--------------ELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDT 80 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEE-EES--------------SCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCC
T ss_pred CCCcceeEEEEeCCCCceeeec-cCC--------------cceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecc
Confidence 3567889999999988654322 222 6789999999999999986 78999999998 76443221
Q ss_pred ccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEcc--CCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEc
Q psy15995 181 FHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE--TGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE 258 (683)
Q Consensus 181 ~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~ 258 (683)
......+.+++|+||+++++++....+....+|.++ .+. ...+..+. .+..++|+|+++.+++++..++.+++|+
T Consensus 81 -~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~ 157 (297)
T 2ojh_A 81 -GFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYS 157 (297)
T ss_dssp -TTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred -ccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEE
Confidence 222467899999999999999984432234555554 333 33444443 4899999999997566888999999998
Q ss_pred CCC-CceeeeccccccCeEEEEECCCCCEEEEEc-CCCcEEEEeCC-CCeeEEeccCCccccCeEEEEEccCCCEEEEEE
Q psy15995 259 GPP-FKFKMTKQEHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGA-SADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS 335 (683)
Q Consensus 259 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 335 (683)
++. ......+..+...+.+++|+|+++.|+.++ .++.+.+|++. .+.....+.. +...+..++|+|++++|++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~ 235 (297)
T 2ojh_A 158 MDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD--SAYGDWFPHPSPSGDKVVFVS 235 (297)
T ss_dssp EETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC--CSEEEEEEEECTTSSEEEEEE
T ss_pred EECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec--CCcccCCeEECCCCCEEEEEE
Confidence 532 233456667888899999999999887665 58899999875 4455555543 677899999999999998887
Q ss_pred CC-----------CcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeecccc
Q psy15995 336 GD-----------KTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKP 404 (683)
Q Consensus 336 ~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 404 (683)
.+ +.|.+||+.+++.... ..+.+|...
T Consensus 236 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~------------------------------------------~~~~~~~~~ 273 (297)
T 2ojh_A 236 YDADVFDHPRDLDVRVQLMDMDGGNVETL------------------------------------------FDLFGGQGT 273 (297)
T ss_dssp EETTCCSCCSSEEEEEEEEETTSCSCEEE------------------------------------------EEEEESTTT
T ss_pred cCCCCCcccccCceEEEEEecCCCCceee------------------------------------------eccCCCCcc
Confidence 65 4588888876643221 223456777
Q ss_pred EEEEEEeCCCCEEEEEeCCC
Q psy15995 405 ITALALSPDRGTVFTGSHDG 424 (683)
Q Consensus 405 v~~~~~~~~~~~l~~~~~dg 424 (683)
+.+++|+|++++|++++.+.
T Consensus 274 ~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 274 MNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SCSCCBCTTSSEEEEEEECC
T ss_pred cccceECCCCCEEEEEEecc
Confidence 88899999999988877653
No 150
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.91 E-value=1.7e-22 Score=195.67 Aligned_cols=282 Identities=10% Similarity=0.053 Sum_probs=202.5
Q ss_pred EEeeCCCCCeEEEe-cCCeEEEEeCCCCcccccccCcc-cceEEEEECCCCcEEE-EecCCCCEEEEeCCCccccccccc
Q psy15995 49 VLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEHS-CAVNVAKYSPSGFYIA-SGDISGKVRIWDTVNKEHILKNEF 125 (683)
Q Consensus 49 ~~~~s~~~~~l~~~-~~~~i~v~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~la-s~~~dg~i~iwd~~~~~~~~~~~~ 125 (683)
.+++++++++++++ .++.|.+||..+++.+..+..+. ..+..++|+|||++++ +...++.|.+||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 35678888888876 57899999999998887776443 2578999999998664 556788999999999877655543
Q ss_pred ccCCCCcccceeeeeecceeeeEeeccceEEEeecCC------------ccEEEEeccccceeeeccccccCCCeeEEEE
Q psy15995 126 HPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDIS------------GKVRIWDTVNKEHILKNEFHPIGGPIKDIAW 193 (683)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~ 193 (683)
..... .....+..++|+|||++|++++.+ +.|.+||+.+++.........+...+.+++|
T Consensus 84 ~~~~~--------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 155 (349)
T 1jmx_B 84 SSVPG--------EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRA 155 (349)
T ss_dssp CCSTT--------EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEE
T ss_pred ccccc--------cccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeE
Confidence 21000 001347789999999999998865 8999999998654333222233456889999
Q ss_pred cCCCCeEEEEecCCceEEEEEEccCCCceeeeecCCc------------------------CeEEEEeecCCCe------
Q psy15995 194 SPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSK------------------------PINSCDFKPSRPF------ 243 (683)
Q Consensus 194 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~v~~~~~~~~~~~------ 243 (683)
+||++ +++.+.+ +.+|+..+++....+..+.. ....+++++++..
T Consensus 156 s~dg~-l~~~~~~----i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 230 (349)
T 1jmx_B 156 ADDGS-LYVAGPD----IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD 230 (349)
T ss_dssp CTTSC-EEEESSS----EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE
T ss_pred CCCCc-EEEccCc----EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccc
Confidence 99999 6664433 77888888887766654320 2344566554321
Q ss_pred ----EEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECC-CCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccC
Q psy15995 244 ----RIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSP-SGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGG 318 (683)
Q Consensus 244 ----~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 318 (683)
.+.....++.+++|+. ..+...+..++++| ++++++++ ++.|.+||+.+++.+..+.. ...
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~---~~~ 296 (349)
T 1jmx_B 231 LLYGYLSVDLKTGKTHTQEF---------ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL---DHT 296 (349)
T ss_dssp EEEEEEEEETTTCCEEEEEE---------EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC---SSC
T ss_pred cceeEEEEeccCCcEEeccc---------ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC---CCC
Confidence 1112233344444443 22556788999999 99998888 78999999999998877753 345
Q ss_pred eEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEec
Q psy15995 319 VYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMG 357 (683)
Q Consensus 319 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 357 (683)
+.+++|+|++++|++++.++.|.+||+.+++.+..+...
T Consensus 297 ~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 297 YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp CCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred ccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 779999999999998888999999999999888777544
No 151
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.90 E-value=4.8e-22 Score=211.59 Aligned_cols=364 Identities=12% Similarity=0.053 Sum_probs=234.0
Q ss_pred CeEEEeeCCCCCeEEEecCCeEEEEeCCCCcccccccCcccc-----eEEEEECCCCcEEEEecCC---------CCEEE
Q psy15995 46 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA-----VNVAKYSPSGFYIASGDIS---------GKVRI 111 (683)
Q Consensus 46 ~~~~~~~s~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~h~~~-----v~~~~~s~d~~~las~~~d---------g~i~i 111 (683)
....++|+|||++++.+ ++.|.+||+.+++....+.+|... ...++|||||++|+.++.+ +.+.+
T Consensus 18 ~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~ 96 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (740)
T ss_dssp CCCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred cccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence 45578899999999887 899999999999987777877643 2447899999999998875 56779
Q ss_pred EeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCC-----
Q psy15995 112 WDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGG----- 186 (683)
Q Consensus 112 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----- 186 (683)
||+.+++... +..++ ..+...+|||||+.||.+. ++.|++|++.+++... ....+...
T Consensus 97 ~d~~~~~~~~-l~~~~--------------~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~-lt~~g~~~~~~~g 159 (740)
T 4a5s_A 97 YDLNKRQLIT-EERIP--------------NNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYR-ITWTGKEDIIYNG 159 (740)
T ss_dssp EETTTTEECC-SSCCC--------------TTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEE-CCSCCBTTTEEES
T ss_pred EECCCCcEEE-cccCC--------------CcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEE-EcCCCCccceecC
Confidence 9999986543 32222 4678899999999999884 6899999998876432 22222222
Q ss_pred ------------CeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeE
Q psy15995 187 ------------PIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTI 254 (683)
Q Consensus 187 ------------~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 254 (683)
....+.|||||+.|+....+... +.+|........ ..+...+..+.+.+.|.. .....|
T Consensus 160 ~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~-v~~~~~~~~~~~---~~~~~~~~~~~yp~~G~~-----~~~~~l 230 (740)
T 4a5s_A 160 ITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTE-VPLIEYSFYSDE---SLQYPKTVRVPYPKAGAV-----NPTVKF 230 (740)
T ss_dssp BCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTT-CCEEEEEECCST---TCSSCEEEEEECCBTTSC-----CCEEEE
T ss_pred cccccccchhcCCCcceEECCCCCEEEEEEEcccC-CceEEEEeecCC---CCCCCcceeecCCCCcCc-----CCeeEE
Confidence 22458999999999988754332 122222111000 034556677777777642 223368
Q ss_pred EEEcCCC---C---ceeeecc-----ccccCeEEEEECCCCCEEEEEcC----CCcEEEEeCCCCe----eEEeccC--C
Q psy15995 255 AVFEGPP---F---KFKMTKQ-----EHSRFVQAVRYSPSGSHFASAGF----DGKVFLYDGASAD----LVSELGN--P 313 (683)
Q Consensus 255 ~iw~~~~---~---~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iw~~~~~~----~~~~~~~--~ 313 (683)
++||+.+ + +...... +|...+..++|+|||+.++.... +..|++||+.+++ +...... .
T Consensus 231 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~ 310 (740)
T 4a5s_A 231 FVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEM 310 (740)
T ss_dssp EEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEE
T ss_pred EEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeec
Confidence 9999988 7 3332221 37788999999999996665532 3379999998887 2221110 1
Q ss_pred ccccCeE-----EEEEccCCCEEE-EEEC-C--CcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecC----
Q psy15995 314 AHKGGVY-----AVAWKPDGTQLL-TASG-D--KTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLS---- 380 (683)
Q Consensus 314 ~~~~~i~-----~~~~~~~~~~l~-~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 380 (683)
.+...+. ..+|+|||+.++ ..+. + ..|.+||+.+++... +..+ ....... ..++++.++..+..
T Consensus 311 ~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g-~~~v~~~-~~~d~~~i~f~~~~~~~~ 387 (740)
T 4a5s_A 311 STTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKG-TWEVIGI-EALTSDYLYYISNEYKGM 387 (740)
T ss_dssp CSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCS-SSCEEEE-EEECSSEEEEEESCGGGC
T ss_pred cCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-cccC-CEEEEEE-EEEeCCEEEEEEecCCCC
Confidence 2443333 688999999877 6653 3 358888888765432 2222 2222221 22556666655543
Q ss_pred -CcEEEEecCCCCccee-eee----eccccEEEEEEeCCCCEEEEEeCC---CcEEEEcCCCCCccee
Q psy15995 381 -GFISYLDVNNPSTPIR-VIK----GHNKPITALALSPDRGTVFTGSHD---GFITRWNAKTGENDRV 439 (683)
Q Consensus 381 -g~i~~~~~~~~~~~~~-~~~----~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~w~~~~~~~~~~ 439 (683)
+...+|.+........ .+. +.........|+|++++++..... ..+.+++..+++....
T Consensus 388 ~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~ 455 (740)
T 4a5s_A 388 PGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRV 455 (740)
T ss_dssp TTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEE
T ss_pred CceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEE
Confidence 3455555443222111 222 123567889999999988755443 3678888776654433
No 152
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.90 E-value=2.3e-22 Score=208.57 Aligned_cols=271 Identities=12% Similarity=0.048 Sum_probs=198.5
Q ss_pred CCCeEEEeeCCCCCeEEEec--CCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecC---CCCEEEEeCCC--
Q psy15995 44 RGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI---SGKVRIWDTVN-- 116 (683)
Q Consensus 44 ~~~~~~~~~s~~~~~l~~~~--~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~---dg~i~iwd~~~-- 116 (683)
...+..++|||||++||+++ ++.+.||++++++..+....+...+..++|||| +.+++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 44688999999999999873 789999999877765544334479999999999 88887765 45566765543
Q ss_pred cccccccccccCCCCcccceeeeeecceeeeEeeccce--EEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEc
Q psy15995 117 KEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGF--YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWS 194 (683)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s 194 (683)
......+... ......+|+|||+ .+++++.+ .+.+||+.+++...... +.. .+++|+
T Consensus 100 ~g~~~~l~~~---------------~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~---~~~--~~~~~s 158 (582)
T 3o4h_A 100 PGEEQRLEAV---------------KPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELAR---LPG--FGFVSD 158 (582)
T ss_dssp TTCCEECTTS---------------CSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEE---ESS--CEEEEE
T ss_pred CCccccccCC---------------CCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeec---CCC--ceEEEC
Confidence 2111111111 2233568888885 44455544 45599999886543322 112 899999
Q ss_pred CCCCeEEEEecCCc--eEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCC--eEEEEcCCCCceeeeccc
Q psy15995 195 PDNQRMVVVGEGRE--RFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN--TIAVFEGPPFKFKMTKQE 270 (683)
Q Consensus 195 ~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~iw~~~~~~~~~~~~~ 270 (683)
|||+++++++.+.. ..+.+|+.++++. ..+..|...+..++|+|||+. |+++..++ .|++||..+++.. .+..
T Consensus 159 pDG~~la~~~~~~~~~~~i~~~d~~~g~~-~~l~~~~~~~~~~~~SpDG~~-l~~~~~~~~~~i~~~d~~~~~~~-~~~~ 235 (582)
T 3o4h_A 159 IRGDLIAGLGFFGGGRVSLFTSNLSSGGL-RVFDSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVE-DLEL 235 (582)
T ss_dssp EETTEEEEEEEEETTEEEEEEEETTTCCC-EEECCSSCEEEEEEECTTSCE-EEEEECSSCEEEEEECTTTCCEE-ECCC
T ss_pred CCCCEEEEEEEcCCCCeEEEEEcCCCCCc-eEeecCCCccccceECCCCCE-EEEccCCCeeEEEEEcCCCCcEE-EccC
Confidence 99999998775522 3355666666654 477889999999999999996 77888888 8999999998877 7777
Q ss_pred cccCeEEEE--------ECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCc---
Q psy15995 271 HSRFVQAVR--------YSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKT--- 339 (683)
Q Consensus 271 ~~~~v~~~~--------~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~--- 339 (683)
|...+..++ |+|||..+++++.++.+++|++ ++.... ..+.+.+++|+ +++.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~-----~~~~v~~~~~s-dg~~l~~~s~~~~p~~ 307 (582)
T 3o4h_A 236 PSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA-----PQGNHGRVVLW-RGKLVTSHTSLSTPPR 307 (582)
T ss_dssp SCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC-----CSSEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred CCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc-----CCCceEEEEec-CCEEEEEEcCCCCCCe
Confidence 777777777 9999998899999999999998 665542 34678899999 9998888877644
Q ss_pred EEEEECCC
Q psy15995 340 CKLWDIET 347 (683)
Q Consensus 340 i~iwd~~~ 347 (683)
+.+||...
T Consensus 308 l~~~d~~~ 315 (582)
T 3o4h_A 308 IVSLPSGE 315 (582)
T ss_dssp EEEETTCC
T ss_pred EEEEcCCC
Confidence 66666553
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.90 E-value=2.1e-22 Score=208.85 Aligned_cols=272 Identities=10% Similarity=0.017 Sum_probs=197.6
Q ss_pred cccceEEEEECCCCcEEEEecC-CCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecC-
Q psy15995 84 HSCAVNVAKYSPSGFYIASGDI-SGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDI- 161 (683)
Q Consensus 84 h~~~v~~~~~s~d~~~las~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~- 161 (683)
+..+|.+++|+|||++||+++. ||+++||++.+++... +..+. ...+..++|+|| +.+++++.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~-------------~~~~~~~~~spd-~~l~~~~~~ 84 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREP-------------INSVLDPHYGVG-RVILVRDVS 84 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSC-------------CSEECEECTTCS-EEEEEEECS
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eeccc-------------ccccccccCCCC-eEEEEeccC
Confidence 3668999999999999999876 9999999986654332 22221 036788999999 77776664
Q ss_pred --CccEEEEeccc---cceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeecCCcCeEEEE
Q psy15995 162 --SGKVRIWDTVN---KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCD 236 (683)
Q Consensus 162 --d~~i~iwd~~~---~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 236 (683)
+....+|.+.. +... .+... ......+|+||++.++.++...+.. .+|+.++++.......+. .+++
T Consensus 85 ~g~~~~~l~~~~~~~~g~~~---~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~-~l~d~~~g~~~~l~~~~~---~~~~ 156 (582)
T 3o4h_A 85 KGAEQHALFKVNTSRPGEEQ---RLEAV-KPMRILSGVDTGEAVVFTGATEDRV-ALYALDGGGLRELARLPG---FGFV 156 (582)
T ss_dssp TTSCCEEEEEEETTSTTCCE---ECTTS-CSBEEEEEEECSSCEEEEEECSSCE-EEEEEETTEEEEEEEESS---CEEE
T ss_pred CCCcceEEEEEeccCCCccc---cccCC-CCceeeeeCCCCCeEEEEecCCCCc-eEEEccCCcEEEeecCCC---ceEE
Confidence 45566665543 2221 11111 2345679999998766665544443 388888876555444333 8999
Q ss_pred eecCCCeEEEEeeCC----CeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcCCC--cEEEEeCCCCeeEEec
Q psy15995 237 FKPSRPFRIITGSED----NTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDG--KVFLYDGASADLVSEL 310 (683)
Q Consensus 237 ~~~~~~~~l~~~~~d----~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~ 310 (683)
|+|+|+. +++++.+ +.|++||+.+++.. .+..|...+..++|+|||+.|+++..++ .|++||+.+++.. .+
T Consensus 157 ~spDG~~-la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~ 233 (582)
T 3o4h_A 157 SDIRGDL-IAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL 233 (582)
T ss_dssp EEEETTE-EEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC
T ss_pred ECCCCCE-EEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec
Confidence 9999996 7766666 78999998888765 5677888899999999999999888888 8999999998877 54
Q ss_pred cCCccccCeEEEE--------EccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCc
Q psy15995 311 GNPAHKGGVYAVA--------WKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGF 382 (683)
Q Consensus 311 ~~~~~~~~i~~~~--------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 382 (683)
.. +...+..++ |+|||..+++++.++.+++|++ ++...
T Consensus 234 ~~--~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~------------------------------ 279 (582)
T 3o4h_A 234 EL--PSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE------------------------------ 279 (582)
T ss_dssp CC--SCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC------------------------------
T ss_pred cC--CCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec------------------------------
Confidence 43 666666666 9999988899999999999998 43321
Q ss_pred EEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCC---cEEEEcCCC
Q psy15995 383 ISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDG---FITRWNAKT 433 (683)
Q Consensus 383 i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~w~~~~ 433 (683)
.+.+.+.+++|+ +++.+++++.+. .+.+||..+
T Consensus 280 -----------------~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 280 -----------------APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp -----------------CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred -----------------cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 122456788888 888888877764 477777654
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=8.8e-22 Score=190.12 Aligned_cols=258 Identities=14% Similarity=0.113 Sum_probs=178.3
Q ss_pred CCeEEEeeCCCCCeEEEec---CCeEEEEeCCCCc--ccccccCcccceEEEEECCCCcEEEEec-CCCCEEEEeCCCc-
Q psy15995 45 GQPIVLGGDPKGKNFLYTN---GNSVIIRNIENPA--ISDIYTEHSCAVNVAKYSPSGFYIASGD-ISGKVRIWDTVNK- 117 (683)
Q Consensus 45 ~~~~~~~~s~~~~~l~~~~---~~~i~v~~~~~~~--~~~~~~~h~~~v~~~~~s~d~~~las~~-~dg~i~iwd~~~~- 117 (683)
..+..++|||||++++... ++.|.+|++++++ .+..+..|...+..++|+|||++|++++ .++.|.+|++...
T Consensus 40 ~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g 119 (347)
T 3hfq_A 40 QNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADG 119 (347)
T ss_dssp SCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTS
T ss_pred CCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCC
Confidence 4667799999999444443 4799999998776 3444456788899999999999888877 7789999999632
Q ss_pred c--cccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEecc-ccceeeeccccc-cCCCeeEEEE
Q psy15995 118 E--HILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTV-NKEHILKNEFHP-IGGPIKDIAW 193 (683)
Q Consensus 118 ~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~-~~~~i~~~~~ 193 (683)
. .+..+.....+ +. .......+.+++|+|||+.+++...++.|.+|++. +++......... ....+..++|
T Consensus 120 ~~~~~~~~~~~~~~-p~----~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~ 194 (347)
T 3hfq_A 120 ALTLTDTVQHSGHG-PR----PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF 194 (347)
T ss_dssp CEEEEEEEECCCCC-SS----TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred CeeecceeecCCCC-CC----ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence 2 22222111100 00 00111347789999999977777778999999998 454322222121 2236788999
Q ss_pred cCCCCeEEEEecCCceEEEEEEccC--CCc--eeeeecCC------cCeEEEEeecCCCeEEEEeeCCCeEEEEcCCC--
Q psy15995 194 SPDNQRMVVVGEGRERFGHVFMSET--GTS--VGEISGQS------KPINSCDFKPSRPFRIITGSEDNTIAVFEGPP-- 261 (683)
Q Consensus 194 s~~~~~l~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~------~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~-- 261 (683)
+|||++++++..... .+.+|+++. ++. ...+.... ..+..++|+|++++++++...++.|.+|++..
T Consensus 195 spdg~~l~v~~~~~~-~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g 273 (347)
T 3hfq_A 195 SPDGQYAFLAGELSS-QIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG 273 (347)
T ss_dssp CTTSSEEEEEETTTT-EEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG
T ss_pred CCCCCEEEEEeCCCC-EEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC
Confidence 999998888765543 357777764 432 22333322 35889999999997567777899999999873
Q ss_pred -CceeeeccccccCeEEEEECCCCCEEEEEcC-CCcEEEE--eCCCCeeEE
Q psy15995 262 -FKFKMTKQEHSRFVQAVRYSPSGSHFASAGF-DGKVFLY--DGASADLVS 308 (683)
Q Consensus 262 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw--~~~~~~~~~ 308 (683)
.+.+..+..+...+..++|+|+|++|++++. ++.|.+| |.++++...
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 274 HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 3445555556667899999999998888765 4899999 555666543
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=3.7e-21 Score=185.70 Aligned_cols=269 Identities=13% Similarity=0.148 Sum_probs=180.0
Q ss_pred CCeEEEEeC--CCCcccc-cccCcccceEEEEECCCCcEEEEecC---CCCEEEEeCCCccc--ccccccccCCCCcccc
Q psy15995 64 GNSVIIRNI--ENPAISD-IYTEHSCAVNVAKYSPSGFYIASGDI---SGKVRIWDTVNKEH--ILKNEFHPIGGPIKDI 135 (683)
Q Consensus 64 ~~~i~v~~~--~~~~~~~-~~~~h~~~v~~~~~s~d~~~las~~~---dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~ 135 (683)
++.|.+|.+ ++++... ....+...+..++|+|||+ |++++. ++.|.+||+.+++. +..+..+
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~--------- 84 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAP--------- 84 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEE---------
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecC---------
Confidence 345666655 4555433 2345667788999999999 555443 68999999976642 2111111
Q ss_pred eeeeeecceeeeEeeccceEEEeec-CCccEEEEeccc-cceeeeccccc---------cCCCeeEEEEcCCCCeEEEEe
Q psy15995 136 GTLLSLTSIRNILVLSIGFYIASGD-ISGKVRIWDTVN-KEHILKNEFHP---------IGGPIKDIAWSPDNQRMVVVG 204 (683)
Q Consensus 136 ~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~iwd~~~-~~~~~~~~~~~---------~~~~i~~~~~s~~~~~l~~~~ 204 (683)
...+..++|+|||++|++++ .++.|.+|++.. +.......... ....+.+++|+|||+ ++++.
T Consensus 85 -----~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~ 158 (347)
T 3hfq_A 85 -----GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVID 158 (347)
T ss_dssp -----SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEE
T ss_pred -----CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEe
Confidence 25678899999999888877 789999999963 32211111111 112478899999999 55554
Q ss_pred cCCceEEEEEEcc-CCCcee--eeecC-CcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCC--Ccee--eeccccc----
Q psy15995 205 EGRERFGHVFMSE-TGTSVG--EISGQ-SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP--FKFK--MTKQEHS---- 272 (683)
Q Consensus 205 ~~~~~~~~~~~~~-~~~~~~--~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~--~~~~--~~~~~~~---- 272 (683)
.... .+.+|+.+ .++... .+..+ ...+..++|+|++++++++...++.+.+|++.. ++.. ..+....
T Consensus 159 ~~~~-~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 237 (347)
T 3hfq_A 159 LGSD-KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYT 237 (347)
T ss_dssp TTTT-EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCC
T ss_pred CCCC-EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCC
Confidence 4333 36788877 444322 22222 336788999999997666677889999999764 4432 2222222
Q ss_pred --cCeEEEEECCCCCEEE-EEcCCCcEEEEeCCCC---eeEEeccCCccccCeEEEEEccCCCEEEEEECC-CcEEEE--
Q psy15995 273 --RFVQAVRYSPSGSHFA-SAGFDGKVFLYDGASA---DLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD-KTCKLW-- 343 (683)
Q Consensus 273 --~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~iw-- 343 (683)
..+..++|+|+|++|+ +...++.|.+|++... +.+..+.. +...+..++|+||+++|++++.+ +.+.+|
T Consensus 238 ~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 238 AHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST--EGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp SCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC--SSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec--CCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence 4588999999999775 4555899999998732 34444432 45668899999999998888764 889999
Q ss_pred ECCCCcee
Q psy15995 344 DIETKSVV 351 (683)
Q Consensus 344 d~~~~~~~ 351 (683)
|..+++..
T Consensus 316 d~~tg~l~ 323 (347)
T 3hfq_A 316 DLTSGKLS 323 (347)
T ss_dssp CTTTCCEE
T ss_pred eCCCCeEE
Confidence 55556554
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.89 E-value=3.5e-21 Score=186.52 Aligned_cols=299 Identities=13% Similarity=0.078 Sum_probs=202.6
Q ss_pred EEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEE-ECCCcEEEEECCCCceeeEEE
Q psy15995 277 AVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTA-SGDKTCKLWDIETKSVVSEFI 355 (683)
Q Consensus 277 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~ 355 (683)
.++++++++++++++.++.|++||..+++.+..+... ....+..++|+|+++.++++ ..++.|.+||+.+++....+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP-DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECS-SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecC-CCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 3567888889999999999999999999988877641 11257889999999876554 468899999999998877766
Q ss_pred ecC-----cceeceEEEEecCCEEEEEecC------------CcEEEEecCCCCc--ceeeeeeccccEEEEEEeCCCCE
Q psy15995 356 MGN-----QVEDQQVSCLWQGDYLLTVSLS------------GFISYLDVNNPST--PIRVIKGHNKPITALALSPDRGT 416 (683)
Q Consensus 356 ~~~-----~~~~~~~~~~~~~~~l~~~~~~------------g~i~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~ 416 (683)
... ......+.+++++++++++..+ +.+.+||+..+.. .+.... +...+.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~- 160 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS- 160 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-
Confidence 433 2335678899999999998865 8999999976322 122233 344688999999999
Q ss_pred EEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCC
Q psy15995 417 VFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDEN 496 (683)
Q Consensus 417 l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (683)
+++++. .|.+||+.+++................. ...+.+|...... .
T Consensus 161 l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~------------~------- 208 (349)
T 1jmx_B 161 LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSA-----------PDVLYFWPHQSPR------------H------- 208 (349)
T ss_dssp EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCC-----------CBCCCCCCCCCTT------------C-------
T ss_pred EEEccC--cEEEEeCCCCceeccccccccCCccccC-----------ccceeeecCCCcc------------e-------
Confidence 666544 4999999988766544322100000000 0000011100000 0
Q ss_pred eEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCC-----------CEEEEEcCCCcEEEEEcCCCccCcceeecCCc
Q psy15995 497 TLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEH-----------GLVAVGGADSKVHIYELNNKSLSPKAELDHLG 565 (683)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 565 (683)
.. ..+..+++++++ .++.....++.+.+++... +..
T Consensus 209 -~~----------------------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 255 (349)
T 1jmx_B 209 -EF----------------------SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD----------LTE 255 (349)
T ss_dssp -EE----------------------EEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE----------CSS
T ss_pred -eE----------------------EeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccccc----------CCC
Confidence 00 001223333332 1233444456666665522 445
Q ss_pred CeeEEEECC-CCCEEEEEeCCCeEEEEECCCCccccccceeeecccEEEEEecCCCCeEEEeecCCcEEEEeCCCCceee
Q psy15995 566 PVTDCSFSP-SNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHI 644 (683)
Q Consensus 566 ~v~~~~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~~~~~ 644 (683)
.+..++|+| |+++++++ ++.|.+||+.+++...... ....+.+++|+||+++|++++.++.|++||+.+++.+.
T Consensus 256 ~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~ 330 (349)
T 1jmx_B 256 LYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN---LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK 330 (349)
T ss_dssp CEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE---CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred cceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc---CCCCccceEECCCCCEEEEecCCCeEEEEeccccceee
Confidence 688999999 99999988 8899999999988765443 33457899999999999998889999999999998887
Q ss_pred Eeec
Q psy15995 645 IIKN 648 (683)
Q Consensus 645 ~~~~ 648 (683)
.+..
T Consensus 331 ~~~~ 334 (349)
T 1jmx_B 331 NIKL 334 (349)
T ss_dssp EEEC
T ss_pred eeec
Confidence 7755
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=8.2e-21 Score=184.36 Aligned_cols=270 Identities=12% Similarity=0.094 Sum_probs=179.0
Q ss_pred CCeEEEEeC--CCCcccccccCcccceEEEEECCCCcEEEEecCC----CCEEEEeCCCc--ccccccccccCCCCcccc
Q psy15995 64 GNSVIIRNI--ENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS----GKVRIWDTVNK--EHILKNEFHPIGGPIKDI 135 (683)
Q Consensus 64 ~~~i~v~~~--~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d----g~i~iwd~~~~--~~~~~~~~~~~~~~~~~~ 135 (683)
++.|.+|.+ ++++.......|...+..++|+|||++|++++.+ +.|.+|++... +.........
T Consensus 26 ~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~-------- 97 (361)
T 3scy_A 26 SKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKT-------- 97 (361)
T ss_dssp CCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEEC--------
T ss_pred CCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEecc--------
Confidence 457888866 4565433222277888999999999999988875 78999998653 2211111110
Q ss_pred eeeeeecceeeeEeeccceEEEeec-CCccEEEEeccccceeeecc----cc--------ccCCCeeEEEEcCCCCeEEE
Q psy15995 136 GTLLSLTSIRNILVLSIGFYIASGD-ISGKVRIWDTVNKEHILKNE----FH--------PIGGPIKDIAWSPDNQRMVV 202 (683)
Q Consensus 136 ~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~----~~--------~~~~~i~~~~~s~~~~~l~~ 202 (683)
.......+++ ++++|++++ .++.|.+|++.....+.... .. .....+.+++|+|||+++++
T Consensus 98 ----~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~ 171 (361)
T 3scy_A 98 ----MGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLA 171 (361)
T ss_dssp ----SSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEE
T ss_pred ----CCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEE
Confidence 0133455666 777666655 68899999997543321111 00 11234578999999998888
Q ss_pred EecCCceEEEEEEccCCCc------e-------eeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCcee--ee
Q psy15995 203 VGEGRERFGHVFMSETGTS------V-------GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK--MT 267 (683)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~------~-------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~--~~ 267 (683)
+..... .+.+|+++.... + .....+...+..++|+|++++++++...++.|.+|++.+++.. ..
T Consensus 172 ~~~~~~-~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~ 250 (361)
T 3scy_A 172 DDLGTD-QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT 250 (361)
T ss_dssp EETTTT-EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred EeCCCC-EEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence 775443 367777765431 1 1123345668899999999974555557999999998876542 22
Q ss_pred ---ccccccCeEEEEECCCCCEEEEEcCC--CcEEEEeCC--CCe--eEEeccCCccccCeEEEEEccCCCEEEEEE-CC
Q psy15995 268 ---KQEHSRFVQAVRYSPSGSHFASAGFD--GKVFLYDGA--SAD--LVSELGNPAHKGGVYAVAWKPDGTQLLTAS-GD 337 (683)
Q Consensus 268 ---~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iw~~~--~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d 337 (683)
...+......++|+|||++|+++..+ +.|.+|++. +++ .+..+. ....+.+++|+|++++|++++ .+
T Consensus 251 ~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~---~g~~~~~~~~spdg~~l~~~~~~~ 327 (361)
T 3scy_A 251 VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL---TGIHPRNFIITPNGKYLLVACRDT 327 (361)
T ss_dssp EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE---CSSCCCEEEECTTSCEEEEEETTT
T ss_pred EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec---CCCCCceEEECCCCCEEEEEECCC
Confidence 22334557899999999988776654 889999985 444 333332 245678999999999998887 57
Q ss_pred CcEEEEEC--CCCcee
Q psy15995 338 KTCKLWDI--ETKSVV 351 (683)
Q Consensus 338 g~i~iwd~--~~~~~~ 351 (683)
+.+.+|++ .+++..
T Consensus 328 ~~v~v~~~d~~~g~~~ 343 (361)
T 3scy_A 328 NVIQIFERDQATGLLT 343 (361)
T ss_dssp TEEEEEEECTTTCCEE
T ss_pred CCEEEEEEECCCCcEe
Confidence 88999654 455543
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=1.7e-21 Score=207.82 Aligned_cols=334 Identities=10% Similarity=0.054 Sum_probs=222.2
Q ss_pred EEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeecccccc---CeEEEEECCCCCEEEEEcC---------CCcEEEEe
Q psy15995 233 NSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSR---FVQAVRYSPSGSHFASAGF---------DGKVFLYD 300 (683)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------dg~i~iw~ 300 (683)
..++|+|++. ++..+.|+.|++||..+++....+..|.. .+.+++|||||++|++++. ++.|++||
T Consensus 19 ~~~~~s~dg~--~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 19 FFPNWISGQE--YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCCEESSSSE--EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CccEECCCCe--EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 3779999995 44455799999999999988777766544 4899999999999998876 68999999
Q ss_pred CCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcc-----------------eec
Q psy15995 301 GASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQV-----------------EDQ 363 (683)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------------~~~ 363 (683)
+.+++.+.... ....+..++|+|||+.|+.+. ++.|++|++.+++.......+... ...
T Consensus 97 ~~~g~~~~~~~---l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~ 172 (719)
T 1z68_A 97 LSNGEFVRGNE---LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKY 172 (719)
T ss_dssp TTTTEECCSSC---CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred CCCCcccccee---cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcc
Confidence 99988732222 124688899999999999886 689999999888764322111111 114
Q ss_pred eEEEEecCCEEEEEecCC----------------------------------cEEEEecCCCCcc----e---eeeeecc
Q psy15995 364 QVSCLWQGDYLLTVSLSG----------------------------------FISYLDVNNPSTP----I---RVIKGHN 402 (683)
Q Consensus 364 ~~~~~~~~~~l~~~~~~g----------------------------------~i~~~~~~~~~~~----~---~~~~~~~ 402 (683)
.+.++|++++|++++.+. .+.+||+..+... + ..+.+|.
T Consensus 173 ~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 252 (719)
T 1z68_A 173 ALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD 252 (719)
T ss_dssp CEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred cEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence 788999999999987652 6788998764321 1 1133577
Q ss_pred ccEEEEEEeCCCCEEEEEeCC----CcEEEEc----CCCCCcceecc---CCCCcceeEEEEeCCeEEEEEcCCeEEEEe
Q psy15995 403 KPITALALSPDRGTVFTGSHD----GFITRWN----AKTGENDRVQG---AGHGNQINGMKATGELLYTCGIDDTIKQVD 471 (683)
Q Consensus 403 ~~v~~~~~~~~~~~l~~~~~d----g~i~~w~----~~~~~~~~~~~---~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~ 471 (683)
..+..++|+||++.+++.... ..|.+|| +.+++...... ..+...+.
T Consensus 253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~---------------------- 310 (719)
T 1z68_A 253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAG---------------------- 310 (719)
T ss_dssp EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSS----------------------
T ss_pred ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEc----------------------
Confidence 889999999998777764432 2477888 66554433221 11111000
Q ss_pred CCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEE--EcCCC--cEEE
Q psy15995 472 LSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAV--GGADS--KVHI 547 (683)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~dg--~i~i 547 (683)
......++|+|||+.++. ...+| .|.+
T Consensus 311 -------------------------------------------------~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~ 341 (719)
T 1z68_A 311 -------------------------------------------------GFFVSTPVFSYDAISYYKIFSDKDGYKHIHY 341 (719)
T ss_dssp -------------------------------------------------SSSCCCCEECTTSSCEEEEEECTTSCEEEEE
T ss_pred -------------------------------------------------cccCCccEECCCCCeEEEEEEccCCceEEEE
Confidence 000125689999986654 44555 4666
Q ss_pred EEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEeCC-----CeEEEEECCC--Ccc--cc-ccceeeecccEEEEEec
Q psy15995 548 YELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH-----RKVVLYRVPD--FEL--AH-NKEWGFHSAKVNCVAWS 617 (683)
Q Consensus 548 ~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~i~i~~~~~--~~~--~~-~~~~~~h~~~v~~~~~s 617 (683)
|++.+++.. ....+...+..+.++ +++.|+..+.+ +..++|.+.. +.. .. ...+.+|...+..+.|+
T Consensus 342 ~~~~~~~~~--~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s 418 (719)
T 1z68_A 342 IKDTVENAI--QITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFS 418 (719)
T ss_dssp ESSCSTTCE--ECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEEC
T ss_pred EECCCCceE--ecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEEC
Confidence 677665522 222345567777777 88888776655 7788888753 321 11 11111144567889999
Q ss_pred CCCCeEEEe-ecC--CcEEEEeCCCCceeeEe
Q psy15995 618 PDSALVASG-SLD--TTIIIWSLASPAKHIII 646 (683)
Q Consensus 618 ~d~~~l~~~-~~d--~~v~iw~~~~~~~~~~~ 646 (683)
||+++++.. +.+ ..+.+||+.+++....+
T Consensus 419 ~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~ 450 (719)
T 1z68_A 419 DYAKYYALVCYGPGIPISTLHDGRTDQEIKIL 450 (719)
T ss_dssp GGGSSEEEEECCBSSCEEEEECSSSCCEEEEE
T ss_pred CCCCEEEEEcCCCCCCeEEEEECCCCCEEEEe
Confidence 999888753 333 46889999887754433
No 159
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.88 E-value=7e-21 Score=187.21 Aligned_cols=264 Identities=11% Similarity=0.024 Sum_probs=177.0
Q ss_pred EEEeCCCCcccccccCcccceEE-----EEECCCCcEEEEecC-CCC--EEEEeCCCcccccccccccCCCCcccceeee
Q psy15995 68 IIRNIENPAISDIYTEHSCAVNV-----AKYSPSGFYIASGDI-SGK--VRIWDTVNKEHILKNEFHPIGGPIKDIGTLL 139 (683)
Q Consensus 68 ~v~~~~~~~~~~~~~~h~~~v~~-----~~~s~d~~~las~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (683)
..+|..++.....+..|...... .+|||||++||.++. ++. |.+||+.+++.......+.
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~------------ 80 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRG------------ 80 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSC------------
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCC------------
Confidence 34577778777888888876666 899999999998876 664 8889998887654443332
Q ss_pred eecceeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCCCeeEE--EEcCCCCeEEEEec------------
Q psy15995 140 SLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDI--AWSPDNQRMVVVGE------------ 205 (683)
Q Consensus 140 ~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~--~~s~~~~~l~~~~~------------ 205 (683)
..+..+.|+|||++|+.++.++.|++||+.+++........ ...+... .++||++.++....
T Consensus 81 --~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~--~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~ 156 (388)
T 3pe7_A 81 --DNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVP--AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWK 156 (388)
T ss_dssp --BCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC--TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHH
T ss_pred --CCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeech--hhcccccceeECCCCCeeccccccCcccccccccc
Confidence 23346789999999999999999999999998765443333 2334333 45899998876431
Q ss_pred --------CCceEEEEEEccCCCceeeeecCCcCeEEEEeec-CCCeEEEEeeC------CCeEEEEcCCCCceeeeccc
Q psy15995 206 --------GRERFGHVFMSETGTSVGEISGQSKPINSCDFKP-SRPFRIITGSE------DNTIAVFEGPPFKFKMTKQE 270 (683)
Q Consensus 206 --------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~------d~~i~iw~~~~~~~~~~~~~ 270 (683)
+....+.+++.++++ ...+..+...+..+.|+| +++. ++.... ...|.++|...++... +..
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~g~-~~~l~~~~~~~~~~~~sp~dg~~-l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~ 233 (388)
T 3pe7_A 157 KFHEFYFTKPCCRLMRVDLKTGE-STVILQENQWLGHPIYRPYDDST-VAFCHEGPHDLVDARMWLINEDGTNMRK-VKT 233 (388)
T ss_dssp HHHHHGGGCCCEEEEEEETTTCC-EEEEEEESSCEEEEEEETTEEEE-EEEEECSCTTTSSCSEEEEETTSCCCEE-SCC
T ss_pred hhhhhhccCCcceEEEEECCCCc-eEEeecCCccccccEECCCCCCE-EEEEEecCCCCCcceEEEEeCCCCceEE-eee
Confidence 222346667766765 445556777899999999 8885 555444 3378888876654433 333
Q ss_pred cc--cCeEEEEECCCCCEEEEEcC-CC----cEEEEeCCCCeeEEeccCCccccC---eEEEEEccCCCEEEEE------
Q psy15995 271 HS--RFVQAVRYSPSGSHFASAGF-DG----KVFLYDGASADLVSELGNPAHKGG---VYAVAWKPDGTQLLTA------ 334 (683)
Q Consensus 271 ~~--~~v~~~~~~~~~~~l~~~~~-dg----~i~iw~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~l~~~------ 334 (683)
+. ..+..++|+|||+.|+..+. ++ .|++||+.+++.......+.+... ...++|+|||+.|+..
T Consensus 234 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 313 (388)
T 3pe7_A 234 HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSG 313 (388)
T ss_dssp CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC---------
T ss_pred CCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccc
Confidence 33 35788999999997765443 22 399999998875433222111100 1123689999887754
Q ss_pred ---ECCCcEEEEECCCCce
Q psy15995 335 ---SGDKTCKLWDIETKSV 350 (683)
Q Consensus 335 ---~~dg~i~iwd~~~~~~ 350 (683)
..+..|.+||+.+++.
T Consensus 314 ~~~~~~~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 314 YKIENDPFLYVFNMKNGTQ 332 (388)
T ss_dssp ---CCCCEEEEEETTTTEE
T ss_pred cccCCCCEEEEEeccCCce
Confidence 3455788888887654
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=3.5e-19 Score=172.86 Aligned_cols=298 Identities=11% Similarity=0.065 Sum_probs=197.5
Q ss_pred eccceEEEee----cCCccEEEEecc--ccceeeeccccccCCCeeEEEEcCCCCeEEEEecC--CceEEEEEEccC--C
Q psy15995 150 LSIGFYIASG----DISGKVRIWDTV--NKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG--RERFGHVFMSET--G 219 (683)
Q Consensus 150 s~~~~~l~~~----~~d~~i~iwd~~--~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~--~~~~~~~~~~~~--~ 219 (683)
.+...+++.| +.++.|.+|++. +++....... +...+..++|+||+++|++++.+ ....+.+|.++. +
T Consensus 10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g 87 (361)
T 3scy_A 10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG 87 (361)
T ss_dssp GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT
T ss_pred CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC
Confidence 3444556665 346789999774 4543333333 55778889999999999999875 334467777765 3
Q ss_pred C--ceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeecc--------------ccccCeEEEEECCC
Q psy15995 220 T--SVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ--------------EHSRFVQAVRYSPS 283 (683)
Q Consensus 220 ~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~--------------~~~~~v~~~~~~~~ 283 (683)
+ .+.....+......+++ ++++++++...++.+.+|++.....+.... .+...+.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spd 165 (361)
T 3scy_A 88 TLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPD 165 (361)
T ss_dssp EEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTT
T ss_pred cEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCC
Confidence 3 33344446667777887 777655555578999999987543332211 12234588999999
Q ss_pred CCEEEEEc-CCCcEEEEeCCCCe-------eE-----EeccCCccccCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCc
Q psy15995 284 GSHFASAG-FDGKVFLYDGASAD-------LV-----SELGNPAHKGGVYAVAWKPDGTQLLTAS-GDKTCKLWDIETKS 349 (683)
Q Consensus 284 ~~~l~~~~-~dg~i~iw~~~~~~-------~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~ 349 (683)
|+++++++ .++.|.+|++.... .. ..... .....+..++|+||++++++++ .++.|.+|++.+++
T Consensus 166 g~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~ 244 (361)
T 3scy_A 166 GKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV-APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM 244 (361)
T ss_dssp SSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC-CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE
T ss_pred CCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec-CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc
Confidence 99766554 47899999877543 11 11111 2455678999999999888877 58999999998765
Q ss_pred eee--EEEecC--cceeceEEEEecCCEEEEEecC--CcEEEEecCCC-Cc--ceeeeeeccccEEEEEEeCCCCEEEEE
Q psy15995 350 VVS--EFIMGN--QVEDQQVSCLWQGDYLLTVSLS--GFISYLDVNNP-ST--PIRVIKGHNKPITALALSPDRGTVFTG 420 (683)
Q Consensus 350 ~~~--~~~~~~--~~~~~~~~~~~~~~~l~~~~~~--g~i~~~~~~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~ 420 (683)
... .+.... ......+.++|++++++++..+ +.+.+|++... .. .+..+.. ...+.+++|+|+|++|+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~ 323 (361)
T 3scy_A 245 LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVA 323 (361)
T ss_dssp EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEE
T ss_pred eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEE
Confidence 422 222111 1234578889999998777765 89999999632 22 2333333 4567899999999998888
Q ss_pred e-CCCcEEEE--cCCCCCcceeccCCCCcceeEEEE
Q psy15995 421 S-HDGFITRW--NAKTGENDRVQGAGHGNQINGMKA 453 (683)
Q Consensus 421 ~-~dg~i~~w--~~~~~~~~~~~~~~~~~~v~~~~~ 453 (683)
+ .++.|.+| |..+++........+...+.++.|
T Consensus 324 ~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~ 359 (361)
T 3scy_A 324 CRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKF 359 (361)
T ss_dssp ETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred ECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEE
Confidence 7 57889995 555666655443334455666665
No 161
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.88 E-value=2.1e-21 Score=190.96 Aligned_cols=276 Identities=9% Similarity=0.039 Sum_probs=188.9
Q ss_pred EeeCCCCCeEEEecC--C--eEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCccccccccc
Q psy15995 50 LGGDPKGKNFLYTNG--N--SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 125 (683)
Q Consensus 50 ~~~s~~~~~l~~~~~--~--~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~ 125 (683)
.+|||||++|++..+ + .|.+||+++++......+|...+..++|||||++|+.++.++.|.+||+.+++.......
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~ 120 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV 120 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence 679999999998853 4 599999999998877777777777789999999999999999999999999865544333
Q ss_pred ccCCCCcccceeeeeeccee--eeEeeccceEEEe----------------------ecCCccEEEEeccccceeeeccc
Q psy15995 126 HPIGGPIKDIGTLLSLTSIR--NILVLSIGFYIAS----------------------GDISGKVRIWDTVNKEHILKNEF 181 (683)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~i~--~~~~s~~~~~l~~----------------------~~~d~~i~iwd~~~~~~~~~~~~ 181 (683)
+. ..+. ...+++++++++. ...+..|.+||+.+++....
T Consensus 121 ~~--------------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l--- 183 (388)
T 3pe7_A 121 PA--------------EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI--- 183 (388)
T ss_dssp CT--------------TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE---
T ss_pred hh--------------hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEe---
Confidence 22 1121 2245888888873 23457899999998864322
Q ss_pred cccCCCeeEEEEcC-CCCeEEEEecCC----ceEEEEEEccCCCceeeeecCC--cCeEEEEeecCCCeEEEEeeCCC--
Q psy15995 182 HPIGGPIKDIAWSP-DNQRMVVVGEGR----ERFGHVFMSETGTSVGEISGQS--KPINSCDFKPSRPFRIITGSEDN-- 252 (683)
Q Consensus 182 ~~~~~~i~~~~~s~-~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~d~-- 252 (683)
..+...+..++|+| ||+.++.+.... ...+.+++.+.+. ...+..+. ..+....|+|+++.+++.+..++
T Consensus 184 ~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 262 (388)
T 3pe7_A 184 LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSP 262 (388)
T ss_dssp EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCC
T ss_pred ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeCCCCcccccceECCCCCEEEEEecCCCCC
Confidence 23446789999999 999998887642 2234444444433 34444444 35788999999996434443322
Q ss_pred --eEEEEcCCCCceee--eccccccC---eEEEEECCCCCEEEEE---------cCCCcEEEEeCCCCeeEEeccCCccc
Q psy15995 253 --TIAVFEGPPFKFKM--TKQEHSRF---VQAVRYSPSGSHFASA---------GFDGKVFLYDGASADLVSELGNPAHK 316 (683)
Q Consensus 253 --~i~iw~~~~~~~~~--~~~~~~~~---v~~~~~~~~~~~l~~~---------~~dg~i~iw~~~~~~~~~~~~~~~~~ 316 (683)
.|.+||+.+++... .+.++... ....+|+|||+.|+.. ..+..|++||+.+++...... +.
T Consensus 263 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~---~~ 339 (388)
T 3pe7_A 263 DRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVAR---HD 339 (388)
T ss_dssp CEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEE---CC
T ss_pred cceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEecc---cc
Confidence 39999998887433 22221110 1123799999977754 446689999999887644332 33
Q ss_pred c-----------CeEEEEEccCCCEEEEEEC-CCcEEEEECC
Q psy15995 317 G-----------GVYAVAWKPDGTQLLTASG-DKTCKLWDIE 346 (683)
Q Consensus 317 ~-----------~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 346 (683)
. .+.+++|+|||+.|+..+. +|...+|.+.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 340 TSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp CCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 3 4778899999998887664 6666666543
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.88 E-value=3.1e-20 Score=197.72 Aligned_cols=238 Identities=14% Similarity=0.138 Sum_probs=161.3
Q ss_pred ceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCC----
Q psy15995 87 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDIS---- 162 (683)
Q Consensus 87 ~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---- 162 (683)
...+++|+|||++++++ |++|++||+.+++....+..+.... .......+.|||||++|+.++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~Spdg~~l~~~~~~~~~~ 86 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDE---------FGHSINDYSISPDGQFILLEYNYVKQW 86 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTT---------CCSCCCEEEECTTSSEEEEEEEEEECS
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhh---------hcccccceEECCCCCEEEEEECCeeeE
Confidence 45688999999999997 8999999999998665554443110 00122347899999999998876
Q ss_pred -----ccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceee-eecCCcCe----
Q psy15995 163 -----GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE-ISGQSKPI---- 232 (683)
Q Consensus 163 -----~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v---- 232 (683)
+.+.+||+.+++.. .+..+.+.+...+|||||+.|+.+... .+++++..+++.... ..++...+
T Consensus 87 r~~~~~~~~~~d~~~~~~~---~l~~~~~~~~~~~~SPdG~~la~~~~~---~i~~~~~~~~~~~~lt~~g~~~~~~~g~ 160 (740)
T 4a5s_A 87 RHSYTASYDIYDLNKRQLI---TEERIPNNTQWVTWSPVGHKLAYVWNN---DIYVKIEPNLPSYRITWTGKEDIIYNGI 160 (740)
T ss_dssp SSCEEEEEEEEETTTTEEC---CSSCCCTTEEEEEECSSTTCEEEEETT---EEEEESSTTSCCEECCSCCBTTTEEESB
T ss_pred EEccceEEEEEECCCCcEE---EcccCCCcceeeEECCCCCEEEEEECC---eEEEEECCCCceEEEcCCCCccceecCc
Confidence 56779999998743 244456789999999999999998654 256666666654332 22332222
Q ss_pred -------------EEEEeecCCCeEEEEeeC-CCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEE
Q psy15995 233 -------------NSCDFKPSRPFRIITGSE-DNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL 298 (683)
Q Consensus 233 -------------~~~~~~~~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 298 (683)
..+.|+|||+. |+..+. ++.+.+|++...... ..+...+..+.+.+.|.. .....|++
T Consensus 161 ~~~v~~ee~~~~~~~~~wSpDg~~-la~~~~d~~~v~~~~~~~~~~~---~~~~~~~~~~~yp~~G~~----~~~~~l~v 232 (740)
T 4a5s_A 161 TDWVYEEEVFSAYSALWWSPNGTF-LAYAQFNDTEVPLIEYSFYSDE---SLQYPKTVRVPYPKAGAV----NPTVKFFV 232 (740)
T ss_dssp CCHHHHHHTSSSSBCEEECTTSSE-EEEEEEECTTCCEEEEEECCST---TCSSCEEEEEECCBTTSC----CCEEEEEE
T ss_pred ccccccchhcCCCcceEECCCCCE-EEEEEEcccCCceEEEEeecCC---CCCCCcceeecCCCCcCc----CCeeEEEE
Confidence 35899999997 655554 455888875321110 024456777888877753 22336899
Q ss_pred EeCCC---Ce--eEEeccCC----ccccCeEEEEEccCCCEEEEEECC----CcEEEEECCCCc
Q psy15995 299 YDGAS---AD--LVSELGNP----AHKGGVYAVAWKPDGTQLLTASGD----KTCKLWDIETKS 349 (683)
Q Consensus 299 w~~~~---~~--~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~ 349 (683)
||+.+ ++ ....+..+ .+...+..++|+||++.++..... ..|.+||+.+++
T Consensus 233 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 233 VNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp EETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred EECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 99998 73 22233221 266779999999999976665432 368899988776
No 163
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=2.9e-19 Score=176.03 Aligned_cols=272 Identities=14% Similarity=0.110 Sum_probs=184.5
Q ss_pred EecCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCc---cccee
Q psy15995 61 YTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPI---KDIGT 137 (683)
Q Consensus 61 ~~~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~ 137 (683)
+-..+.+++|+.... .+...++.+++++++.++++++.++ ++||+.......... ....... .....
T Consensus 19 F~~~~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 88 (434)
T 2oit_A 19 FRALKKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKP--GDDPNKIVDKVQGLL 88 (434)
T ss_dssp EEECCEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCT--TCCTTCEEECCCCEE
T ss_pred eeeeeeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhccc--ccCcccccccCcccc
Confidence 334467888765321 1344689999999999999999887 999886432111000 0000000 00111
Q ss_pred eeeecceeeeEeeccceEEE----eecCCccEEEEecccc--------ceee-eccccccCCCeeEEEEcCC-CCeEEEE
Q psy15995 138 LLSLTSIRNILVLSIGFYIA----SGDISGKVRIWDTVNK--------EHIL-KNEFHPIGGPIKDIAWSPD-NQRMVVV 203 (683)
Q Consensus 138 ~~~~~~i~~~~~s~~~~~l~----~~~~d~~i~iwd~~~~--------~~~~-~~~~~~~~~~i~~~~~s~~-~~~l~~~ 203 (683)
......+.+++|+|+|++|| +++.|+.|++||+.++ +.+. ...+..|...|.+++|+|+ +.+++++
T Consensus 89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~ 168 (434)
T 2oit_A 89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC 168 (434)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence 22335699999999999999 8899999999999875 1111 2334557789999999998 7788888
Q ss_pred ecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeecccc-------ccCeE
Q psy15995 204 GEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH-------SRFVQ 276 (683)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-------~~~v~ 276 (683)
+.++. +.+|+.+++.......+|...|.+++|+|++++ |++|+.||.|++||.+ ++....+..| ...|.
T Consensus 169 s~Dg~--v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~-lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~ 244 (434)
T 2oit_A 169 LADGS--IAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQ-LAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVL 244 (434)
T ss_dssp ETTSC--EEEEEESSSEEEEEEECGGGCEEEEEECTTSSC-EEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEE
T ss_pred ECCCe--EEEEEcCCCcceeeccCCCCceeEEEEcCCCCE-EEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEE
Confidence 87654 789999988777777889999999999999986 9999999999999988 5544444332 34899
Q ss_pred EEEECCCCCEEEEE-cCCC------cEEEEeCCCCe-----eEEeccCC-----ccccCeEEEEEccCCCEEEEEEC-CC
Q psy15995 277 AVRYSPSGSHFASA-GFDG------KVFLYDGASAD-----LVSELGNP-----AHKGGVYAVAWKPDGTQLLTASG-DK 338 (683)
Q Consensus 277 ~~~~~~~~~~l~~~-~~dg------~i~iw~~~~~~-----~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~-dg 338 (683)
+++|++++.++++. +.+| .+++|++...+ ....+..+ ....+-..+.+.++.+++++++. ..
T Consensus 245 ~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~ 324 (434)
T 2oit_A 245 DVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAAST 324 (434)
T ss_dssp EEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCS
T ss_pred EEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCC
Confidence 99999988776543 3343 38999987642 11222111 12233334455577777766655 44
Q ss_pred cEEEEECC
Q psy15995 339 TCKLWDIE 346 (683)
Q Consensus 339 ~i~iwd~~ 346 (683)
.|.++...
T Consensus 325 dv~vl~~~ 332 (434)
T 2oit_A 325 EVSILARQ 332 (434)
T ss_dssp BCEEEEEC
T ss_pred ceeEEEec
Confidence 57777644
No 164
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=1.2e-18 Score=171.66 Aligned_cols=205 Identities=20% Similarity=0.173 Sum_probs=156.6
Q ss_pred cceeeeEeeccceEEEeecCCccEEEEeccccce----------eee---ccccccCCCeeEEEEcCCCCeEEEE--ecC
Q psy15995 142 TSIRNILVLSIGFYIASGDISGKVRIWDTVNKEH----------ILK---NEFHPIGGPIKDIAWSPDNQRMVVV--GEG 206 (683)
Q Consensus 142 ~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~----------~~~---~~~~~~~~~i~~~~~s~~~~~l~~~--~~~ 206 (683)
..++.+++++++.++++++.++ +++|+...... +.. .....+.+.|.+++|+|++++|+++ +..
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 4578899999999999999888 89987643211 000 0011234679999999999999964 345
Q ss_pred CceEEEEEEccCC--------Cc---eeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCe
Q psy15995 207 RERFGHVFMSETG--------TS---VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFV 275 (683)
Q Consensus 207 ~~~~~~~~~~~~~--------~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v 275 (683)
.+..+.+|+.+++ +. ...+.+|...|.+++|+|++..++++++.||+|++||++++.......+|...|
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v 195 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAV 195 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCE
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCce
Confidence 5666889988754 22 455677999999999999844469999999999999999987777777889999
Q ss_pred EEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCC-----ccccCeEEEEEccCCCEEEEEE-CCCc------EEEE
Q psy15995 276 QAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP-----AHKGGVYAVAWKPDGTQLLTAS-GDKT------CKLW 343 (683)
Q Consensus 276 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~-~dg~------i~iw 343 (683)
.+++|+|+|++|++|+.||.|++||.+ ++....+..+ .|...+.+++|++++.++++.+ .+|. +++|
T Consensus 196 ~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~ 274 (434)
T 2oit_A 196 TSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMA 274 (434)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEE
T ss_pred eEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEE
Confidence 999999999999999999999999988 5555444331 1234899999999887765543 3432 8899
Q ss_pred ECCCC
Q psy15995 344 DIETK 348 (683)
Q Consensus 344 d~~~~ 348 (683)
++...
T Consensus 275 ~l~~~ 279 (434)
T 2oit_A 275 LLPKK 279 (434)
T ss_dssp ECCCT
T ss_pred EeccC
Confidence 99865
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.85 E-value=6.3e-19 Score=170.76 Aligned_cols=269 Identities=9% Similarity=0.041 Sum_probs=179.8
Q ss_pred CeEEEEeC--CCCccccc--cc-CcccceEEEEECCCCcEEEEecCCCCEEEEeCC-CcccccccccccCCCCcccceee
Q psy15995 65 NSVIIRNI--ENPAISDI--YT-EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV-NKEHILKNEFHPIGGPIKDIGTL 138 (683)
Q Consensus 65 ~~i~v~~~--~~~~~~~~--~~-~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~ 138 (683)
+.|.+|++ +++++... .. ++...+..++|+|||++|++++.+ .|.+|++. +++......... .
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~-~--------- 82 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI-G--------- 82 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC-C---------
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeec-C---------
Confidence 45776654 45554321 11 244578899999999999998887 89999997 665432221110 0
Q ss_pred eeecceeeeEeeccceE--EEeec-------------CCccEEEEeccc-cceeeecccc--ccCCCeeEEEEcCCCCeE
Q psy15995 139 LSLTSIRNILVLSIGFY--IASGD-------------ISGKVRIWDTVN-KEHILKNEFH--PIGGPIKDIAWSPDNQRM 200 (683)
Q Consensus 139 ~~~~~i~~~~~s~~~~~--l~~~~-------------~d~~i~iwd~~~-~~~~~~~~~~--~~~~~i~~~~~s~~~~~l 200 (683)
..+..++|+|||++ +++++ .++.+.+|++.. ++........ .+...+.+++|+|||+++
T Consensus 83 ---g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l 159 (365)
T 1jof_A 83 ---GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYL 159 (365)
T ss_dssp ---SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred ---CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEE
Confidence 12456889999994 55554 689999999973 5433222211 234678999999999998
Q ss_pred EEEecCCceEEEEEEcc-CCCce--eeee--cCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCC--CCceee------e
Q psy15995 201 VVVGEGRERFGHVFMSE-TGTSV--GEIS--GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP--PFKFKM------T 267 (683)
Q Consensus 201 ~~~~~~~~~~~~~~~~~-~~~~~--~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~--~~~~~~------~ 267 (683)
+++..+.+ .+.+|+.+ +++.. ..+. .|...+..++|+|++++++++...++.|.+|+.. +++... .
T Consensus 160 ~~~~~~~~-~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~ 238 (365)
T 1jof_A 160 YSADLTAN-KLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL 238 (365)
T ss_dssp EEEETTTT-EEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEES
T ss_pred EEEcCCCC-EEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEc
Confidence 87764433 47888887 66543 2333 2466799999999999744444457899999754 454321 1
Q ss_pred cc----cccc------CeEEEE-ECCCCCEEEEEcCCC------cEEEEeCC-CCeeEEecc-CCccccCeEEEEEcc--
Q psy15995 268 KQ----EHSR------FVQAVR-YSPSGSHFASAGFDG------KVFLYDGA-SADLVSELG-NPAHKGGVYAVAWKP-- 326 (683)
Q Consensus 268 ~~----~~~~------~v~~~~-~~~~~~~l~~~~~dg------~i~iw~~~-~~~~~~~~~-~~~~~~~i~~~~~~~-- 326 (683)
+. +|.. .+..++ |+|||++|++++.+. .|.+|++. +++...... .+.+...+..++|+|
T Consensus 239 ~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~ 318 (365)
T 1jof_A 239 IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCP 318 (365)
T ss_dssp SCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECT
T ss_pred CCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCC
Confidence 21 1222 588999 999999888776432 89999986 566543211 111344566889999
Q ss_pred -CCCEEEEEECC-CcEEEEECCCC
Q psy15995 327 -DGTQLLTASGD-KTCKLWDIETK 348 (683)
Q Consensus 327 -~~~~l~~~~~d-g~i~iwd~~~~ 348 (683)
|+++|++++.+ +.|.+|++...
T Consensus 319 ~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 319 WSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TCTTEEEEECSSSCEEEEEEEETT
T ss_pred cCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999998864 89999998765
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.85 E-value=4.9e-19 Score=170.14 Aligned_cols=294 Identities=12% Similarity=0.076 Sum_probs=193.7
Q ss_pred CCCCeEEEec-------CCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEec----------CCCCEEEEeCCC
Q psy15995 54 PKGKNFLYTN-------GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD----------ISGKVRIWDTVN 116 (683)
Q Consensus 54 ~~~~~l~~~~-------~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~----------~dg~i~iwd~~~ 116 (683)
++++++.... ++.|.+||.++++.+..+..+..+ .++|+|||++|+++. .++.|.+||..+
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 3556655542 569999999999988888877766 999999999998875 356799999998
Q ss_pred cccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecC--CccEEEEeccccceeee-ccccccCCCeeEEEE
Q psy15995 117 KEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDI--SGKVRIWDTVNKEHILK-NEFHPIGGPIKDIAW 193 (683)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~~i~~~~~ 193 (683)
.+.+.++...+.. .........++++|||++|+++.. +++|.+||+.+++.+.. .... ....+.+
T Consensus 91 ~~~~~~i~~~~~~--------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~----~~~~v~~ 158 (361)
T 2oiz_A 91 LTFEKEISLPPKR--------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA----GCWSVIP 158 (361)
T ss_dssp CCEEEEEEECTTB--------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT----TEEEEEE
T ss_pred CcEEEEEEcCccc--------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC----CcceeEE
Confidence 8877766543210 001134678999999999998764 68999999999876544 3322 1122445
Q ss_pred cCCC-CeEEEEecCCceEEEEEEccC-CCcee------eeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCcee
Q psy15995 194 SPDN-QRMVVVGEGRERFGHVFMSET-GTSVG------EISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK 265 (683)
Q Consensus 194 s~~~-~~l~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~ 265 (683)
.|++ ..+++.+.++. +.++..+. ++... .+..+..++ .+.+++++.. ++..+.++.+.++|....+..
T Consensus 159 ~p~~~~~~~~~~~dg~--~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~-~~~~~~~~~v~v~d~~~~~~~ 234 (361)
T 2oiz_A 159 QPNRPRSFMTICGDGG--LLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDK-AHFVSYYGNVYSADFSGDEVK 234 (361)
T ss_dssp CTTSSSEEEEEETTSS--EEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSE-EEEEBTTSEEEEEECSSSSCE
T ss_pred cCCCCeeEEEECCCCc--EEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCE-EEEEeCCCeEEEEEecCCCce
Confidence 5655 33333333332 23333332 33331 122222222 3344677764 566667899999998654321
Q ss_pred --eecc--c----c----ccCeEEEEECCCCCEEEEEcC-----------CCcEEEEeCCCCeeEEeccCCccccCeEEE
Q psy15995 266 --MTKQ--E----H----SRFVQAVRYSPSGSHFASAGF-----------DGKVFLYDGASADLVSELGNPAHKGGVYAV 322 (683)
Q Consensus 266 --~~~~--~----~----~~~v~~~~~~~~~~~l~~~~~-----------dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~ 322 (683)
..+. . + ......++++|+++.++++.. .+.|.+||+.+++.+..+.. +. +.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~--~~--p~~i 310 (361)
T 2oiz_A 235 VDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG--RD--ALSM 310 (361)
T ss_dssp EEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC--TT--CCEE
T ss_pred ecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec--CC--eeEE
Confidence 1110 0 0 111223789999888777643 34799999999999999875 44 8999
Q ss_pred EEccCCCEEEEEECCCcEEEEECCCC--ceeeEEEecCcceeceEEEEecC
Q psy15995 323 AWKPDGTQLLTASGDKTCKLWDIETK--SVVSEFIMGNQVEDQQVSCLWQG 371 (683)
Q Consensus 323 ~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 371 (683)
+|+||+++|++++. +.|.+||..++ +.+.++. ........+.+.|+|
T Consensus 311 a~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~-~~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 311 TIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIE-GAAEASLQVQFHPVG 359 (361)
T ss_dssp EEETTTTEEEEECS-SCEEEEECSSSSCEEEEEET-TSCSSEEEEEECCCS
T ss_pred EECCCCCEEEEeCC-CeEEEEECCCCcceeeEEec-cCCCCcEEEEecCCC
Confidence 99999999998887 99999999999 7776652 223344455666554
No 167
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.85 E-value=5.1e-20 Score=181.72 Aligned_cols=291 Identities=10% Similarity=-0.039 Sum_probs=186.8
Q ss_pred eEEEeeCCCCCeEEEecC----CeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccc
Q psy15995 47 PIVLGGDPKGKNFLYTNG----NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 122 (683)
Q Consensus 47 ~~~~~~s~~~~~l~~~~~----~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~ 122 (683)
+..++|||||++|++..+ ..|.+||+++++......++......+.|||||++|+.++.++.|.+||+.+++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 456789999999998743 3799999999887654444443344488999999999999888999999988765433
Q ss_pred cccccCCCCcccceeeee-------ecceeeeEeeccceEEEee-----cCCccEEEEeccccceeeeccccccCCCeeE
Q psy15995 123 NEFHPIGGPIKDIGTLLS-------LTSIRNILVLSIGFYIASG-----DISGKVRIWDTVNKEHILKNEFHPIGGPIKD 190 (683)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~ 190 (683)
...+.. ....-..+.. ........++|++++++.. ..+..|.+||+.+++..... .+...+..
T Consensus 118 ~~~~~~--~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~---~~~~~~~~ 192 (396)
T 3c5m_A 118 YTVDEE--WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH---QDTAWLGH 192 (396)
T ss_dssp EECCTT--EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE---EESSCEEE
T ss_pred Eecccc--cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec---cCCccccc
Confidence 322210 0000000000 0000114578888877665 45678999999887644322 34567899
Q ss_pred EEEcC-CCCeEEEEecCCc----eEEEEEEccCCCceeeeecC-CcCeEEEEeecCCCeEEEEeeCC-----CeEEEEcC
Q psy15995 191 IAWSP-DNQRMVVVGEGRE----RFGHVFMSETGTSVGEISGQ-SKPINSCDFKPSRPFRIITGSED-----NTIAVFEG 259 (683)
Q Consensus 191 ~~~s~-~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d-----~~i~iw~~ 259 (683)
+.|+| +++.++.+..+.. ..+.+++.+.++........ ...+..+.|+|+++. |+..+.+ +.|.+||+
T Consensus 193 ~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~-l~~~~~~~~~~~~~l~~~d~ 271 (396)
T 3c5m_A 193 PIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSA-MAYVSYFKGQTDRVIYKANP 271 (396)
T ss_dssp EEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSC-EEEEEEETTTCCEEEEEECT
T ss_pred ceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCE-EEEEecCCCCccceEEEEEC
Confidence 99999 8888887765432 23555665544433222221 335888999999996 5444332 45999999
Q ss_pred CCCceeeeccccccCeEEEEECC-CCCEEEEEc----------------CCCcEEEEeCCCCeeEEeccCCcccc-----
Q psy15995 260 PPFKFKMTKQEHSRFVQAVRYSP-SGSHFASAG----------------FDGKVFLYDGASADLVSELGNPAHKG----- 317 (683)
Q Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~----------------~dg~i~iw~~~~~~~~~~~~~~~~~~----- 317 (683)
.+++....... . ... +.|+| +|+++++++ .++.|++||+.+++...... +..
T Consensus 272 ~~g~~~~l~~~-~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~---~~~~~~~~ 345 (396)
T 3c5m_A 272 ETLENEEVMVM-P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCK---HSTSWDVL 345 (396)
T ss_dssp TTCCEEEEEEC-C-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEE---CCCCCCCB
T ss_pred CCCCeEEeeeC-C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccC---CCCccccc
Confidence 88765443221 1 133 88999 999887754 24789999998876543222 222
Q ss_pred ------CeEEEEEccCCCEEEEEEC-CCcEEEE--ECCCCc
Q psy15995 318 ------GVYAVAWKPDGTQLLTASG-DKTCKLW--DIETKS 349 (683)
Q Consensus 318 ------~i~~~~~~~~~~~l~~~~~-dg~i~iw--d~~~~~ 349 (683)
.+..++|+|+++.|+..+. ++...+| ++..+.
T Consensus 346 ~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 346 DGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp TTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred cccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence 2566789999998887765 4554454 444444
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.84 E-value=1.2e-18 Score=167.39 Aligned_cols=298 Identities=15% Similarity=0.111 Sum_probs=210.7
Q ss_pred CCCcEEEEec------CCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeec--------
Q psy15995 95 PSGFYIASGD------ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGD-------- 160 (683)
Q Consensus 95 ~d~~~las~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-------- 160 (683)
++++++.+.. .|+.|.+||..+++.+..+... ... .++|+|||++|++++
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g---------------~~p-~i~~spdg~~lyv~~~~~~~~~~ 76 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTA---------------FNG-HVQVSNDGKKIYTMTTYHERITR 76 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECC---------------EEE-EEEECTTSSEEEEEEEEETTSSS
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCC---------------CCC-ceEECCCCCEEEEEEeccccccc
Confidence 3667776543 4679999999988776554432 223 899999999998876
Q ss_pred --CCccEEEEeccccceeeeccccc----cCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceee-eecCCcCeE
Q psy15995 161 --ISGKVRIWDTVNKEHILKNEFHP----IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE-ISGQSKPIN 233 (683)
Q Consensus 161 --~d~~i~iwd~~~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~ 233 (683)
.++.|.+||..+++.+....... .......++|+|||++|+++.......+.+++.++++.+.. +.... ..
T Consensus 77 g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~--~~ 154 (361)
T 2oiz_A 77 GKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG--CW 154 (361)
T ss_dssp SCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT--EE
T ss_pred CCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC--cc
Confidence 36789999999887665544321 22457789999999999998865444578999998887766 44322 23
Q ss_pred EEEeecCCCeEEEEeeCCCeEEEEcCCC-Cceee------eccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCee
Q psy15995 234 SCDFKPSRPFRIITGSEDNTIAVFEGPP-FKFKM------TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADL 306 (683)
Q Consensus 234 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~-~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 306 (683)
.+.+.|+++..+++.+.||.+.+|+... ++... .+.....++ .+.+++++..++..+.++.+.++|+.....
T Consensus 155 ~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~ 233 (361)
T 2oiz_A 155 SVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEV 233 (361)
T ss_dssp EEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSC
T ss_pred eeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCc
Confidence 3567787755688899999999998765 44431 122222222 334467777777788899999999875532
Q ss_pred --EEeccCCc--------cccCeEEEEEccCCCEEEEEEC-----------CCcEEEEECCCCceeeEEEecCcceeceE
Q psy15995 307 --VSELGNPA--------HKGGVYAVAWKPDGTQLLTASG-----------DKTCKLWDIETKSVVSEFIMGNQVEDQQV 365 (683)
Q Consensus 307 --~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (683)
...+.... .......++|+|+++.++++.. .+.|.+||+.+++.+.++..+. ...+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~---p~~i 310 (361)
T 2oiz_A 234 KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD---ALSM 310 (361)
T ss_dssp EEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT---CCEE
T ss_pred eecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC---eeEE
Confidence 12211100 0111223789999888887653 3479999999999998887665 8889
Q ss_pred EEEecCCEEEEEecCCcEEEEecCCCC-cceeeeeeccccEEEEEEeCCCC
Q psy15995 366 SCLWQGDYLLTVSLSGFISYLDVNNPS-TPIRVIKGHNKPITALALSPDRG 415 (683)
Q Consensus 366 ~~~~~~~~l~~~~~~g~i~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~ 415 (683)
.+++++++++++.. +.|.+||..+.. +.+..+..+......++++|+|+
T Consensus 311 a~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 311 TIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999999998887 999999998841 44555555667788999999985
No 169
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.84 E-value=2.2e-19 Score=173.94 Aligned_cols=247 Identities=13% Similarity=0.037 Sum_probs=168.6
Q ss_pred CeEEEeeCCCCCeEEEecCCeEEEEeCC-CCcccccccCc-ccceEEEEECCCCcE--EEEec-------------CCCC
Q psy15995 46 QPIVLGGDPKGKNFLYTNGNSVIIRNIE-NPAISDIYTEH-SCAVNVAKYSPSGFY--IASGD-------------ISGK 108 (683)
Q Consensus 46 ~~~~~~~s~~~~~l~~~~~~~i~v~~~~-~~~~~~~~~~h-~~~v~~~~~s~d~~~--las~~-------------~dg~ 108 (683)
.+..+++||||++|++++.+.|.+|++. ++++....... .+.+.+++|+|||++ +++++ .+|.
T Consensus 41 ~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~ 120 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGY 120 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCE
T ss_pred CCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCce
Confidence 5778999999999887765599999997 77664432211 123567899999994 55664 6889
Q ss_pred EEEEeCCC-cccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeec-CCccEEEEecc-ccceeeecccc--c
Q psy15995 109 VRIWDTVN-KEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGD-ISGKVRIWDTV-NKEHILKNEFH--P 183 (683)
Q Consensus 109 i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~iwd~~-~~~~~~~~~~~--~ 183 (683)
+.+|++.. ++....+..... .....+..++|+|||++|+++. .++.|++||+. +++........ .
T Consensus 121 v~v~~~~~~g~~~~~~~~~~~----------~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~ 190 (365)
T 1jof_A 121 GNVFSVSETGKLEKNVQNYEY----------QENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD 190 (365)
T ss_dssp EEEEEECTTCCEEEEEEEEEC----------CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS
T ss_pred EEEEccCCCCcCcceEeeEEe----------CCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC
Confidence 99999974 543322221100 0114578899999999888765 46799999998 66543222222 2
Q ss_pred cCCCeeEEEEcCCCCeEEEEecCCceEEEEEEcc--CCCce------eeee----cCCc------CeEEEE-eecCCCeE
Q psy15995 184 IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE--TGTSV------GEIS----GQSK------PINSCD-FKPSRPFR 244 (683)
Q Consensus 184 ~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~--~~~~~------~~~~----~~~~------~v~~~~-~~~~~~~~ 244 (683)
+...+..++|+|||++++++..... .+.+|.++ +++.. ..+. +|.. .+..++ |+|++++
T Consensus 191 ~g~~p~~~~~spdg~~l~v~~~~~~-~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~- 268 (365)
T 1jof_A 191 PGDHPRWVAMHPTGNYLYALMEAGN-RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKY- 268 (365)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTT-EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSE-
T ss_pred CCCCCCEeEECCCCCEEEEEECCCC-eEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCE-
Confidence 3467899999999999988876433 36777665 45432 1222 1222 588999 9999997
Q ss_pred EEEeeC-CC-----eEEEEcCC-CCceee---eccccccCeEEEEECC---CCCEEEEEcCC-CcEEEEeCCCC
Q psy15995 245 IITGSE-DN-----TIAVFEGP-PFKFKM---TKQEHSRFVQAVRYSP---SGSHFASAGFD-GKVFLYDGASA 304 (683)
Q Consensus 245 l~~~~~-d~-----~i~iw~~~-~~~~~~---~~~~~~~~v~~~~~~~---~~~~l~~~~~d-g~i~iw~~~~~ 304 (683)
|++++. ++ .|.+|++. +++... ....+...+..++|+| +|++|++++.+ +.|.+|++...
T Consensus 269 l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 269 MFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 444443 33 89999986 565443 1333455567889999 89999998864 89999998765
No 170
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.83 E-value=3.8e-17 Score=164.54 Aligned_cols=326 Identities=15% Similarity=0.118 Sum_probs=236.1
Q ss_pred CCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEecc--c
Q psy15995 95 PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTV--N 172 (683)
Q Consensus 95 ~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~--~ 172 (683)
|++.++++...+++|.++|..+++.+.++... ..+..+.|+|||+++++++.++.|.+||+. +
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g---------------~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t 229 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG---------------YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE 229 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS---------------SCEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC---------------CCccceEECCCCCEEEEEcCCCeEEEEECCCCC
Confidence 45567778888999999999999887766543 345688999999999999999999999995 6
Q ss_pred cceeeeccccccCCCeeEEEEc----CCCCeEEEEecCCceEEEEEEccCCCceeeeecC----------Cc-CeEEEEe
Q psy15995 173 KEHILKNEFHPIGGPIKDIAWS----PDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ----------SK-PINSCDF 237 (683)
Q Consensus 173 ~~~~~~~~~~~~~~~i~~~~~s----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~v~~~~~ 237 (683)
++.+..... ......++|+ |||++++++...... +.+++..+.+.+..+... .. .+..+..
T Consensus 230 ~~~v~~i~~---G~~P~~ia~s~~~~pDGk~l~v~n~~~~~-v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~ 305 (567)
T 1qks_A 230 PTTVAEIKI---GSEARSIETSKMEGWEDKYAIAGAYWPPQ-YVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA 305 (567)
T ss_dssp CCEEEEEEC---CSEEEEEEECCSTTCTTTEEEEEEEETTE-EEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred CcEeEEEec---CCCCceeEEccccCCCCCEEEEEEccCCe-EEEEECCCCcEEEEEeccccccccccccCCCceEEEEE
Confidence 655443332 2456899999 699999998876544 568888888887776532 12 6788999
Q ss_pred ecCCCeEEEEeeCCCeEEEEcCCCCceeeec-cccccCeEEEEECCCCCEEEEEc-CCCcEEEEeCCCCeeEEeccC-C-
Q psy15995 238 KPSRPFRIITGSEDNTIAVFEGPPFKFKMTK-QEHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGASADLVSELGN-P- 313 (683)
Q Consensus 238 ~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~-~- 313 (683)
+++++..++....+|.|.++|..+.+..... .........+.|+|++++++++. .++.|.++|..+++.+..+.. .
T Consensus 306 s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~ 385 (567)
T 1qks_A 306 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ 385 (567)
T ss_dssp CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred cCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCc
Confidence 9998877777788899999998765432211 12344567889999999877655 578999999999988776643 1
Q ss_pred -ccccCeEEEEEccCCCEEEEEE--CCCcEEEEECCC-------CceeeEEEecCcceeceEEEEecCCEEEEEec----
Q psy15995 314 -AHKGGVYAVAWKPDGTQLLTAS--GDKTCKLWDIET-------KSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSL---- 379 (683)
Q Consensus 314 -~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 379 (683)
.|.+.-..+ ++|++..+.+.+ .++.|.++|..+ .+.++++.... .....+..+|+++++.+...
T Consensus 386 ~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g-~g~~~i~~~p~~~~l~v~~~~~~~ 463 (567)
T 1qks_A 386 TPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG-GGSLFIKTHPNSQYLYVDATLNPE 463 (567)
T ss_dssp SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC-SCCCCEECCTTCSEEEEECTTCSS
T ss_pred CCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC-CCCEEEEeCCCCCeEEEecCCCCC
Confidence 243222222 578755554433 468999999987 55666665432 33355667889999998774
Q ss_pred ---CCcEEEEecCCC-----Ccceeeee--------eccccEEEEEEeCCCCEEEEEe-----CCCcEEEEcCCCCCcce
Q psy15995 380 ---SGFISYLDVNNP-----STPIRVIK--------GHNKPITALALSPDRGTVFTGS-----HDGFITRWNAKTGENDR 438 (683)
Q Consensus 380 ---~g~i~~~~~~~~-----~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~~w~~~~~~~~~ 438 (683)
.+.|.++|+.+. ......+. .....+..+.|+|+|+.+..+. .++.|.++|..+.+...
T Consensus 464 ~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~ 543 (567)
T 1qks_A 464 AEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKH 543 (567)
T ss_dssp HHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred cccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEE
Confidence 459999999865 32223332 1235788999999999888663 37899999999988766
Q ss_pred ecc
Q psy15995 439 VQG 441 (683)
Q Consensus 439 ~~~ 441 (683)
...
T Consensus 544 ~i~ 546 (567)
T 1qks_A 544 VIK 546 (567)
T ss_dssp EEC
T ss_pred EeC
Confidence 653
No 171
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.82 E-value=5.2e-19 Score=174.51 Aligned_cols=298 Identities=10% Similarity=-0.019 Sum_probs=193.1
Q ss_pred EEEeCCCCcccccccCcccc-----eEEEEECCCCcEEEEecCC---CCEEEEeCCCcccccccccccCCCCcccceeee
Q psy15995 68 IIRNIENPAISDIYTEHSCA-----VNVAKYSPSGFYIASGDIS---GKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLL 139 (683)
Q Consensus 68 ~v~~~~~~~~~~~~~~h~~~-----v~~~~~s~d~~~las~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (683)
...|..+++.+..+..+... +.+++|||||++||..... ..|.+||+.+++.........
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~------------ 80 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKG------------ 80 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSC------------
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCC------------
Confidence 45577788776667665444 7889999999998876432 368888998876433221110
Q ss_pred eecceeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCCCeeE-------------------EEEcCCCCeE
Q psy15995 140 SLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKD-------------------IAWSPDNQRM 200 (683)
Q Consensus 140 ~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~-------------------~~~s~~~~~l 200 (683)
.....+.|+|||++|+..+.++.|.+||+.+++........ ...... ..|+|+++.+
T Consensus 81 --~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~ 156 (396)
T 3c5m_A 81 --DNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVD--EEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWE 156 (396)
T ss_dssp --BCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC--TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHH
T ss_pred --CccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecc--cccCCCCCEEEeccCCccccccccccccCCCCcce
Confidence 11233689999999999999999999999887644333222 121112 3567888776
Q ss_pred EEEec---CCceEEEEEEccCCCceeeeecCCcCeEEEEeec-CCCeEEEEeeCC------CeEEEEcCCCCceeeeccc
Q psy15995 201 VVVGE---GRERFGHVFMSETGTSVGEISGQSKPINSCDFKP-SRPFRIITGSED------NTIAVFEGPPFKFKMTKQE 270 (683)
Q Consensus 201 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~~ 270 (683)
++... .....+.+++.++++... +..+...+..+.|+| ++.. ++..+.+ ..|.+|+...++.......
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~sp~dg~~-l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~ 234 (396)
T 3c5m_A 157 KFAEFYHTNPTCRLIKVDIETGELEV-IHQDTAWLGHPIYRPFDDST-VGFCHEGPHDLVDARMWLVNEDGSNVRKIKEH 234 (396)
T ss_dssp HHHHHHHTCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEEE-EEEEECSCSSSCSCCCEEEETTSCCCEESSCC
T ss_pred eeeeeccCCCcceEEEEECCCCcEEe-eccCCcccccceECCCCCCE-EEEEecCCCCCCCceEEEEECCCCceeEeecc
Confidence 65431 333346677777766543 345677899999999 6764 4444433 4688888876654333332
Q ss_pred c-ccCeEEEEECCCCCEEEEEcCC-----CcEEEEeCCCCeeEEeccCCccccCeEEEEEcc-CCCEEEEEE--------
Q psy15995 271 H-SRFVQAVRYSPSGSHFASAGFD-----GKVFLYDGASADLVSELGNPAHKGGVYAVAWKP-DGTQLLTAS-------- 335 (683)
Q Consensus 271 ~-~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-------- 335 (683)
. ...+..++|+|+|+.|+.++.+ +.|++||+.+++.......+ ... +.|+| |+++++.++
T Consensus 235 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~----~~~-~~~s~~dg~~l~~~~~~~p~~~~ 309 (396)
T 3c5m_A 235 AEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP----PCS-HLMSNFDGSLMVGDGCDAPVDVA 309 (396)
T ss_dssp CTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC----SEE-EEEECSSSSEEEEEECCC-----
T ss_pred CCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC----CCC-CCccCCCCceEEEecCCcceeec
Confidence 1 3358889999999987776543 44999999888765443221 123 88999 999888754
Q ss_pred --------CCCcEEEEECCCCceeeEEEecCcc----------eeceEEEEecCCEEEEEec-CCcEEEEecC
Q psy15995 336 --------GDKTCKLWDIETKSVVSEFIMGNQV----------EDQQVSCLWQGDYLLTVSL-SGFISYLDVN 389 (683)
Q Consensus 336 --------~dg~i~iwd~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~-~g~i~~~~~~ 389 (683)
.+..|.+||+.+++.. .+...... ......++++++.++..+. ++...+|.+.
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 310 DADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp -----CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred cccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 2467999999887653 33222210 1344677889988877765 4555555443
No 172
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.82 E-value=5.7e-18 Score=163.49 Aligned_cols=258 Identities=15% Similarity=0.080 Sum_probs=180.5
Q ss_pred CeEEEeeCCCCCeEEEec----------CCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCC---C--CEE
Q psy15995 46 QPIVLGGDPKGKNFLYTN----------GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS---G--KVR 110 (683)
Q Consensus 46 ~~~~~~~s~~~~~l~~~~----------~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d---g--~i~ 110 (683)
.+..+++ ||+++++.. .+.|.+||+++++... + ..+..++|||||++||.++.+ + .|.
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 3455566 999999862 4579999999887543 3 578899999999999987653 2 388
Q ss_pred EEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecC---------------------------Cc
Q psy15995 111 IWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDI---------------------------SG 163 (683)
Q Consensus 111 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---------------------------d~ 163 (683)
+||+.+++....... + . +..++|+|||+.|+.++. ..
T Consensus 89 ~~~~~~g~~~~l~~~-~--------------~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 152 (347)
T 2gop_A 89 VADLETLSSKKILEA-K--------------N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKT 152 (347)
T ss_dssp EEETTTTEEEEEEEE-S--------------E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEE
T ss_pred EEECCCCceEEEEcC-C--------------C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccc
Confidence 888887654322111 1 3 788999999999988763 25
Q ss_pred cEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCc----e-EEEEEEccCCCceeeeecCCcCeEEEEee
Q psy15995 164 KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE----R-FGHVFMSETGTSVGEISGQSKPINSCDFK 238 (683)
Q Consensus 164 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 238 (683)
.|.+||+.+++.+..... . .+..++|+||| .++++..+.. . ...+|.++ ......+..+ ..+..+ +
T Consensus 153 ~l~~~d~~~~~~~~~l~~---~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~-~~~~~~--s 223 (347)
T 2gop_A 153 TFWIFDTESEEVIEEFEK---P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFEK-VSFYAV--D 223 (347)
T ss_dssp EEEEEETTTTEEEEEEEE---E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEEE-ESEEEE--E
T ss_pred eEEEEECCCCeEEeeecC---C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCceEEeccC-cceeeE--C
Confidence 799999988875222222 2 78899999999 6555543321 1 34566666 4344455545 555554 9
Q ss_pred cCCCeEEEEeeCC--------CeEEEEcCCCCceeeeccccccCeEE-EEECCCCCEEEEEcCCCcEEEEeCCCCeeEEe
Q psy15995 239 PSRPFRIITGSED--------NTIAVFEGPPFKFKMTKQEHSRFVQA-VRYSPSGSHFASAGFDGKVFLYDGASADLVSE 309 (683)
Q Consensus 239 ~~~~~~l~~~~~d--------~~i~iw~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 309 (683)
|+++. ++..+.+ ..|.+|| +++.......+...+.. +.|+ ++ .+++++.++.+++| +.+++....
T Consensus 224 pdg~~-l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~ 297 (347)
T 2gop_A 224 SDGER-ILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPI 297 (347)
T ss_dssp ECSSC-EEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEE
T ss_pred CCCCE-EEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEE
Confidence 99996 5554433 4788888 56655555666777886 9999 88 88899999999999 876665444
Q ss_pred ccCCccccCeEEEEEccCCCEEEEEECCCcE-EEEECC
Q psy15995 310 LGNPAHKGGVYAVAWKPDGTQLLTASGDKTC-KLWDIE 346 (683)
Q Consensus 310 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i-~iwd~~ 346 (683)
+. +...|.+++|+| ..+++++.++.. .+|.+.
T Consensus 298 ~~---~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 298 AK---GRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EC---SSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred ec---CCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 32 567899999999 677777776664 777766
No 173
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.81 E-value=8.9e-17 Score=161.83 Aligned_cols=318 Identities=14% Similarity=0.087 Sum_probs=220.8
Q ss_pred CCCCCeEEEe-cCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCC--CcccccccccccCC
Q psy15995 53 DPKGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV--NKEHILKNEFHPIG 129 (683)
Q Consensus 53 s~~~~~l~~~-~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~--~~~~~~~~~~~~~~ 129 (683)
+|.+.++++. .++.|.++|..+++.+.++.. ...+..++|||||+++++++.|+.|.+||+. +.+.+.++...
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G--- 239 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG--- 239 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC---
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC---
Confidence 3433344443 468999999999999887763 3356799999999999999999999999996 66555544332
Q ss_pred CCcccceeeeeecceeeeEee----ccceEEEeecC-CccEEEEeccccceeeeccccc--------c-CCCeeEEEEcC
Q psy15995 130 GPIKDIGTLLSLTSIRNILVL----SIGFYIASGDI-SGKVRIWDTVNKEHILKNEFHP--------I-GGPIKDIAWSP 195 (683)
Q Consensus 130 ~~~~~~~~~~~~~~i~~~~~s----~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~--------~-~~~i~~~~~s~ 195 (683)
.....++|+ |||+++++++. +++|.++|..+.+.+....... + ...+..+..++
T Consensus 240 ------------~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~ 307 (567)
T 1qks_A 240 ------------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH 307 (567)
T ss_dssp ------------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS
T ss_pred ------------CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcC
Confidence 446789999 69998887665 5899999999988765544322 1 12678899999
Q ss_pred CCCeEEEEecCCceEEEEEEccCCCceee-eecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccc----
Q psy15995 196 DNQRMVVVGEGRERFGHVFMSETGTSVGE-ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE---- 270 (683)
Q Consensus 196 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~---- 270 (683)
++..+++...+.. .+.+.+....+.... ..........+.|+|++++++++...++.|.++|..+++....+..
T Consensus 308 ~~~~~vv~~~~~g-~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~ 386 (567)
T 1qks_A 308 YRPEFIVNVKETG-KILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT 386 (567)
T ss_dssp SSSEEEEEETTTT-EEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS
T ss_pred CCCEEEEEecCCC-eEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcC
Confidence 8877666554433 245555544332221 1123445678899999998777777889999999999987765543
Q ss_pred -cccCeEEEEECCCCCEE-EEEc-CCCcEEEEeCCC-------CeeEEeccCCccccCeEEEEEccCCCEEEEEEC----
Q psy15995 271 -HSRFVQAVRYSPSGSHF-ASAG-FDGKVFLYDGAS-------ADLVSELGNPAHKGGVYAVAWKPDGTQLLTASG---- 336 (683)
Q Consensus 271 -~~~~v~~~~~~~~~~~l-~~~~-~dg~i~iw~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---- 336 (683)
|.+.-..+ ++|++..+ ++.. .++.|.++|..+ .+.++.+.. ....-..+..+|+++++.+...
T Consensus 387 Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~--~g~g~~~i~~~p~~~~l~v~~~~~~~ 463 (567)
T 1qks_A 387 PHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPA--LGGGSLFIKTHPNSQYLYVDATLNPE 463 (567)
T ss_dssp BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC--SCSCCCCEECCTTCSEEEEECTTCSS
T ss_pred CCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEec--CCCCCEEEEeCCCCCeEEEecCCCCC
Confidence 33212122 57875544 4443 468999999887 567777754 2233355778999999998763
Q ss_pred ---CCcEEEEECCCC-----cee-eEEEe-------cCcceeceEEEEecCCEEEEEec-----CCcEEEEecCC
Q psy15995 337 ---DKTCKLWDIETK-----SVV-SEFIM-------GNQVEDQQVSCLWQGDYLLTVSL-----SGFISYLDVNN 390 (683)
Q Consensus 337 ---dg~i~iwd~~~~-----~~~-~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~-----~g~i~~~~~~~ 390 (683)
.+.|.++|+.+. ... ..+.. ........+.+.++|+.+.++.. ++.|.++|..+
T Consensus 464 ~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t 538 (567)
T 1qks_A 464 AEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKT 538 (567)
T ss_dssp HHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred cccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCC
Confidence 358999999876 211 22211 12345677888899998887743 68999999887
No 174
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.80 E-value=6.3e-17 Score=171.52 Aligned_cols=279 Identities=11% Similarity=-0.002 Sum_probs=194.6
Q ss_pred CCCCCeEEEec--C----CeEEEEeCCCCccccc------ccCcccceEEEEECCCCcEEEEecCCC-----CEEEEeCC
Q psy15995 53 DPKGKNFLYTN--G----NSVIIRNIENPAISDI------YTEHSCAVNVAKYSPSGFYIASGDISG-----KVRIWDTV 115 (683)
Q Consensus 53 s~~~~~l~~~~--~----~~i~v~~~~~~~~~~~------~~~h~~~v~~~~~s~d~~~las~~~dg-----~i~iwd~~ 115 (683)
+|||+++++.. + +.+.+.+..+++.... -.+|...+..++|||||++||.+..++ +|++||+.
T Consensus 80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~ 159 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD 159 (710)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred EEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence 49999999873 1 2556666655543311 224666899999999999998765433 79999999
Q ss_pred CcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCcc----------------EEEEecccccee--e
Q psy15995 116 NKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGK----------------VRIWDTVNKEHI--L 177 (683)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~----------------i~iwd~~~~~~~--~ 177 (683)
+++.+...... ..+..++|+|||+.|+.++.++. |++|++.+++.. .
T Consensus 160 tg~~~~~~~~~---------------~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~ 224 (710)
T 2xdw_A 160 GAKELPDVLER---------------VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDIL 224 (710)
T ss_dssp TTEEEEEEEEE---------------ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEE
T ss_pred CCCCCcccccC---------------cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceE
Confidence 98755321111 23567899999999999887765 999999887532 2
Q ss_pred eccccccCCCeeEEEEcCCCCeEEEEecCC---ceEEEEEEccC------CC-ceeeeecCCcCeEEEEeecCCCeEEEE
Q psy15995 178 KNEFHPIGGPIKDIAWSPDNQRMVVVGEGR---ERFGHVFMSET------GT-SVGEISGQSKPINSCDFKPSRPFRIIT 247 (683)
Q Consensus 178 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~---~~~~~~~~~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~ 247 (683)
......+...+..+.|+|||++|+...... ...+.+++.++ +. ....+..+...+.. .|+|+++.+++.
T Consensus 225 v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~ 303 (710)
T 2xdw_A 225 CAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFK 303 (710)
T ss_dssp EECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEE
T ss_pred EeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEE
Confidence 222223345678999999999999887532 34466777766 43 46667777776655 488888864555
Q ss_pred eeCC---CeEEEEcCCCCce--eeecccccc--CeEEEEECCCCCEEEEEcCCCc--EEEEeCCCCeeEEeccCCccccC
Q psy15995 248 GSED---NTIAVFEGPPFKF--KMTKQEHSR--FVQAVRYSPSGSHFASAGFDGK--VFLYDGASADLVSELGNPAHKGG 318 (683)
Q Consensus 248 ~~~d---~~i~iw~~~~~~~--~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~--i~iw~~~~~~~~~~~~~~~~~~~ 318 (683)
+..+ +.|.+||+.+++. ...+..|.. .+..++|++++.++++...++. |.+|++.+++.+..+.. +.+.
T Consensus 304 s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~--~~~~ 381 (710)
T 2xdw_A 304 TNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPL--EVGS 381 (710)
T ss_dssp ECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECC--CSSE
T ss_pred ECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCC--CCce
Confidence 4433 4699999877642 233334433 6888999977778888888874 66778767877777765 5777
Q ss_pred eEEEEEccCCCEEEEEEC----CCcEEEEECCCCc
Q psy15995 319 VYAVAWKPDGTQLLTASG----DKTCKLWDIETKS 349 (683)
Q Consensus 319 i~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~ 349 (683)
+..++++|+++.++.... .+.+..||+.+++
T Consensus 382 v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 382 VVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 889999999876664422 4679999998876
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.79 E-value=1.7e-17 Score=175.24 Aligned_cols=300 Identities=11% Similarity=0.003 Sum_probs=190.2
Q ss_pred cccccCcccceEEEEECCCCcEEEEe--cCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEee--ccc
Q psy15995 78 SDIYTEHSCAVNVAKYSPSGFYIASG--DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVL--SIG 153 (683)
Q Consensus 78 ~~~~~~h~~~v~~~~~s~d~~~las~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--~~~ 153 (683)
...+.+|...|..++|++++.++++. +.++...||....+.....+..+.. .+. ...+...-....++ |||
T Consensus 16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~--~~~---~~~~~~~~~~~~~~~SPDg 90 (662)
T 3azo_A 16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPW--NVR---NRVFEYSGFPWAGVPRPAG 90 (662)
T ss_dssp HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTC--CBC---CCGGGTCCCCEEEECCSSS
T ss_pred HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCc--ccc---ccccccCCccceeeeecCC
Confidence 34577899999999999988777777 6688899999654444444433321 000 00000001134455 999
Q ss_pred eE-EEeecC-CccEEEEecc--c-cceeeeccccc---cCCCeeEEEEcCCCCeEEEEecCC------c--eEEEEEEcc
Q psy15995 154 FY-IASGDI-SGKVRIWDTV--N-KEHILKNEFHP---IGGPIKDIAWSPDNQRMVVVGEGR------E--RFGHVFMSE 217 (683)
Q Consensus 154 ~~-l~~~~~-d~~i~iwd~~--~-~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~~~------~--~~~~~~~~~ 217 (683)
++ |+..+. +..|.+|++. . ++.. ...... +...+.+++|+|||+.|++++.+. . ..+.+|+.+
T Consensus 91 ~~~la~~~~~~~~l~~~~~~~~g~~~~~-~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 169 (662)
T 3azo_A 91 GPLLVFTHFGDQRLYAFEPDAPGGAVPR-PLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLD 169 (662)
T ss_dssp SCEEEEEBTTTCCEEEECTTSTTCCCCE-ECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred CeEEEEEECCCCeEEEEcCCCCCCCCCE-eccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECC
Confidence 98 776554 5677777776 2 4322 222111 456788999999999999887642 1 235556665
Q ss_pred CC-----Cceeeee-cCCcCeEEEEeecCCCeEEEEeeCC--------CeEEEEcCC-CC---ceeeeccccccCeEEEE
Q psy15995 218 TG-----TSVGEIS-GQSKPINSCDFKPSRPFRIITGSED--------NTIAVFEGP-PF---KFKMTKQEHSRFVQAVR 279 (683)
Q Consensus 218 ~~-----~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d--------~~i~iw~~~-~~---~~~~~~~~~~~~v~~~~ 279 (683)
.+ .....+. .+...+..++|+|+|+. |+..+.+ ..|.+||+. ++ +.......|...+..++
T Consensus 170 ~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~-la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~ 248 (662)
T 3azo_A 170 GSAAADRSAVRELSDDAHRFVTGPRLSPDGRQ-AVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAE 248 (662)
T ss_dssp STTTTCGGGSEESSCSCSSEECCCEECTTSSE-EEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEE
T ss_pred CCccccCCceeEEEecCCCcccCceECCCCCE-EEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceE
Confidence 51 3344555 66678889999999996 6655543 479999998 56 44444445678899999
Q ss_pred ECCCCCEEEEEcCCC--cEEEEeCCCCeeEEeccCCccccC--------eEEEEEccCCCEEEEEECCCcEEEE--ECCC
Q psy15995 280 YSPSGSHFASAGFDG--KVFLYDGASADLVSELGNPAHKGG--------VYAVAWKPDGTQLLTASGDKTCKLW--DIET 347 (683)
Q Consensus 280 ~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~--------i~~~~~~~~~~~l~~~~~dg~i~iw--d~~~ 347 (683)
|+|||+++++++.++ .|.+||..+++....... +... +..++|+|++++++++.. +..++| |+.+
T Consensus 249 ~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~--~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~ 325 (662)
T 3azo_A 249 WAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRR--EEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPES 325 (662)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCC--SSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTT
T ss_pred ECCCCeEEEEECCCCCeEEEEEECCCCceeecccc--cccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCC
Confidence 999999888888888 677777767766544432 2211 567899999999999988 999999 5555
Q ss_pred CceeeEEEecCcceeceEEEEecCCEEEEE--ecCC--cEEEEecCC
Q psy15995 348 KSVVSEFIMGNQVEDQQVSCLWQGDYLLTV--SLSG--FISYLDVNN 390 (683)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~g--~i~~~~~~~ 390 (683)
++ +..+... ......+ .+++++.++.. +.+. .+..+|+..
T Consensus 326 ~~-~~~l~~~-~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~ 369 (662)
T 3azo_A 326 GE-LVDAAGP-WTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVT 369 (662)
T ss_dssp TE-EEECCSS-CCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTT
T ss_pred Cc-EEEecCC-CCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 54 3333222 2222222 15566654433 3333 455555544
No 176
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.79 E-value=2.5e-17 Score=173.94 Aligned_cols=289 Identities=10% Similarity=-0.008 Sum_probs=192.3
Q ss_pred CCCeEEEeeCCCCCeEEEe--c-CCeEEEEeCCCCcccccccCcccceE---------EEEEC--CCCcE-EEEecC-CC
Q psy15995 44 RGQPIVLGGDPKGKNFLYT--N-GNSVIIRNIENPAISDIYTEHSCAVN---------VAKYS--PSGFY-IASGDI-SG 107 (683)
Q Consensus 44 ~~~~~~~~~s~~~~~l~~~--~-~~~i~v~~~~~~~~~~~~~~h~~~v~---------~~~~s--~d~~~-las~~~-dg 107 (683)
...+..+++|+++-+++.. . ++...||....+.....+..|...+. ..+|+ |||++ ||.++. +.
T Consensus 23 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~ 102 (662)
T 3azo_A 23 SGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQ 102 (662)
T ss_dssp CSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTC
T ss_pred CCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCC
Confidence 3467788889876555554 2 56788888544444556777777766 66565 99998 776543 56
Q ss_pred CEEEEeCC--C-cccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCC----------ccEEEEeccc--
Q psy15995 108 KVRIWDTV--N-KEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDIS----------GKVRIWDTVN-- 172 (683)
Q Consensus 108 ~i~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----------~~i~iwd~~~-- 172 (683)
.|.+|++. + ++ ...+...+. ..+...+..++|+|||++|++++.+ ..|++||+.+
T Consensus 103 ~l~~~~~~~~g~~~-~~~l~~~~~---------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 172 (662)
T 3azo_A 103 RLYAFEPDAPGGAV-PRPLTPVSA---------VGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSA 172 (662)
T ss_dssp CEEEECTTSTTCCC-CEECSCCCC---------STTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTT
T ss_pred eEEEEcCCCCCCCC-CEeccCCcc---------CCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCc
Confidence 67777765 2 32 222222100 0011457789999999999998877 5899999988
Q ss_pred ----cceeeecccc-ccCCCeeEEEEcCCCCeEEEEecCC------ceEEEEEEcc-CC---CceeeeecCCcCeEEEEe
Q psy15995 173 ----KEHILKNEFH-PIGGPIKDIAWSPDNQRMVVVGEGR------ERFGHVFMSE-TG---TSVGEISGQSKPINSCDF 237 (683)
Q Consensus 173 ----~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~------~~~~~~~~~~-~~---~~~~~~~~~~~~v~~~~~ 237 (683)
++... +. .+...+..++|||||++|+.++.+. ...+.+++.+ ++ +......+|...+..+.|
T Consensus 173 ~~~~~~~~~---l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~ 249 (662)
T 3azo_A 173 AADRSAVRE---LSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEW 249 (662)
T ss_dssp TTCGGGSEE---SSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEE
T ss_pred cccCCceeE---EEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEE
Confidence 54322 22 3346788899999999999887553 2346777777 46 344444556789999999
Q ss_pred ecCCCeEEEEeeCCC--eEEEEcCCCCceeeeccccccC--------eEEEEECCCCCEEEEEcCCCcEEEE--eCCCCe
Q psy15995 238 KPSRPFRIITGSEDN--TIAVFEGPPFKFKMTKQEHSRF--------VQAVRYSPSGSHFASAGFDGKVFLY--DGASAD 305 (683)
Q Consensus 238 ~~~~~~~l~~~~~d~--~i~iw~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~~~~~dg~i~iw--~~~~~~ 305 (683)
+|+++ +++++..++ .|.+||..+++.......+... +..++|+|+++++++++. +.+++| |..+++
T Consensus 250 spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 250 APDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE 327 (662)
T ss_dssp CTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE
T ss_pred CCCCe-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc
Confidence 99999 588888888 6777777667655444433322 567899999999999998 999999 655565
Q ss_pred eEEeccCCccccCeEEE-EEccCCCEEEEEECCC--cEEEEECCCCce
Q psy15995 306 LVSELGNPAHKGGVYAV-AWKPDGTQLLTASGDK--TCKLWDIETKSV 350 (683)
Q Consensus 306 ~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~~dg--~i~iwd~~~~~~ 350 (683)
+..+.. +...+..+ +++++.-.+++.+.+. .+.++|+.+++.
T Consensus 328 -~~~l~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 328 -LVDAAG--PWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp -EEECCS--SCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred -EEEecC--CCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence 455543 56667766 4443322333444443 456667767654
No 177
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.78 E-value=4.5e-16 Score=147.63 Aligned_cols=281 Identities=13% Similarity=0.096 Sum_probs=195.9
Q ss_pred CCCcEEEEeCCCCeeEEeccC----CccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEE
Q psy15995 292 FDGKVFLYDGASADLVSELGN----PAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSC 367 (683)
Q Consensus 292 ~dg~i~iw~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (683)
.++.|.++|.++++....+.. .........+++. +++.+++...++.|.+||..+++.+.++.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~------------ 81 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT------------ 81 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE------------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC------------
Confidence 378999999999988765521 1122346777774 34555555567899999999988766541
Q ss_pred EecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCcceeccCCC---
Q psy15995 368 LWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGH--- 444 (683)
Q Consensus 368 ~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~--- 444 (683)
.......++++++++.+++...++.|.+||..+++.......+.
T Consensus 82 ---------------------------------~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~ 128 (328)
T 3dsm_A 82 ---------------------------------GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDM 128 (328)
T ss_dssp ---------------------------------CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCT
T ss_pred ---------------------------------CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccc
Confidence 12346778888888544444478999999999887765543322
Q ss_pred -CcceeEEEEeCCeEEEEE--cCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCC
Q psy15995 445 -GNQINGMKATGELLYTCG--IDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPID 521 (683)
Q Consensus 445 -~~~v~~~~~~~~~l~~~~--~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (683)
......+.+.++.++.+. .++.|.++|..+... ...++..
T Consensus 129 ~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~-------------------------------------~~~i~~g 171 (328)
T 3dsm_A 129 ESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKV-------------------------------------VDELTIG 171 (328)
T ss_dssp TTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEE-------------------------------------EEEEECS
T ss_pred cCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeE-------------------------------------EEEEEcC
Confidence 114455666777777776 488999999887532 2222333
Q ss_pred CCCcEEEEccCCCEEEEEcCC----------CcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEeCCCeEEEE
Q psy15995 522 YEPSSISLDHEHGLVAVGGAD----------SKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY 591 (683)
Q Consensus 522 ~~~~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~ 591 (683)
..+..++++|++++++++..+ +.|.++|..+++.......+.......++|+||+++|.++.. .|.+|
T Consensus 172 ~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~ 249 (328)
T 3dsm_A 172 IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRM 249 (328)
T ss_dssp SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEE
T ss_pred CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEE
Confidence 456788999999987777655 789999999887765554433457899999999999988765 89999
Q ss_pred ECCCCccccccceeeecccEEEEEecC-CCCeEEEe----ecCCcEEEEeCCCCceeeEeecCCCCCCeeEEEEc
Q psy15995 592 RVPDFELAHNKEWGFHSAKVNCVAWSP-DSALVASG----SLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWL 661 (683)
Q Consensus 592 ~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~~~----~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~~ 661 (683)
|..++++........+......++++| ++++.++. ..++.|.+||.. ++.+..+.. ......++|-
T Consensus 250 d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~---G~~P~~~~~~ 320 (328)
T 3dsm_A 250 PVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV---GIIPGAFCWK 320 (328)
T ss_dssp ETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE---EESEEEEEEE
T ss_pred ECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe---ccCcceEEEe
Confidence 999888743222221246788999999 55555665 578899999998 887776654 2345566654
No 178
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.78 E-value=2.2e-17 Score=174.45 Aligned_cols=281 Identities=9% Similarity=-0.059 Sum_probs=190.1
Q ss_pred eCCCCCeEEEec--C----CeEEEEeCCCCcccccc------cCcccceEEEEECCCCcEEE-----EecCCCCEEEEeC
Q psy15995 52 GDPKGKNFLYTN--G----NSVIIRNIENPAISDIY------TEHSCAVNVAKYSPSGFYIA-----SGDISGKVRIWDT 114 (683)
Q Consensus 52 ~s~~~~~l~~~~--~----~~i~v~~~~~~~~~~~~------~~h~~~v~~~~~s~d~~~la-----s~~~dg~i~iwd~ 114 (683)
.+|+|+++++.. + ..+.+.+..+++....+ .+|...+..++|||||++|| .|+.+.+|++||+
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 468999999873 2 34566665555443332 25677899999999999998 4445578999999
Q ss_pred CCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCcc-------------EEEEeccccce--eeec
Q psy15995 115 VNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGK-------------VRIWDTVNKEH--ILKN 179 (683)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~-------------i~iwd~~~~~~--~~~~ 179 (683)
.+++.+....... .....++|+|||+.|+.++.+.. |++|++.++.. ....
T Consensus 155 ~tg~~~~~~~~~~--------------~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~ 220 (695)
T 2bkl_A 155 DSGEWSKVDVIEG--------------GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH 220 (695)
T ss_dssp TTCCBCSSCCBSC--------------CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE
T ss_pred CCCCCcCCcccCc--------------ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE
Confidence 9987541111110 11257899999999999888765 99999988762 2223
Q ss_pred cccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccC-CCceeeeecCCcCeEEEEeecCCCeEEEEee---CCCeEE
Q psy15995 180 EFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSET-GTSVGEISGQSKPINSCDFKPSRPFRIITGS---EDNTIA 255 (683)
Q Consensus 180 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d~~i~ 255 (683)
....+...+..+.|+|||+++++...+......+|.++. +.....+..+...+....+ +++. +++... .++.|.
T Consensus 221 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~ 298 (695)
T 2bkl_A 221 ERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVF 298 (695)
T ss_dssp CCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEE
T ss_pred ecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEE
Confidence 333344678899999999999888765412234555443 2345556666666666666 5666 466555 368999
Q ss_pred EEcCCCCce---eeecccc-ccCeEEEEECCCCCEEEEEcCCCcEEEEeCC-CCeeEEeccCCccccCeEEEEEccCCCE
Q psy15995 256 VFEGPPFKF---KMTKQEH-SRFVQAVRYSPSGSHFASAGFDGKVFLYDGA-SADLVSELGNPAHKGGVYAVAWKPDGTQ 330 (683)
Q Consensus 256 iw~~~~~~~---~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 330 (683)
+||+.+++. ...+..+ ...+..++++ ++.++++...|+..++|.+. +++....+..+ ..+.+..++++|+++.
T Consensus 299 ~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~-~~~~v~~~~~s~d~~~ 376 (695)
T 2bkl_A 299 EVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLP-GVGAASNLMGLEDLDD 376 (695)
T ss_dssp EEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCS-SSSEECCCBSCTTCSE
T ss_pred EEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCC-CCeEEEEeecCCCCCE
Confidence 999877653 3333333 4567888888 66788888889988877554 35555555431 2566778889999887
Q ss_pred EEEEEC----CCcEEEEECCCCce
Q psy15995 331 LLTASG----DKTCKLWDIETKSV 350 (683)
Q Consensus 331 l~~~~~----dg~i~iwd~~~~~~ 350 (683)
++.... .+.+++||+.+++.
T Consensus 377 l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 377 AYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEcCCCCCCEEEEEECCCCcE
Confidence 764432 46799999988764
No 179
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.78 E-value=8.8e-12 Score=133.89 Aligned_cols=562 Identities=10% Similarity=0.065 Sum_probs=334.2
Q ss_pred CCCeEEEeeCCCCCeEEEecCCeEEEEeCCCCcccccccC--------cccceEEEEECCCCcEEEEecCCCCEEEEeCC
Q psy15995 44 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTE--------HSCAVNVAKYSPSGFYIASGDISGKVRIWDTV 115 (683)
Q Consensus 44 ~~~~~~~~~s~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~--------h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~ 115 (683)
.+.+.++.-.++|.+-+.+. +-+..||-.+- ..+.. ....|.++...++|.+.+. +.+ -+..||..
T Consensus 42 ~n~v~~I~qD~~G~lWigT~-~GL~ryDG~~f---~~~~~~~~~~~~l~~n~I~~i~~d~~g~lWig-T~~-Gl~~yd~~ 115 (795)
T 4a2l_A 42 QSTVFSIDQDKRGNMWFATY-DGVNKYDGYAF---TVYQHNEDDPNSIANDISRIVKTDSQGRVWIG-TRD-GLSRYDEE 115 (795)
T ss_dssp SSCEEEEEECTTSCEEEEET-TEEEEECSSCE---EEECCCTTCTTSCSCSCEEEEEECTTSCEEEE-ESS-CEEEEETT
T ss_pred cceeEEEEEcCCCCEEEeec-CcCcccCCCce---EEEeCCCCCCCcccccceeEEEECCCCCEEEE-eCC-chheeCCC
Confidence 46888998899986655444 45677775432 22221 2457999999999976554 444 48999987
Q ss_pred CcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCCC-eeEEEEc
Q psy15995 116 NKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGP-IKDIAWS 194 (683)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-i~~~~~s 194 (683)
+++... +...... ....|.++...++|...+... +.|..||..+++...... ...... |.++...
T Consensus 116 ~~~f~~-~~~~~~~----------~~~~i~~i~~d~~g~lwi~t~--~gl~~~~~~~~~~~~~~~-~~~~~~~i~~i~~d 181 (795)
T 4a2l_A 116 KDIFQN-FFYEKNG----------KHLQVNGIEEISPEQLLISTP--EGLIMFDIKESKFIDDSF-STAMHKTIASTLYR 181 (795)
T ss_dssp TTEEEE-ECCEETT----------EECCCCEEEEEETTEEEEEET--TEEEEEETTTTEEECSSS-CHHHHTCCEEEEEE
T ss_pred CCeEEe-ccccccC----------CCceEEEEEECCCCCEEEEEC--CceEEEECCCCEEEeccC-CCCCCcceEEEEEC
Confidence 764321 1111100 001177888888887666544 458899987654321111 000123 7888888
Q ss_pred CCCCeEEEEecCCceEEEEEEccCCCceeee-ecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccc---
Q psy15995 195 PDNQRMVVVGEGRERFGHVFMSETGTSVGEI-SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE--- 270 (683)
Q Consensus 195 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~--- 270 (683)
+++...+ +..+.. +..++.++++..... ......|.++...+++. +..++.++.+..||..+.+.......
T Consensus 182 ~~g~lwi-gt~~~G--l~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~--lwigt~~~Gl~~~~~~~~~~~~~~~~~~~ 256 (795)
T 4a2l_A 182 QGDQIYI-GTSTDG--LYTYSITQKTFEKVIPILGTKQIQAILQQSPTR--IWVATEGAGLFLINPKTKEIKNYLHSPSN 256 (795)
T ss_dssp ETTEEEE-EESSSC--EEEEETTTCCEEECC----CCCEEEEEEEETTE--EEEEEBSSCEEEEETTTTEEEEECCCTTC
T ss_pred CCCCEEE-EECCCC--EEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC--EEEEECCCCeEEEeCCCCeEEEeecCCCC
Confidence 8886555 333211 455665555433221 12356788888888875 55566555588999777654433221
Q ss_pred ----cccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCC-----ccccCeEEEEEccCCCEEEEEECCCcEE
Q psy15995 271 ----HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP-----AHKGGVYAVAWKPDGTQLLTASGDKTCK 341 (683)
Q Consensus 271 ----~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 341 (683)
....|.++...++|.+.+ |+.+ -|.+|+..+++.......+ .....|.++...++|. |..|+.++-|.
T Consensus 257 ~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~ 333 (795)
T 4a2l_A 257 PKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLN 333 (795)
T ss_dssp TTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEE
T ss_pred ccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeE
Confidence 245699999999887544 4445 5899998877654432211 1346799999998887 56677767788
Q ss_pred EEECCCCceeeEEEecC---c-ceeceEEEEec-CCEEEEEecCCcEEEEecCCCCcceeeee---------eccccEEE
Q psy15995 342 LWDIETKSVVSEFIMGN---Q-VEDQQVSCLWQ-GDYLLTVSLSGFISYLDVNNPSTPIRVIK---------GHNKPITA 407 (683)
Q Consensus 342 iwd~~~~~~~~~~~~~~---~-~~~~~~~~~~~-~~~l~~~~~~g~i~~~~~~~~~~~~~~~~---------~~~~~v~~ 407 (683)
.++..++... .+.... . ......++..+ ...+.+|+.++-+..|+.....- ..+. .....|.+
T Consensus 334 ~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~v~~ 410 (795)
T 4a2l_A 334 YYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRF--TSYTLQEDESARGIGSNNIKA 410 (795)
T ss_dssp EECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCE--EEECCC------CCSCSCEEE
T ss_pred EeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcE--EEEecCCCCcccCCCCccEEE
Confidence 9987655432 221111 1 11122233332 34577788888899998765321 1111 12357899
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEcCCCCCcceeccC---CCCcceeEEEEe-CCeEEEEEcCCeEEEEeCCCCcccCCcee
Q psy15995 408 LALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGA---GHGNQINGMKAT-GELLYTCGIDDTIKQVDLSSNAYSGPEVK 483 (683)
Q Consensus 408 ~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~---~~~~~v~~~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~~ 483 (683)
+...++++.|..|+.++-|..+|..+++....... .....|.++..+ ...|..++. +-+..++..+.........
T Consensus 411 i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~ 489 (795)
T 4a2l_A 411 VYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKE 489 (795)
T ss_dssp EEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBC
T ss_pred EEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEcccc
Confidence 99988888566677777799999887765443211 234567888777 456666666 5588888766432111000
Q ss_pred cCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCcce----
Q psy15995 484 LGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKA---- 559 (683)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---- 559 (683)
..+. . .....+.++...+++++.+... +-+..|+..++.. ...
T Consensus 490 --~~~~---------------------------~-~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~-~~~~~~~ 536 (795)
T 4a2l_A 490 --KDGT---------------------------P-VVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI-QKASILP 536 (795)
T ss_dssp --TTCC---------------------------B-CCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE-EECCCSC
T ss_pred --cccc---------------------------c-cCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE-EEecCCC
Confidence 0000 0 0123467788888887666554 4588898877654 111
Q ss_pred -eecCCcCeeEEEECCCCCEEEEEeCCCeEEEEECCCCccccccce-eeecccEEEEEecCCCCeEEEeecCCcEEEEeC
Q psy15995 560 -ELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEW-GFHSAKVNCVAWSPDSALVASGSLDTTIIIWSL 637 (683)
Q Consensus 560 -~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~ 637 (683)
..-....|.++...++|.+.++.. . -+..||..+++....... +.....|.++...++|++.+++ ++-|..|+.
T Consensus 537 ~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~ 612 (795)
T 4a2l_A 537 VSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFNP 612 (795)
T ss_dssp SCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEET
T ss_pred CCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEcC
Confidence 001345789999999998776654 3 588899887665432111 1124568899999999877665 345888998
Q ss_pred CCCceeeEeec--CCCCCCe--eEEEEccCCeEEEeeCCCcE
Q psy15995 638 ASPAKHIIIKN--AHPQSQI--TRLQWLDNDLLVSVGQDCNT 675 (683)
Q Consensus 638 ~~~~~~~~~~~--~~~~~~v--~~l~~~~~~~l~s~~~d~~v 675 (683)
.+.+.. .+.. +-....+ .++....++.|..++.+|-+
T Consensus 613 ~~~~~~-~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~Gl~ 653 (795)
T 4a2l_A 613 ETEKFR-NFTESDGLQSNQFNTASYCRTSVGQMYFGGINGIT 653 (795)
T ss_dssp TTTEEE-EECGGGTCSCSCEEEEEEEECTTSCEEEEETTEEE
T ss_pred CCCcEE-EcCCcCCCccccCccCceeECCCCeEEEecCCceE
Confidence 776543 2211 1112233 34554555567777777743
No 180
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.78 E-value=1.1e-16 Score=152.15 Aligned_cols=253 Identities=13% Similarity=0.100 Sum_probs=182.9
Q ss_pred cCCCeEEEeeCCCCCeEEEecCC-------------------------eEEEEeCCCCccccccc-CcccceEEEEECCC
Q psy15995 43 QRGQPIVLGGDPKGKNFLYTNGN-------------------------SVIIRNIENPAISDIYT-EHSCAVNVAKYSPS 96 (683)
Q Consensus 43 ~~~~~~~~~~s~~~~~l~~~~~~-------------------------~i~v~~~~~~~~~~~~~-~h~~~v~~~~~s~d 96 (683)
.-+.+..++++|+|+++++..++ .|.+||.++++.+..+. ++-.....++++|+
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 34788999999999999887554 69999999888776554 45568899999999
Q ss_pred CcEEEEecCCCCEEEEeCCCcc-cccccccccCCCCcccceeeeeecceeeeEeec-cceEEEeec-CCccEEEEecccc
Q psy15995 97 GFYIASGDISGKVRIWDTVNKE-HILKNEFHPIGGPIKDIGTLLSLTSIRNILVLS-IGFYIASGD-ISGKVRIWDTVNK 173 (683)
Q Consensus 97 ~~~las~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~-~d~~i~iwd~~~~ 173 (683)
|+++++...++.|++||..... .+..+......+. ..........++++| ++..+++.+ .++.|++||. ++
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~-----~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g 175 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGS-----DQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SG 175 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCC-----STTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TS
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCC-----CccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CC
Confidence 9988888889999999986542 3333211100000 001124578999999 788888876 6899999994 45
Q ss_pred ceeeeccccc--------cCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeee--cCCcCeEEEEeec----
Q psy15995 174 EHILKNEFHP--------IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS--GQSKPINSCDFKP---- 239 (683)
Q Consensus 174 ~~~~~~~~~~--------~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~---- 239 (683)
+.+....... .-.....++++|++..++++..... .+.+|+.++++.+..+. .+...+..++|+|
T Consensus 176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~-~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~ 254 (329)
T 3fvz_A 176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENG-RIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLF 254 (329)
T ss_dssp CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTT-EEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEE
T ss_pred CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCC-EEEEEECCCCcEEEEEeccccCCCcceeeecCCEEE
Confidence 5443332211 1134789999999666666655443 36788888888887774 4667889999999
Q ss_pred --CCCeEEEEeeCCCeEEEEcCCCCceeeec---cccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCC
Q psy15995 240 --SRPFRIITGSEDNTIAVFEGPPFKFKMTK---QEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGAS 303 (683)
Q Consensus 240 --~~~~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 303 (683)
++.. .++...+..|++|+..+++.+..+ ..+...+..++++|+|..+++...++.|++|++..
T Consensus 255 ~~~g~~-~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 255 AVNGKP-YFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEECCC-CTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EeCCCE-EeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 2221 222233558999999999988877 36677899999999998888888899999999653
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.77 E-value=6.8e-16 Score=144.12 Aligned_cols=242 Identities=14% Similarity=0.146 Sum_probs=167.5
Q ss_pred CCCeEEEeeCCCCCeEEEe-cCCeEEEEeCCCCccccccc------CcccceEEEEE-CCCCcEEEEecC-CCCEEEEeC
Q psy15995 44 RGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYT------EHSCAVNVAKY-SPSGFYIASGDI-SGKVRIWDT 114 (683)
Q Consensus 44 ~~~~~~~~~s~~~~~l~~~-~~~~i~v~~~~~~~~~~~~~------~h~~~v~~~~~-s~d~~~las~~~-dg~i~iwd~ 114 (683)
-..+..++++|+|+++++. .++.|.+||.+ ++....+. +|...+..+++ .++++++++... ++.|.+||
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d- 106 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN- 106 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-
Confidence 3568889999999987775 57899999987 44444443 35567899999 578887777643 78999999
Q ss_pred CCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEc
Q psy15995 115 VNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWS 194 (683)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s 194 (683)
.+++.+..+.... ...+..+++.++|+.+++...++.|.+||... +.+......
T Consensus 107 ~~g~~~~~~~~~~-------------~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~------------ 160 (286)
T 1q7f_A 107 QYGQFVRKFGATI-------------LQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCS------------ 160 (286)
T ss_dssp TTSCEEEEECTTT-------------CSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEECT------------
T ss_pred CCCcEEEEecCcc-------------CCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEEEeCCC------------
Confidence 5555544332211 14567899999999888888888999998643 222111100
Q ss_pred CCCCeEEEEecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeecccc--c
Q psy15995 195 PDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH--S 272 (683)
Q Consensus 195 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~--~ 272 (683)
.+...+..+++++++. ++++...++.|++|+. .++.+..+..+ .
T Consensus 161 --------------------------------~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~ 206 (286)
T 1q7f_A 161 --------------------------------KHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNY-EGQYLRQIGGEGIT 206 (286)
T ss_dssp --------------------------------TTCSSEEEEEECSSSE-EEEEEGGGTEEEEEET-TCCEEEEESCTTTS
T ss_pred --------------------------------CccCCcEEEEECCCCC-EEEEECCCCEEEEEcC-CCCEEEEEccCCcc
Confidence 1122355666666665 3556566788888886 34444444332 3
Q ss_pred cCeEEEEECCCCCEEEEEcCCC-cEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCc
Q psy15995 273 RFVQAVRYSPSGSHFASAGFDG-KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKS 349 (683)
Q Consensus 273 ~~v~~~~~~~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 349 (683)
..+..++++++|+++++...++ .|.+|+. +++.+..+........+.+++++|+++++++ +.++.|++|++....
T Consensus 207 ~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 207 NYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp CSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred CCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 6789999999999888887775 9999995 5666666643223345789999999986666 678999999986543
No 182
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.77 E-value=4.8e-16 Score=145.17 Aligned_cols=248 Identities=12% Similarity=0.119 Sum_probs=171.0
Q ss_pred ccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccC----CccccCeEEEEEc-cCCCEEEEEEC-CCcEEEE
Q psy15995 270 EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGN----PAHKGGVYAVAWK-PDGTQLLTASG-DKTCKLW 343 (683)
Q Consensus 270 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----~~~~~~i~~~~~~-~~~~~l~~~~~-dg~i~iw 343 (683)
++-..+.+++++++++++++...++.|.+||.. ++.+..+.. ..+...+..+++. ++++++++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455678999999999988888889999999976 655555532 1244578999994 66665555533 7889999
Q ss_pred ECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCC
Q psy15995 344 DIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHD 423 (683)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 423 (683)
| .+++.+..+. ..+...+.+++++|+++.+++...+
T Consensus 106 d-~~g~~~~~~~-------------------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~ 141 (286)
T 1q7f_A 106 N-QYGQFVRKFG-------------------------------------------ATILQHPRGVTVDNKGRIIVVECKV 141 (286)
T ss_dssp C-TTSCEEEEEC-------------------------------------------TTTCSCEEEEEECTTSCEEEEETTT
T ss_pred C-CCCcEEEEec-------------------------------------------CccCCCceEEEEeCCCCEEEEECCC
Confidence 9 4455433220 0123457889999999988887778
Q ss_pred CcEEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEe
Q psy15995 424 GFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTV 503 (683)
Q Consensus 424 g~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (683)
+.|.+||.. ++...... ..
T Consensus 142 ~~i~~~~~~-g~~~~~~~------------------------------~~------------------------------ 160 (286)
T 1q7f_A 142 MRVIIFDQN-GNVLHKFG------------------------------CS------------------------------ 160 (286)
T ss_dssp TEEEEECTT-SCEEEEEE------------------------------CT------------------------------
T ss_pred CEEEEEcCC-CCEEEEeC------------------------------CC------------------------------
Confidence 899999854 22211110 00
Q ss_pred ceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCcceee-cCCcCeeEEEECCCCCEEEEE
Q psy15995 504 KQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL-DHLGPVTDCSFSPSNEYLVAS 582 (683)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~ 582 (683)
.....+..++++++++++++...++.|++|+....... .... ++...+..++++++|+++++.
T Consensus 161 ---------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~-~~~~~g~~~~p~~i~~d~~G~l~v~~ 224 (286)
T 1q7f_A 161 ---------------KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLR-QIGGEGITNYPIGVGINSNGEILIAD 224 (286)
T ss_dssp ---------------TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEE-EESCTTTSCSEEEEEECTTCCEEEEE
T ss_pred ---------------CccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEE-EEccCCccCCCcEEEECCCCCEEEEe
Confidence 00123578899999998888788899999997554322 2211 123578999999999988888
Q ss_pred eCCC-eEEEEECCCCccccccceeeecccEEEEEecCCCCeEEEeecCCcEEEEeCCCCc
Q psy15995 583 DAHR-KVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPA 641 (683)
Q Consensus 583 ~~d~-~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~~ 641 (683)
..++ .|.+|+.. ++.+...........+.+++++|+|+++++ +.|+.|++|++....
T Consensus 225 ~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 225 NHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp CSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred CCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 8776 99999964 444433322112234789999999987777 679999999986643
No 183
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.77 E-value=1.8e-16 Score=151.78 Aligned_cols=274 Identities=11% Similarity=0.005 Sum_probs=188.1
Q ss_pred CeEEEeeCCCCCeEEEe-cCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccc
Q psy15995 46 QPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE 124 (683)
Q Consensus 46 ~~~~~~~s~~~~~l~~~-~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~ 124 (683)
.+..++|+|++..++.. .++.+..| .++....+.++...+.+++|+|+|++++++..++.|.+||..+++......
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~ 83 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV 83 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE
T ss_pred ccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee
Confidence 45667788888776654 56678888 344555667777788999999999988888889999999998775433221
Q ss_pred cccCCCCcccceeeeeecceeeeEeeccceEEEeecCC----ccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeE
Q psy15995 125 FHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDIS----GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRM 200 (683)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 200 (683)
.. ...+..++++++|+++++...+ +.|.+||..+++.............+.+++++|+|+.+
T Consensus 84 ~~--------------~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~ 149 (333)
T 2dg1_A 84 SH--------------KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFY 149 (333)
T ss_dssp CS--------------SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEE
T ss_pred CC--------------CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEE
Confidence 11 1568899999999988887766 68999999887643121111234578999999999876
Q ss_pred EEEecC--CceEEEEEEccCC-CceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCC-Cceeee--------c
Q psy15995 201 VVVGEG--RERFGHVFMSETG-TSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP-FKFKMT--------K 268 (683)
Q Consensus 201 ~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~-~~~~~~--------~ 268 (683)
++...+ ......++.++.. .....+..+...+..++|+|+++.++++.+.++.|.+|+..+ ++.... +
T Consensus 150 v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~ 229 (333)
T 2dg1_A 150 FTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYF 229 (333)
T ss_dssp EEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEEC
T ss_pred EEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEec
Confidence 655431 0111345555432 233333344456889999999986556666789999999863 332211 1
Q ss_pred cccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCcc----ccCeEEEEEccCCCEEEEEECCC
Q psy15995 269 QEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAH----KGGVYAVAWKPDGTQLLTASGDK 338 (683)
Q Consensus 269 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg 338 (683)
.++ ..+..++++++|+++++...++.|.+||. +++.+..+..+.. ...+.+++|+||++.|+.++.++
T Consensus 230 ~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 230 TGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp CSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 122 46788999999998777777789999997 5666666543211 12688999999988777666654
No 184
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.77 E-value=3.1e-16 Score=149.15 Aligned_cols=247 Identities=16% Similarity=0.099 Sum_probs=178.1
Q ss_pred ccceEEEEECCCCcEEEEecCC------------------------CCEEEEeCCCcccccccccccCCCCcccceeeee
Q psy15995 85 SCAVNVAKYSPSGFYIASGDIS------------------------GKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLS 140 (683)
Q Consensus 85 ~~~v~~~~~s~d~~~las~~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (683)
-+.+.+++++|+|+++++...+ ++|.+||..+++.+...... .
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-------------~ 89 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKN-------------L 89 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTT-------------T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCC-------------c
Confidence 4679999999999999888777 47999999888765433211 1
Q ss_pred ecceeeeEeeccceEEEeecCCccEEEEeccccc-eeeeccc-------cccCCCeeEEEEcC-CCCeEEEEecCCceEE
Q psy15995 141 LTSIRNILVLSIGFYIASGDISGKVRIWDTVNKE-HILKNEF-------HPIGGPIKDIAWSP-DNQRMVVVGEGRERFG 211 (683)
Q Consensus 141 ~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~-------~~~~~~i~~~~~s~-~~~~l~~~~~~~~~~~ 211 (683)
...+..++++++|+.+++...++.|++||..... .+..... ..+......++++| ++..+++-+... ..+
T Consensus 90 ~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~-~~I 168 (329)
T 3fvz_A 90 FYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCN-SRI 168 (329)
T ss_dssp CSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSC-CEE
T ss_pred cCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCC-CeE
Confidence 1457789999999999998889999999986542 2222111 12234688999999 565555443222 225
Q ss_pred EEEEccCCCceeeeecC----------CcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeecc--ccccCeEEEE
Q psy15995 212 HVFMSETGTSVGEISGQ----------SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ--EHSRFVQAVR 279 (683)
Q Consensus 212 ~~~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~--~~~~~v~~~~ 279 (683)
.+++ ..++.+..+... -.....++++|++..++++...++.|++|+..+++.+..+. .+...+..++
T Consensus 169 ~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~ 247 (329)
T 3fvz_A 169 VQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAIS 247 (329)
T ss_dssp EEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEE
T ss_pred EEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceee
Confidence 5555 456666555322 23488999999955568888889999999998888877763 4567788999
Q ss_pred ECCCCCEEEE-------EcCCCcEEEEeCCCCeeEEeccC-CccccCeEEEEEccCCCEEEEEECCCcEEEEECCC
Q psy15995 280 YSPSGSHFAS-------AGFDGKVFLYDGASADLVSELGN-PAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET 347 (683)
Q Consensus 280 ~~~~~~~l~~-------~~~dg~i~iw~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 347 (683)
++| +..+++ ...+..|++|+..+++.+..+.. ..+...+..++++|+|..+++...++.|++|++..
T Consensus 248 ~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 248 YIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred ecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 999 333333 23345899999999998888742 23667789999999998888888899999999764
No 185
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.76 E-value=1e-15 Score=145.24 Aligned_cols=272 Identities=10% Similarity=-0.011 Sum_probs=193.3
Q ss_pred CCeEEEEeCCCCccccccc------CcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCccccee
Q psy15995 64 GNSVIIRNIENPAISDIYT------EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGT 137 (683)
Q Consensus 64 ~~~i~v~~~~~~~~~~~~~------~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 137 (683)
++.|.++|.++++....+. ........+++. +++..++...++.|.+||..+++.+.++...
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~----------- 83 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGF----------- 83 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECC-----------
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCC-----------
Confidence 5799999999988765441 122446778874 4556666677889999999999877766321
Q ss_pred eeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeeccccc---cCCCeeEEEEcCCCCeEEEEecCCceEEEEE
Q psy15995 138 LLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHP---IGGPIKDIAWSPDNQRMVVVGEGRERFGHVF 214 (683)
Q Consensus 138 ~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~ 214 (683)
.....++++++++..++...++.|.+||..+++......... .......+++ ++..++++..+....+.++
T Consensus 84 ----~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~vi 157 (328)
T 3dsm_A 84 ----TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKI 157 (328)
T ss_dssp ----SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEE
T ss_pred ----CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEE
Confidence 457788999999665555578999999999987654444322 0115567777 5666666654323347888
Q ss_pred EccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCC----------CeEEEEcCCCCceeeecccc-ccCeEEEEECCC
Q psy15995 215 MSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSED----------NTIAVFEGPPFKFKMTKQEH-SRFVQAVRYSPS 283 (683)
Q Consensus 215 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------~~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~ 283 (683)
+.++++....+... .....+.++|+++. ++++..+ +.|.++|..+++....+... ......++++|+
T Consensus 158 D~~t~~~~~~i~~g-~~p~~i~~~~dG~l-~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d 235 (328)
T 3dsm_A 158 DTETDKVVDELTIG-IQPTSLVMDKYNKM-WTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGT 235 (328)
T ss_dssp ETTTTEEEEEEECS-SCBCCCEECTTSEE-EEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTT
T ss_pred ECCCCeEEEEEEcC-CCccceEEcCCCCE-EEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecC
Confidence 98888887777653 34578899999974 5555443 78999999988877665432 246899999999
Q ss_pred CCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccC-CCEEEEE----ECCCcEEEEECCCCceeeEEEecC
Q psy15995 284 GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPD-GTQLLTA----SGDKTCKLWDIETKSVVSEFIMGN 358 (683)
Q Consensus 284 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~ 358 (683)
++.|+++.. .|.+||..+++.......+........++++|+ +..+++. ..++.|.+||.. ++.+.++..+.
T Consensus 236 ~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~ 312 (328)
T 3dsm_A 236 RDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGI 312 (328)
T ss_dssp SCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEE
T ss_pred CCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEecc
Confidence 999888765 899999988876422111112467899999995 4444554 467899999998 88888876543
No 186
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.75 E-value=5.8e-12 Score=135.27 Aligned_cols=525 Identities=11% Similarity=0.045 Sum_probs=314.3
Q ss_pred CCCeEEEeeCCCCCeEEEecCCeEEEEeCCCCcccccccCcc-c---ceEEEEECCCCcEEEEecCCCCEEEEeCCCccc
Q psy15995 44 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHS-C---AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 119 (683)
Q Consensus 44 ~~~~~~~~~s~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~h~-~---~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~ 119 (683)
.+.+.++...++|.+.+.+. +.+..||..+.+... +.... . .|.++...++|++.+... + .|..||..+++.
T Consensus 87 ~n~I~~i~~d~~g~lWigT~-~Gl~~yd~~~~~f~~-~~~~~~~~~~~i~~i~~d~~g~lwi~t~-~-gl~~~~~~~~~~ 162 (795)
T 4a2l_A 87 NDISRIVKTDSQGRVWIGTR-DGLSRYDEEKDIFQN-FFYEKNGKHLQVNGIEEISPEQLLISTP-E-GLIMFDIKESKF 162 (795)
T ss_dssp CSCEEEEEECTTSCEEEEES-SCEEEEETTTTEEEE-ECCEETTEECCCCEEEEEETTEEEEEET-T-EEEEEETTTTEE
T ss_pred ccceeEEEECCCCCEEEEeC-CchheeCCCCCeEEe-ccccccCCCceEEEEEECCCCCEEEEEC-C-ceEEEECCCCEE
Confidence 46788998899998877665 458999988765433 22221 1 188999888997766543 4 599999876543
Q ss_pred ccccccccCCCCcccceeeeeecc-eeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCC
Q psy15995 120 ILKNEFHPIGGPIKDIGTLLSLTS-IRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ 198 (683)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 198 (683)
....... .... +.++...+++...+ ++.++.|..||..+++..... .......|.++...+++.
T Consensus 163 ~~~~~~~-------------~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~-~~~~~~~i~~i~~d~~g~ 227 (795)
T 4a2l_A 163 IDDSFST-------------AMHKTIASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVI-PILGTKQIQAILQQSPTR 227 (795)
T ss_dssp ECSSSCH-------------HHHTCCEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC-----CCCEEEEEEEETTE
T ss_pred EeccCCC-------------CCCcceEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEec-CCCCCCeeEEEEEcCCCC
Confidence 2111000 0123 77788888887665 454445888998776533211 112246788888888777
Q ss_pred eEEEEecCCceEEEEEEccCCCceeeeec-------CCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeecc--
Q psy15995 199 RMVVVGEGRERFGHVFMSETGTSVGEISG-------QSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ-- 269 (683)
Q Consensus 199 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~-- 269 (683)
..+....++ +..++.++++....... ....|.++...+++. +..|+.+ -+.+|+..+.+......
T Consensus 228 lwigt~~~G---l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~--lWigt~~-Gl~~~~~~~~~~~~~~~~~ 301 (795)
T 4a2l_A 228 IWVATEGAG---LFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNR--LWIGTFN-DLNIYHEGTDSFASYSSNP 301 (795)
T ss_dssp EEEEEBSSC---EEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSC--EEEEESS-CEEEEETTTTEEEEECCCT
T ss_pred EEEEECCCC---eEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCC--EEEEeCC-hhheEcCCCCeEEEEecCC
Confidence 555443322 45666555433222111 235699999998886 5555555 58889977766543321
Q ss_pred -----ccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccC----CccccCeEEEEEccCCCEEEEEECCCcE
Q psy15995 270 -----EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGN----PAHKGGVYAVAWKPDGTQLLTASGDKTC 340 (683)
Q Consensus 270 -----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i 340 (683)
-....|.++...++|. |..|+.++-|..++..++........ ......|.++...+++. |..|+.++-|
T Consensus 302 ~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl 379 (795)
T 4a2l_A 302 VENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGL 379 (795)
T ss_dssp TSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCE
T ss_pred CCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCe
Confidence 1235799999999987 45566677799998765543322111 01345699999988876 5567777779
Q ss_pred EEEECCCCceeeEEEec-------CcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeee-----eccccEEEE
Q psy15995 341 KLWDIETKSVVSEFIMG-------NQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIK-----GHNKPITAL 408 (683)
Q Consensus 341 ~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~-----~~~~~v~~~ 408 (683)
..|+..+++...-.... .......+....++..+.+|+.++.+..+|...+. ...+. .....|.++
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~--~~~~~~~~~~l~~~~v~~i 457 (795)
T 4a2l_A 380 NLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ--VENFNQRNSQLVNENVYAI 457 (795)
T ss_dssp EEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC--EEEECTTTSCCSCSCEEEE
T ss_pred EEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc--EEEeecCCCCcCCCeeEEE
Confidence 99998876543221110 11223333334455548888887889999987532 12221 134578999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEcCCCCCcceeccC-----CCCcceeEEEEe-CCeEEEEEcCCeEEEEeCCCCcccCCce
Q psy15995 409 ALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGA-----GHGNQINGMKAT-GELLYTCGIDDTIKQVDLSSNAYSGPEV 482 (683)
Q Consensus 409 ~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~-----~~~~~v~~~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~ 482 (683)
...+++...+.. . +-+..||..+++....... .....|.++..+ ...+..++. +-+..|+..+... . .
T Consensus 458 ~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~-~--~ 531 (795)
T 4a2l_A 458 LPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI-Q--K 531 (795)
T ss_dssp EECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE-E--E
T ss_pred EECCCCCEEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE-E--E
Confidence 988888766554 4 4588899877654333211 123567788777 556666666 5677887665432 0 0
Q ss_pred ecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCcceee-
Q psy15995 483 KLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL- 561 (683)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~- 561 (683)
... .. ........+.++...+++.+.+... . -+..||..+++.......
T Consensus 532 ~~~---------------------------~~-~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~~~~~~ 581 (795)
T 4a2l_A 532 ASI---------------------------LP-VSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKRYNTTN 581 (795)
T ss_dssp CCC---------------------------SC-SCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEEECGGG
T ss_pred ecC---------------------------CC-CCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEEeCCCC
Confidence 000 00 0001123567788888888665543 3 588899877654321111
Q ss_pred c-CCcCeeEEEECCCCCEEEEEeCCCeEEEEECCCCccccccceee-ecccE--EEEEecCCCCeEEEeecCCcEEEEeC
Q psy15995 562 D-HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGF-HSAKV--NCVAWSPDSALVASGSLDTTIIIWSL 637 (683)
Q Consensus 562 ~-~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~-h~~~v--~~~~~s~d~~~l~~~~~d~~v~iw~~ 637 (683)
+ ....|.++...++|++.+++ ++-+..|+..+++........+ ....+ .++...++|++++ |+.+| +..++.
T Consensus 582 gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G-l~~~~p 657 (795)
T 4a2l_A 582 GLPNNVVYGILEDSFGRLWLST--NRGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYF-GGING-ITTFRP 657 (795)
T ss_dssp TCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSCEEE-EETTE-EEEECG
T ss_pred CCchhheEEEEECCCCCEEEEc--CCceEEEcCCCCcEEEcCCcCCCccccCccCceeECCCCeEEE-ecCCc-eEEEcH
Confidence 1 24568899999999877766 3558888988766532111100 11222 5677788887555 55566 555554
No 187
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.74 E-value=3.7e-16 Score=165.66 Aligned_cols=283 Identities=7% Similarity=-0.088 Sum_probs=185.5
Q ss_pred CCCCCceeecCCCCCCc--eeeecc----cceeec---CCCcccCCCeEEEeeCCCCCeEEEec--CC----eEEEEeCC
Q psy15995 9 TQRGQPIVLGGDPKGKN--FLYTNG----NKYIFA---TLPRTQRGQPIVLGGDPKGKNFLYTN--GN----SVIIRNIE 73 (683)
Q Consensus 9 ~p~~~~~~~~~~~~~~~--~~~~~~----~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~~~--~~----~i~v~~~~ 73 (683)
+|+|+.+...-...+.. .++... ..+++. .+.......+..++|||||++||++. +| .|++||++
T Consensus 80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~ 159 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD 159 (710)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred EEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence 38998887654444332 333321 112221 12222223467789999999999873 22 89999999
Q ss_pred CCcccccccCcccceEEEEECCCCcEEEEecCCCC----------------EEEEeCCCcccccccccccCCCCccccee
Q psy15995 74 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGK----------------VRIWDTVNKEHILKNEFHPIGGPIKDIGT 137 (683)
Q Consensus 74 ~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 137 (683)
+++.+.... ....+..++|||||+.|+.++.++. |++|++.++.....+......
T Consensus 160 tg~~~~~~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~-------- 230 (710)
T 2xdw_A 160 GAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD-------- 230 (710)
T ss_dssp TTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT--------
T ss_pred CCCCCcccc-cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCC--------
Confidence 998765322 2233778999999999998887765 999999887532111111000
Q ss_pred eeeecceeeeEeeccceEEEeecC-----CccEEEEeccc------cceeeeccccccCCCeeEEEEcCCCCeEEEEecC
Q psy15995 138 LLSLTSIRNILVLSIGFYIASGDI-----SGKVRIWDTVN------KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG 206 (683)
Q Consensus 138 ~~~~~~i~~~~~s~~~~~l~~~~~-----d~~i~iwd~~~------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 206 (683)
+...+..+.|+|||++|+..+. +..|.+||+.+ +... ...+..+...+.. .|+|+|+.+++.+..
T Consensus 231 --~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~l~~~~~~~~~-~~s~dg~~l~~~s~~ 306 (710)
T 2xdw_A 231 --EPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK-WVKLIDNFEGEYD-YVTNEGTVFTFKTNR 306 (710)
T ss_dssp --CTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC-CEEEECSSSSCEE-EEEEETTEEEEEECT
T ss_pred --CCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc-eEEeeCCCCcEEE-EEeccCCEEEEEECC
Confidence 0033567899999999988764 56899999986 4211 1122223344443 589999998888764
Q ss_pred C--ceEEEEEEccCCC--ceeeeecCCc--CeEEEEeecCCCeEEEEeeCCCe--EEEEcCCCCceeeeccccccCeEEE
Q psy15995 207 R--ERFGHVFMSETGT--SVGEISGQSK--PINSCDFKPSRPFRIITGSEDNT--IAVFEGPPFKFKMTKQEHSRFVQAV 278 (683)
Q Consensus 207 ~--~~~~~~~~~~~~~--~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~d~~--i~iw~~~~~~~~~~~~~~~~~v~~~ 278 (683)
. ...+.+++.+++. ....+..|.. .+..+.|++++. ++++...++. |.+|+..+++....+..+...+..+
T Consensus 307 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~ 385 (710)
T 2xdw_A 307 HSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF-LVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGY 385 (710)
T ss_dssp TCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEE
T ss_pred CCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCE-EEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEE
Confidence 3 2335556666554 2355656544 678899986655 5888888885 5566776777777777777888999
Q ss_pred EECCCCCEEEEEc----CCCcEEEEeCCCCe
Q psy15995 279 RYSPSGSHFASAG----FDGKVFLYDGASAD 305 (683)
Q Consensus 279 ~~~~~~~~l~~~~----~dg~i~iw~~~~~~ 305 (683)
.++|+++.++... ..++++.||+.+++
T Consensus 386 ~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 386 SGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 9999998666432 24789999998876
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.72 E-value=2.3e-15 Score=141.16 Aligned_cols=249 Identities=12% Similarity=0.074 Sum_probs=177.1
Q ss_pred cccccCcccceEEEEECCCCc-EEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEE
Q psy15995 78 SDIYTEHSCAVNVAKYSPSGF-YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYI 156 (683)
Q Consensus 78 ~~~~~~h~~~v~~~~~s~d~~-~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 156 (683)
+..+..+.....+++|+|+|+ +++++..++.|..||..++ ...+.... ..+..++++++|+++
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~--------------~~~~~l~~~~dg~l~ 83 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPS--------------HHQNGHCLNKQGHLI 83 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSC--------------SSEEEEEECTTCCEE
T ss_pred EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCC--------------CCcceeeECCCCcEE
Confidence 344555666788999999998 7788888999999999876 33332221 457889999999988
Q ss_pred EeecCCccEEEEeccccceeeecccc--ccCCCeeEEEEcCCCCeEEEEecC-------------CceEEEEEEccCCCc
Q psy15995 157 ASGDISGKVRIWDTVNKEHILKNEFH--PIGGPIKDIAWSPDNQRMVVVGEG-------------RERFGHVFMSETGTS 221 (683)
Q Consensus 157 ~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~~-------------~~~~~~~~~~~~~~~ 221 (683)
++...++.|.+||..+++........ .....+..++++|+|+.+++.... ......+|.++....
T Consensus 84 v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~ 163 (296)
T 3e5z_A 84 ACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT 163 (296)
T ss_dssp EEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC
T ss_pred EEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCC
Confidence 88888899999999877643222111 112356789999999877753210 000125666655444
Q ss_pred eeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCC-CCce---eeeccccccCeEEEEECCCCCEEEEEcCCCcEE
Q psy15995 222 VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP-PFKF---KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVF 297 (683)
Q Consensus 222 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~-~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 297 (683)
...+..+......++|+|+++. +++.+.++.|.+|+.. +++. ...+..+...+..++++++|++.++. ++.|.
T Consensus 164 ~~~~~~~~~~~~gi~~s~dg~~-lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~ 240 (296)
T 3e5z_A 164 LSAPIRDRVKPNGLAFLPSGNL-LVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVH 240 (296)
T ss_dssp EEEEECCCSSEEEEEECTTSCE-EEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEE
T ss_pred EEEeecCCCCCccEEECCCCCE-EEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEE
Confidence 5556667778899999999997 4888888999999986 4443 22233355567789999999866655 78999
Q ss_pred EEeCCCCeeEEeccCCccccCeEEEEE-ccCCCEEEEEECCCcEEEEECCCCce
Q psy15995 298 LYDGASADLVSELGNPAHKGGVYAVAW-KPDGTQLLTASGDKTCKLWDIETKSV 350 (683)
Q Consensus 298 iw~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~ 350 (683)
+|+.. ++.+..+.. +.. +.+++| .|+++.|++++.++ +..++..+++.
T Consensus 241 ~~~~~-g~~~~~~~~--~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 241 VLTPD-GDELGRVLT--PQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp EECTT-SCEEEEEEC--SSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred EECCC-CCEEEEEEC--CCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence 99976 777777654 444 889999 58999899888764 55566666554
No 189
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.72 E-value=4e-15 Score=139.61 Aligned_cols=288 Identities=12% Similarity=0.016 Sum_probs=190.8
Q ss_pred EeeCCCCCeEEEec------CCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEec----------CCCCEEEEe
Q psy15995 50 LGGDPKGKNFLYTN------GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD----------ISGKVRIWD 113 (683)
Q Consensus 50 ~~~s~~~~~l~~~~------~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~----------~dg~i~iwd 113 (683)
....||++.+.... ++.|.+.|..+++.+..+.....+ . +++||||++|+++. .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 34579999988874 468999999999998888755555 4 99999999887765 357899999
Q ss_pred CCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecC--CccEEEEeccccceeeeccccccC-----C
Q psy15995 114 TVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDI--SGKVRIWDTVNKEHILKNEFHPIG-----G 186 (683)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~-----~ 186 (683)
..+.+.+.++...... .. ........++|+|||++|.++.. ++.|.++|+.+++.+......... +
T Consensus 116 ~~t~~v~~~I~v~~g~-r~------~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g 188 (386)
T 3sjl_D 116 PVTLLPTADIELPDAP-RF------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTA 188 (386)
T ss_dssp TTTCCEEEEEEETTCC-CC------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEE
T ss_pred CCCCeEEEEEECCCcc-cc------ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCC
Confidence 9999888776543200 00 00124567899999999888763 689999999999877665543210 0
Q ss_pred CeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeecCCcCeE-EEEee-cCCCeEEEEeeCCCeEEEEcCCCCce
Q psy15995 187 PIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPIN-SCDFK-PSRPFRIITGSEDNTIAVFEGPPFKF 264 (683)
Q Consensus 187 ~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~-~~~~~~l~~~~~d~~i~iw~~~~~~~ 264 (683)
.-.-++.++||+++.+......... ...+ ..+.....++. ...|. ++++ ++..+.+|.+.+.|..+...
T Consensus 189 ~~~~~~~~~DG~~~~v~~~~~g~v~---~~~~----~~~~~~~~~~~~~~~~~~~dG~--~~~vs~~g~V~v~d~~~~~~ 259 (386)
T 3sjl_D 189 PDTFFMHCRDGSLAKVAFGTEGTPE---ITHT----EVFHPEDEFLINHPAYSQKAGR--LVWPTYTGKIHQIDLSSGDA 259 (386)
T ss_dssp TTEEEEEETTSCEEEEECCSSSCCE---EEEC----CCCSCTTSCBCSCCEEETTTTE--EEEEBTTSEEEEEECTTSSC
T ss_pred CceeEEECCCCCEEEEECCCCCeEE---Eeec----ceeccccccccccceeEcCCCc--EEEEeCCCEEEEEECCCCcc
Confidence 0011255556655554443311111 0000 01111112222 23564 5664 44466689999999866542
Q ss_pred --eeecc----------ccccCeEEEEECCCCCEEEEEcC----------CCcEEEEeCCCCeeEEeccCCccccCeEEE
Q psy15995 265 --KMTKQ----------EHSRFVQAVRYSPSGSHFASAGF----------DGKVFLYDGASADLVSELGNPAHKGGVYAV 322 (683)
Q Consensus 265 --~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~ 322 (683)
...+. ........++++++++.++.... .+.|.+.|+.+++.+..+.. ...+..+
T Consensus 260 ~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v---g~~~~~l 336 (386)
T 3sjl_D 260 KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM---GHEIDSI 336 (386)
T ss_dssp EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEE
T ss_pred eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC---CCCcceE
Confidence 22221 01233445788999998877643 25799999999999999873 3478899
Q ss_pred EEccCCC-EEEEEE-CCCcEEEEECCCCceeeEEEecC
Q psy15995 323 AWKPDGT-QLLTAS-GDKTCKLWDIETKSVVSEFIMGN 358 (683)
Q Consensus 323 ~~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~ 358 (683)
++++|++ +|++.. .++.|.++|..+++.+.++....
T Consensus 337 avs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~ 374 (386)
T 3sjl_D 337 NVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG 374 (386)
T ss_dssp EECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCC
T ss_pred EECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCC
Confidence 9999997 676654 48899999999999988876554
No 190
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.71 E-value=3e-14 Score=136.53 Aligned_cols=281 Identities=11% Similarity=-0.050 Sum_probs=185.1
Q ss_pred eCCCCCeEEEecC--C----eEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEec----------CCCCEEEEeCC
Q psy15995 52 GDPKGKNFLYTNG--N----SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD----------ISGKVRIWDTV 115 (683)
Q Consensus 52 ~s~~~~~l~~~~~--~----~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~----------~dg~i~iwd~~ 115 (683)
..|+++++..... . .|.++|..+++.+..+.....+ .+++||||++|+.+. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 4577776555532 2 8899999999988777755444 999999999998875 36789999999
Q ss_pred CcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecC--CccEEEEeccccceeee-ccccccCCCeeEEE
Q psy15995 116 NKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDI--SGKVRIWDTVNKEHILK-NEFHPIGGPIKDIA 192 (683)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~~i~~~~ 192 (683)
+.+.+.++....... .........++++|||++|+++.. ++.|.++| .+++.+.. .... + ++.
T Consensus 106 t~~~~~~i~~~~~~~-------~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~---~---~~~ 171 (373)
T 2mad_H 106 TFLPIADIELPDAPR-------FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP---T---CYH 171 (373)
T ss_pred CCcEEEEEECCCccc-------cccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC---c---eEE
Confidence 887766654321000 000023457899999999998864 57899999 98876544 3332 1 244
Q ss_pred EcCCCCeEEEEecCCceEEEEEEccCCCceeeee-----cCCcC-eEEEEeecCCCeEEEEeeCCCeEEEEcCCCCce--
Q psy15995 193 WSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS-----GQSKP-INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF-- 264 (683)
Q Consensus 193 ~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~-- 264 (683)
+.|++...++....... ..+++. +++...... ....+ .....+.+++.. ++..+..+.+.+.|......
T Consensus 172 ~~~~~~~~~~~~~~dg~-~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~v~vid~~~~~~~v 248 (373)
T 2mad_H 172 IHPGAPSTFYLLCAQGG-LAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATN 248 (373)
T ss_pred EEeCCCceEEEEcCCCC-EEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCE-EEEEcCCceEEEEeccCCcceE
Confidence 55655443333222222 344555 555442221 11122 233556776664 34344678899999865432
Q ss_pred eeeccc----------cccCeEEEEECCCCCEEEEEcC----------CCcEEEEeCCCCeeEEeccCCccccCeEEEEE
Q psy15995 265 KMTKQE----------HSRFVQAVRYSPSGSHFASAGF----------DGKVFLYDGASADLVSELGNPAHKGGVYAVAW 324 (683)
Q Consensus 265 ~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~ 324 (683)
...+.. .......++++|+++.++++.. .+.|.++|..+++.+..+.. .....+++|
T Consensus 249 ~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~---g~~p~~i~~ 325 (373)
T 2mad_H 249 KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL---GHDVDAISV 325 (373)
T ss_pred eeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC---CCCcCeEEE
Confidence 122110 1223445789999998777643 35799999999999988863 346899999
Q ss_pred ccCCC-EEEEEE-CCCcEEEEECCCCceeeEE
Q psy15995 325 KPDGT-QLLTAS-GDKTCKLWDIETKSVVSEF 354 (683)
Q Consensus 325 ~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~ 354 (683)
+||++ +++++. .++.|.++|+.+++.+..+
T Consensus 326 s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 326 AQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 99999 777776 4899999999999988773
No 191
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.71 E-value=9.6e-14 Score=130.67 Aligned_cols=284 Identities=10% Similarity=0.041 Sum_probs=191.7
Q ss_pred ccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCc
Q psy15995 270 EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKS 349 (683)
Q Consensus 270 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 349 (683)
.+...+.++++.++|+.+++...++.|..||.. ++... +..+.....+.++++.++++.+++...++.|..|+.. ++
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 88 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITE-YPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI 88 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE-ecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc
Confidence 345679999999999977777667899999987 55433 2222245679999999999877776667889999986 33
Q ss_pred eeeEEEec-CcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEE
Q psy15995 350 VVSEFIMG-NQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITR 428 (683)
Q Consensus 350 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 428 (683)
...+... .......+.+.+++...++...++.+..+|. .+.........+...+..+++.++++..++...++.|..
T Consensus 89 -~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 166 (299)
T 2z2n_A 89 -IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGR 166 (299)
T ss_dssp -EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred -EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEE
Confidence 2333322 2334556666677777777767889999998 322221122234456899999999988877777788999
Q ss_pred EcCCCCCcceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEE
Q psy15995 429 WNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISI 508 (683)
Q Consensus 429 w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (683)
||. +++........
T Consensus 167 ~~~-~g~~~~~~~~~----------------------------------------------------------------- 180 (299)
T 2z2n_A 167 ITE-SGDITEFKIPT----------------------------------------------------------------- 180 (299)
T ss_dssp ECT-TCCEEEEECSS-----------------------------------------------------------------
T ss_pred EcC-CCcEEEeeCCC-----------------------------------------------------------------
Confidence 987 44332211000
Q ss_pred EeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEeCCCeE
Q psy15995 509 VENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKV 588 (683)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 588 (683)
....+..+++++++++.++...++.|.+|+. ++.............+.+++++++|+++++...++.|
T Consensus 181 -----------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 248 (299)
T 2z2n_A 181 -----------PASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKI 248 (299)
T ss_dssp -----------TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEE
T ss_pred -----------CCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceE
Confidence 0113467888888887777767788999998 5543321111245678999999999977776678899
Q ss_pred EEEECCCCccccccceeeecccEEEEEecCCCCeEEEeecCCcEEEEeCCCC
Q psy15995 589 VLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASP 640 (683)
Q Consensus 589 ~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~ 640 (683)
..||. +++... .....+...+.++++ +++++.++.. .+.+..++.++.
T Consensus 249 ~~~d~-~g~~~~-~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 249 GRLTS-NNIIEE-YPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp EEEET-TTEEEE-EECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred EEECC-CCceEE-EeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 99998 454322 111124467899999 8888777665 566777776654
No 192
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.71 E-value=2.1e-14 Score=134.67 Aligned_cols=304 Identities=13% Similarity=0.045 Sum_probs=202.7
Q ss_pred EEECCCCCEEEEEcC-----CCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEE----------CCCcEEE
Q psy15995 278 VRYSPSGSHFASAGF-----DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS----------GDKTCKL 342 (683)
Q Consensus 278 ~~~~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~i 342 (683)
....|+++.+++... ++.|.++|..+++.+..+.. ...+ .++++||+++++++. .++.|.+
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v--G~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~Vsv 113 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG--GFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEV 113 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE--CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEEC--CCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEE
Confidence 455789998888765 57999999999999988864 3334 499999999998876 3578999
Q ss_pred EECCCCceeeEEEecC------cceeceEEEEecCCEEEEEec--CCcEEEEecCCCCcceeeeeeccccEEEEEEeCCC
Q psy15995 343 WDIETKSVVSEFIMGN------QVEDQQVSCLWQGDYLLTVSL--SGFISYLDVNNPSTPIRVIKGHNKPITALALSPDR 414 (683)
Q Consensus 343 wd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~--~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 414 (683)
||..+++.+.++.... ......+.+++++++++++.. ++.+.++|.... +.+..+.... . ...+....
T Consensus 114 iD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~-~vv~tI~v~g--~-~~~~P~g~ 189 (386)
T 3sjl_D 114 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK-AFKRMLDVPD--C-YHIFPTAP 189 (386)
T ss_dssp ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT-EEEEEEECCS--E-EEEEEEET
T ss_pred EECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC-cEEEEEECCC--c-ceeecCCC
Confidence 9999999999887653 235678899999999998874 689999999884 4444443211 1 12233344
Q ss_pred CEEEEEeCCCcEEEEcCCC-CCcceecc---CCCCccee-EEEEe--CCeEEEEEcCCeEEEEeCCCCcccCC-ceecCC
Q psy15995 415 GTVFTGSHDGFITRWNAKT-GENDRVQG---AGHGNQIN-GMKAT--GELLYTCGIDDTIKQVDLSSNAYSGP-EVKLGS 486 (683)
Q Consensus 415 ~~l~~~~~dg~i~~w~~~~-~~~~~~~~---~~~~~~v~-~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~-~~~~~~ 486 (683)
+.+++.+.||.+.+.++.+ ++...... ......+. ...+. ...++..+.++.+.+.|+.+...... ...+..
T Consensus 190 ~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~ 269 (386)
T 3sjl_D 190 DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT 269 (386)
T ss_dssp TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSC
T ss_pred ceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccc
Confidence 5666777788888888765 44321110 01111221 12332 34454566789999999876532110 000000
Q ss_pred CCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcC----------CCcEEEEEcCCCccC
Q psy15995 487 QPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGA----------DSKVHIYELNNKSLS 556 (683)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~ 556 (683)
.. ....--.......++++++++.+++... .+.|.++|+.+.+.+
T Consensus 270 -~~------------------------~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~ 324 (386)
T 3sjl_D 270 -EA------------------------ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL 324 (386)
T ss_dssp -HH------------------------HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred -cc------------------------cccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE
Confidence 00 0000000123445788999998888643 256999999999988
Q ss_pred cceeecCCcCeeEEEECCCCC-EEEEEe-CCCeEEEEECCCCccccccceeeecccEEEEEecCC
Q psy15995 557 PKAELDHLGPVTDCSFSPSNE-YLVASD-AHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPD 619 (683)
Q Consensus 557 ~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d 619 (683)
.....+ ..+..+++++|++ +|+++. .++.|.++|..+++.+...... +..+.|.+++|
T Consensus 325 ~~i~vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~---~~p~~l~~s~d 384 (386)
T 3sjl_D 325 AKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL---GHGPQVITTAD 384 (386)
T ss_dssp EEEEEE--EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC---CSSCCEEEECC
T ss_pred EEEECC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC---CCCceeEECCc
Confidence 777655 4688999999997 666654 5899999999999988776654 33455677776
No 193
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.70 E-value=1.7e-13 Score=129.03 Aligned_cols=279 Identities=10% Similarity=-0.018 Sum_probs=190.5
Q ss_pred CCeEEEeeCCCCCeEEEec-CCeEEEEeCCCCccccc-ccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccc
Q psy15995 45 GQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDI-YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 122 (683)
Q Consensus 45 ~~~~~~~~s~~~~~l~~~~-~~~i~v~~~~~~~~~~~-~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~ 122 (683)
..+..++++|+|+++++.. ++.|.+||.. ++.... +..+...+.+++++++|+++++...++.|..||.. ++ ...
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~ 91 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI-IKE 91 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEE
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc-EEE
Confidence 5788999999999888775 6899999988 554332 23356789999999999988887778889999976 32 112
Q ss_pred cccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEE
Q psy15995 123 NEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVV 202 (683)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 202 (683)
+.... ....+..+++.++|..+++...++.|..||. +++.. ..........+..+++.++++..++
T Consensus 92 ~~~~~------------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~ 157 (299)
T 2z2n_A 92 YTLPN------------PDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR-EYELPNKGSYPSFITLGSDNALWFT 157 (299)
T ss_dssp EECSS------------TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECTTSCEEEE
T ss_pred EeCCC------------cCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-EecCCCCCCCCceEEEcCCCCEEEE
Confidence 21110 1145778999999988888877889999998 54432 2222223457899999999976554
Q ss_pred EecCCceEEEEEEccCCCceee-eecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeee-ccccccCeEEEEE
Q psy15995 203 VGEGRERFGHVFMSETGTSVGE-ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT-KQEHSRFVQAVRY 280 (683)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~-~~~~~~~v~~~~~ 280 (683)
..... .+..++. +++.... +..+...+..+++.+++.. .++...++.|.+|+. +++.... ...+...+.++++
T Consensus 158 ~~~~~--~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l-~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~ 232 (299)
T 2z2n_A 158 ENQNN--AIGRITE-SGDITEFKIPTPASGPVGITKGNDDAL-WFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITA 232 (299)
T ss_dssp ETTTT--EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSE-EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred eCCCC--EEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCE-EEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEE
Confidence 43322 1444554 4443322 2334567889999999873 666566789999998 6654332 3334567899999
Q ss_pred CCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCc
Q psy15995 281 SPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKS 349 (683)
Q Consensus 281 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 349 (683)
+++|+..++...++.|..||. +++. ..+..+.+...+.++++ ++++..++.. .+.+..++..+++
T Consensus 233 ~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 233 GAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp CSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred CCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 999997776667789999998 4543 33322335567899999 8887666544 5677777776543
No 194
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.70 E-value=9.2e-15 Score=139.90 Aligned_cols=286 Identities=13% Similarity=0.119 Sum_probs=187.7
Q ss_pred cCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEe
Q psy15995 230 KPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 309 (683)
Q Consensus 230 ~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 309 (683)
..|.++.|++++.. ++..+.++.++.| ..+....+..+...+.+++|++++++++++..++.|.+||..+++....
T Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~ 81 (333)
T 2dg1_A 6 QDLPTLFYSGKSNS-AVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP 81 (333)
T ss_dssp CCCCBCCSCGGGGC-SSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE
T ss_pred cccceeeecCCccc-eeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE
Confidence 34677888988774 6666778888888 3445555666777789999999999888888899999999988876654
Q ss_pred ccCCccccCeEEEEEccCCCEEEEEECC----CcEEEEECCCCceeeEEEe-cCcceeceEEEEecCCEEEEEec-----
Q psy15995 310 LGNPAHKGGVYAVAWKPDGTQLLTASGD----KTCKLWDIETKSVVSEFIM-GNQVEDQQVSCLWQGDYLLTVSL----- 379 (683)
Q Consensus 310 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~----- 379 (683)
... +...+.+++++|+++++++...+ +.|.+||..++.....+.. ........+.+.++++.+++...
T Consensus 82 ~~~--~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~ 159 (333)
T 2dg1_A 82 FVS--HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTN 159 (333)
T ss_dssp EEC--SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTB
T ss_pred eeC--CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccC
Confidence 422 55789999999999877776665 6899999987765433221 12234556677778876665543
Q ss_pred -CCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEE-EEeCCCcEEEEcCCC-CCcceeccCCCCcceeEEEEeCC
Q psy15995 380 -SGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVF-TGSHDGFITRWNAKT-GENDRVQGAGHGNQINGMKATGE 456 (683)
Q Consensus 380 -~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~w~~~~-~~~~~~~~~~~~~~v~~~~~~~~ 456 (683)
.+.+..++... .....+..+...+..++|+|+++.++ +.+.++.|.+|++.+ +........ .
T Consensus 160 ~~~~l~~~~~~~--~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~----~--------- 224 (333)
T 2dg1_A 160 PLGGVYYVSPDF--RTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGA----T--------- 224 (333)
T ss_dssp CCEEEEEECTTS--CCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEE----E---------
T ss_pred CCceEEEEeCCC--CEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccc----e---------
Confidence 24555565543 22233333445678999999998665 445678899998753 221111000 0
Q ss_pred eEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEE
Q psy15995 457 LLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLV 536 (683)
Q Consensus 457 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 536 (683)
+ .... .....+..++++++++++
T Consensus 225 ----------~-~~~~----------------------------------------------~~~~~~~~i~~d~~G~l~ 247 (333)
T 2dg1_A 225 ----------I-PYYF----------------------------------------------TGHEGPDSCCIDSDDNLY 247 (333)
T ss_dssp ----------E-EEEC----------------------------------------------CSSSEEEEEEEBTTCCEE
T ss_pred ----------E-EEec----------------------------------------------CCCCCCCceEECCCCCEE
Confidence 0 0000 000134668899999988
Q ss_pred EEEcCCCcEEEEEcCCCccCcceeecC-----CcCeeEEEECCCCCEEEEEeCCC------eEEEEECC
Q psy15995 537 AVGGADSKVHIYELNNKSLSPKAELDH-----LGPVTDCSFSPSNEYLVASDAHR------KVVLYRVP 594 (683)
Q Consensus 537 ~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~d~------~i~i~~~~ 594 (683)
++...++.|.+||.+ ++......... ...+.+++|+||++.|+.++.++ .|..++..
T Consensus 248 v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 248 VAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp EEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred EEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 887778899999985 43332332221 12689999999988877666553 45555544
No 195
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=1.1e-10 Score=125.20 Aligned_cols=538 Identities=11% Similarity=0.027 Sum_probs=313.8
Q ss_pred CCCeEEEeeCCCCC-eEEEecCCeEEEEeCCCCcccccc-c---C---cccceEEEEECC--CCcEEEEecCCCCEEEEe
Q psy15995 44 RGQPIVLGGDPKGK-NFLYTNGNSVIIRNIENPAISDIY-T---E---HSCAVNVAKYSP--SGFYIASGDISGKVRIWD 113 (683)
Q Consensus 44 ~~~~~~~~~s~~~~-~l~~~~~~~i~v~~~~~~~~~~~~-~---~---h~~~v~~~~~s~--d~~~las~~~dg~i~iwd 113 (683)
.+.+.++...++|+ +.+.+.++.+..||..+.+..... . . ....|.++.... +|+..+ ++.++.|..+|
T Consensus 65 ~n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lwi-~t~~~gl~~~~ 143 (781)
T 3v9f_A 65 GNELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKGLWV-CTYYRGIEYLD 143 (781)
T ss_dssp CSCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSEEEE-EESSSCEEEEE
T ss_pred ccccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCCEEE-EECCCCeeEEE
Confidence 35688898899998 655555547999998877643321 1 1 123699999888 776544 55344599999
Q ss_pred CCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeecccc-----ccCCCe
Q psy15995 114 TVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFH-----PIGGPI 188 (683)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~i 188 (683)
..+++... +...... ......|.++...++|.+.+ ++.++-|..||..+++........ -....|
T Consensus 144 ~~~~~~~~-~~~~~~~--------~l~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i 213 (781)
T 3v9f_A 144 IATGKFTH-YNKSTVP--------ALPSEQTWTATEAEDGKLYI-GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDV 213 (781)
T ss_dssp TTTTEEEE-ESTTTCT--------TCSCCCEEEEEEEETTEEEE-EETTTEEEEEETTTTEEEEECC--------CCSSE
T ss_pred CCCCeEEe-eccCccc--------CCCccceEEEEECCCCCEEE-EecCCCeEEEcCCCCceEeeecCCCCcccCCCCce
Confidence 87664321 1110000 00113467777777776665 444545888998776432211000 113568
Q ss_pred eEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeee-------cCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCC
Q psy15995 189 KDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS-------GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP 261 (683)
Q Consensus 189 ~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 261 (683)
.++...+++...+.. ..+ +..++..+++...... .....|.++...+++. +..|+..+-+.+++..+
T Consensus 214 ~~i~~d~~g~lwigt-~~G---l~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~--lWigt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 214 RCIYKDTNGNIWIGT-SKG---LALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK--LWIATELNGIMILDLQQ 287 (781)
T ss_dssp EEEEECTTCCEEEEE-TTE---EEEEETTTTEEEC-----------CCCCEEEEEECTTSE--EEEEESSSCEEEEETTC
T ss_pred eEEEEcCCCCEEEEe-CCc---HheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC--EEEEeCCCCeEEECCCC
Confidence 899988888766544 321 5566655543322111 1245688998888885 66677756688888766
Q ss_pred Cceeeecc--------------ccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEecc-------CCccccCeE
Q psy15995 262 FKFKMTKQ--------------EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG-------NPAHKGGVY 320 (683)
Q Consensus 262 ~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------~~~~~~~i~ 320 (683)
.+...... .....|.++...++|. |-.|+.++-|..++..+........ .......|.
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 366 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS 366 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE
Confidence 54322111 2345799999999887 5556666779999877654433211 111345689
Q ss_pred EEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeee
Q psy15995 321 AVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKG 400 (683)
Q Consensus 321 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~ 400 (683)
++...+++. |..|+.++-|..++..++.... +.. . ...
T Consensus 367 ~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~-----------------------------------~-----~~~ 404 (781)
T 3v9f_A 367 SVCDDGQGK-LWIGTDGGGINVFENGKRVAIY-NKE-----------------------------------N-----REL 404 (781)
T ss_dssp EEEECTTSC-EEEEEBSSCEEEEETTEEEEEC-C---------------------------------------------C
T ss_pred EEEEcCCCC-EEEEeCCCcEEEEECCCCeEEE-ccC-----------------------------------C-----CCC
Confidence 998888776 5566655668888876432211 000 0 011
Q ss_pred ccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCcceecc-CCCCcceeEEEEe-CCeEEEEEcCCeEEEEeCCCCccc
Q psy15995 401 HNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQG-AGHGNQINGMKAT-GELLYTCGIDDTIKQVDLSSNAYS 478 (683)
Q Consensus 401 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~-~~~~~~v~~~~~~-~~~l~~~~~d~~i~~~~~~~~~~~ 478 (683)
....|.++...+++.+.+ |+.++-+..++..+++...... ......|.++..+ ...|..++. +-+..++..+....
T Consensus 405 ~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~ 482 (781)
T 3v9f_A 405 LSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVI 482 (781)
T ss_dssp CCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCC
T ss_pred CCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEE
Confidence 245688888887776554 6666678899987765433321 1234578888777 567777776 66888887765331
Q ss_pred CCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCcc
Q psy15995 479 GPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPK 558 (683)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 558 (683)
.... ... . ......+.++...+++++.+....+| +..||..+++....
T Consensus 483 ~~~~-~~~--------------------------~----~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~~ 530 (781)
T 3v9f_A 483 HHYD-TSN--------------------------S----QLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRKF 530 (781)
T ss_dssp EEEC-TTT--------------------------S----SCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEEE
T ss_pred eccc-Ccc--------------------------c----ccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEEc
Confidence 1100 000 0 00123567888888887665543344 77788776644321
Q ss_pred eee-c-CCcCeeEEEECCCCCEEEEEeCCCeEEEEECCCCccccccce-eeecccEEEEEecCCCCeEEEeecCCcEEEE
Q psy15995 559 AEL-D-HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEW-GFHSAKVNCVAWSPDSALVASGSLDTTIIIW 635 (683)
Q Consensus 559 ~~~-~-~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw 635 (683)
... + ....|.++...++|.+.++.. +|-+..||..+++....... +.....|.++...++|++.+++ .+| |..+
T Consensus 531 ~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~G-l~~~ 607 (781)
T 3v9f_A 531 NQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST-NTG-ISCY 607 (781)
T ss_dssp CTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC-SSC-EEEE
T ss_pred cCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEc-CCc-eEEE
Confidence 110 0 245689999999998776655 66558888877654322111 1123468889999888876654 455 8888
Q ss_pred eCCCCceeeEeec-CCCCCC--eeEEEEccCCeEEEeeCCCcEEEEe
Q psy15995 636 SLASPAKHIIIKN-AHPQSQ--ITRLQWLDNDLLVSVGQDCNTKIWE 679 (683)
Q Consensus 636 ~~~~~~~~~~~~~-~~~~~~--v~~l~~~~~~~l~s~~~d~~v~vw~ 679 (683)
+..+.+...--.. +-.... ..++....++.|..++.+|- ..++
T Consensus 608 ~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~Gl-~~f~ 653 (781)
T 3v9f_A 608 ITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYFGSINGL-CFFN 653 (781)
T ss_dssp ETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEEEETTEE-EEEC
T ss_pred ECCCCceEEecccCCccccccccCceEECCCCEEEEECCCce-EEEC
Confidence 8776543322111 111122 23444445566777788884 4444
No 196
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.70 E-value=6.8e-15 Score=141.84 Aligned_cols=260 Identities=12% Similarity=0.032 Sum_probs=170.1
Q ss_pred cceeeeEeeccceEEEeec---------CCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCC---ce
Q psy15995 142 TSIRNILVLSIGFYIASGD---------ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR---ER 209 (683)
Q Consensus 142 ~~i~~~~~s~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~---~~ 209 (683)
..+....+ ||++++... .++.|.+||+.+++.... ..+..++|+|||+.|+.+.... ..
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-------~~~~~~~~SpDg~~la~~~~~~~~~~~ 85 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-------ENATMPRISPDGKKIAFMRANEEKKVS 85 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-------ESCEEEEECTTSSEEEEEEEETTTTEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-------ccCCCeEECCCCCEEEEEEeccCCCcc
Confidence 44566667 888877642 267899999998764322 4678899999999999887542 33
Q ss_pred EEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeC---------------------------CCeEEEEcCCCC
Q psy15995 210 FGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSE---------------------------DNTIAVFEGPPF 262 (683)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------------------------d~~i~iw~~~~~ 262 (683)
.+.+++.+.++....... .. +..+.|+|+++. |+.++. ...|.+||+.++
T Consensus 86 ~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~-l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~ 162 (347)
T 2gop_A 86 EIWVADLETLSSKKILEA-KN-IRSLEWNEDSRK-LLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE 162 (347)
T ss_dssp EEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSE-EEEEEECCCC---------CCCC---------CEEEEEEEETTTT
T ss_pred eEEEEECCCCceEEEEcC-CC-ccceeECCCCCE-EEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC
Confidence 345555555554443333 34 999999999996 555442 257899999888
Q ss_pred ceeeeccccccCeEEEEECCCCCEEEEEcCCC-------cEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEE
Q psy15995 263 KFKMTKQEHSRFVQAVRYSPSGSHFASAGFDG-------KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS 335 (683)
Q Consensus 263 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 335 (683)
+....+.. . .+..++|+|+| .++++..++ ...+|.+.+++... +.. + ..+..+ +|||+.|+..+
T Consensus 163 ~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-l~~--~-~~~~~~--spdg~~l~~~~ 233 (347)
T 2gop_A 163 EVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEK-MFE--K-VSFYAV--DSDGERILLYG 233 (347)
T ss_dssp EEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEE-EEE--E-ESEEEE--EECSSCEEEEE
T ss_pred eEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEE-ecc--C-cceeeE--CCCCCEEEEEE
Confidence 76344444 3 78899999999 777775542 33444333555433 322 3 445544 99999998877
Q ss_pred CC--------CcEEEEECCCCceeeEEEecCcceece-EEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEE
Q psy15995 336 GD--------KTCKLWDIETKSVVSEFIMGNQVEDQQ-VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPIT 406 (683)
Q Consensus 336 ~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~ 406 (683)
.+ ..|.+|| +++. ..+.......... ..++ ++ .++++..++.+++| +.. ... ..+..+...|.
T Consensus 234 ~~~~~~~~~~~~l~~~d--~~~~-~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~-g~~-~~~~~~~~~v~ 305 (347)
T 2gop_A 234 KPEKKYMSEHNKLYIYD--GKEV-MGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD-GEI-KPIAKGRHWIM 305 (347)
T ss_dssp CCSSSCCCSSCEEEEEC--SSCE-EESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EES-SSE-EEEECSSSEEE
T ss_pred ccccCCccccceEEEEC--CCce-EeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcC-Cce-EEEecCCCeEE
Confidence 54 3577777 4443 2222222223332 5555 66 88888999999999 873 333 34444577899
Q ss_pred EEEEeCCCCEEEEEeCCCcE-EEEcCC
Q psy15995 407 ALALSPDRGTVFTGSHDGFI-TRWNAK 432 (683)
Q Consensus 407 ~~~~~~~~~~l~~~~~dg~i-~~w~~~ 432 (683)
+++|+| ..+++++.++.. .+|.+.
T Consensus 306 ~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 306 GFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEESS--SEEEEEECSSSCCEEEEES
T ss_pred eeeeeC--cEEEEEcCCCChHHheEeC
Confidence 999999 677777766654 666655
No 197
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.70 E-value=8e-15 Score=137.50 Aligned_cols=245 Identities=10% Similarity=0.031 Sum_probs=163.1
Q ss_pred eeccccccCeEEEEECCCCC-EEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEE
Q psy15995 266 MTKQEHSRFVQAVRYSPSGS-HFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWD 344 (683)
Q Consensus 266 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 344 (683)
..+..+.....+++|+|+++ .++++..++.|..|+..++ ...+.. +...+.+++++|+++++++...++.|.+||
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~--~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMH--PSHHQNGHCLNKQGHLIACSHGLRRLERQR 96 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEES--SCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEEC--CCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence 34444556788999999998 7788888999999998877 444443 567799999999999877766678899999
Q ss_pred CCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCC-
Q psy15995 345 IETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHD- 423 (683)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d- 423 (683)
..+++........ .......+..++++|+|+++++.+..
T Consensus 97 ~~~g~~~~~~~~~----------------------------------------~~~~~~~~~~i~~d~~G~l~vtd~~~g 136 (296)
T 3e5z_A 97 EPGGEWESIADSF----------------------------------------EGKKLNSPNDVCLAPDGSLWFSDPTYG 136 (296)
T ss_dssp STTCCEEEEECEE----------------------------------------TTEECCCCCCEEECTTSCEEEEECSHH
T ss_pred CCCCcEEEEeecc----------------------------------------CCCCCCCCCCEEECCCCCEEEECCccc
Confidence 9777643211000 00112345678899999888874321
Q ss_pred ----------------CcEEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCC
Q psy15995 424 ----------------GFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQ 487 (683)
Q Consensus 424 ----------------g~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~ 487 (683)
+.|..++.. ++. ...
T Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-------------------------------~~~----------------- 167 (296)
T 3e5z_A 137 IDKPEEGYGGEMELPGRWVFRLAPD-GTL-------------------------------SAP----------------- 167 (296)
T ss_dssp HHCGGGSSCCCCCSSSCEEEEECTT-SCE-------------------------------EEE-----------------
T ss_pred cccccccccccccCCCcEEEEECCC-CCE-------------------------------EEe-----------------
Confidence 122222221 110 000
Q ss_pred CceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcC-CCcc---CcceeecC
Q psy15995 488 PRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELN-NKSL---SPKAELDH 563 (683)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~ 563 (683)
......+..++++|+++++++.+.++.|.+|++. ++.+ .... ..+
T Consensus 168 ------------------------------~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~ 216 (296)
T 3e5z_A 168 ------------------------------IRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVE 216 (296)
T ss_dssp ------------------------------ECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCS
T ss_pred ------------------------------ecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCC
Confidence 0011234678999999998777778999999997 4443 1112 224
Q ss_pred CcCeeEEEECCCCCEEEEEeCCCeEEEEECCCCccccccceeeecccEEEEEe-cCCCCeEEEeecCCcEEEEeCCCCc
Q psy15995 564 LGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAW-SPDSALVASGSLDTTIIIWSLASPA 641 (683)
Q Consensus 564 ~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~-s~d~~~l~~~~~d~~v~iw~~~~~~ 641 (683)
...+..++++++|+++++. ++.|.+|+.. ++....... +.. +++++| +|+++.|++++.++ +.-++..+.+
T Consensus 217 ~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~--~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~ 288 (296)
T 3e5z_A 217 PGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLT--PQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRG 288 (296)
T ss_dssp SSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEEC--SSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCB
T ss_pred CCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEEC--CCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccc
Confidence 4567789999999877766 7889999986 554433322 555 899999 68999898888764 4444554433
No 198
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.69 E-value=1.1e-13 Score=132.60 Aligned_cols=281 Identities=13% Similarity=0.090 Sum_probs=190.0
Q ss_pred EECCCCcEEEEecC--CC---CEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeec------
Q psy15995 92 KYSPSGFYIASGDI--SG---KVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGD------ 160 (683)
Q Consensus 92 ~~s~d~~~las~~~--dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~------ 160 (683)
...|+++++.+... .. +|.++|..+++.+.++... ... .++++|||++|+++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g---------------~~p-~i~~spDg~~lyv~n~~~~~~ 90 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG---------------FLP-NPVAAHSGSEFALASTSFSRI 90 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC---------------CCC-CeEECCCCCEEEEEecccccc
Confidence 44578888877653 33 7899999998876554432 223 899999999998875
Q ss_pred ----CCccEEEEeccccceeeecccccc-----CCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceee-eecCCc
Q psy15995 161 ----ISGKVRIWDTVNKEHILKNEFHPI-----GGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE-ISGQSK 230 (683)
Q Consensus 161 ----~d~~i~iwd~~~~~~~~~~~~~~~-----~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 230 (683)
.++.|.+||..+.+.+........ ......++|+|||++|+++.......+.+++ ++++.+.. +....
T Consensus 91 ~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~- 168 (373)
T 2mad_H 91 AKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT- 168 (373)
T ss_pred ccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc-
Confidence 367899999998776654443200 1235689999999999998754333477888 88887766 54322
Q ss_pred CeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeecc-----ccccC-eEEEEECCCCCEEEEEcCCCcEEEEeCCCC
Q psy15995 231 PINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ-----EHSRF-VQAVRYSPSGSHFASAGFDGKVFLYDGASA 304 (683)
Q Consensus 231 ~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~-----~~~~~-v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 304 (683)
++.+.|+++..+++.+.||.+.+++. +++...... ....+ .....+.+++..++..+..+.+.+.|+.++
T Consensus 169 ---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~ 244 (373)
T 2mad_H 169 ---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA 244 (373)
T ss_pred ---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCC
Confidence 25566777666788889999999999 777653221 11112 123456676665555557889999998765
Q ss_pred e--eEEeccCCc--------cccCeEEEEEccCCCEEEEEEC----------CCcEEEEECCCCceeeEEEecCcceece
Q psy15995 305 D--LVSELGNPA--------HKGGVYAVAWKPDGTQLLTASG----------DKTCKLWDIETKSVVSEFIMGNQVEDQQ 364 (683)
Q Consensus 305 ~--~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 364 (683)
. .+..+.... .......++++|+++.+++... .+.|.++|+.+++.+.++..
T Consensus 245 ~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-------- 316 (373)
T 2mad_H 245 GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-------- 316 (373)
T ss_pred cceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC--------
Confidence 3 222221100 1223445778888888777653 24688888877776655421
Q ss_pred EEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCC-EEEEEe-CCCcEEEEcCCCCCccee
Q psy15995 365 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRG-TVFTGS-HDGFITRWNAKTGENDRV 439 (683)
Q Consensus 365 ~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~~w~~~~~~~~~~ 439 (683)
.....+++|+|||+ .++++. .++.|.++|+.+++....
T Consensus 317 -------------------------------------g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 317 -------------------------------------GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred -------------------------------------CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 22467899999999 777776 489999999999888766
No 199
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.68 E-value=7.5e-15 Score=156.17 Aligned_cols=278 Identities=13% Similarity=0.073 Sum_probs=181.1
Q ss_pred eCCCCCeEEEec--C----CeEEEEeCC---CCccccc------ccCcccceEEEEECCCCcEEEEecCC-----CCEEE
Q psy15995 52 GDPKGKNFLYTN--G----NSVIIRNIE---NPAISDI------YTEHSCAVNVAKYSPSGFYIASGDIS-----GKVRI 111 (683)
Q Consensus 52 ~s~~~~~l~~~~--~----~~i~v~~~~---~~~~~~~------~~~h~~~v~~~~~s~d~~~las~~~d-----g~i~i 111 (683)
.+|||+++++.. + ..+.+.+.. +++.... -.+|...+..++|||||++||.++.+ .+|++
T Consensus 114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence 469999999873 2 244555554 4433221 12455689999999999999876543 35999
Q ss_pred EeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCcc--------------EEEEeccccce--
Q psy15995 112 WDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGK--------------VRIWDTVNKEH-- 175 (683)
Q Consensus 112 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~--------------i~iwd~~~~~~-- 175 (683)
||+.+++.+.. ... ...+..++|+|| +.|+.++.++. |++|++.++..
T Consensus 194 ~dl~tg~~~~~-~~~--------------~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~ 257 (741)
T 1yr2_A 194 VGVADGKPLAD-ELK--------------WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD 257 (741)
T ss_dssp EETTTCCEEEE-EEE--------------EEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGC
T ss_pred EECCCCCCCCc-cCC--------------CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhC
Confidence 99999876432 111 022357899999 88888776554 88999977652
Q ss_pred eeeccccccCCCeeEEEEcCCCCeEEEEecCC---ceEEEEEEccCC--CceeeeecCCcCeEEEEeecCCCeEEEEeeC
Q psy15995 176 ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR---ERFGHVFMSETG--TSVGEISGQSKPINSCDFKPSRPFRIITGSE 250 (683)
Q Consensus 176 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 250 (683)
........+...+..+.|+|||++|+....+. ...+.+++.+++ +....+..+...+.... +|+++. |+..+.
T Consensus 258 ~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~-l~~~s~ 335 (741)
T 1yr2_A 258 QPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQ-LWFVSG 335 (741)
T ss_dssp EEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTE-EEEEEC
T ss_pred EEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCE-EEEEEC
Confidence 12222222234588999999999999887543 334667777666 31556666665555554 488876 544443
Q ss_pred ----CCeEEEEcCCCC--ceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCC-CCeeEEeccCCccccCeEEEE
Q psy15995 251 ----DNTIAVFEGPPF--KFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGA-SADLVSELGNPAHKGGVYAVA 323 (683)
Q Consensus 251 ----d~~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~i~~~~ 323 (683)
++.|.+||+.++ +....+..+...+..+.++ ++.++++...++..++|... ++.....+..+ ..+.+..+.
T Consensus 336 ~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~-~~~~v~~~~ 413 (741)
T 1yr2_A 336 DGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLP-GIGSASGLS 413 (741)
T ss_dssp TTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCS-SSCEEEEEE
T ss_pred CCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCC-CCeEEEEee
Confidence 456999998774 3444444555556677777 55677888888877776543 45555555431 356788999
Q ss_pred EccCCCEEEEEE----CCCcEEEEECCCCc
Q psy15995 324 WKPDGTQLLTAS----GDKTCKLWDIETKS 349 (683)
Q Consensus 324 ~~~~~~~l~~~~----~dg~i~iwd~~~~~ 349 (683)
++|+++.++... ..+++.+||+.+++
T Consensus 414 ~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 414 GRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp CCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred cCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 999988666432 24679999998876
No 200
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.67 E-value=4.4e-14 Score=130.65 Aligned_cols=241 Identities=9% Similarity=-0.033 Sum_probs=164.9
Q ss_pred CeEEEeeCCCCCeEE-E-ecCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCccccccc
Q psy15995 46 QPIVLGGDPKGKNFL-Y-TNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN 123 (683)
Q Consensus 46 ~~~~~~~s~~~~~l~-~-~~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~ 123 (683)
.+..++++|+|++++ + ..++.|.+||..+.........+...+.+++++++|+++++.. ++.|.+||..+.... .+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-EC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-ee
Confidence 778899999999776 4 3568999999877654433334446788999999999777666 889999998765322 11
Q ss_pred ccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEE
Q psy15995 124 EFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV 203 (683)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 203 (683)
... ....+..+++.++|+.+++...++.|.+|+..+..... ........+..++++++++..++.
T Consensus 103 ~~~-------------~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~--~~~~~~~~p~~i~~~~~g~l~v~~ 167 (270)
T 1rwi_B 103 PFD-------------GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV--LPFTGLNDPDGVAVDNSGNVYVTD 167 (270)
T ss_dssp CCC-------------SCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE--CCCCSCCSCCCEEECTTCCEEEEE
T ss_pred ecC-------------CcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe--eccccCCCceeEEEeCCCCEEEEE
Confidence 111 11456789999999988887778899999866543321 111222467899999999844443
Q ss_pred ecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCC
Q psy15995 204 GEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPS 283 (683)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~ 283 (683)
..+. .+.+++.+.+........+...+..+++++++. ++++...++.|.+|+............+...+.+++++++
T Consensus 168 ~~~~--~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~ 244 (270)
T 1rwi_B 168 TDNN--RVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSD 244 (270)
T ss_dssp GGGT--EEEEECTTTCCEEECCCSSCCSEEEEEECTTCC-EEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTT
T ss_pred CCCC--EEEEEecCCCceEeecccCCCCceEEEECCCCC-EEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCC
Confidence 3222 256666655544333334446789999999995 4666667889999998765544333334467899999999
Q ss_pred CCEEEEEcCCCcEEEEeCCCCee
Q psy15995 284 GSHFASAGFDGKVFLYDGASADL 306 (683)
Q Consensus 284 ~~~l~~~~~dg~i~iw~~~~~~~ 306 (683)
|+.+++...++.|++++....+.
T Consensus 245 g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 245 RTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CCEEEEEGGGTEEEEECCCGGGS
T ss_pred CCEEEEECCCCEEEEEcCCCccc
Confidence 99888888899999999876543
No 201
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.67 E-value=8.6e-15 Score=140.25 Aligned_cols=277 Identities=11% Similarity=0.013 Sum_probs=186.7
Q ss_pred CCCCCeEEEecC------CeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEec----------CCCCEEEEeCCC
Q psy15995 53 DPKGKNFLYTNG------NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD----------ISGKVRIWDTVN 116 (683)
Q Consensus 53 s~~~~~l~~~~~------~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~----------~dg~i~iwd~~~ 116 (683)
.|+++++...+. +.|.++|..+++.+.++.--..+ .+++||||++|+++. .++.|.++|..+
T Consensus 81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 81 APDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence 467777666543 69999999999998888755555 899999999888765 367899999999
Q ss_pred cccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecC--CccEEEEeccccceeeecccccc-----CCCee
Q psy15995 117 KEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDI--SGKVRIWDTVNKEHILKNEFHPI-----GGPIK 189 (683)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~-----~~~i~ 189 (683)
.+.+.++........ ........++++|||++|+++.. ++.|.+.|+.+++.+........ .+.-.
T Consensus 159 ~~vv~~I~v~g~~r~-------~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~ 231 (426)
T 3c75_H 159 FLPIADIELPDAPRF-------LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTV 231 (426)
T ss_dssp CCEEEEEEETTCCCC-------CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred CcEEEEEECCCcccc-------ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcE
Confidence 988777654310000 00023567899999999998764 57899999999887665554321 00111
Q ss_pred EEEEcCCCCeEEEEecCCceEEEEEEccCCCcee----eeecCCcCe-EEEEeecCCCeEEEEeeCCCeEEEEcCCCCce
Q psy15995 190 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVG----EISGQSKPI-NSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF 264 (683)
Q Consensus 190 ~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v-~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~ 264 (683)
.+++++||+.+++.. ..++... .+.....++ ..+.|.+++.. ++..+..+.+.+.|......
T Consensus 232 ~v~~~~dG~~~~V~~------------~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~-~~~~s~~g~V~ViD~~~~~~ 298 (426)
T 3c75_H 232 FYMNCRDGSLARVDF------------ADGETKVTNTEVFHTEDELLINHPAFSLRSGR-LVWPTYTGKIFQADLTAEGA 298 (426)
T ss_dssp EEEEETTSSEEEEEC------------CTTCCEEEECCCCSCTTSCBCSCCEECTTTCE-EEEEBTTSEEEEEEECSSCE
T ss_pred EEEEcCCCCEEEEEC------------CCCcEEEEeeeeeccCCCceeeEeeecCCCCE-EEEEeCCCcEEEEeccCCce
Confidence 244555555444433 2222221 111111221 23567888875 55556678999999765432
Q ss_pred ee--ecc----------ccccCeEEEEECCCCCEEEEEcC----------CCcEEEEeCCCCeeEEeccCCccccCeEEE
Q psy15995 265 KM--TKQ----------EHSRFVQAVRYSPSGSHFASAGF----------DGKVFLYDGASADLVSELGNPAHKGGVYAV 322 (683)
Q Consensus 265 ~~--~~~----------~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~ 322 (683)
.. .+. ........++++|+++.+++... ++.|.++|..+.+.+..+.. ......+
T Consensus 299 ~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v---g~~P~gi 375 (426)
T 3c75_H 299 TFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL---GHEIDSI 375 (426)
T ss_dssp EECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEE
T ss_pred EEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC---CCCcCeE
Confidence 21 100 01122223689999987777642 35799999999999999863 3358899
Q ss_pred EEccCCC-EEEEEE-CCCcEEEEECCCCceeeEE
Q psy15995 323 AWKPDGT-QLLTAS-GDKTCKLWDIETKSVVSEF 354 (683)
Q Consensus 323 ~~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~ 354 (683)
+|+||++ ++++.. .++.|.++|+.+++.+.++
T Consensus 376 a~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 376 NVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 9999999 888888 5899999999999998876
No 202
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.66 E-value=9.5e-14 Score=127.17 Aligned_cols=238 Identities=10% Similarity=0.048 Sum_probs=175.6
Q ss_pred CCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccc
Q psy15995 95 PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKE 174 (683)
Q Consensus 95 ~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~ 174 (683)
..+++|++++.++.|.+||.++++.+.++..+.. ..+..+.++|+|++|++ .++.|..||. +++
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~-------------~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~ 66 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG-------------WECNSVAATKAGEILFS--YSKGAKMITR-DGR 66 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTT-------------CCCCEEEECTTSCEEEE--CBSEEEEECT-TSC
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc-------------CCCcCeEECCCCCEEEe--CCCCEEEECC-CCC
Confidence 3467999999999999999999998888765421 24678889999998883 4778999999 788
Q ss_pred eeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEc-cCCCceeeeec------CCcCeEEEEeecCCCeEEEE
Q psy15995 175 HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMS-ETGTSVGEISG------QSKPINSCDFKPSRPFRIIT 247 (683)
Q Consensus 175 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~ 247 (683)
.+...... ....+.++.+.|+|+.+++.+.+. ..++.+ ..|+.+..+.. +......+++.+++++ +++
T Consensus 67 ~~W~~~~~-~~~~~~~~~~~~dG~~lv~~~~~~---~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~-lv~ 141 (276)
T 3no2_A 67 ELWNIAAP-AGCEMQTARILPDGNALVAWCGHP---STILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNY-LVP 141 (276)
T ss_dssp EEEEEECC-TTCEEEEEEECTTSCEEEEEESTT---EEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCE-EEE
T ss_pred EEEEEcCC-CCccccccEECCCCCEEEEecCCC---CEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCE-EEE
Confidence 77766542 224688999999999999877632 233333 26776666542 2234556788899985 888
Q ss_pred eeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCc----cccCeEEEE
Q psy15995 248 GSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPA----HKGGVYAVA 323 (683)
Q Consensus 248 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----~~~~i~~~~ 323 (683)
...++.|..||.+ ++.+..+... ..+.++...++|+.++++..++.|..+|..+++.+..+.... .-..+..++
T Consensus 142 ~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~ 219 (276)
T 3no2_A 142 LFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLF 219 (276)
T ss_dssp ETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEE
T ss_pred ecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccce
Confidence 8899999999987 9988887754 346678889999999988888899999999999988875311 112378888
Q ss_pred EccCCCEEEEEECC--------CcEEEEEC-CCCceeeEEE
Q psy15995 324 WKPDGTQLLTASGD--------KTCKLWDI-ETKSVVSEFI 355 (683)
Q Consensus 324 ~~~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~ 355 (683)
..+++..+++.... +..+++.+ .+++.+.++.
T Consensus 220 ~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~ 260 (276)
T 3no2_A 220 PLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLN 260 (276)
T ss_dssp ECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred EcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEec
Confidence 99999988776421 13345555 4566655553
No 203
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.65 E-value=3.8e-14 Score=129.81 Aligned_cols=247 Identities=11% Similarity=0.056 Sum_probs=179.8
Q ss_pred CCCeEEEe-cCCeEEEEeCCCCcccccccCcc-cceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCc
Q psy15995 55 KGKNFLYT-NGNSVIIRNIENPAISDIYTEHS-CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPI 132 (683)
Q Consensus 55 ~~~~l~~~-~~~~i~v~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 132 (683)
.+++|+++ .++.|.+||.++++.+..+..+. ..+.+++++|+|++|++ .++.|..||. +++.+.++.....
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~---- 76 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAG---- 76 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTT----
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCC----
Confidence 34566665 57899999999999998888776 57899999999999984 4667999999 7888877765310
Q ss_pred ccceeeeeecceeeeEeeccceEEEeecC-CccEEEEeccccceeeeccccc----cCCCeeEEEEcCCCCeEEEEecCC
Q psy15995 133 KDIGTLLSLTSIRNILVLSIGFYIASGDI-SGKVRIWDTVNKEHILKNEFHP----IGGPIKDIAWSPDNQRMVVVGEGR 207 (683)
Q Consensus 133 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~~~ 207 (683)
..+..+.+.++|+++++.+. ++.|..+|. +++.+....+.. .......+++.++|+++++...+.
T Consensus 77 ---------~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~ 146 (276)
T 3no2_A 77 ---------CEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATS 146 (276)
T ss_dssp ---------CEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTT
T ss_pred ---------ccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCC
Confidence 24667889999999999877 788888886 566555544321 112455678899999988766543
Q ss_pred ceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccc------cCeEEEEEC
Q psy15995 208 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS------RFVQAVRYS 281 (683)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~------~~v~~~~~~ 281 (683)
.+..++.+ |+.+.++... ..+..+.+.+++.. ++++..++.|..+|..+++.+..+..+. ..+..+...
T Consensus 147 --~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~-~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~ 221 (276)
T 3no2_A 147 --EVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDC-LVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPL 221 (276)
T ss_dssp --EEEEECTT-SCEEEEEECS-SCCCEEEECTTSCE-EEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEEC
T ss_pred --EEEEECCC-CCEEEEEECC-CCccceeEcCCCCE-EEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEc
Confidence 36777777 9988888765 34567788888884 7888888899999999899988875432 237889999
Q ss_pred CCCCEEEEEcCC--------CcEEEEeC-CCCeeEEeccCCccccCeEEEE
Q psy15995 282 PSGSHFASAGFD--------GKVFLYDG-ASADLVSELGNPAHKGGVYAVA 323 (683)
Q Consensus 282 ~~~~~l~~~~~d--------g~i~iw~~-~~~~~~~~~~~~~~~~~i~~~~ 323 (683)
++|+.+++.... +..+++++ .+++.+..+.....-+.+.+++
T Consensus 222 ~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 222 QNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp TTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred CCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 999988776311 12334444 5778777776544455555554
No 204
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.65 E-value=9.8e-14 Score=128.26 Aligned_cols=242 Identities=12% Similarity=0.012 Sum_probs=164.4
Q ss_pred ceEEEEECCCCcEEE-EecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccE
Q psy15995 87 AVNVAKYSPSGFYIA-SGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKV 165 (683)
Q Consensus 87 ~v~~~~~s~d~~~la-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i 165 (683)
...+++++++|++++ +...++.|.+||..+....... .. ....+..+++.++|+.+++.. ++.|
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~-~~-------------~~~~p~~i~~~~~g~l~v~~~-~~~i 89 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP-FN-------------GLYQPQGLAVDGAGTVYVTDF-NNRV 89 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECC-CC-------------SCCSCCCEEECTTCCEEEEET-TTEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEe-eC-------------CcCCcceeEECCCCCEEEEcC-CCEE
Confidence 678999999999777 5467889999997655322110 00 114567899999998666666 8899
Q ss_pred EEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEE
Q psy15995 166 RIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRI 245 (683)
Q Consensus 166 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 245 (683)
.+||....... .... .....+..++++|+|+..++...+. . +.+++..+.............+..+++++++. ++
T Consensus 90 ~~~d~~~~~~~-~~~~-~~~~~p~~i~~~~~g~l~v~~~~~~-~-i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~ 164 (270)
T 1rwi_B 90 VTLAAGSNNQT-VLPF-DGLNYPEGLAVDTQGAVYVADRGNN-R-VVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VY 164 (270)
T ss_dssp EEECTTCSCCE-ECCC-CSCSSEEEEEECTTCCEEEEEGGGT-E-EEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EE
T ss_pred EEEeCCCceEe-eeec-CCcCCCcceEECCCCCEEEEECCCC-E-EEEEECCCceeEeeccccCCCceeEEEeCCCC-EE
Confidence 99998765432 1111 1225688999999998544433322 1 34443333222222223345678999999997 46
Q ss_pred EEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEc
Q psy15995 246 ITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWK 325 (683)
Q Consensus 246 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~ 325 (683)
++...++.|.+|+............+...+..++++++|..+++...++.|.+|+........... .+...+.+++++
T Consensus 165 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~--~~~~~p~~i~~~ 242 (270)
T 1rwi_B 165 VTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPF--TGLNTPLAVAVD 242 (270)
T ss_dssp EEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCC--CSCSCEEEEEEC
T ss_pred EEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeecc--CCCCCceeEEEC
Confidence 666678899999987766544433444678999999999877777778899999987654433221 133578999999
Q ss_pred cCCCEEEEEECCCcEEEEECCCCce
Q psy15995 326 PDGTQLLTASGDKTCKLWDIETKSV 350 (683)
Q Consensus 326 ~~~~~l~~~~~dg~i~iwd~~~~~~ 350 (683)
++++.+++...++.|+++++...+.
T Consensus 243 ~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 243 SDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp TTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CCCCEEEEECCCCEEEEEcCCCccc
Confidence 9999888888899999999886654
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.64 E-value=1.4e-13 Score=131.94 Aligned_cols=283 Identities=16% Similarity=0.137 Sum_probs=185.8
Q ss_pred cCCCeEEEEeeCC----CeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEc----------CCCcEEEEeCCCC
Q psy15995 239 PSRPFRIITGSED----NTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG----------FDGKVFLYDGASA 304 (683)
Q Consensus 239 ~~~~~~l~~~~~d----~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~ 304 (683)
++++..+++...+ +.|.++|..+++.+..+..-..+ .++++||+++++++. .++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 4555434444433 79999999999999888755555 899999999888776 3678999999999
Q ss_pred eeEEeccCCc-----cccCeEEEEEccCCCEEEEEEC--CCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEE
Q psy15995 305 DLVSELGNPA-----HKGGVYAVAWKPDGTQLLTASG--DKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTV 377 (683)
Q Consensus 305 ~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 377 (683)
+.+..+..+. .......++++||+++++++.. ++.|.+.|+.+++.+.++.....
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~------------------ 221 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC------------------ 221 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE------------------
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc------------------
Confidence 9988875320 0134567899999999999874 57899999999988777643210
Q ss_pred ecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCC-CEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEeCC
Q psy15995 378 SLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDR-GTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATGE 456 (683)
Q Consensus 378 ~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~ 456 (683)
....|++ ..+++.+.||.+.+.+..+++......
T Consensus 222 ------------------------------~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~--------------- 256 (426)
T 3c75_H 222 ------------------------------YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT--------------- 256 (426)
T ss_dssp ------------------------------EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC---------------
T ss_pred ------------------------------eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee---------------
Confidence 0111211 233334444444444442222111000
Q ss_pred eEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEE
Q psy15995 457 LLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLV 536 (683)
Q Consensus 457 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 536 (683)
.+++..... -...+.+.++++.+
T Consensus 257 -----------~~~~v~~~p----------------------------------------------~~~~~~~~~dg~~~ 279 (426)
T 3c75_H 257 -----------EVFHTEDEL----------------------------------------------LINHPAFSLRSGRL 279 (426)
T ss_dssp -----------CCCSCTTSC----------------------------------------------BCSCCEECTTTCEE
T ss_pred -----------eeeccCCCc----------------------------------------------eeeEeeecCCCCEE
Confidence 000100000 01123567777776
Q ss_pred EEEcCCCcEEEEEcCCCccC--cceee------c---CCcCeeEEEECCCCCEEEEEeC----------CCeEEEEECCC
Q psy15995 537 AVGGADSKVHIYELNNKSLS--PKAEL------D---HLGPVTDCSFSPSNEYLVASDA----------HRKVVLYRVPD 595 (683)
Q Consensus 537 ~~~~~dg~i~i~d~~~~~~~--~~~~~------~---~~~~v~~~~~s~~~~~l~~~~~----------d~~i~i~~~~~ 595 (683)
+.....+.+.+.|..+.... ..... . .......++++||++++++... ++.|.++|..+
T Consensus 280 ~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T 359 (426)
T 3c75_H 280 VWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET 359 (426)
T ss_dssp EEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred EEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC
Confidence 66677788888888654321 11110 0 0112224789999998877653 35799999999
Q ss_pred CccccccceeeecccEEEEEecCCCC-eEEEee-cCCcEEEEeCCCCceeeEe
Q psy15995 596 FELAHNKEWGFHSAKVNCVAWSPDSA-LVASGS-LDTTIIIWSLASPAKHIII 646 (683)
Q Consensus 596 ~~~~~~~~~~~h~~~v~~~~~s~d~~-~l~~~~-~d~~v~iw~~~~~~~~~~~ 646 (683)
.+.+.....+ .....++|+|||+ +|+++. .++.|.++|+.+.+.+..+
T Consensus 360 ~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 360 GERINKIELG---HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp CCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 9998777654 3588999999999 888877 5899999999999988876
No 206
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=1.1e-09 Score=117.38 Aligned_cols=537 Identities=10% Similarity=0.038 Sum_probs=307.6
Q ss_pred ccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCcc
Q psy15995 85 SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGK 164 (683)
Q Consensus 85 ~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~ 164 (683)
...|.+|.-.++| +|-.|..+| +..+|-.+- ..+.. +.... .. .......|.++...++|..|-.++.++-
T Consensus 18 ~n~V~~I~qD~~G-~lWigT~~G-L~ryDG~~f---~~~~~-~~~~~--~~-~~l~~n~I~~i~~d~~g~~lWigt~~~G 88 (781)
T 3v9f_A 18 NNYVLSITQDKQG-FLWFATEEG-LNKFDGTRF---ITYYK-EEQSS--SV-QSITGNELNEVYTDPVQPVIWIATQRAG 88 (781)
T ss_dssp CSBEEEEEECTTS-CEEEEESSC-EEEECSSSE---EEECC-CSSCS--SS-CCCSCSCEEEEEECSSSSEEEEEESSSC
T ss_pred cCEeEEEEECCCC-CEEEccCCc-CccccCCce---EEEEc-CCCCC--cc-ccccccccceEEEcCCCCEEEEEeCCCC
Confidence 4579999999998 466666776 777775432 12211 10000 00 0011256888888888873555666657
Q ss_pred EEEEeccccceeeec-c-cc---ccCCCeeEEEEcC--CCCeEEEEe-cCCceEEEEEEccCCCceeeee-----cCCcC
Q psy15995 165 VRIWDTVNKEHILKN-E-FH---PIGGPIKDIAWSP--DNQRMVVVG-EGRERFGHVFMSETGTSVGEIS-----GQSKP 231 (683)
Q Consensus 165 i~iwd~~~~~~~~~~-~-~~---~~~~~i~~~~~s~--~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 231 (683)
+..||..+++..... . .. .....|.++...+ ++.. .++. ..+ +..++.++++...... .....
T Consensus 89 l~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~l-wi~t~~~g---l~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (781)
T 3v9f_A 89 LNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKGL-WVCTYYRG---IEYLDIATGKFTHYNKSTVPALPSEQ 164 (781)
T ss_dssp EEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSEE-EEEESSSC---EEEEETTTTEEEEESTTTCTTCSCCC
T ss_pred cceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCCE-EEEECCCC---eeEEECCCCeEEeeccCcccCCCccc
Confidence 999998876532210 0 00 0123688888877 6654 4444 322 4555555443222111 12345
Q ss_pred eEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeecc-------ccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCC
Q psy15995 232 INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ-------EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASA 304 (683)
Q Consensus 232 v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 304 (683)
|.++...+++. +..++.++.+..||..+.+...... .....|.++...+++.+.+ ++.+ -+.+||..++
T Consensus 165 i~~i~~d~~g~--lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~ 240 (781)
T 3v9f_A 165 TWTATEAEDGK--LYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNANTE 240 (781)
T ss_dssp EEEEEEEETTE--EEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEE-EETT-EEEEEETTTT
T ss_pred eEEEEECCCCC--EEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECCCCC
Confidence 88888888875 5567766678889977765433211 1235689999988887555 4444 5899998776
Q ss_pred eeEEeccCC-----ccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEE-------ec---C---cceeceEE
Q psy15995 305 DLVSELGNP-----AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFI-------MG---N---QVEDQQVS 366 (683)
Q Consensus 305 ~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~---~---~~~~~~~~ 366 (683)
+........ .....|.++...+++. |..++..+-|.++|..++....... .. . ......+.
T Consensus 241 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~ 319 (781)
T 3v9f_A 241 TFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIF 319 (781)
T ss_dssp EEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEE
T ss_pred cEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEE
Confidence 654322110 1345799999888776 5556664568889987765432111 10 0 11122222
Q ss_pred EEecCCEEEEEecCCcEEEEecCCCCcceeee--------eeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCcce
Q psy15995 367 CLWQGDYLLTVSLSGFISYLDVNNPSTPIRVI--------KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDR 438 (683)
Q Consensus 367 ~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~ 438 (683)
... ...+.+|+.++-+..++.....-..... ......|.++...+++.+ ..|+.++-|..++..++....
T Consensus 320 ~D~-~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~ 397 (781)
T 3v9f_A 320 QDS-FNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVAIY 397 (781)
T ss_dssp ECS-SCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEEEC
T ss_pred EeC-CCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeEEE
Confidence 222 3457778878888888876532111100 012356899988887764 455656668889876543322
Q ss_pred ecc--CCCCcceeEEEEe-CCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCcee
Q psy15995 439 VQG--AGHGNQINGMKAT-GELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKV 515 (683)
Q Consensus 439 ~~~--~~~~~~v~~~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (683)
... ......|.++..+ ...|..++.++-+..++..+.........
T Consensus 398 ~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~-------------------------------- 445 (781)
T 3v9f_A 398 NKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELE-------------------------------- 445 (781)
T ss_dssp C-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCST--------------------------------
T ss_pred ccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccC--------------------------------
Confidence 111 1234568888877 66778888777888888765432111000
Q ss_pred eeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCcceeec----CCcCeeEEEECCCCCEEEEEeCCCeEEEE
Q psy15995 516 SSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD----HLGPVTDCSFSPSNEYLVASDAHRKVVLY 591 (683)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d~~i~i~ 591 (683)
......+.++...+++.+.+. +. +-+..|+..+++........ ....|.++...++|.+.+.....| +..|
T Consensus 446 --~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~ 520 (781)
T 3v9f_A 446 --KNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIY 520 (781)
T ss_dssp --TTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEE
T ss_pred --CCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEE
Confidence 001234677777777765554 44 55889998876654222111 146789999999998776554344 7778
Q ss_pred ECCCCccccccc-eeeecccEEEEEecCCCCeEEEeecCCcEEEEeCCCCceeeEe-ecCCCCCCeeEEEEccCCeEEEe
Q psy15995 592 RVPDFELAHNKE-WGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIII-KNAHPQSQITRLQWLDNDLLVSV 669 (683)
Q Consensus 592 ~~~~~~~~~~~~-~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~l~s~ 669 (683)
+..+++...... .+.....|.++...++|++.+... +|.|..||..+++....- ..+-....|.++...+++.|..+
T Consensus 521 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~ 599 (781)
T 3v9f_A 521 TPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAS 599 (781)
T ss_dssp CTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEE
T ss_pred eCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEE
Confidence 887665432211 011345789999999988666544 665588998776533211 11223456888877744444444
Q ss_pred eCCCcEEEEee
Q psy15995 670 GQDCNTKIWEI 680 (683)
Q Consensus 670 ~~d~~v~vw~~ 680 (683)
+..| |..++.
T Consensus 600 t~~G-l~~~~~ 609 (781)
T 3v9f_A 600 TNTG-ISCYIT 609 (781)
T ss_dssp CSSC-EEEEET
T ss_pred cCCc-eEEEEC
Confidence 5555 444543
No 207
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.64 E-value=4.1e-14 Score=149.44 Aligned_cols=280 Identities=11% Similarity=-0.010 Sum_probs=181.6
Q ss_pred eeccceEEEeecCCc---cEEEE--eccccceeeecccc----ccCCCeeEEEEcCCCCeEEEEecCC---ceEEEEEEc
Q psy15995 149 VLSIGFYIASGDISG---KVRIW--DTVNKEHILKNEFH----PIGGPIKDIAWSPDNQRMVVVGEGR---ERFGHVFMS 216 (683)
Q Consensus 149 ~s~~~~~l~~~~~d~---~i~iw--d~~~~~~~~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~~~---~~~~~~~~~ 216 (683)
.+|+|.+++....++ .-.+| +...++........ .+...+..++|||||++|+...... ...+++++.
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 458898888765543 33444 44344322222111 2334688999999999999775422 256888998
Q ss_pred cCCCceeeeecCCcCe--EEEEeecCCCeEEEEeeCCCe-------------EEEEcCCCCc----eeeeccccccCeEE
Q psy15995 217 ETGTSVGEISGQSKPI--NSCDFKPSRPFRIITGSEDNT-------------IAVFEGPPFK----FKMTKQEHSRFVQA 277 (683)
Q Consensus 217 ~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~d~~-------------i~iw~~~~~~----~~~~~~~~~~~v~~ 277 (683)
++++.+. ..+...+ ..++|+|+++. |+.++.|.. |++|++.+++ .+.....+...+..
T Consensus 155 ~tg~~~~--~~~~~~~~~~~~~wspDg~~-l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~ 231 (695)
T 2bkl_A 155 DSGEWSK--VDVIEGGKYATPKWTPDSKG-FYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQ 231 (695)
T ss_dssp TTCCBCS--SCCBSCCTTCCCEECTTSSE-EEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEE
T ss_pred CCCCCcC--CcccCcccccceEEecCCCE-EEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEE
Confidence 8887651 1122222 68999999996 777777665 9999988776 33334445667899
Q ss_pred EEECCCCCEEEEEcCCC----cEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEEC----CCcEEEEECCCCc
Q psy15995 278 VRYSPSGSHFASAGFDG----KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASG----DKTCKLWDIETKS 349 (683)
Q Consensus 278 ~~~~~~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~ 349 (683)
+.|+|||++|+..+.++ .|++|+..+++...... +...+....+ ++++ ++..+. ++.|.+||+.++.
T Consensus 232 ~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~---~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 232 SDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVK---GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp EEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEE---CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred EEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeec---CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence 99999999888877665 78888766665443332 4445556666 5666 555443 5789999998765
Q ss_pred e--eeEEEecC-cceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeec-cccEEEEEEeCCCCEEEEEe----
Q psy15995 350 V--VSEFIMGN-QVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGH-NKPITALALSPDRGTVFTGS---- 421 (683)
Q Consensus 350 ~--~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~---- 421 (683)
. ...+.... ......+.+. ++..+++...++..++|...........+..+ ...+..+.++|+++.++...
T Consensus 307 ~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~ 385 (695)
T 2bkl_A 307 RASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFT 385 (695)
T ss_dssp GGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETT
T ss_pred ccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCC
Confidence 3 23333332 2233344444 66677788888888887665323334444444 56677888999998777333
Q ss_pred CCCcEEEEcCCCCCcc
Q psy15995 422 HDGFITRWNAKTGEND 437 (683)
Q Consensus 422 ~dg~i~~w~~~~~~~~ 437 (683)
..++|++||+.+++..
T Consensus 386 ~P~~v~~~d~~~g~~~ 401 (695)
T 2bkl_A 386 TPRQIYKTSVSTGKSE 401 (695)
T ss_dssp EEEEEEEEETTTCCEE
T ss_pred CCCEEEEEECCCCcEE
Confidence 3478999999887753
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.63 E-value=1.5e-12 Score=122.59 Aligned_cols=281 Identities=12% Similarity=0.058 Sum_probs=188.5
Q ss_pred cccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCce
Q psy15995 271 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSV 350 (683)
Q Consensus 271 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 350 (683)
....+.++++.++|+..++...++.|.+||.. ++... +..+.....+.++++.++++.+++...++.|..+|.. ++.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 34578899999999988877778999999987 55443 2222344678999999999877776667889999988 554
Q ss_pred eeEEEec-CcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEE
Q psy15995 351 VSEFIMG-NQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRW 429 (683)
Q Consensus 351 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 429 (683)
..+... .......+.+.+++...++...++.+..++.. +......+......+.++++.++++..++...++.|..+
T Consensus 95 -~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 172 (300)
T 2qc5_A 95 -TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRI 172 (300)
T ss_dssp -EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred -EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEE
Confidence 333332 22345566666777777776668889999886 222211222234578899999999876666667888888
Q ss_pred cCCCCCcceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEE
Q psy15995 430 NAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIV 509 (683)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (683)
+. +++........
T Consensus 173 ~~-~g~~~~~~~~~------------------------------------------------------------------ 185 (300)
T 2qc5_A 173 TN-TGKLEEYPLPT------------------------------------------------------------------ 185 (300)
T ss_dssp CT-TCCEEEEECSS------------------------------------------------------------------
T ss_pred CC-CCcEEEeeCCC------------------------------------------------------------------
Confidence 87 33322111000
Q ss_pred eCCceeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEeCCCeEE
Q psy15995 510 ENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVV 589 (683)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 589 (683)
....+..+++++++++.++....+.|.+|+. ++.............+.+++++++|++.++...++.|.
T Consensus 186 ----------~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 254 (300)
T 2qc5_A 186 ----------NAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIG 254 (300)
T ss_dssp ----------TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEE
T ss_pred ----------CCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEE
Confidence 0113567888888887777767778999988 34332221112456688999999999777776778999
Q ss_pred EEECCCCccccccceeeecccEEEEEecCCCCeEEEeecCCcEEEEeCC
Q psy15995 590 LYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLA 638 (683)
Q Consensus 590 i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~ 638 (683)
.|+. +++... .........+.+++++++|++.++.. . .|..++.+
T Consensus 255 ~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 255 RITN-DNTIQE-YQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp EECT-TSCEEE-EECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred EECC-CCcEEE-EECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 9998 444332 11111345688999999998777665 4 67766653
No 209
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.63 E-value=3e-14 Score=151.55 Aligned_cols=283 Identities=10% Similarity=-0.024 Sum_probs=174.7
Q ss_pred CCCCCceeecCCCCC--Cceeeecc-------cceee-c--CCCcccCCCeEEEeeCCCCCeEEEecC------CeEEEE
Q psy15995 9 TQRGQPIVLGGDPKG--KNFLYTNG-------NKYIF-A--TLPRTQRGQPIVLGGDPKGKNFLYTNG------NSVIIR 70 (683)
Q Consensus 9 ~p~~~~~~~~~~~~~--~~~~~~~~-------~~~~~-~--~~~~~~~~~~~~~~~s~~~~~l~~~~~------~~i~v~ 70 (683)
+|+|+.+...-...+ ...++... ..+++ . .+.......+..++|||||++||++.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 499998877554444 23333321 11221 1 122222225667899999999999842 369999
Q ss_pred eCCCCcccccccCcccceEEEEECCCCcEEEEecCCCC--------------EEEEeCCCcccccccccccCCCCcccce
Q psy15995 71 NIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGK--------------VRIWDTVNKEHILKNEFHPIGGPIKDIG 136 (683)
Q Consensus 71 ~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~--------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 136 (683)
|+++++.+.. ..+...+..++|||| +.|+.++.++. |.+|++.++.....+-.....
T Consensus 195 dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~------- 265 (741)
T 1yr2_A 195 GVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPE------- 265 (741)
T ss_dssp ETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTT-------
T ss_pred ECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCC-------
Confidence 9999987543 223333468999999 99988776544 899998776421111111100
Q ss_pred eeeeecceeeeEeeccceEEEeecCCc-----cEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCC--ce
Q psy15995 137 TLLSLTSIRNILVLSIGFYIASGDISG-----KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR--ER 209 (683)
Q Consensus 137 ~~~~~~~i~~~~~s~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~--~~ 209 (683)
....+..+.|+|||++|+..+.++ .|.+||+.++.......+..+...+... ++|+|+.+++.+... ..
T Consensus 266 ---~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~ 341 (741)
T 1yr2_A 266 ---LPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLK 341 (741)
T ss_dssp ---CTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTC
T ss_pred ---CCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCC
Confidence 002367889999999998876543 8999999876211011222223344444 348999998887643 23
Q ss_pred EEEEEEccCC-Cceee-eecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCC-CCceeeeccc-cccCeEEEEECCCCC
Q psy15995 210 FGHVFMSETG-TSVGE-ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP-PFKFKMTKQE-HSRFVQAVRYSPSGS 285 (683)
Q Consensus 210 ~~~~~~~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~-~~~~~~~~~~-~~~~v~~~~~~~~~~ 285 (683)
.+.+++.+.+ ..... +..+...+..+.+. +..++++...|+..++|... +++....+.. +...+..+.++|+++
T Consensus 342 ~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~ 419 (741)
T 1yr2_A 342 KIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDR 419 (741)
T ss_dssp EEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCS
T ss_pred EEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCC
Confidence 3555555554 23333 34445556677777 33468888889988877654 4555555553 356788999999988
Q ss_pred EEEEE----cCCCcEEEEeCCCCee
Q psy15995 286 HFASA----GFDGKVFLYDGASADL 306 (683)
Q Consensus 286 ~l~~~----~~dg~i~iw~~~~~~~ 306 (683)
.++.. ...++|++||+.+++.
T Consensus 420 ~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 420 HAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp CEEEEEEETTEEEEEEEEETTTTEE
T ss_pred EEEEEEcCCCCCCEEEEEECCCCcE
Confidence 65532 2347899999988873
No 210
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.61 E-value=4.4e-12 Score=119.27 Aligned_cols=275 Identities=8% Similarity=-0.028 Sum_probs=186.0
Q ss_pred CCeEEEeeCCCCCeEEEe-cCCeEEEEeCCCCcccc-cccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccc
Q psy15995 45 GQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAISD-IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 122 (683)
Q Consensus 45 ~~~~~~~~s~~~~~l~~~-~~~~i~v~~~~~~~~~~-~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~ 122 (683)
..+..++++++|+++++. .++.|.+||.. ++... .+..+...+.+++++++|++.++...++.|..+|.. ++. ..
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-~~ 96 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-TE 96 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EE
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-EE
Confidence 577889999999988877 46899999988 55433 233445679999999999988887777889999987 433 22
Q ss_pred cccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEE
Q psy15995 123 NEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVV 202 (683)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 202 (683)
+.... ....+..+++.++|+++++...++.|..+|.. ++.. ..........+..+++.++++. .+
T Consensus 97 ~~~~~------------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g~l-~v 161 (300)
T 2qc5_A 97 YPLPQ------------PDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSDNAL-WF 161 (300)
T ss_dssp EECSS------------TTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSSE-EE
T ss_pred ecCCC------------CCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECCCCCE-EE
Confidence 21110 01457788999999988888778899999987 5433 2223323467899999999984 44
Q ss_pred EecCCceEEEEEEccCCCceee-eecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeee-ccccccCeEEEEE
Q psy15995 203 VGEGRERFGHVFMSETGTSVGE-ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT-KQEHSRFVQAVRY 280 (683)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~-~~~~~~~v~~~~~ 280 (683)
+...... +..++. .++.... ...+...+..+++.+++.. .++....+.|.+|+. +++.... ...+...+.++++
T Consensus 162 ~~~~~~~-i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l-~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~ 237 (300)
T 2qc5_A 162 TENQNNS-IGRITN-TGKLEEYPLPTNAAAPVGITSGNDGAL-WFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITA 237 (300)
T ss_dssp EETTTTE-EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSE-EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred EecCCCe-EEEECC-CCcEEEeeCCCCCCCcceEEECCCCCE-EEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEE
Confidence 4432222 344444 3433221 2234557889999999863 555556678999997 4443332 3334567899999
Q ss_pred CCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEEC
Q psy15995 281 SPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDI 345 (683)
Q Consensus 281 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 345 (683)
+++|+..++...++.|..|+. +++.. .+..+.....+.++++.++++..++.. . .|..+|.
T Consensus 238 d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 238 GKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 999997776666789999997 45433 222222455688999999988555543 4 6666664
No 211
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.59 E-value=1.9e-12 Score=122.61 Aligned_cols=240 Identities=10% Similarity=0.040 Sum_probs=164.6
Q ss_pred CeEEEeeCCCCCeEEE--------ecCCeEEEEeCCCCccccccc----CcccceEEEEECCC-CcEEEEecCCCCEEEE
Q psy15995 46 QPIVLGGDPKGKNFLY--------TNGNSVIIRNIENPAISDIYT----EHSCAVNVAKYSPS-GFYIASGDISGKVRIW 112 (683)
Q Consensus 46 ~~~~~~~s~~~~~l~~--------~~~~~i~v~~~~~~~~~~~~~----~h~~~v~~~~~s~d-~~~las~~~dg~i~iw 112 (683)
.+..++|+++|+++++ ..++.|.+||..+++...... ++...+.+++++++ |+++++...+ .|.+|
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~-~l~~~ 97 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL-GLLVV 97 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT-EEEEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCC-CEEEE
Confidence 4567889999998888 467899999988887643222 36678999999999 8766655443 69999
Q ss_pred eCCCcccccc-cccccCCCCcccceeeeeecceeeeEeeccceEEEeecCC---------------ccEEEEecccccee
Q psy15995 113 DTVNKEHILK-NEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDIS---------------GKVRIWDTVNKEHI 176 (683)
Q Consensus 113 d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---------------~~i~iwd~~~~~~~ 176 (683)
|.. ++.... ..... + .....+..+++.++|+++++...+ +.|..||.. ++..
T Consensus 98 d~~-g~~~~~~~~~~~-~---------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~ 165 (314)
T 1pjx_A 98 QTD-GTFEEIAKKDSE-G---------RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI 165 (314)
T ss_dssp ETT-SCEEECCSBCTT-S---------CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE
T ss_pred eCC-CCEEEEEeccCC-C---------ccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE
Confidence 988 543221 11100 0 011457889999999888776655 567777765 4322
Q ss_pred eeccccccCCCeeEEEEc----CCCCeEEEEecCCceEEEEEEcc-CCC-----ceeeeecCC-cCeEEEEeecCCCeEE
Q psy15995 177 LKNEFHPIGGPIKDIAWS----PDNQRMVVVGEGRERFGHVFMSE-TGT-----SVGEISGQS-KPINSCDFKPSRPFRI 245 (683)
Q Consensus 177 ~~~~~~~~~~~i~~~~~s----~~~~~l~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~-~~v~~~~~~~~~~~~l 245 (683)
.. .........++|+ |+++.++++...... +.+++.+ .++ ....+..+. ..+..+++++++.. +
T Consensus 166 ~~---~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~-i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l-~ 240 (314)
T 1pjx_A 166 QV---DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKK-LWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNL-L 240 (314)
T ss_dssp EE---EEEESSEEEEEEEECTTSCEEEEEEEETTTTE-EEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCE-E
T ss_pred Ee---ccCCCCcceEEEecccCCCCCEEEEEECCCCe-EEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCE-E
Confidence 11 1122456889999 999877777644332 5566654 333 222334444 56788999999974 6
Q ss_pred EEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEE-EEcCCCcEEEEeCCC
Q psy15995 246 ITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFA-SAGFDGKVFLYDGAS 303 (683)
Q Consensus 246 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~ 303 (683)
++...++.|.+||..+++....+..+...+.+++++|+++.|+ +...++.|..|++..
T Consensus 241 v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 241 VANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 6666788999999887777666666667899999999999554 455567899999764
No 212
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.57 E-value=2.1e-12 Score=122.41 Aligned_cols=251 Identities=7% Similarity=-0.004 Sum_probs=166.1
Q ss_pred cccceEEEEECCCCcEEEE-------ecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeecc-ceE
Q psy15995 84 HSCAVNVAKYSPSGFYIAS-------GDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSI-GFY 155 (683)
Q Consensus 84 h~~~v~~~~~s~d~~~las-------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~ 155 (683)
.-....+++|+++|+++++ ...++.|.+||..+++... +.... .......+..++++++ |++
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~---------~~~~~~~~~~i~~~~~~g~l 85 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPE---------VNGYGGIPAGCQCDRDANQL 85 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCE---------ETTEECCEEEEEECSSSSEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEecc---------cCCCCCCCceEEEecCCCcE
Confidence 3345689999999988888 5678899999987775432 11100 0001145788999999 776
Q ss_pred EEeecCCccEEEEeccccceeee-cccc--ccCCCeeEEEEcCCCCeEEEEecCC-----------ceEEEEEEccCCCc
Q psy15995 156 IASGDISGKVRIWDTVNKEHILK-NEFH--PIGGPIKDIAWSPDNQRMVVVGEGR-----------ERFGHVFMSETGTS 221 (683)
Q Consensus 156 l~~~~~d~~i~iwd~~~~~~~~~-~~~~--~~~~~i~~~~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~ 221 (683)
+++... +.|.+||.. ++.... .... .....+.+++++++|+..++..... .....++.++....
T Consensus 86 ~v~~~~-~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 163 (314)
T 1pjx_A 86 FVADMR-LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ 163 (314)
T ss_dssp EEEETT-TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC
T ss_pred EEEECC-CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCC
Confidence 665543 478899988 654322 1111 1124588999999998766554321 00123444443233
Q ss_pred eeeeecCCcCeEEEEee----cCCCeEEEEeeCCCeEEEEcCC-CCc-----eeeeccccc-cCeEEEEECCCCCEEEEE
Q psy15995 222 VGEISGQSKPINSCDFK----PSRPFRIITGSEDNTIAVFEGP-PFK-----FKMTKQEHS-RFVQAVRYSPSGSHFASA 290 (683)
Q Consensus 222 ~~~~~~~~~~v~~~~~~----~~~~~~l~~~~~d~~i~iw~~~-~~~-----~~~~~~~~~-~~v~~~~~~~~~~~l~~~ 290 (683)
...+..+......++++ |+++.++++...++.|.+|+.. +++ ....+..+. ..+..++++++|+++++.
T Consensus 164 ~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~ 243 (314)
T 1pjx_A 164 MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN 243 (314)
T ss_dssp EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEE
Confidence 33333444557889999 9987545666678999999975 343 222333343 567889999999988877
Q ss_pred cCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEE-CCCcEEEEECCCC
Q psy15995 291 GFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS-GDKTCKLWDIETK 348 (683)
Q Consensus 291 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~ 348 (683)
..++.|.+||..+++....+.. +...+.+++++|+++.|++++ .++.|..|++...
T Consensus 244 ~~~~~i~~~d~~~g~~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 244 WGSSHIEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp ETTTEEEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred cCCCEEEEEcCCCCcEeEEEeC--CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 7788999999887776666654 557899999999999565554 4578999988753
No 213
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.56 E-value=4.7e-12 Score=118.28 Aligned_cols=233 Identities=9% Similarity=0.089 Sum_probs=161.7
Q ss_pred cccceEEEEECCC-CcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCC
Q psy15995 84 HSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDIS 162 (683)
Q Consensus 84 h~~~v~~~~~s~d-~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 162 (683)
+..--.+..|+|+ +.++++...++.|..||..+++.. .+.. ...+.+++++++|+++++. +
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~---------------~~~~~~i~~~~dG~l~v~~--~ 72 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTM---------------DAPVSSVALRQSGGYVATI--G 72 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEEC---------------SSCEEEEEEBTTSSEEEEE--T
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeC---------------CCceEEEEECCCCCEEEEE--C
Confidence 4444568899995 556666677889999999876431 1111 1457889999999966654 5
Q ss_pred ccEEEEeccccceeeecccc--ccCCCeeEEEEcCCCCeEEEEecCC-------ceEEEEEEccCCCceeeeecCCcCeE
Q psy15995 163 GKVRIWDTVNKEHILKNEFH--PIGGPIKDIAWSPDNQRMVVVGEGR-------ERFGHVFMSETGTSVGEISGQSKPIN 233 (683)
Q Consensus 163 ~~i~iwd~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~ 233 (683)
+.|.+||..+++........ .....+..++++|+|++.+...... .....++..+.......+..+....+
T Consensus 73 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pn 152 (297)
T 3g4e_A 73 TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISN 152 (297)
T ss_dssp TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEE
T ss_pred CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeecccccc
Confidence 68999999877643222211 1124578899999999666543221 11245666664433334444455678
Q ss_pred EEEeecCCCeEEEEeeCCCeEEEEcC--CCCce-----eeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCee
Q psy15995 234 SCDFKPSRPFRIITGSEDNTIAVFEG--PPFKF-----KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADL 306 (683)
Q Consensus 234 ~~~~~~~~~~~l~~~~~d~~i~iw~~--~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 306 (683)
.++|+|+++.++++.+.++.|.+|+. .++.. ...+..+...+..+++.++|++.++....+.|..||..+++.
T Consensus 153 gi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~ 232 (297)
T 3g4e_A 153 GLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKR 232 (297)
T ss_dssp EEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCE
T ss_pred ceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceE
Confidence 99999999876677777899999986 44432 222333445688999999998777777778899999988998
Q ss_pred EEeccCCccccCeEEEEEc-cCCCEEEEEEC
Q psy15995 307 VSELGNPAHKGGVYAVAWK-PDGTQLLTASG 336 (683)
Q Consensus 307 ~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~ 336 (683)
+..+.. +...+++++|. |+++.|++++.
T Consensus 233 ~~~i~~--p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 233 LQTVKL--PVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEEC--SSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEEEC--CCCCceEEEEeCCCCCEEEEEcC
Confidence 888865 55679999998 88887776664
No 214
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.54 E-value=2.3e-08 Score=102.21 Aligned_cols=525 Identities=12% Similarity=-0.001 Sum_probs=276.7
Q ss_pred CeEEEecCCeEEEEeCCCCc-ccccccCcccceEEEEECCCCcEEEEec-CCCCEEEEeCCCcccccccccccCCCCccc
Q psy15995 57 KNFLYTNGNSVIIRNIENPA-ISDIYTEHSCAVNVAKYSPSGFYIASGD-ISGKVRIWDTVNKEHILKNEFHPIGGPIKD 134 (683)
Q Consensus 57 ~~l~~~~~~~i~v~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~las~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 134 (683)
.+|.++..+.|+..|+.... ....+...-.....++|++.+..|..++ ..+.|..+++........+-..
T Consensus 10 ~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~-------- 81 (619)
T 3s94_A 10 PLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-------- 81 (619)
T ss_dssp CCEEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECS--------
T ss_pred ceEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeC--------
Confidence 46778888999999998653 2222333455678999999666665544 4577888888755211111000
Q ss_pred ceeeeeecceeeeEeeccc-eEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEE
Q psy15995 135 IGTLLSLTSIRNILVLSIG-FYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHV 213 (683)
Q Consensus 135 ~~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~ 213 (683)
.......+++.+.+ +..++-...+.|.+.++........ ..........|++.|.+..|+.+..+....+..
T Consensus 82 -----~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l--~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r 154 (619)
T 3s94_A 82 -----GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL--FWQELDQPRAIALDPSSGFMYWTDWGEVPKIER 154 (619)
T ss_dssp -----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE--ECSSCSCCCCEEEETTTTEEEEEECSSSCEEEE
T ss_pred -----CCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEE--EeCCCCCCceEEEecCCCeEEEeccCCCCEEEE
Confidence 11456788999854 4555556678999999876532211 112235678999999877777776443333344
Q ss_pred EEccCCCceeee-ecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcC
Q psy15995 214 FMSETGTSVGEI-SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGF 292 (683)
Q Consensus 214 ~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 292 (683)
..++ |.....+ ...-...+.+++++++..+.++-...+.|...+...........+.......+++..+ ..+.+-..
T Consensus 155 ~~~d-G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~ 232 (619)
T 3s94_A 155 AGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWS 232 (619)
T ss_dssp EETT-SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTT
T ss_pred EECC-CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCC
Confidence 4443 3333332 3345568899999987765666667788999998654433332222223346677655 34444445
Q ss_pred CCcEEEEeCCCCeeEEeccCCccccCeEEEEEc-cCCCEEE--EE----ECCCcEEEEECCCCceeeEEEecCcceeceE
Q psy15995 293 DGKVFLYDGASADLVSELGNPAHKGGVYAVAWK-PDGTQLL--TA----SGDKTCKLWDIETKSVVSEFIMGNQVEDQQV 365 (683)
Q Consensus 293 dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~--~~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (683)
.+.|...|..+++....+.. .......+++. |..+--. -| +.-..+.+-.............+........
T Consensus 233 ~~~V~~~d~~tg~~~~~i~~--~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~ 310 (619)
T 3s94_A 233 THSILACNKYTGEGLREIHS--DIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGK 310 (619)
T ss_dssp TCSEEEEESSSCCCCEECCS--CCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSS
T ss_pred CCEEEEEECCCCcccEEEec--CCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCc
Confidence 67899999888876555532 22223344332 2110000 00 0001122221111000000000000000000
Q ss_pred EEEecCCEEEEEecCCcEEEEecCCCCcceeeee-eccccEEEEEEeCCCCEEEEEe-CCCcEEEEcCCCCCcceeccCC
Q psy15995 366 SCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIK-GHNKPITALALSPDRGTVFTGS-HDGFITRWNAKTGENDRVQGAG 443 (683)
Q Consensus 366 ~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~~ 443 (683)
.|....+.++..+..+.|+..++.........+. ..-..+.+++|.+.+..|+.+. ..+.|..+++......... ..
T Consensus 311 ~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~-~~ 389 (619)
T 3s94_A 311 TCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV-TA 389 (619)
T ss_dssp CBCSSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CS
T ss_pred ccCCCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEE-EC
Confidence 1111123334444566788778765432211111 1234578899999666666554 5778999988765443333 22
Q ss_pred CCcceeEEEEe--CC-eEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecC
Q psy15995 444 HGNQINGMKAT--GE-LLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPI 520 (683)
Q Consensus 444 ~~~~v~~~~~~--~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (683)
.......++++ ++ .+++-...+.|.+.++...... ......
T Consensus 390 ~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~------------------------------------~l~~~~ 433 (619)
T 3s94_A 390 QIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRK------------------------------------ILISED 433 (619)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE------------------------------------EEECTT
T ss_pred CCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEE------------------------------------EEEECC
Confidence 23445566666 44 4445455678888887654210 000011
Q ss_pred CCCCcEEEEccCCCEEEEEcC--CCcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEe-CCCeEEEEECCCCc
Q psy15995 521 DYEPSSISLDHEHGLVAVGGA--DSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASD-AHRKVVLYRVPDFE 597 (683)
Q Consensus 521 ~~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~~~~~~~ 597 (683)
-..+..+++.|....|..... .+.|...+++..... ......-.....+++++++..|..+. ..+.|..+++....
T Consensus 434 l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~-~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~ 512 (619)
T 3s94_A 434 LEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV-VLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG 512 (619)
T ss_dssp CCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred CCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE-EEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc
Confidence 235788999997666655542 367777777654432 12222345678999999777777765 45678899986543
Q ss_pred cccccceeeecccEEEEEecCCCCeEEEeecCCcEEEEeCCCCc
Q psy15995 598 LAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPA 641 (683)
Q Consensus 598 ~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~~ 641 (683)
...... . .-....+|+...+ .+..+-...+.|...+..++.
T Consensus 513 ~~~~~~-~-~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 513 RRVLVE-D-KIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp CEEEEE-C-CCCSSCCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred eEEEec-c-CCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence 321111 0 1122334555433 333343345567777766663
No 215
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.54 E-value=1.3e-12 Score=137.58 Aligned_cols=247 Identities=12% Similarity=0.043 Sum_probs=166.2
Q ss_pred CcccceEEEEECCCCcEEEE-----ecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEE
Q psy15995 83 EHSCAVNVAKYSPSGFYIAS-----GDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIA 157 (683)
Q Consensus 83 ~h~~~v~~~~~s~d~~~las-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 157 (683)
+|...+..++|||||++||- |+...+|++||+.+++.+.. .... .....++|+ ||+.|+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~--------------~k~~~~~Ws-Dg~~l~ 189 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKD--------------VKFSGISWL-GNEGFF 189 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEE--------------EESCCCEEE-TTTEEE
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCC--------------ceeccEEEe-CCCEEE
Confidence 46678999999999999984 33335699999999875432 1110 123578999 999998
Q ss_pred eecCCc-------------cEEEEeccccce--eeeccccc-cCCCeeEEEEcCCCCeEEEEecCC--ceEEEEEEccCC
Q psy15995 158 SGDISG-------------KVRIWDTVNKEH--ILKNEFHP-IGGPIKDIAWSPDNQRMVVVGEGR--ERFGHVFMSETG 219 (683)
Q Consensus 158 ~~~~d~-------------~i~iwd~~~~~~--~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~--~~~~~~~~~~~~ 219 (683)
.++.+. .|++|++.++.. ........ +.....++.|+|||++|++..... ...+.+++.+.+
T Consensus 190 y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~ 269 (693)
T 3iuj_A 190 YSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQE 269 (693)
T ss_dssp EEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTST
T ss_pred EEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCC
Confidence 887774 399999987643 22222232 345578899999999987766432 224566666555
Q ss_pred C-ceeeeecCCcCeEEEEeecCCCeEEEEeeCC---CeEEEEcCCCCce--eeeccccccCeEEEEECCCCCEEEEEcCC
Q psy15995 220 T-SVGEISGQSKPINSCDFKPSRPFRIITGSED---NTIAVFEGPPFKF--KMTKQEHSRFVQAVRYSPSGSHFASAGFD 293 (683)
Q Consensus 220 ~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 293 (683)
. ....+..+....... +++++..+++....+ +.|..+++.++.. ...+..|...+. .|+++++.|+....+
T Consensus 270 ~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~ 346 (693)
T 3iuj_A 270 NAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMV 346 (693)
T ss_dssp TCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEE
T ss_pred CCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEE
Confidence 3 455667776666665 666666545555443 6789999877654 234455655555 899999988766554
Q ss_pred C---cEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECC----CcEEEEECCCCce
Q psy15995 294 G---KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD----KTCKLWDIETKSV 350 (683)
Q Consensus 294 g---~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~ 350 (683)
+ .|++|++..+. ...+..+ ..+.+..+.++++++.++....+ +.+..||+.+++.
T Consensus 347 ~g~~~l~~~d~~g~~-~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 347 DATARVEQFDYEGKR-VREVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp TTEEEEEEECTTSCE-EEEECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred CCeeEEEEEECCCCe-eEEeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 3 68999987544 4444332 34567778888888877666544 7899999987754
No 216
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.51 E-value=6.2e-13 Score=125.45 Aligned_cols=265 Identities=11% Similarity=-0.023 Sum_probs=168.3
Q ss_pred eEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEec----------CCCCEEEEeCCCcccccccccccCCCCcccc
Q psy15995 66 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD----------ISGKVRIWDTVNKEHILKNEFHPIGGPIKDI 135 (683)
Q Consensus 66 ~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 135 (683)
.|.++|..+++.+.++.....+ .+++||||++++++. .++.|.+||+.+++.+.++........
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~---- 120 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF---- 120 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC----
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccc----
Confidence 8889999999999888755556 799999999998875 367899999999998888765410000
Q ss_pred eeeeeecceeeeEeeccceEEEeecC--CccEEE--EeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEE
Q psy15995 136 GTLLSLTSIRNILVLSIGFYIASGDI--SGKVRI--WDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFG 211 (683)
Q Consensus 136 ~~~~~~~~i~~~~~s~~~~~l~~~~~--d~~i~i--wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 211 (683)
........++++|||++|+++.. +..+.+ +|+.+ +...... +. ..+.|+++..+.+...... .
T Consensus 121 ---~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~---~~---~~~~p~g~~~~~~~~~dg~-~ 187 (368)
T 1mda_H 121 ---SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA---SC---FHIHPGAAATHYLGSCPAS-L 187 (368)
T ss_dssp ---CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS---SC---CCCEEEETTEEECCCCTTS-C
T ss_pred ---ccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC---Cc---eEEccCCCeEEEEEcCCCC-E
Confidence 00024568899999999998864 467888 99977 2222211 11 1122333333222211111 1
Q ss_pred EEEEccC-----CCce----eeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCc--eeeeccc----------
Q psy15995 212 HVFMSET-----GTSV----GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK--FKMTKQE---------- 270 (683)
Q Consensus 212 ~~~~~~~-----~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~---------- 270 (683)
.+.+.++ ++.. ..+.-...+. . .+++.. ++..+. +.+.+.|..... ....+..
T Consensus 188 ~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~-~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~ 261 (368)
T 1mda_H 188 AASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGM-LVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNF 261 (368)
T ss_dssp EEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTE-EEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTE
T ss_pred EEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCE-EEEEcC-CEEEEEECCCCcceEEEEEEecccccccccc
Confidence 2233332 2211 1111122333 3 666654 555555 899999976532 2222210
Q ss_pred cccCeEEEEECCCCCEEEEEcC---------CCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCE-EEEEE-CCCc
Q psy15995 271 HSRFVQAVRYSPSGSHFASAGF---------DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQ-LLTAS-GDKT 339 (683)
Q Consensus 271 ~~~~v~~~~~~~~~~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~-~dg~ 339 (683)
.......++++|+++.++++.. ++.+.++|+.+++.+..+.. ......++|+||+++ +++.. .++.
T Consensus 262 ~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v---g~~p~gi~~s~Dg~~l~va~~~~~~~ 338 (368)
T 1mda_H 262 RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN---GHDSDAIIAAQDGASDNYANSAGTEV 338 (368)
T ss_dssp EECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE---EEEECEEEECCSSSCEEEEEETTTTE
T ss_pred ccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC---CCCcceEEECCCCCEEEEEccCCCCe
Confidence 1111222689999998876543 23567999999999988864 336889999999984 55556 5899
Q ss_pred EEEEECCCCceeeEEEecC
Q psy15995 340 CKLWDIETKSVVSEFIMGN 358 (683)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~ 358 (683)
|.++|+.+++.+.++..+.
T Consensus 339 VsVID~~t~kvv~~I~vg~ 357 (368)
T 1mda_H 339 LDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp EEEEESSSCEEEEECCCCS
T ss_pred EEEEECCCCcEEEEEECCC
Confidence 9999999999988775443
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.51 E-value=2.2e-11 Score=118.50 Aligned_cols=240 Identities=10% Similarity=-0.027 Sum_probs=162.7
Q ss_pred cceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCc--
Q psy15995 86 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISG-- 163 (683)
Q Consensus 86 ~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~-- 163 (683)
.....++|+++|+++++...++.|++||..++......... .... ++++++++.|+++..++
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~---------------~~~~-ia~~~~g~~l~~~d~~~~~ 194 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF---------------KGGK-PAVTKDKQRVYSIGWEGTH 194 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC---------------CBCB-CEECTTSSEEEEEBSSTTC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC---------------CCCc-eeEecCCCcEEEEecCCCc
Confidence 46889999999998888777889999999877544322211 2233 89999999988888766
Q ss_pred cEEEEeccccceeeec-cccc-cCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceee----eecCCcCe--EEE
Q psy15995 164 KVRIWDTVNKEHILKN-EFHP-IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE----ISGQSKPI--NSC 235 (683)
Q Consensus 164 ~i~iwd~~~~~~~~~~-~~~~-~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v--~~~ 235 (683)
.|.+++...+...... .... ....+.+++++|++..|+++.. ...+..++.+.+..... ..++...- ..+
T Consensus 195 ~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~--~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~i 272 (409)
T 3hrp_A 195 TVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS--NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYL 272 (409)
T ss_dssp EEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT--TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEE
T ss_pred eEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC--CCcEEEEECCCCCEEEEecccccCCCCCCccccE
Confidence 7888888765432221 1111 3466789999996666666443 33456666665543222 22222222 399
Q ss_pred EeecCCCeEEEEeeCCCeEEEEcCCCCceeeecccc---------------ccCeEEEEECCCCCEEEEEc-CCCcEEEE
Q psy15995 236 DFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH---------------SRFVQAVRYSPSGSHFASAG-FDGKVFLY 299 (683)
Q Consensus 236 ~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~~~~-~dg~i~iw 299 (683)
+|+|++..++++-..++.|+.|+.... ...+.++ -.....++++++|+++++-. .++.|+.|
T Consensus 273 a~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~ 350 (409)
T 3hrp_A 273 IYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKL 350 (409)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEE
T ss_pred EEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEE
Confidence 999976656777778899999986543 2222222 24578999999999777777 78999999
Q ss_pred eCCCCeeEEeccCC------------ccccCeEEEEEccCCCEEEEEECCCcEEEEEC
Q psy15995 300 DGASADLVSELGNP------------AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDI 345 (683)
Q Consensus 300 ~~~~~~~~~~~~~~------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 345 (683)
+..++......... ..-.....+++++++.++++-..++.|+.+++
T Consensus 351 ~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 351 DILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred ECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 98777654333210 01246889999999877777777788887765
No 218
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.51 E-value=1.4e-11 Score=119.87 Aligned_cols=241 Identities=7% Similarity=0.008 Sum_probs=159.6
Q ss_pred CCCeEEEeeCCCCCeEEEec-CCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCC--CEEEEeCCCcccc
Q psy15995 44 RGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISG--KVRIWDTVNKEHI 120 (683)
Q Consensus 44 ~~~~~~~~~s~~~~~l~~~~-~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg--~i~iwd~~~~~~~ 120 (683)
-..+..++++|+|+++++.. ++.|++||.++++......... ... ++|+|++++|++++.++ .|.+|+..++...
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 35788999999999766664 5799999999887765554433 333 99999999998888766 6888887655432
Q ss_pred cccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeecc--ccccCCCe-e-EEEEcCC
Q psy15995 121 LKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNE--FHPIGGPI-K-DIAWSPD 196 (683)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~i-~-~~~~s~~ 196 (683)
..+..... .....+..++++|++..|..+..++.|+.||..++....... .....+.- . .++|+|+
T Consensus 208 ~~~g~~~~----------~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~ 277 (409)
T 3hrp_A 208 TRIGQLGS----------TFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFV 277 (409)
T ss_dssp EEEEECCT----------TSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETT
T ss_pred EEeeeccc----------hhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCC
Confidence 22200000 011456789999944444446778899999998765322200 11111222 3 9999997
Q ss_pred CCeEEEEecCCceEEEEEEccCCCceeeeecCC---------------cCeEEEEeecCCCeEEEEee-CCCeEEEEcCC
Q psy15995 197 NQRMVVVGEGRERFGHVFMSETGTSVGEISGQS---------------KPINSCDFKPSRPFRIITGS-EDNTIAVFEGP 260 (683)
Q Consensus 197 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~~l~~~~-~d~~i~iw~~~ 260 (683)
+..|+++...... +..++.+ +. ...+.++. .....++++|++. ++++-. .++.|+.|+..
T Consensus 278 ~g~lyv~d~~~~~-I~~~~~~-g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~ 353 (409)
T 3hrp_A 278 DSNFYMSDQNLSS-VYKITPD-GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDIL 353 (409)
T ss_dssp TTEEEEEETTTTE-EEEECTT-CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETT
T ss_pred CCEEEEEeCCCCE-EEEEecC-CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECC
Confidence 7777776655432 3444333 22 33333332 3578999999998 477777 88999999977
Q ss_pred CCceeeecccc---------------ccCeEEEEECCCCCEEEEEcCCCcEEEEeC
Q psy15995 261 PFKFKMTKQEH---------------SRFVQAVRYSPSGSHFASAGFDGKVFLYDG 301 (683)
Q Consensus 261 ~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 301 (683)
+++.. .+.++ -.....+++++++.++++-..++.|+.+++
T Consensus 354 ~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 354 DGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 77643 33332 245889999999887777777888887764
No 219
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.51 E-value=1.1e-11 Score=128.90 Aligned_cols=309 Identities=12% Similarity=0.080 Sum_probs=205.1
Q ss_pred CCCeEEEecCCeEEEEeCCCCcccccccCcccc-----------eEEEEECCCCcEEEEecCCCCEEEEeCCCccccccc
Q psy15995 55 KGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA-----------VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN 123 (683)
Q Consensus 55 ~~~~l~~~~~~~i~v~~~~~~~~~~~~~~h~~~-----------v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~ 123 (683)
++..++.+.++.|+-+|.++++.+-.+...... -..+++ ++..|+.++.|+.|..+|..+|+.+.++
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 444555556688999999998876655432210 012222 4567888889999999999999988777
Q ss_pred ccccCCCCcccceeeeeecceeeeEeeccceEEEeec-----CCccEEEEeccccceeeeccccccC-------------
Q psy15995 124 EFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGD-----ISGKVRIWDTVNKEHILKNEFHPIG------------- 185 (683)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~------------- 185 (683)
......... ..+..--...++..++..+ .++.|+.+|..+|+.+.........
T Consensus 155 ~~~~~~~~~---------~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g 225 (677)
T 1kb0_A 155 NTFEGQKGS---------LTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRA 225 (677)
T ss_dssp ETTTTCCSS---------CBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHH
T ss_pred cCCcCcCcC---------cccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccc
Confidence 654100000 0111111112344433332 2799999999999988766543211
Q ss_pred -----------------CCeeEEEEcCCCCeEEEEecCCc-----------------eEEEEEEccCCCceeeeec--CC
Q psy15995 186 -----------------GPIKDIAWSPDNQRMVVVGEGRE-----------------RFGHVFMSETGTSVGEISG--QS 229 (683)
Q Consensus 186 -----------------~~i~~~~~s~~~~~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~--~~ 229 (683)
.....++++|++..+++...+.. ..+..++.++|+.+..+.. |.
T Consensus 226 ~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d 305 (677)
T 1kb0_A 226 ARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGD 305 (677)
T ss_dssp HTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTC
T ss_pred cccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCc
Confidence 11235788999888887765431 1366777788988877654 21
Q ss_pred -------cCeEEEEeecCCC--eEEEEeeCCCeEEEEcCCCCceeeeccccc-----------cCe--------------
Q psy15995 230 -------KPINSCDFKPSRP--FRIITGSEDNTIAVFEGPPFKFKMTKQEHS-----------RFV-------------- 275 (683)
Q Consensus 230 -------~~v~~~~~~~~~~--~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-----------~~v-------------- 275 (683)
.....+....+|+ ..++.++.+|.++++|..+++.+....... ..+
T Consensus 306 ~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 385 (677)
T 1kb0_A 306 NWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDA 385 (677)
T ss_dssp CSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEEC
T ss_pred ccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEE
Confidence 1222333344662 358999999999999999999876553211 011
Q ss_pred ----------EEEEECCCCCEEEEEcC-------------------------------------------CCcEEEEeCC
Q psy15995 276 ----------QAVRYSPSGSHFASAGF-------------------------------------------DGKVFLYDGA 302 (683)
Q Consensus 276 ----------~~~~~~~~~~~l~~~~~-------------------------------------------dg~i~iw~~~ 302 (683)
..++++|++.++++... .|.|..||+.
T Consensus 386 ~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~ 465 (677)
T 1kb0_A 386 VPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPV 465 (677)
T ss_dssp SSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETT
T ss_pred CcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCC
Confidence 14688998888877543 2789999999
Q ss_pred CCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEE
Q psy15995 303 SADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTV 377 (683)
Q Consensus 303 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 377 (683)
+++.+..+. +..++....+..++..++.++.||.+++||.++++.+.++..........+.+..+++.+++.
T Consensus 466 tG~~~W~~~---~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 466 AQKAAWSVE---HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp TTEEEEEEE---ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred CCcEEeecC---CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence 999888875 334455555667788899999999999999999999999988877777777777777655443
No 220
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.48 E-value=1.4e-11 Score=128.44 Aligned_cols=308 Identities=13% Similarity=0.081 Sum_probs=200.2
Q ss_pred CCCeEEEecCCeEEEEeCCCCcccccccCcccc----------e-EEEEECCCCcEEEEecCCCCEEEEeCCCccccccc
Q psy15995 55 KGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA----------V-NVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN 123 (683)
Q Consensus 55 ~~~~l~~~~~~~i~v~~~~~~~~~~~~~~h~~~----------v-~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~ 123 (683)
++..++.+.++.|+-+|.++|+.+-.+..+... + ..+++ ++..|+.++.|+.|..+|..+|+.+.+.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 444555556778999999999887665433211 0 11122 4557888889999999999999988776
Q ss_pred ccccCCCCcccceeeeeecceeeeEeeccceEEEeec-----CCccEEEEeccccceeeecccccc--------------
Q psy15995 124 EFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGD-----ISGKVRIWDTVNKEHILKNEFHPI-------------- 184 (683)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~-------------- 184 (683)
......... ..+..--...++..++..+ .+|.|..||..+|+.+........
T Consensus 148 ~~~~~~~~~---------~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~ 218 (689)
T 1yiq_A 148 DTRADHKRS---------YTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIA 218 (689)
T ss_dssp ECCSCTTSC---------CBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHH
T ss_pred cCcCCCCCC---------ccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccc
Confidence 553000000 0011000112454444332 378999999999998776543110
Q ss_pred ---------------CCCeeEEEEcCCCCeEEEEecCCc-----------------eEEEEEEccCCCceeeeecC--C-
Q psy15995 185 ---------------GGPIKDIAWSPDNQRMVVVGEGRE-----------------RFGHVFMSETGTSVGEISGQ--S- 229 (683)
Q Consensus 185 ---------------~~~i~~~~~s~~~~~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~--~- 229 (683)
......++++|+...+++...+.. ..+..++.++|+.+..+... .
T Consensus 219 ~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~ 298 (689)
T 1yiq_A 219 AKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDA 298 (689)
T ss_dssp HTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCC
T ss_pred ccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccc
Confidence 011236789998888888765531 12677888899988877642 2
Q ss_pred ------cCeEEEEeecCCC--eEEEEeeCCCeEEEEcCCCCceeeeccccc----------------------------c
Q psy15995 230 ------KPINSCDFKPSRP--FRIITGSEDNTIAVFEGPPFKFKMTKQEHS----------------------------R 273 (683)
Q Consensus 230 ------~~v~~~~~~~~~~--~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~----------------------------~ 273 (683)
..........++. ..++.++.+|.++++|..+++.+....... .
T Consensus 299 wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~ 378 (689)
T 1yiq_A 299 WDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKR 378 (689)
T ss_dssp SCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSC
T ss_pred ccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCe
Confidence 1222222223443 248889999999999999998874321100 0
Q ss_pred -----------CeEEEEECCCCCEEEEEcC---------------------------------------------CCcEE
Q psy15995 274 -----------FVQAVRYSPSGSHFASAGF---------------------------------------------DGKVF 297 (683)
Q Consensus 274 -----------~v~~~~~~~~~~~l~~~~~---------------------------------------------dg~i~ 297 (683)
.-..++++|+...+++... +|.|.
T Consensus 379 ~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~ 458 (689)
T 1yiq_A 379 NLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLI 458 (689)
T ss_dssp EEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEE
T ss_pred eEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEE
Confidence 0112688888887776522 37799
Q ss_pred EEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEE
Q psy15995 298 LYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLT 376 (683)
Q Consensus 298 iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 376 (683)
.||+.+++.+..... ..+...-.+...+.+++.++.||.++.||.++++.+.++..........+.+..+++..++
T Consensus 459 A~D~~tG~~~W~~~~---~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 459 AWDPVKQQAAWEVPY---VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp EEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEECCCCCeEeEccC---CCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 999999999888753 2333334556678899999999999999999999999998887776667777777764443
No 221
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.48 E-value=2.2e-11 Score=126.57 Aligned_cols=311 Identities=12% Similarity=0.086 Sum_probs=194.2
Q ss_pred CCEEEEEcCCCcEEEEeCCCCeeEEeccCCcccc---------CeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEE
Q psy15995 284 GSHFASAGFDGKVFLYDGASADLVSELGNPAHKG---------GVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEF 354 (683)
Q Consensus 284 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 354 (683)
+..+++++.++.|..+|..+|+.+..+....... ....+++ ++..+++++.|+.|..+|..+++.+.++
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 4467777778999999999999988876432110 0112333 3667888899999999999999999888
Q ss_pred Eec-Ccce--eceEEEEecCCEEEEEec------CCcEEEEecCCCCcceeeeee-------------------------
Q psy15995 355 IMG-NQVE--DQQVSCLWQGDYLLTVSL------SGFISYLDVNNPSTPIRVIKG------------------------- 400 (683)
Q Consensus 355 ~~~-~~~~--~~~~~~~~~~~~l~~~~~------~g~i~~~~~~~~~~~~~~~~~------------------------- 400 (683)
... .... .........+..++++.. ++.++.+|..++...-+....
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~ 234 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK 234 (677)
T ss_dssp ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred cCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCc
Confidence 765 1100 011111124566666664 688999999875543222110
Q ss_pred ------ccccEEEEEEeCCCCEEEEEeCCCc-------------------EEEEcCCCCCcceeccCCCCcceeEEEEeC
Q psy15995 401 ------HNKPITALALSPDRGTVFTGSHDGF-------------------ITRWNAKTGENDRVQGAGHGNQINGMKATG 455 (683)
Q Consensus 401 ------~~~~v~~~~~~~~~~~l~~~~~dg~-------------------i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~ 455 (683)
.......++++|++..++.+..++. |..+|..+++..-.+...+..
T Consensus 235 ~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d--------- 305 (677)
T 1kb0_A 235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGD--------- 305 (677)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTC---------
T ss_pred eeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCc---------
Confidence 1111235678888888888876653 444444443332222110000
Q ss_pred CeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCC--
Q psy15995 456 ELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEH-- 533 (683)
Q Consensus 456 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 533 (683)
.||. .....+..+....+|
T Consensus 306 -------------~wd~----------------------------------------------~~~~~p~l~~~~~dG~~ 326 (677)
T 1kb0_A 306 -------------NWDY----------------------------------------------TSTQPMILADIKIAGKP 326 (677)
T ss_dssp -------------CSCC----------------------------------------------CCCSCCEEEEEEETTEE
T ss_pred -------------cccc----------------------------------------------ccCCCcEEEecccCCcE
Confidence 0000 001122223333466
Q ss_pred -CEEEEEcCCCcEEEEEcCCCccCcceeecCCc----------Ce------------------------eEEEECCCCCE
Q psy15995 534 -GLVAVGGADSKVHIYELNNKSLSPKAELDHLG----------PV------------------------TDCSFSPSNEY 578 (683)
Q Consensus 534 -~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----------~v------------------------~~~~~s~~~~~ 578 (683)
+.++.++.+|.++++|..+++++......... ++ ..++|+|++.+
T Consensus 327 ~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~ 406 (677)
T 1kb0_A 327 RKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGL 406 (677)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTE
T ss_pred eeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCE
Confidence 67888999999999999998876443322100 00 25688998888
Q ss_pred EEEEeC-------------------------------------------CCeEEEEECCCCccccccceeeecccEEEEE
Q psy15995 579 LVASDA-------------------------------------------HRKVVLYRVPDFELAHNKEWGFHSAKVNCVA 615 (683)
Q Consensus 579 l~~~~~-------------------------------------------d~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~ 615 (683)
+++... .+.|..||+.+++.+-... +..++....
T Consensus 407 ~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~---~~~~~~~g~ 483 (677)
T 1kb0_A 407 VYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE---HVSPWNGGT 483 (677)
T ss_dssp EEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE---ESSSCCCCE
T ss_pred EEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC---CCCCCcCcc
Confidence 877543 2789999999999876554 444555666
Q ss_pred ecCCCCeEEEeecCCcEEEEeCCCCceeeEeecCCCCCCeeEEEEc-cCCeEEE
Q psy15995 616 WSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWL-DNDLLVS 668 (683)
Q Consensus 616 ~s~d~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~l~s 668 (683)
++.++.+++.++.||.+++||..+++.+..+...+ .....-+.|. +++.+++
T Consensus 484 ~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~-~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 484 LTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT-GVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS-CCCSCCEEEEETTEEEEE
T ss_pred eEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC-CcccCCEEEEeCCEEEEE
Confidence 77788899999999999999999999998886533 2333456665 6654443
No 222
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.47 E-value=8.3e-12 Score=131.37 Aligned_cols=243 Identities=6% Similarity=-0.020 Sum_probs=158.6
Q ss_pred CCeEEEeeCCCCCeEEEec--C----CeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCC-----------
Q psy15995 45 GQPIVLGGDPKGKNFLYTN--G----NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISG----------- 107 (683)
Q Consensus 45 ~~~~~~~~s~~~~~l~~~~--~----~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg----------- 107 (683)
..+..++|||||++||++. + ..|++||+++++.+.. ..+......++|+ ||+.|+.++.+.
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~ 206 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTD 206 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC-------CC
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCcccccccccCC
Confidence 3466778999999999873 2 3799999999986542 1111123678999 999998887664
Q ss_pred --CEEEEeCCCccc----cccccc-ccCCCCcccceeeeeecceeeeEeeccceEEEeec----CCccEEEEecccccee
Q psy15995 108 --KVRIWDTVNKEH----ILKNEF-HPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGD----ISGKVRIWDTVNKEHI 176 (683)
Q Consensus 108 --~i~iwd~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~----~d~~i~iwd~~~~~~~ 176 (683)
.|++|++.++.. +..... ++ .....+.++|||++|+... .++.|.++|+.++...
T Consensus 207 ~~~v~~~~lgt~~~~~~~v~~~~~~~~--------------~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~ 272 (693)
T 3iuj_A 207 QHKVYFHRLGTAQEDDRLVFGAIPAQH--------------HRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP 272 (693)
T ss_dssp CCEEEEEETTSCGGGCEEEESCSGGGC--------------CSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC
T ss_pred CcEEEEEECCCCcccceEEEecCCCCC--------------eEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc
Confidence 399999987642 221111 11 2356788999999886543 2358999999876421
Q ss_pred eeccccccCCCeeEEEEcCCCCeEEEEecCC--ceEEEEEEccCCCc--eeeeecCCcCeEEEEeecCCCeEEEEeeCCC
Q psy15995 177 LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR--ERFGHVFMSETGTS--VGEISGQSKPINSCDFKPSRPFRIITGSEDN 252 (683)
Q Consensus 177 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 252 (683)
.. .+..+....... +++++..+++.+... ...+..++.+++.. ...+..|...+. .|+++++.++++...++
T Consensus 273 ~~-~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g 348 (693)
T 3iuj_A 273 LL-TVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDA 348 (693)
T ss_dssp CE-EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETT
T ss_pred eE-EEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECC
Confidence 11 122223344444 778888887776543 23355566666543 345666766665 89999987555555565
Q ss_pred --eEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcCC----CcEEEEeCCCCeeE
Q psy15995 253 --TIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD----GKVFLYDGASADLV 307 (683)
Q Consensus 253 --~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iw~~~~~~~~ 307 (683)
.|++|+...+............+..+.++++++.++....+ +.++.||+.+++..
T Consensus 349 ~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 349 TARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred eeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 68889887554333222344567788888888866655444 78999998877643
No 223
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.46 E-value=1.9e-10 Score=111.81 Aligned_cols=305 Identities=11% Similarity=0.080 Sum_probs=194.1
Q ss_pred cceEEEeecCCccEEEEeccccceeeecccccc-------CCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceee
Q psy15995 152 IGFYIASGDISGKVRIWDTVNKEHILKNEFHPI-------GGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE 224 (683)
Q Consensus 152 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 224 (683)
++..+.+++.++.|..+|..+++.+........ ...+.+. ...++..+++++.+. .+..++.++|+.+..
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g--~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKA--QVYALNTSDGTVAWQ 128 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTS--EEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCC--EEEEEECCCCCEEEE
Confidence 355677778889999999999998777665321 1222222 222345666665543 267777788888776
Q ss_pred eecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCe-----EEEEECCCCCEEEEEcCCCcEEEE
Q psy15995 225 ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFV-----QAVRYSPSGSHFASAGFDGKVFLY 299 (683)
Q Consensus 225 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iw 299 (683)
.............. ++ .++.++.++.+..+|..+++.+.......... ...... +..+++++.++.+..+
T Consensus 129 ~~~~~~~~~~p~~~-~~--~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~ 203 (376)
T 3q7m_A 129 TKVAGEALSRPVVS-DG--LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAV 203 (376)
T ss_dssp EECSSCCCSCCEEE-TT--EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEE
T ss_pred EeCCCceEcCCEEE-CC--EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEE
Confidence 66543322222332 33 48888899999999999998877665332111 111222 3467788889999999
Q ss_pred eCCCCeeEEeccCCccccC-----eEEEEEcc--CCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCC
Q psy15995 300 DGASADLVSELGNPAHKGG-----VYAVAWKP--DGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGD 372 (683)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~-----i~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (683)
|..+++.+........... +..+.-.| .+..++.++.++.+..+|..+++.+....... .......+.
T Consensus 204 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-----~~~~~~~~~ 278 (376)
T 3q7m_A 204 LMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS-----VNDFIVDGN 278 (376)
T ss_dssp ETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC-----EEEEEEETT
T ss_pred ECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC-----CCCceEECC
Confidence 9999988776653211100 00011111 25678888889999999999998876654322 123344688
Q ss_pred EEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEE
Q psy15995 373 YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMK 452 (683)
Q Consensus 373 ~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~ 452 (683)
.+++++.++.+..+|..++......-......+..... .+..|+.++.+|.|..+|..+++.................
T Consensus 279 ~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~ 356 (376)
T 3q7m_A 279 RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPV 356 (376)
T ss_dssp EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCE
T ss_pred EEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCE
Confidence 89999999999999998755432221111222222333 2468888999999999999999877655432222333344
Q ss_pred EeCCeEEEEEcCCeEEEEe
Q psy15995 453 ATGELLYTCGIDDTIKQVD 471 (683)
Q Consensus 453 ~~~~~l~~~~~d~~i~~~~ 471 (683)
..++.|+.++.+|.+..|+
T Consensus 357 ~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 357 AADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EETTEEEEEBTTSCEEEEE
T ss_pred EECCEEEEEeCCCEEEEEe
Confidence 4588999999999999886
No 224
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.46 E-value=1.2e-10 Score=110.04 Aligned_cols=228 Identities=13% Similarity=0.085 Sum_probs=151.5
Q ss_pred eEEEEECCCC-cEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEE
Q psy15995 88 VNVAKYSPSG-FYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVR 166 (683)
Q Consensus 88 v~~~~~s~d~-~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~ 166 (683)
..+.+|+|++ .++++...++.|..||..+++.. .+.. + ..+.+++++++|+++++. .+ .|.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-~--------------~~v~~i~~~~dg~l~v~~-~~-gl~ 112 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL-P--------------FMGSALAKISDSKQLIAS-DD-GLF 112 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-S--------------SCEEEEEEEETTEEEEEE-TT-EEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEC-C--------------CcceEEEEeCCCeEEEEE-CC-CEE
Confidence 4577899974 55666667889999999876432 1111 1 457888999999987765 33 499
Q ss_pred EEeccccceeeeccccc--cCCCeeEEEEcCCCCeEEEEecCC--ceEEEEEEccCCCceeeeecCCcCeEEEEeecCCC
Q psy15995 167 IWDTVNKEHILKNEFHP--IGGPIKDIAWSPDNQRMVVVGEGR--ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRP 242 (683)
Q Consensus 167 iwd~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 242 (683)
+||..+++......... ....+.+++++|+|+..+...... .....+|.++.++ ...+..+......++|+|+++
T Consensus 113 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~~~i~~s~dg~ 191 (326)
T 2ghs_A 113 LRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK-VTKLFADISIPNSICFSPDGT 191 (326)
T ss_dssp EEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE-EEEEEEEESSEEEEEECTTSC
T ss_pred EEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCc-EEEeeCCCcccCCeEEcCCCC
Confidence 99998876432222111 124688999999998665443210 0113444444333 333333445678999999998
Q ss_pred eEEEEeeCCCeEEEEcCC--CC-ce-----eeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCc
Q psy15995 243 FRIITGSEDNTIAVFEGP--PF-KF-----KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPA 314 (683)
Q Consensus 243 ~~l~~~~~d~~i~iw~~~--~~-~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 314 (683)
.++++.+.++.|.+|+.. ++ +. ...+......+..+++.++|++.++...++.|.+|+. +++.+..+..
T Consensus 192 ~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~-- 268 (326)
T 2ghs_A 192 TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV-- 268 (326)
T ss_dssp EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC--
T ss_pred EEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEEC--
Confidence 655666678899999975 55 31 2222233456788999999987776666788999997 5777666654
Q ss_pred cccCeEEEEEc-cCCCEEEEEECC
Q psy15995 315 HKGGVYAVAWK-PDGTQLLTASGD 337 (683)
Q Consensus 315 ~~~~i~~~~~~-~~~~~l~~~~~d 337 (683)
+...+.+++|. ++++.|++++..
T Consensus 269 ~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 269 PGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp SCSBEEEEEEESTTSCEEEEEEBC
T ss_pred CCCCcEEEEEecCCCCEEEEEecC
Confidence 45579999998 888877666544
No 225
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.46 E-value=4.7e-11 Score=111.45 Aligned_cols=228 Identities=11% Similarity=0.052 Sum_probs=151.5
Q ss_pred eEEEeeCCCCCeEEEe--cCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccc
Q psy15995 47 PIVLGGDPKGKNFLYT--NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE 124 (683)
Q Consensus 47 ~~~~~~s~~~~~l~~~--~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~ 124 (683)
.-...|+|+++.|.+. .++.|..||.++++.. .+. ....+.+++++++|+++++. ++.|.+||..+++......
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~ 90 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLAT 90 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEe
Confidence 3466789977766665 4689999999887653 232 45689999999999966654 4579999998775432211
Q ss_pred cccCCCCcccceeeeeecceeeeEeeccceEEEeecC---------CccEEEEeccccceeeeccccccCCCeeEEEEcC
Q psy15995 125 FHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDI---------SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP 195 (683)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 195 (683)
... +. ....+..+++.|+|+++++... ...-.+|.+........ ..........++|+|
T Consensus 91 ~~~-~~---------~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~--~~~~~~~pngi~~sp 158 (297)
T 3g4e_A 91 VDN-DK---------KNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK--YFDQVDISNGLDWSL 158 (297)
T ss_dssp CCT-TC---------SSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE--EEEEESBEEEEEECT
T ss_pred cCC-CC---------CCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE--EeeccccccceEEcC
Confidence 110 00 1145788999999997765422 12334554443211111 112224568899999
Q ss_pred CCCeEEEEecCCceEEEEEEc--cCCCc-----eeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeec
Q psy15995 196 DNQRMVVVGEGRERFGHVFMS--ETGTS-----VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK 268 (683)
Q Consensus 196 ~~~~l~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 268 (683)
|++.++++...... +..++. .++.. ...+..+......+++.+++.. .++...++.|..||..+++.+..+
T Consensus 159 dg~~lyv~~~~~~~-i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~l-wva~~~~~~v~~~d~~tG~~~~~i 236 (297)
T 3g4e_A 159 DHKIFYYIDSLSYS-VDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKL-WVACYNGGRVIRLDPVTGKRLQTV 236 (297)
T ss_dssp TSCEEEEEEGGGTE-EEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCE-EEEEETTTEEEEECTTTCCEEEEE
T ss_pred CCCEEEEecCCCCc-EEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCE-EEEEcCCCEEEEEcCCCceEEEEE
Confidence 99988877654433 455655 34432 2223334456789999999973 666667788999999889988888
Q ss_pred cccccCeEEEEEC-CCCCEEEEEcC
Q psy15995 269 QEHSRFVQAVRYS-PSGSHFASAGF 292 (683)
Q Consensus 269 ~~~~~~v~~~~~~-~~~~~l~~~~~ 292 (683)
..+...+++++|. |+++.|++++.
T Consensus 237 ~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 237 KLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp ECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred ECCCCCceEEEEeCCCCCEEEEEcC
Confidence 8777789999998 88887766554
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.44 E-value=1.3e-11 Score=117.74 Aligned_cols=273 Identities=15% Similarity=0.103 Sum_probs=169.7
Q ss_pred cCeEEEEECCCCCEEEEEcC--CCcEEEEeCCCCeeEEecc-----CCccccCeEEEEEccCCCEEEEEEC-----CCcE
Q psy15995 273 RFVQAVRYSPSGSHFASAGF--DGKVFLYDGASADLVSELG-----NPAHKGGVYAVAWKPDGTQLLTASG-----DKTC 340 (683)
Q Consensus 273 ~~v~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i 340 (683)
..+..++++++|+.+++... ++.+++|.+.+++.. .+. ...+...+..++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 67899999999998888642 342445544455433 221 1124568999999999876555433 4789
Q ss_pred EEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEE-E
Q psy15995 341 KLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVF-T 419 (683)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~ 419 (683)
.+||+.+++.+..+..... ...+...+..+++++++..++ +
T Consensus 96 ~~~d~~tg~~~~~~~~~~~--------------------------------------~~~~~~~~~~v~vd~~~g~~yvt 137 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPP--------------------------------------ITLSNSFVNDLAVDLIHNFVYIS 137 (343)
T ss_dssp EEEETTTTEEEEEEECCTT--------------------------------------TSCTTCCCCEEEEETTTTEEEEE
T ss_pred EEEECCCCeEEEEEECChh--------------------------------------hcccccccceEEEecCCCEEEEE
Confidence 9999998876655432110 011234567889998655554 4
Q ss_pred Ee---CCCcEEEEcCCCCCcceeccCCCCcce---eEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeee
Q psy15995 420 GS---HDGFITRWNAKTGENDRVQGAGHGNQI---NGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDI 493 (683)
Q Consensus 420 ~~---~dg~i~~w~~~~~~~~~~~~~~~~~~v---~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (683)
-. .++.|.+||+.+++..+... .|.... ..+...+..+.+...++.++.|..
T Consensus 138 d~~~~~~~~i~v~d~~~g~~~r~~~-~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~--------------------- 195 (343)
T 2qe8_A 138 DPAPDDKAALIRVDLQTGLAARVLQ-GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL--------------------- 195 (343)
T ss_dssp ECCSGGGCEEEEEETTTCCEEEECT-TCTTTSCCSCCCEETTEECBEECTTSCEECCCC---------------------
T ss_pred cCccCCCCeEEEEECCCCCEEEEec-CCCcccccccceeECCEEEEeccCCCceeceec---------------------
Confidence 44 57899999998887655442 211100 122233444444555555544321
Q ss_pred cCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCC-cEEEEEcC---CCcc-----Ccc-eeecC
Q psy15995 494 DENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADS-KVHIYELN---NKSL-----SPK-AELDH 563 (683)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~---~~~~-----~~~-~~~~~ 563 (683)
.+..++++|+++.|+++..++ .+..++.. .+.. ... ...++
T Consensus 196 -----------------------------~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~ 246 (343)
T 2qe8_A 196 -----------------------------GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSE 246 (343)
T ss_dssp -----------------------------CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEE
T ss_pred -----------------------------ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEeccc
Confidence 246799999999888887665 45555432 1110 001 11123
Q ss_pred CcCeeEEEECCCCCEEEEEeCCCeEEEEECCCCccccccceeeecccEEEEEecCCCCeEEEeecCCcEEEEe
Q psy15995 564 LGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWS 636 (683)
Q Consensus 564 ~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~ 636 (683)
......++++++|.++++...++.|.+||..+++........ +...+.+++|.++++++++.+..+.+.+|.
T Consensus 247 ~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 247 KPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred CCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEECCCCcEEEEeCccccccccc
Confidence 445678999999999999889999999998566543222111 245689999999999888877666554444
No 227
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.44 E-value=3.4e-11 Score=114.89 Aligned_cols=321 Identities=12% Similarity=0.030 Sum_probs=196.9
Q ss_pred eCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEee
Q psy15995 71 NIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVL 150 (683)
Q Consensus 71 ~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 150 (683)
|.++++..-.+..+.....++.+..+|. |..++.++.|..|| .+++.+....... ..+..+...
T Consensus 5 ~~~~g~~~W~~~~~~~~~~~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~--------------~~~~~~~~~ 68 (330)
T 3hxj_A 5 GVNDCKIKWEFLIGNSIDSSPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGE--------------IIECRPSIG 68 (330)
T ss_dssp -------CCTTTSCEEECCCCEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGG--------------EEEECCEET
T ss_pred ccCCceEEEEEeCCCCcccCceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCC--------------CcccceEEe
Confidence 3344444444444444445566666764 55667788899999 8887665544321 345666777
Q ss_pred ccceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeecCCc
Q psy15995 151 SIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSK 230 (683)
Q Consensus 151 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (683)
++|...+ ++.+ |..+|. +++.+....... .......+. +..+.+++.+.. +..++.+ ++.......+..
T Consensus 69 ~~g~l~v-~t~~--l~~~d~-~g~~~~~~~~~~--~~~~~~~~~--~~~l~v~t~~~~--l~~~d~~-g~~~~~~~~~~~ 137 (330)
T 3hxj_A 69 KDGTIYF-GSDK--VYAINP-DGTEKWRFDTKK--AIVSDFTIF--EDILYVTSMDGH--LYAINTD-GTEKWRFKTKKA 137 (330)
T ss_dssp TTTEECC-SSCE--EEEECC-CGGGGGGSCC-------CCEEEE--TTEEEEECTTSE--EEEECTT-SCEEEEEECSSC
T ss_pred cCCcEEE-ecCc--EEEECC-CCcEEEEEECCC--CcccCceEE--CCEEEEEecCCE--EEEEcCC-CCEEEEEcCCCc
Confidence 7776444 4444 888886 555544433322 222333333 445555554432 4555555 676666666666
Q ss_pred CeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEec
Q psy15995 231 PINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL 310 (683)
Q Consensus 231 ~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 310 (683)
.+.++...+++. +..++.++.+..+|.. ++...........+.++...+++.. ..++ +.+..+| .+++.....
T Consensus 138 ~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l-~v~t--~~l~~~d-~~g~~~~~~ 210 (330)
T 3hxj_A 138 IYATPIVSEDGT--IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTI-YFGS--DKVYAIN-PDGTEKWNF 210 (330)
T ss_dssp CCSCCEECTTSC--EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCE-EEES--SSEEEEC-TTSCEEEEE
T ss_pred eeeeeEEcCCCE--EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEE-EEEe--CEEEEEC-CCCcEEEEE
Confidence 677777777775 7778888999999988 7776666555566777888788874 4455 7899999 777776666
Q ss_pred cCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCC
Q psy15995 311 GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNN 390 (683)
Q Consensus 311 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~ 390 (683)
.. ....+.++...+++. +..++.++.+..+|. +++....+....... ..... ..+..+.+++.+|.+..+|. .
T Consensus 211 ~~--~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~-~~~~~-~~~g~l~v~t~~ggl~~~d~-~ 283 (330)
T 3hxj_A 211 YA--GYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIE-SSPVI-GNTDTIYFGSYDGHLYAINP-D 283 (330)
T ss_dssp CC--SSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCC-SCCEE-CTTSCEEEECTTCEEEEECT-T
T ss_pred cc--CCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCcc-ccceE-cCCCeEEEecCCCCEEEECC-C
Confidence 53 445677888887775 666677788888874 555555554433221 12222 23567888899989999985 3
Q ss_pred CCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC
Q psy15995 391 PSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTG 434 (683)
Q Consensus 391 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~ 434 (683)
.+....+......+.++...+++. |..++.+|.+++...+..
T Consensus 284 -g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 284 -GTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp -SCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred -CcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence 333344443445566777767765 566888999998876543
No 228
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.44 E-value=1.8e-10 Score=111.93 Aligned_cols=302 Identities=11% Similarity=0.094 Sum_probs=189.5
Q ss_pred EEEEeeCCCeEEEEcCCCCceeeecccc---------ccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCc
Q psy15995 244 RIITGSEDNTIAVFEGPPFKFKMTKQEH---------SRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPA 314 (683)
Q Consensus 244 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 314 (683)
.+++++.++.|..+|..+++.+...... ...+.+. ...++..+++++.++.|..+|.++++.+.......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~ 133 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG 133 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC
Confidence 4788888899999999999887655432 1223222 22245578888889999999999999887665421
Q ss_pred cccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceec--eEEEEecCCEEEEEecCCcEEEEecCCCC
Q psy15995 315 HKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQ--QVSCLWQGDYLLTVSLSGFISYLDVNNPS 392 (683)
Q Consensus 315 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~g~i~~~~~~~~~ 392 (683)
......... +..+++++.++.+..+|..+++.+..+......... .......+..++++..++.+..+|..++.
T Consensus 134 --~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~ 209 (376)
T 3q7m_A 134 --EALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQ 209 (376)
T ss_dssp --CCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCC
T ss_pred --ceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCc
Confidence 111111222 457888888999999999999988777654322100 01111236778888889999999998754
Q ss_pred cceeeeeeccc------cEEEEEEeC--CCCEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEEEEcC
Q psy15995 393 TPIRVIKGHNK------PITALALSP--DRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGID 464 (683)
Q Consensus 393 ~~~~~~~~~~~------~v~~~~~~~--~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d 464 (683)
..-........ .+..+...| .+..++.++.++.+..+|..+++....... .....+...++.++.++.+
T Consensus 210 ~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~---~~~~~~~~~~~~l~~~~~~ 286 (376)
T 3q7m_A 210 MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL---GSVNDFIVDGNRIYLVDQN 286 (376)
T ss_dssp EEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC---CCEEEEEEETTEEEEEETT
T ss_pred EEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC---CCCCCceEECCEEEEEcCC
Confidence 43222111000 000010111 346778888899999999999987655432 2344566678999999999
Q ss_pred CeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCCc
Q psy15995 465 DTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSK 544 (683)
Q Consensus 465 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 544 (683)
+.+..+|..+++........ .........+ .+..|++++.+|.
T Consensus 287 g~l~~~d~~tG~~~w~~~~~-----------------------------------~~~~~~~~~~--~~~~l~v~~~~g~ 329 (376)
T 3q7m_A 287 DRVMALTIDGGVTLWTQSDL-----------------------------------LHRLLTSPVL--YNGNLVVGDSEGY 329 (376)
T ss_dssp CCEEEEETTTCCEEEEECTT-----------------------------------TTSCCCCCEE--ETTEEEEECTTSE
T ss_pred CeEEEEECCCCcEEEeeccc-----------------------------------CCCcccCCEE--ECCEEEEEeCCCe
Confidence 99999998876431110000 0001111222 2467888899999
Q ss_pred EEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEeCCCeEEEEE
Q psy15995 545 VHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYR 592 (683)
Q Consensus 545 i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~ 592 (683)
+..+|..+++.................. .+..|+.++.+|.+..|+
T Consensus 330 l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 330 LHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred EEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 9999999998765554422211122222 255778888899999887
No 229
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.43 E-value=1.1e-11 Score=116.95 Aligned_cols=261 Identities=10% Similarity=-0.006 Sum_probs=173.1
Q ss_pred CEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeec----------CCccEEEEeccccceee
Q psy15995 108 KVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGD----------ISGKVRIWDTVNKEHIL 177 (683)
Q Consensus 108 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~----------~d~~i~iwd~~~~~~~~ 177 (683)
+|.+.|..+++.+.++.... .+ .+.++||++++.++. .++.|.+||+.+++.+.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~--------------~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~ 110 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAF--------------LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA 110 (368)
T ss_dssp EEEEEETTTTEEEEEEEECT--------------TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE
T ss_pred eEEEEECCCCeEEEEEeCCC--------------CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE
Confidence 78899999998887776553 33 799999999888875 47899999999998876
Q ss_pred ecccccc-----CCCeeEEEEcCCCCeEEEEecCCceEEEE--EEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeC
Q psy15995 178 KNEFHPI-----GGPIKDIAWSPDNQRMVVVGEGRERFGHV--FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSE 250 (683)
Q Consensus 178 ~~~~~~~-----~~~i~~~~~s~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 250 (683)
....... ......++|+|||++++++.......+.+ ++..+ +.++.... . ..+.|+++..+++.+.
T Consensus 111 ~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~---~~~~p~g~~~~~~~~~ 183 (368)
T 1mda_H 111 DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-C---FHIHPGAAATHYLGSC 183 (368)
T ss_dssp EEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-C---CCCEEEETTEEECCCC
T ss_pred EEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-c---eEEccCCCeEEEEEcC
Confidence 6654311 13467899999999999987543333445 44444 44443211 1 2245666555677778
Q ss_pred CCeEEEEcCCC-----Cceee----eccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCe--eEEeccCCc-----
Q psy15995 251 DNTIAVFEGPP-----FKFKM----TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD--LVSELGNPA----- 314 (683)
Q Consensus 251 d~~i~iw~~~~-----~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~----- 314 (683)
|+.+.+.+..+ ++... .+.....+. . .+++..++..+. +.+.+.|..+.. .+..+....
T Consensus 184 dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~ 258 (368)
T 1mda_H 184 PASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKA 258 (368)
T ss_dssp TTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHH
T ss_pred CCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccc
Confidence 88888888876 43321 111112233 3 566666666666 999999986542 333322110
Q ss_pred ---cccCeEEEEEccCCCEEEEEEC-C--------CcEEEEECCCCceeeEEEecCcceeceEEEEecCCE-EEEEe-cC
Q psy15995 315 ---HKGGVYAVAWKPDGTQLLTASG-D--------KTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDY-LLTVS-LS 380 (683)
Q Consensus 315 ---~~~~i~~~~~~~~~~~l~~~~~-d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~-~~ 380 (683)
.......++++|++++++++.. . +.+.++|+.+++.+.++..+. ....+.+++++++ +++.. .+
T Consensus 259 ~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~ 336 (368)
T 1mda_H 259 DNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGT 336 (368)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTT
T ss_pred cccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCC
Confidence 1111222689999998887643 2 356799999999988887655 5778889999985 45555 48
Q ss_pred CcEEEEecCCCCcceeeee
Q psy15995 381 GFISYLDVNNPSTPIRVIK 399 (683)
Q Consensus 381 g~i~~~~~~~~~~~~~~~~ 399 (683)
+.+.++|..+ .+.+..+.
T Consensus 337 ~~VsVID~~t-~kvv~~I~ 354 (368)
T 1mda_H 337 EVLDIYDAAS-DQDQSSVE 354 (368)
T ss_dssp TEEEEEESSS-CEEEEECC
T ss_pred CeEEEEECCC-CcEEEEEE
Confidence 9999999988 44444444
No 230
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.43 E-value=2.5e-12 Score=121.35 Aligned_cols=173 Identities=9% Similarity=0.016 Sum_probs=121.3
Q ss_pred CCeEEEeeCCCCCeEEEecCCeEEEEeCCCCc---------ccc-cccCcccceEEEEECCCCcEEEEecCCCCEEEEeC
Q psy15995 45 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPA---------ISD-IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDT 114 (683)
Q Consensus 45 ~~~~~~~~s~~~~~l~~~~~~~i~v~~~~~~~---------~~~-~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~ 114 (683)
..+..+++++..++++++....+++|++++.+ ... ....+.. |++++| |+++|+++ .++.|++||+
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 46788999999999999988899999976543 111 2234566 999999 99999999 8899999999
Q ss_pred CCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEc
Q psy15995 115 VNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWS 194 (683)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s 194 (683)
.+.........+. ..+..+.+.+.. +|+++.||.|.+||+.++.... +...
T Consensus 114 ~sl~~~~~~~~~~--------------~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~------~~~~------- 164 (388)
T 1xip_A 114 EELSEFRTVTSFE--------------KPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ------LAQN------- 164 (388)
T ss_dssp SSTTCEEEEEECS--------------SCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE------EEES-------
T ss_pred hhhhccCccceee--------------cceeeEEecCCC--EEEEECCCCEEEEEccCCcccc------ccCC-------
Confidence 8765433332222 223444444432 8888899999999998765321 1123
Q ss_pred CCCCeEEEEecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCce--eeec----
Q psy15995 195 PDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF--KMTK---- 268 (683)
Q Consensus 195 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~--~~~~---- 268 (683)
|++++|+|+| ++.|..||++++|+....+. ...+
T Consensus 165 -------------------------------------Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp 204 (388)
T 1xip_A 165 -------------------------------------VTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEKQFEFSLPS 204 (388)
T ss_dssp -------------------------------------EEEEEECSSE---EEEEETTSCEEEEEEETTEEEEEEEECCCH
T ss_pred -------------------------------------ceEEEEcCCc---eEEEEcCCcEEEEcCCCccccccceecCCc
Confidence 4555555555 45677788888887766664 4444
Q ss_pred --c---ccccCeEEEEECCCCCEEEEE
Q psy15995 269 --Q---EHSRFVQAVRYSPSGSHFASA 290 (683)
Q Consensus 269 --~---~~~~~v~~~~~~~~~~~l~~~ 290 (683)
. +|...|.++.|.+++.++++=
T Consensus 205 ~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 205 ELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp HHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred ccccccCCCeeEEEEEEecCCeEEEEE
Confidence 2 367889999999999877753
No 231
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.43 E-value=3.3e-07 Score=93.79 Aligned_cols=525 Identities=9% Similarity=-0.001 Sum_probs=285.5
Q ss_pred CCeEEEecCCeEEEEeCCCCccccccc-CcccceEEEEECCCCcEEE-EecCCCCEEEEeCCCcccccccccccCCCCcc
Q psy15995 56 GKNFLYTNGNSVIIRNIENPAISDIYT-EHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 133 (683)
Q Consensus 56 ~~~l~~~~~~~i~v~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~la-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 133 (683)
..+|.++..+.|...++++......+. ..-..+..++|++++..|. +-..++.|..+++........+...
T Consensus 6 ~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g------- 78 (628)
T 4a0p_A 6 EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG------- 78 (628)
T ss_dssp CCEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-------
T ss_pred CcEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCC-------
Confidence 457888889999999998765433322 2345678999999665554 4456788999988654221111110
Q ss_pred cceeeeeecceeeeEeeccce-EEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEE
Q psy15995 134 DIGTLLSLTSIRNILVLSIGF-YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGH 212 (683)
Q Consensus 134 ~~~~~~~~~~i~~~~~s~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~ 212 (683)
......+++.+.+. ..++-...+.|.+.++........ ....-.....+++.|....|+.+..+....+.
T Consensus 79 -------~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l--~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~ 149 (628)
T 4a0p_A 79 -------LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVL--VWKDLDSPRALALDPAEGFMYWTEWGGKPKID 149 (628)
T ss_dssp -------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEE--ECSSCCCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred -------CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEE--EeCCCCCcccEEEccCCCeEEEeCCCCCCEEE
Confidence 13456788886544 445555678899999876432111 11223567899999977777777644222234
Q ss_pred EEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcC
Q psy15995 213 VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGF 292 (683)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 292 (683)
....+ |.....+...-...+.+++++++..+.++-...+.|...++..... ..+.........+++.. +..+++-..
T Consensus 150 r~~~d-G~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~ 226 (628)
T 4a0p_A 150 RAAMD-GSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWS 226 (628)
T ss_dssp EEETT-SCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETT
T ss_pred EEeCC-CCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCC
Confidence 44443 3333344445567889999998776566667778999999765443 23333334456777765 444445455
Q ss_pred CCcEEEEeCCCCeeEEeccCCccccCeEEEEE-ccCCCEEEE-EE----CCCcEEEEECCCCceeeEEEecCcceeceEE
Q psy15995 293 DGKVFLYDGASADLVSELGNPAHKGGVYAVAW-KPDGTQLLT-AS----GDKTCKLWDIETKSVVSEFIMGNQVEDQQVS 366 (683)
Q Consensus 293 dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~-~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 366 (683)
.+.|...|..+++....+.. .......+.. ++..+.-.- |. .-..+.+-... +........+.........
T Consensus 227 ~~~I~~~dk~tg~~~~~l~~--~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~-~~~~C~C~~g~~l~~d~~~ 303 (628)
T 4a0p_A 227 RRSIERANKTSGQNRTIIQG--HLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPV-GGFVCGCPAHYSLNADNRT 303 (628)
T ss_dssp TTEEEEEETTTCCSCEEEEC--SCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETT-TEEEEECSTTCEECTTSSC
T ss_pred CCEEEEEECCCCCceEEEec--CCCCcceeeeeeecccccceEeccCCCCcchhhhcCCC-CCeeEEcCCCcEecccCCc
Confidence 78899999777765544432 1122333322 221110000 00 00012221110 0000000000000000111
Q ss_pred EEecCCEEEEEecCCcEEEEecCCCCcceeeee-eccccEEEEEEeCCCCEEEEEe-CCCcEEEEcCCCCCcceeccC--
Q psy15995 367 CLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIK-GHNKPITALALSPDRGTVFTGS-HDGFITRWNAKTGENDRVQGA-- 442 (683)
Q Consensus 367 ~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~-- 442 (683)
|.+...+++.+ ....|+-..+.........+. ..-..+.+++|.+..+.|+.+. ..+.|+.+++...........
T Consensus 304 C~~~~~~Ll~s-~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~ 382 (628)
T 4a0p_A 304 CSAPTTFLLFS-QKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSV 382 (628)
T ss_dssp EECCSSEEEEE-ETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---
T ss_pred Cccccceeeee-ccceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEccc
Confidence 22223444443 345666665543222111121 1235588899999777776654 467788888765443333321
Q ss_pred ---CCCcceeEEEEe--CC-eEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceee
Q psy15995 443 ---GHGNQINGMKAT--GE-LLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVS 516 (683)
Q Consensus 443 ---~~~~~v~~~~~~--~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (683)
........++++ ++ +.++-+..+.|.+.++..... ...
T Consensus 383 ~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~~------------------------------------~~l 426 (628)
T 4a0p_A 383 PSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSV------------------------------------GVV 426 (628)
T ss_dssp -----CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCEE------------------------------------EEE
T ss_pred ccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCCCeE------------------------------------EEE
Confidence 123356677776 44 445555677888888764311 000
Q ss_pred eecCCCCCcEEEEccCCCEEEEEcC-CC--cEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEeC-CCeEEEEE
Q psy15995 517 SLPIDYEPSSISLDHEHGLVAVGGA-DS--KVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDA-HRKVVLYR 592 (683)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~i~~ 592 (683)
.......+..+++.|...+|..... .. .|...+++..... ......-...+.++++++++.|..++. .+.|...+
T Consensus 427 ~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~-~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~ 505 (628)
T 4a0p_A 427 LKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTERE-VLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSD 505 (628)
T ss_dssp EECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCE-EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcE-EEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEe
Confidence 0011235789999995555554432 22 5777777654432 122223456789999998888877754 57899999
Q ss_pred CCCCccccccceeeecccEEEEEecCCCCeEEEeecCCcEEEEeCCCCcee
Q psy15995 593 VPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKH 643 (683)
Q Consensus 593 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~~~~ 643 (683)
+...... .... .......+|+... +.+..+-.....|...|..+++..
T Consensus 506 ~dG~~r~-~~~~-~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~ 553 (628)
T 4a0p_A 506 LSGANRI-VLED-SNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGR 553 (628)
T ss_dssp TTSCSCE-EEEC-SSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCC
T ss_pred CCCCceE-EEEc-CCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCc
Confidence 8654322 1111 1233456777654 444444445567777777665543
No 232
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.42 E-value=2.7e-11 Score=115.58 Aligned_cols=272 Identities=11% Similarity=0.041 Sum_probs=165.0
Q ss_pred CCeEEEeeCCCCCeEEEec---CCeEEEEeCCCCccc------ccccCcccceEEEEECCCCcEEEEecC-----CCCEE
Q psy15995 45 GQPIVLGGDPKGKNFLYTN---GNSVIIRNIENPAIS------DIYTEHSCAVNVAKYSPSGFYIASGDI-----SGKVR 110 (683)
Q Consensus 45 ~~~~~~~~s~~~~~l~~~~---~~~i~v~~~~~~~~~------~~~~~h~~~v~~~~~s~d~~~las~~~-----dg~i~ 110 (683)
..+..++++|+|+++++.. ++.+.||.+.+++.. ....+|-..+..++++++|+++++-.. ++.|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 4678899999999988852 342455554455443 112246678999999999987665433 57899
Q ss_pred EEeCCCcccccccccccCCCCcccceeeeeecceeeeEeecc-ceEEEeec---CCccEEEEeccccceeeeccccccCC
Q psy15995 111 IWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSI-GFYIASGD---ISGKVRIWDTVNKEHILKNEFHPIGG 186 (683)
Q Consensus 111 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~ 186 (683)
+||+.+++.+..+....... ........+++.++ +...++-. .++.|.+||+.+++..... ..+..
T Consensus 97 ~~d~~tg~~~~~~~~~~~~~--------~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~--~~~~~ 166 (343)
T 2qe8_A 97 AWDTLNNQLSRVIYLPPPIT--------LSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVL--QGYPG 166 (343)
T ss_dssp EEETTTTEEEEEEECCTTTS--------CTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEEC--TTCTT
T ss_pred EEECCCCeEEEEEECChhhc--------ccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEe--cCCCc
Confidence 99999988666654432100 01134578899975 45455554 6789999999887643322 11111
Q ss_pred Ce-eEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCC-eEEEEcCC---C
Q psy15995 187 PI-KDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN-TIAVFEGP---P 261 (683)
Q Consensus 187 ~i-~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~iw~~~---~ 261 (683)
.. ....+.++|..+.+...+.. . ......+..++|+|+++. |+.+..++ .+..++.. .
T Consensus 167 ~~~~~~~~~~~g~~~~~~~~~g~--~--------------~~~~~~~~gia~s~dg~~-ly~~~~~~~~l~~~~~~~~~~ 229 (343)
T 2qe8_A 167 IAPEDIDLVIDGVPVQIGQPDGT--V--------------IRPHLGVNGIVLDAENEW-LYLSPMHSTSMYRIKSADLSN 229 (343)
T ss_dssp TSCCSCCCEETTEECBEECTTSC--E--------------ECCCCCEEEEEECTTSCE-EEEEESSCSEEEEEEHHHHTC
T ss_pred ccccccceeECCEEEEeccCCCc--e--------------eceecccceeEeccCCCE-EEEEeCCCCeEEEEEHHHhcC
Confidence 00 01334445544433322211 0 001134678999999986 55555444 55555421 1
Q ss_pred Cc-----eee--eccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEE
Q psy15995 262 FK-----FKM--TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTA 334 (683)
Q Consensus 262 ~~-----~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 334 (683)
+. ... ...++......++++++|.++++...++.|.+||.++++.......+ +...+.+++|.++++++++.
T Consensus 230 ~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~~~g~l~v~~ 308 (343)
T 2qe8_A 230 LQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFGSDGYLYFDC 308 (343)
T ss_dssp TTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEECTTSCEEEEE
T ss_pred CCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEECCCCcEEEEe
Confidence 11 000 11123345667999999998888888999999998567654433321 34568999999998887777
Q ss_pred ECCCcEEEEE
Q psy15995 335 SGDKTCKLWD 344 (683)
Q Consensus 335 ~~dg~i~iwd 344 (683)
+..+.+.+|+
T Consensus 309 ~~~~~~~~f~ 318 (343)
T 2qe8_A 309 NQLHHSAPLN 318 (343)
T ss_dssp CCGGGSGGGB
T ss_pred Cccccccccc
Confidence 6555444443
No 233
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=99.41 E-value=3.6e-07 Score=99.88 Aligned_cols=344 Identities=13% Similarity=0.154 Sum_probs=194.1
Q ss_pred CEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEE
Q psy15995 329 TQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITAL 408 (683)
Q Consensus 329 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~ 408 (683)
..++-.... .|++.+......+.++.......+... +-++.+++.+. ++.+.++++..+......-..-...|.|+
T Consensus 484 ~~ivQVt~~-~Irli~~~~~~~~~~w~~p~~~~I~~A--s~n~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl 559 (1158)
T 3ei3_A 484 QQLIQITSA-SVRLVSQEPKALVSEWKEPQAKNISVA--SCNSSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACL 559 (1158)
T ss_dssp TEEEEEESS-CEEEEESSSCCEEEEECCTTCCCCCEE--EECSSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEE
T ss_pred CeEEEEecC-EEEEEECCCCeEEEEEECCCCCEEEEE--EeCCCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEE
Confidence 355555544 478888766556656544333233333 33455666664 67888887765321111112235689999
Q ss_pred EEeCC------CCEEEEEeC-CCcEEEEcCCCCCcceeccCCCCcceeEEEEe----CCeEEEEEcCCeEEEEeCCC--C
Q psy15995 409 ALSPD------RGTVFTGSH-DGFITRWNAKTGENDRVQGAGHGNQINGMKAT----GELLYTCGIDDTIKQVDLSS--N 475 (683)
Q Consensus 409 ~~~~~------~~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~d~~i~~~~~~~--~ 475 (683)
++.|. +.+++.|.. |++++++++.+.+.......+......++... ..+|..+-.||.+..+.+.. +
T Consensus 560 ~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg 639 (1158)
T 3ei3_A 560 DITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETG 639 (1158)
T ss_dssp ECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTC
T ss_pred EeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCC
Confidence 98763 468999996 99999999987665544332222233334332 34678888999987666543 2
Q ss_pred cccCC-ceecCCCCceeeec---CC-eEEEEEeceEEEEeCCceeeeecCCC-CCcEE-EEccC--CCEEEEEcCCCcEE
Q psy15995 476 AYSGP-EVKLGSQPRGLDID---EN-TLVTVTVKQISIVENGAKVSSLPIDY-EPSSI-SLDHE--HGLVAVGGADSKVH 546 (683)
Q Consensus 476 ~~~~~-~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~--~~~l~~~~~dg~i~ 546 (683)
.+... ...++..+..+..- .. .+.....+...++.........+... .+..+ .|+.. ..-++..+ ++.++
T Consensus 640 ~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~Lr 718 (1158)
T 3ei3_A 640 LLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLT 718 (1158)
T ss_dssp CEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEE
T ss_pred ccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEEEEc-CCceE
Confidence 22221 12344444443211 11 33444445555554333333333322 23333 34322 12333333 45599
Q ss_pred EEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEeCC-----------------------------------------
Q psy15995 547 IYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH----------------------------------------- 585 (683)
Q Consensus 547 i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----------------------------------------- 585 (683)
|..++..+......++-...+..++++|+.+.++.+..+
T Consensus 719 I~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1158)
T 3ei3_A 719 IGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET 798 (1158)
T ss_dssp EEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC---------
T ss_pred EEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchh
Confidence 998866544334444455678888888877765543311
Q ss_pred --------CeEEEEECCCCccccccceeeecccEEEEE---ecCC-CCeEEEee----------cCCcEEEEeCCCCcee
Q psy15995 586 --------RKVVLYRVPDFELAHNKEWGFHSAKVNCVA---WSPD-SALVASGS----------LDTTIIIWSLASPAKH 643 (683)
Q Consensus 586 --------~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~---~s~d-~~~l~~~~----------~d~~v~iw~~~~~~~~ 643 (683)
..+++.|-.+.+.+....+. ....+.+++ |..+ ..+|++|. ..|.|++|++...+..
T Consensus 799 ~~g~~~~~s~i~lidp~t~~~i~~~~l~-~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~ 877 (1158)
T 3ei3_A 799 SFGEEVEVHNLLIIDQHTFEVLHAHQFL-QNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQ 877 (1158)
T ss_dssp -CCCEEEEEEEEEEETTTCCEEEEEECC-TTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEE
T ss_pred hcCCceeeEEEEEEeCCCCeEEEEEeCC-CCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEE
Confidence 23677777777765554444 344455555 4333 46888876 3478999999855444
Q ss_pred eEeecCCCCCCeeEEEEccCCeEEEeeCCCcEEEEeec
Q psy15995 644 IIIKNAHPQSQITRLQWLDNDLLVSVGQDCNTKIWEIA 681 (683)
Q Consensus 644 ~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~v~vw~~~ 681 (683)
...+.. ..++|++|+-..+.+|++. ...|++|++.
T Consensus 878 lv~~~~-v~g~v~al~~~~g~Lla~i--g~~l~vy~l~ 912 (1158)
T 3ei3_A 878 TVAEKE-VKGAVYSMVEFNGKLLASI--NSTVRLYEWT 912 (1158)
T ss_dssp EEEEEE-ESSCEEEEEEETTEEEEEE--TTEEEEEEEC
T ss_pred EEEEEE-cCCcCEEEeeeCCEEEEEc--CCEEEEEECC
Confidence 333322 3678999987777544444 3679999885
No 234
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.40 E-value=6e-11 Score=113.18 Aligned_cols=300 Identities=10% Similarity=0.005 Sum_probs=193.5
Q ss_pred EeeCCCCCeEEEecCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCC
Q psy15995 50 LGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIG 129 (683)
Q Consensus 50 ~~~s~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~ 129 (683)
+....+|.+.+.+.++.|..|| .+++....+..+...+.++...++|++. .++.+ |..+|. +++.+..+....
T Consensus 25 ~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t~~--l~~~d~-~g~~~~~~~~~~-- 97 (330)
T 3hxj_A 25 PILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIY-FGSDK--VYAINP-DGTEKWRFDTKK-- 97 (330)
T ss_dssp CEECTTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEEC-CSSCE--EEEECC-CGGGGGGSCC----
T ss_pred ceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEE-EecCc--EEEECC-CCcEEEEEECCC--
Confidence 3456777766666688899999 8888766666566677888888888644 44444 888886 666655544332
Q ss_pred CCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCce
Q psy15995 130 GPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRER 209 (683)
Q Consensus 130 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~ 209 (683)
.......+. +..|..++.++.|..+|.. ++....... ....+.++...+++... +++.+.
T Consensus 98 ------------~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~--~~~~~~~~~~~~~g~l~-vgt~~~-- 157 (330)
T 3hxj_A 98 ------------AIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKT--KKAIYATPIVSEDGTIY-VGSNDN-- 157 (330)
T ss_dssp ---------------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEEC--SSCCCSCCEECTTSCEE-EECTTS--
T ss_pred ------------CcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcC--CCceeeeeEEcCCCEEE-EEcCCC--
Confidence 111222233 4456677788999999988 665544433 23456677777777744 444332
Q ss_pred EEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEE
Q psy15995 210 FGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFAS 289 (683)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 289 (683)
.+..++.+ ++...........+.++...+++. +..++ +.+..+| .+++...........+.++...++|. +..
T Consensus 158 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~--l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v 230 (330)
T 3hxj_A 158 YLYAINPD-GTEKWRFKTNDAITSAASIGKDGT--IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYV 230 (330)
T ss_dssp EEEEECTT-SCEEEEEECSSCCCSCCEECTTCC--EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEE
T ss_pred EEEEECCC-CCEeEEEecCCCceeeeEEcCCCE--EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEE
Confidence 25566666 777667666666777888877776 55555 8899999 77777766665666788888888886 555
Q ss_pred EcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEe
Q psy15995 290 AGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW 369 (683)
Q Consensus 290 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (683)
++.++.+..++ .+++....+.. ....+..+...+++ .|..++.+|.+..+|. +++....+..... ....+...
T Consensus 231 ~t~~~gl~~~~-~~g~~~~~~~~--~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~-~~~~~~~d- 303 (330)
T 3hxj_A 231 TSLDGHLYAIN-PDGTEKWRFKT--GKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSW-IIATPVID- 303 (330)
T ss_dssp EETTTEEEEEC-TTSCEEEEEEC--SSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSC-CCSCCEEC-
T ss_pred EcCCCeEEEEC-CCCCEeEEeeC--CCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCc-cccceEEc-
Confidence 66678888888 45655555543 22333445555555 5777788888999996 6666665544321 22222222
Q ss_pred cCCEEEEEecCCcEEEEecCC
Q psy15995 370 QGDYLLTVSLSGFISYLDVNN 390 (683)
Q Consensus 370 ~~~~l~~~~~~g~i~~~~~~~ 390 (683)
.+..+.+++.+|.+.+.....
T Consensus 304 ~~g~l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 304 ENGTIYFGTRNGKFYALFNLE 324 (330)
T ss_dssp TTCCEEEECTTSCEEEEEC--
T ss_pred CCCEEEEEcCCCeEEEEeccc
Confidence 445678899999999887664
No 235
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.40 E-value=2e-10 Score=119.70 Aligned_cols=313 Identities=13% Similarity=0.100 Sum_probs=195.1
Q ss_pred CcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEecccccee
Q psy15995 97 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHI 176 (683)
Q Consensus 97 ~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~ 176 (683)
+..|++++.++.|.-+|..+|+.+.++............. .....-...-++..+++++.|+.|..+|..+|+.+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~ 144 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEAC-----CDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRA 144 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCT-----TCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCcccccccc-----ccCCCCccEEECCEEEEEccCCEEEEEECCCCCEe
Confidence 4567777778899999999999988876542110000000 00000011224557888889999999999999988
Q ss_pred eeccccccCCCeeEEEEcC---CCCeEEEEecC----CceEEEEEEccCCCceeeeecCC--------------------
Q psy15995 177 LKNEFHPIGGPIKDIAWSP---DNQRMVVVGEG----RERFGHVFMSETGTSVGEISGQS-------------------- 229 (683)
Q Consensus 177 ~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-------------------- 229 (683)
..............+..+| ++ .+++.... .+..+..++.++|+.+..+....
T Consensus 145 W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 223 (689)
T 1yiq_A 145 WSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWF 223 (689)
T ss_dssp EEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCC
T ss_pred eeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccC
Confidence 7766531111111111222 33 34443322 23457778888888876654210
Q ss_pred -----------cCeEEEEeecCCCeEEEEeeCCC-------------------eEEEEcCCCCceeeeccc--cc-----
Q psy15995 230 -----------KPINSCDFKPSRPFRIITGSEDN-------------------TIAVFEGPPFKFKMTKQE--HS----- 272 (683)
Q Consensus 230 -----------~~v~~~~~~~~~~~~l~~~~~d~-------------------~i~iw~~~~~~~~~~~~~--~~----- 272 (683)
..-..+++.|++.. ++.+..++ .|..+|..+++.+..++. |.
T Consensus 224 g~~w~~~~~g~~~w~~~~~d~~~~~-vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~ 302 (689)
T 1yiq_A 224 GDAYVEQGGGGTAWDSFAYDPELNL-LYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYT 302 (689)
T ss_dssp SSTHHHHCEECCCCSCEEEETTTTE-EEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCC
T ss_pred CceeeecCCCCccccceeEcCCCCE-EEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccccccc
Confidence 11125788888774 77777765 399999999998877653 21
Q ss_pred --cCeEEEEECCCCC---EEEEEcCCCcEEEEeCCCCeeEEeccCCc--------------------------ccc----
Q psy15995 273 --RFVQAVRYSPSGS---HFASAGFDGKVFLYDGASADLVSELGNPA--------------------------HKG---- 317 (683)
Q Consensus 273 --~~v~~~~~~~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--------------------------~~~---- 317 (683)
..+.......+|+ .++.++.+|.++++|..+|+.+....... ...
T Consensus 303 ~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~ 382 (689)
T 1yiq_A 303 ATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVT 382 (689)
T ss_dssp CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEES
T ss_pred CCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeC
Confidence 1222223333564 78889999999999999999875432210 000
Q ss_pred -------CeEEEEEccCCCEEEEEEC---------------------------------------------CCcEEEEEC
Q psy15995 318 -------GVYAVAWKPDGTQLLTASG---------------------------------------------DKTCKLWDI 345 (683)
Q Consensus 318 -------~i~~~~~~~~~~~l~~~~~---------------------------------------------dg~i~iwd~ 345 (683)
.-..++++|+..++++... +|.|..||+
T Consensus 383 p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~ 462 (689)
T 1yiq_A 383 PAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP 462 (689)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET
T ss_pred CCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC
Confidence 0112688888888777532 367999999
Q ss_pred CCCceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEE
Q psy15995 346 ETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVF 418 (683)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 418 (683)
.+++.+.++....... .-.+...+..++.++.+|.++.||.++++..-+.-.++.....-+.|..+|+..+
T Consensus 463 ~tG~~~W~~~~~~~~~--~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 463 VKQQAAWEVPYVTIFN--GGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp TTTEEEEEEEESSSCC--CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCCCeEeEccCCCCcc--CccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence 9999988876654332 2345568889999999999999999986554333223322234466777886544
No 236
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.39 E-value=3e-10 Score=107.37 Aligned_cols=224 Identities=8% Similarity=-0.041 Sum_probs=146.8
Q ss_pred eEEEeeCCCCCeEEEe--cCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccc
Q psy15995 47 PIVLGGDPKGKNFLYT--NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE 124 (683)
Q Consensus 47 ~~~~~~s~~~~~l~~~--~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~ 124 (683)
....+|+|+++.+++. .++.|..||.++++... +. ....+.+++++|+|+++++. .+ .|.+||..+++......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEEC
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEee
Confidence 3466799987766655 46799999998876532 32 34679999999999888765 34 49999998775432111
Q ss_pred cccCCCCcccceeeeeecceeeeEeeccceEEEeecC------CccEEEEeccccceeeeccccccCCCeeEEEEcCCCC
Q psy15995 125 FHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDI------SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ 198 (683)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 198 (683)
. ... .....+..++++|+|+++++... .+.|..++ +++... . .........++|+||++
T Consensus 127 ~-~~~---------~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~--~~~~~~~~~i~~s~dg~ 191 (326)
T 2ghs_A 127 L-ESD---------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-L--FADISIPNSICFSPDGT 191 (326)
T ss_dssp S-STT---------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-E--EEEESSEEEEEECTTSC
T ss_pred C-CCC---------CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-e--eCCCcccCCeEEcCCCC
Confidence 1 000 00145788999999987665432 24555555 443221 1 11224567899999999
Q ss_pred eEEEEecCCceEEEEEEcc--CC-Cc-----eeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccc
Q psy15995 199 RMVVVGEGRERFGHVFMSE--TG-TS-----VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE 270 (683)
Q Consensus 199 ~l~~~~~~~~~~~~~~~~~--~~-~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 270 (683)
.++++..... .+.+++.+ ++ .. ...+.........+++.+++.. .++...++.|.+|+. +++....+..
T Consensus 192 ~lyv~~~~~~-~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~l-wva~~~~~~v~~~d~-~g~~~~~i~~ 268 (326)
T 2ghs_A 192 TGYFVDTKVN-RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHI-WNARWGEGAVDRYDT-DGNHIARYEV 268 (326)
T ss_dssp EEEEEETTTC-EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCE-EEEEETTTEEEEECT-TCCEEEEEEC
T ss_pred EEEEEECCCC-EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCE-EEEEeCCCEEEEECC-CCCEEEEEEC
Confidence 8887765432 35666664 45 21 1122233456788999999974 555556688999997 5666666666
Q ss_pred cccCeEEEEEC-CCCCEEEEEcC
Q psy15995 271 HSRFVQAVRYS-PSGSHFASAGF 292 (683)
Q Consensus 271 ~~~~v~~~~~~-~~~~~l~~~~~ 292 (683)
+...+.+++|+ ++++.|++++.
T Consensus 269 ~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 269 PGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp SCSBEEEEEEESTTSCEEEEEEB
T ss_pred CCCCcEEEEEecCCCCEEEEEec
Confidence 66779999998 88887665543
No 237
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.37 E-value=2.6e-11 Score=114.53 Aligned_cols=178 Identities=10% Similarity=0.013 Sum_probs=136.2
Q ss_pred cceeeeEeeccceEEEeecCCccEEEEeccccce--------eeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEE
Q psy15995 142 TSIRNILVLSIGFYIASGDISGKVRIWDTVNKEH--------ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHV 213 (683)
Q Consensus 142 ~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~ 213 (683)
..+..+++++...++++|+.++ +.+|++.+.+. ........+.. |..++| |++.|+++ .+ ..+.+
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~--~~l~v 110 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TR--NALYS 110 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ES--SEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cC--CcEEE
Confidence 4688999999999999999875 55599875541 01111223446 999999 99999988 33 34788
Q ss_pred EEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcCC
Q psy15995 214 FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD 293 (683)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 293 (683)
|+..+.........|...+.++.+.+.. +++++.||.+.+||+.++.... +...|+|++|+|+| ++.|..|
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p~---~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNNT---LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSSE---EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETT
T ss_pred EEchhhhccCccceeecceeeEEecCCC---EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcC
Confidence 8888776666777888888887776552 8888999999999998877643 45689999999999 6778889
Q ss_pred CcEEEEeCCCCee--EEeccCC-------ccccCeEEEEEccCCCEEEEEE
Q psy15995 294 GKVFLYDGASADL--VSELGNP-------AHKGGVYAVAWKPDGTQLLTAS 335 (683)
Q Consensus 294 g~i~iw~~~~~~~--~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~ 335 (683)
|++++|+...++. ...+..+ .|...|.++.|.+++.++++-.
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9999999888775 5555221 2568899999999988887644
No 238
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.36 E-value=1.6e-10 Score=108.33 Aligned_cols=230 Identities=11% Similarity=0.012 Sum_probs=150.7
Q ss_pred eEEEeeCCCCCeEEEe--cCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccc
Q psy15995 47 PIVLGGDPKGKNFLYT--NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE 124 (683)
Q Consensus 47 ~~~~~~s~~~~~l~~~--~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~ 124 (683)
.....|+|+|+.|++. .++.|..|+. +++. ..+..+...+..++++++|+++++...++.|.+|+.. ++. ..+.
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~-~~~~ 122 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA-HLLV 122 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEE
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCE-EEEE
Confidence 3467799999955554 4689999998 4443 4455567789999999999977776666789999976 432 1111
Q ss_pred cccCCCCcccceeeeeecceeeeEeeccceEEEe----ecC-------------CccEEEEeccccceeeeccccccCCC
Q psy15995 125 FHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIAS----GDI-------------SGKVRIWDTVNKEHILKNEFHPIGGP 187 (683)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~----~~~-------------d~~i~iwd~~~~~~~~~~~~~~~~~~ 187 (683)
....+ .....+..+++.++|+..++ |.. .+.|..||..+++..... ....
T Consensus 123 ~~~~~---------~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~----~~~~ 189 (305)
T 3dr2_A 123 GRYAG---------KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA----DLDH 189 (305)
T ss_dssp CEETT---------EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE----EESS
T ss_pred eccCC---------CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe----cCCC
Confidence 11000 11145678999999998886 332 356788887666543221 2245
Q ss_pred eeEEEEcCCCCeEEEEecCC----ceEEEEEEccCCCcee---ee-ecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcC
Q psy15995 188 IKDIAWSPDNQRMVVVGEGR----ERFGHVFMSETGTSVG---EI-SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEG 259 (683)
Q Consensus 188 i~~~~~s~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~---~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~ 259 (683)
...++|+||++.|+++.... ...+.+++.+.+. +. .+ .........+++.++|+ +.++..+ .|.+|+.
T Consensus 190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~--lwv~~~~-gv~~~~~ 265 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW--LWSSSGT-GVCVFDS 265 (305)
T ss_dssp EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSC--EEECCSS-EEEEECT
T ss_pred CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCC--EEEecCC-cEEEECC
Confidence 67899999999888876642 1235666665433 11 11 11234456789999997 4444544 5999997
Q ss_pred CCCceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEe
Q psy15995 260 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYD 300 (683)
Q Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 300 (683)
.++....+..+. .+..++|+++++.|..++.++ +..++
T Consensus 266 -~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 266 -DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp -TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred -CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 566666665444 588999999998888877654 44433
No 239
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.35 E-value=1.7e-10 Score=108.23 Aligned_cols=235 Identities=9% Similarity=-0.020 Sum_probs=150.4
Q ss_pred cccccCcccceEEEEECCCCc-EEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEE
Q psy15995 78 SDIYTEHSCAVNVAKYSPSGF-YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYI 156 (683)
Q Consensus 78 ~~~~~~h~~~v~~~~~s~d~~-~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 156 (683)
+..+..+.......+|+|+|+ ++++...++.|..|+.. ++ ...+.... ..+..++++++|+++
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~--------------~~~~gl~~d~dG~l~ 100 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLDAT--------------AFTNGNAVDAQQRLV 100 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEESC--------------SCEEEEEECTTSCEE
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeCCC--------------CccceeeECCCCCEE
Confidence 344555666778999999998 56677788899999974 43 22222111 457789999999987
Q ss_pred EeecCCccEEEEeccccceeeecc-cc-ccCCCeeEEEEcCCCCeEEEE----ecCC---------ceEEEEEEcc--CC
Q psy15995 157 ASGDISGKVRIWDTVNKEHILKNE-FH-PIGGPIKDIAWSPDNQRMVVV----GEGR---------ERFGHVFMSE--TG 219 (683)
Q Consensus 157 ~~~~~d~~i~iwd~~~~~~~~~~~-~~-~~~~~i~~~~~s~~~~~l~~~----~~~~---------~~~~~~~~~~--~~ 219 (683)
++...++.|.+|+.. ++...... .. .....+.++++.|+|+..++- .... .....++.++ ++
T Consensus 101 v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g 179 (305)
T 3dr2_A 101 HCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS 179 (305)
T ss_dssp EEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC
T ss_pred EEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC
Confidence 777777889999986 44221111 11 112457789999999876641 1100 0013444444 45
Q ss_pred CceeeeecCCcCeEEEEeecCCCeEEEEeeCC------CeEEEEcCCCCcee--eec-cccccCeEEEEECCCCCEEEEE
Q psy15995 220 TSVGEISGQSKPINSCDFKPSRPFRIITGSED------NTIAVFEGPPFKFK--MTK-QEHSRFVQAVRYSPSGSHFASA 290 (683)
Q Consensus 220 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------~~i~iw~~~~~~~~--~~~-~~~~~~v~~~~~~~~~~~l~~~ 290 (683)
+.... . .....+.++|+|+++. |+.+... +.|.+|+....... ..+ .........+++.++|+ |.++
T Consensus 180 ~~~~~-~-~~~~p~gl~~spdg~~-lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~ 255 (305)
T 3dr2_A 180 PLQRM-A-DLDHPNGLAFSPDEQT-LYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSS 255 (305)
T ss_dssp CCEEE-E-EESSEEEEEECTTSSE-EEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEEC
T ss_pred cEEEE-e-cCCCCcceEEcCCCCE-EEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEe
Confidence 44332 3 4456788999999986 4444443 78999997654311 111 11233456789999998 4444
Q ss_pred cCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCC
Q psy15995 291 GFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK 338 (683)
Q Consensus 291 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 338 (683)
+.+ .|.+|+. +++.+..+.. .. .+..++|.++++.|+.++.++
T Consensus 256 ~~~-gv~~~~~-~g~~~~~~~~--~~-~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 256 SGT-GVCVFDS-DGQLLGHIPT--PG-TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp CSS-EEEEECT-TSCEEEEEEC--SS-CCCEEEECTTSCEEEEEETTE
T ss_pred cCC-cEEEECC-CCCEEEEEEC--CC-ceeEEEEeCCCCEEEEEcCCe
Confidence 444 4999997 5777777654 22 588999999998888888764
No 240
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=99.30 E-value=4e-06 Score=91.73 Aligned_cols=558 Identities=13% Similarity=0.123 Sum_probs=275.9
Q ss_pred eEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeecc-----ceEEEee--c
Q psy15995 88 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSI-----GFYIASG--D 160 (683)
Q Consensus 88 v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~~l~~~--~ 160 (683)
-+++++-.+| +|+.|+..|.=.+|.+.....- ....+..+..+....+|..+++... .+.++++ +
T Consensus 329 ~ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~-------~~~~~~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g 400 (1158)
T 3ei3_A 329 AECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNE-------QGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAF 400 (1158)
T ss_dssp CSEEEECSTT-EEEEECSSSCEEEEEECSSCCT-------TSCCEEEEEEECCCCSEEEEEEECTTSSSCCEEEEEECCG
T ss_pred ccEEEEECCC-EEEEEEecCCcEEEEEecCCCC-------ccceEEeEeeecCcCCceeEEEEccCCCCCCeEEEEECcC
Confidence 3677777776 7888888887677766543210 0111233445555567777766542 2333333 2
Q ss_pred CCccEEEEecccc-ceeeeccccccCCCeeEEEEc---CCCCeEEEEecCCceEEEEEEccCCCceeeee--cCCcCeEE
Q psy15995 161 ISGKVRIWDTVNK-EHILKNEFHPIGGPIKDIAWS---PDNQRMVVVGEGRERFGHVFMSETGTSVGEIS--GQSKPINS 234 (683)
Q Consensus 161 ~d~~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~ 234 (683)
.+|.+++..-.-+ +......+++ -..++.+... +...++++...+... ++... ++.+.+.. +-......
T Consensus 401 ~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~yLvlS~~~~T~---Vl~i~-~e~veev~~~gf~~~~~T 475 (1158)
T 3ei3_A 401 KEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDDTLVLSFVGQTR---VLMLN-GEEVEETELMGFVDDQQT 475 (1158)
T ss_dssp GGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCCEEEEEETTEEE---EEEEE-TTEEEEECCTTCCSSSCE
T ss_pred CCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCCEEEEECCCCeE---EEEEe-CCcccccccccccCCCCc
Confidence 4678888754322 1122223332 2445555543 234677666555432 22221 22222221 11111111
Q ss_pred EEee--cCCCeEEEEeeCCCeEEEEcCCCCceeeecccc-ccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEecc
Q psy15995 235 CDFK--PSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH-SRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG 311 (683)
Q Consensus 235 ~~~~--~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 311 (683)
+... .++ .++=... ..|++.+....+.+..+... ...|...+.+. .+++.++ ++.+.++++..++......
T Consensus 476 L~~~~l~~~--~ivQVt~-~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~ 549 (1158)
T 3ei3_A 476 FFCGNVAHQ--QLIQITS-ASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISH 549 (1158)
T ss_dssp EEEEEETTT--EEEEEES-SCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred EEEEEcCCC--eEEEEec-CEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecc
Confidence 1111 222 2333333 34666665544445444432 34566666553 3566664 6788888877654332211
Q ss_pred CCccccCeEEEEEccC------CCEEEEEEC-CCcEEEEECCCCceeeEEEecCcceeceEEEEe--cCCEEEEEecCCc
Q psy15995 312 NPAHKGGVYAVAWKPD------GTQLLTASG-DKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLW--QGDYLLTVSLSGF 382 (683)
Q Consensus 312 ~~~~~~~i~~~~~~~~------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~g~ 382 (683)
..-...|.|+++.|. ++++++|.. |++++++++.+.+.+.............+.+.. ...++.+|-.+|.
T Consensus 550 -~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~ 628 (1158)
T 3ei3_A 550 -TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGA 628 (1158)
T ss_dssp -EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSE
T ss_pred -cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCe
Confidence 124568999999763 468899986 999999999987776655544322233333322 3457889999999
Q ss_pred EEEEecCCCC-cce--e-eeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEE-Ee---
Q psy15995 383 ISYLDVNNPS-TPI--R-VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMK-AT--- 454 (683)
Q Consensus 383 i~~~~~~~~~-~~~--~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~-~~--- 454 (683)
+..+.+.... ... + ...+ ..++.-..+...+..-+.+..+....++.-+ ++.... .-....+..++ |+
T Consensus 629 l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s--~l~~~~v~~~~~F~se~ 704 (1158)
T 3ei3_A 629 LFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS--NVNLKEVNYMCPLNSDG 704 (1158)
T ss_dssp EEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE--EBSSSCCCEEEEECCSS
T ss_pred EEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe--ccChHHhceEeccCccc
Confidence 8777665321 111 1 1112 2344444444444333333334444444332 222111 11112232222 22
Q ss_pred -CCeEEEEEcCCeEEEEeCCCCc-ccCCceecCCCCceeeecCC--eEEEEEeceEEEEeCCceeeee------------
Q psy15995 455 -GELLYTCGIDDTIKQVDLSSNA-YSGPEVKLGSQPRGLDIDEN--TLVTVTVKQISIVENGAKVSSL------------ 518 (683)
Q Consensus 455 -~~~l~~~~~d~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~------------ 518 (683)
.+-++.. .++.+++..+.... ......++...++.+...+. .......+. ...+........
T Consensus 705 ~~~g~v~~-~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1158)
T 3ei3_A 705 YPDSLALA-NNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRI-EVQDTSGGTTALRPSASTQALSSS 782 (1158)
T ss_dssp STTEEEEE-CSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEE-EEECSSSSEEESSCCHHHHCSEEE
T ss_pred CCCcEEEE-cCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEec-cccccccccchhhhhhhhhhhhhc
Confidence 3445543 45568888875432 22223345555555554443 222222111 111110000000
Q ss_pred cCCCC-CcEEEEccC---CCEEEEEcCCCcEEEEEcCCCccCcceeecCCcCeeEEEE---CCC-CCEEEEEe-------
Q psy15995 519 PIDYE-PSSISLDHE---HGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSF---SPS-NEYLVASD------- 583 (683)
Q Consensus 519 ~~~~~-~~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~---s~~-~~~l~~~~------- 583 (683)
..... +....-.++ +... .-+.|++.|..+.+......+.....+.+++. ..+ ..++++|.
T Consensus 783 ~~~~~~~~~~~~~~~~~~g~~~----~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e 858 (1158)
T 3ei3_A 783 VSSSKLFSSSTAPHETSFGEEV----EVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE 858 (1158)
T ss_dssp ECCCCCC----------CCCEE----EEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTC
T ss_pred ccccccccccccCchhhcCCce----eeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCC
Confidence 00000 000000000 0000 12457888887777666666666666666653 332 47888875
Q ss_pred ---CCCeEEEEECCCCccccccceeeecccEEEEEecCCCCeEEEeecCCcEEEEeCCCCceeeEeecCCCCCCeeEEEE
Q psy15995 584 ---AHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQW 660 (683)
Q Consensus 584 ---~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~ 660 (683)
..|.|.+|++..+++....... ..++|++++-- +|++||.. ..+|++|++...+.+. ....+. ..|..+..
T Consensus 859 ~~~~~Gri~vf~v~~~kL~lv~~~~-v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~-~~~~~~-~~i~~~~l 932 (1158)
T 3ei3_A 859 AEPKQGRIVVFQYSDGKLQTVAEKE-VKGAVYSMVEF-NGKLLASI--NSTVRLYEWTTEKELR-TECNHY-NNIMALYL 932 (1158)
T ss_dssp SSCCCEEEEEEEEETTEEEEEEEEE-ESSCEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEE-EEEEEC-CCSCEEEE
T ss_pred CCCCceEEEEEEEECCEEEEEEEEE-cCCcCEEEeee-CCEEEEEc--CCEEEEEECCCCceEE-EEeecc-ccEEEEEE
Confidence 3588999999866554443333 56888888744 45544443 4789999998765333 222111 22332222
Q ss_pred c-cCCeEEEeeCCCcEEEEeec
Q psy15995 661 L-DNDLLVSVGQDCNTKIWEIA 681 (683)
Q Consensus 661 ~-~~~~l~s~~~d~~v~vw~~~ 681 (683)
. -+++++.|..-.+|.+...+
T Consensus 933 ~~~~~~I~vgD~~~Sv~~~~y~ 954 (1158)
T 3ei3_A 933 KTKGDFILVGDLMRSVLLLAYK 954 (1158)
T ss_dssp EEETTEEEEEESSBCEEEEEEE
T ss_pred eccCCEEEEEEhhheEEEEEEE
Confidence 2 56688888877777776543
No 241
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.29 E-value=8.8e-10 Score=103.94 Aligned_cols=227 Identities=10% Similarity=0.049 Sum_probs=150.0
Q ss_pred eC--CCCCeEEEec--CCeEEEEeCCCC----ccccccc------C-cccceEEEEECCCCcEEEEecCC------CCEE
Q psy15995 52 GD--PKGKNFLYTN--GNSVIIRNIENP----AISDIYT------E-HSCAVNVAKYSPSGFYIASGDIS------GKVR 110 (683)
Q Consensus 52 ~s--~~~~~l~~~~--~~~i~v~~~~~~----~~~~~~~------~-h~~~v~~~~~s~d~~~las~~~d------g~i~ 110 (683)
++ +++++|..++ ++.|.|+|+.+. +..++++ . ....-..+..+||| .++++..+ |.|.
T Consensus 89 ~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~ 167 (462)
T 2ece_A 89 GKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGIL 167 (462)
T ss_dssp CCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEE
T ss_pred cCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEE
Confidence 37 8999998874 679999998754 4444442 1 11245667889999 66665444 6799
Q ss_pred EEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeec-------------------CCccEEEEecc
Q psy15995 111 IWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGD-------------------ISGKVRIWDTV 171 (683)
Q Consensus 111 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-------------------~d~~i~iwd~~ 171 (683)
+.|..+.+.+.+.+...... .---.+.|+|+++.+++.. ...+|.+||+.
T Consensus 168 vlD~~T~~v~~~~~~~~~~~-----------~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~ 236 (462)
T 2ece_A 168 MLDHYSFEPLGKWEIDRGDQ-----------YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR 236 (462)
T ss_dssp EECTTTCCEEEECCSBCTTC-----------CCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT
T ss_pred EEECCCCeEEEEEccCCCCc-----------cccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC
Confidence 99999998887776442110 1122467899999888874 36899999999
Q ss_pred ccceeeeccccccCCCeeEEEE--cCCCCeEEEEec-----CCceEEEEEEccCCCc--eee--eec-------------
Q psy15995 172 NKEHILKNEFHPIGGPIKDIAW--SPDNQRMVVVGE-----GRERFGHVFMSETGTS--VGE--ISG------------- 227 (683)
Q Consensus 172 ~~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~~~~~-----~~~~~~~~~~~~~~~~--~~~--~~~------------- 227 (683)
+++.+..............+.| +|+++++++++. .... +.++.++.++. ... +..
T Consensus 237 ~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~-V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~ 315 (462)
T 2ece_A 237 KRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSS-IWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKP 315 (462)
T ss_dssp TTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEE-EEEEEEETTEEEEEEEEEECCEECCSSCCGGGGG
T ss_pred CCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCce-EEEEEecCCceeEEEEEeCCCccccccccccccc
Confidence 8876655554322234455655 999999999887 5433 34433333321 000 000
Q ss_pred ---CCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCC---Cceeeeccccc--------------cCeEEEEECCCCCEE
Q psy15995 228 ---QSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP---FKFKMTKQEHS--------------RFVQAVRYSPSGSHF 287 (683)
Q Consensus 228 ---~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~---~~~~~~~~~~~--------------~~v~~~~~~~~~~~l 287 (683)
-......+.++++++++.++.-..+.|.+||+.. .+.+..+.... .....++++|||++|
T Consensus 316 f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~L 395 (462)
T 2ece_A 316 FKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRV 395 (462)
T ss_dssp GTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEE
T ss_pred cccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEE
Confidence 0245789999999998777777789999999752 23333332110 135789999999999
Q ss_pred EEEc
Q psy15995 288 ASAG 291 (683)
Q Consensus 288 ~~~~ 291 (683)
+++.
T Consensus 396 yVaN 399 (462)
T 2ece_A 396 YVTN 399 (462)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9887
No 242
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.27 E-value=9.5e-09 Score=96.99 Aligned_cols=255 Identities=12% Similarity=0.142 Sum_probs=166.6
Q ss_pred cEEEEeccc-----cceeeeccccccCCCeeEEEE-----------c--CCCCeEEEEecCCceEEEEEEccCC----Cc
Q psy15995 164 KVRIWDTVN-----KEHILKNEFHPIGGPIKDIAW-----------S--PDNQRMVVVGEGRERFGHVFMSETG----TS 221 (683)
Q Consensus 164 ~i~iwd~~~-----~~~~~~~~~~~~~~~i~~~~~-----------s--~~~~~l~~~~~~~~~~~~~~~~~~~----~~ 221 (683)
.|.+.|+.. ++.+....++........+.| + +++++|++.+...+. +++++..+. +.
T Consensus 44 ~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~-I~viD~~t~p~~p~~ 122 (462)
T 2ece_A 44 FIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSR-IYIIDTKPNPREPKI 122 (462)
T ss_dssp EEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCC-EEEEECCSCTTSCEE
T ss_pred eEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCe-EEEEECCCCCCCcee
Confidence 355666654 444444444443334444555 7 889999988876654 677777543 34
Q ss_pred eeeee-------cCCcCeEEEEeecCCCeEEEEeeCC------CeEEEEcCCCCceeeecccccc---CeEEEEECCCCC
Q psy15995 222 VGEIS-------GQSKPINSCDFKPSRPFRIITGSED------NTIAVFEGPPFKFKMTKQEHSR---FVQAVRYSPSGS 285 (683)
Q Consensus 222 ~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~ 285 (683)
.+.+. ........+...|++ . ++++..+ +.+.++|..+++.+..+..... .-..+.|+|+++
T Consensus 123 ~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i-~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~ 200 (462)
T 2ece_A 123 IKVIEPEEVKKVSGYSRLHTVHCGPDA-I-YISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNE 200 (462)
T ss_dssp EEEECHHHHHHHHCEEEEEEEEECSSC-E-EEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTT
T ss_pred eeeechhhcccccCCCcccceeECCCe-E-EEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCC
Confidence 44442 111245567788999 3 5565554 7899999999998888763222 234578899999
Q ss_pred EEEEEc-------------------CCCcEEEEeCCCCeeEEeccCCccccCeEEEEE--ccCCCEEEEEE------CCC
Q psy15995 286 HFASAG-------------------FDGKVFLYDGASADLVSELGNPAHKGGVYAVAW--KPDGTQLLTAS------GDK 338 (683)
Q Consensus 286 ~l~~~~-------------------~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~------~dg 338 (683)
.+++.. ...+|.+||+.+++.+.++...........+.| +|+++++++++ .++
T Consensus 201 ~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss 280 (462)
T 2ece_A 201 VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSS 280 (462)
T ss_dssp EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCE
T ss_pred EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCc
Confidence 888874 368999999999988888765322234556666 99999888877 456
Q ss_pred cEEEEECCCCceee--EEEecC-----------------cceeceEEEEecCCEEEEEec-CCcEEEEecCCCCcc--ee
Q psy15995 339 TCKLWDIETKSVVS--EFIMGN-----------------QVEDQQVSCLWQGDYLLTVSL-SGFISYLDVNNPSTP--IR 396 (683)
Q Consensus 339 ~i~iwd~~~~~~~~--~~~~~~-----------------~~~~~~~~~~~~~~~l~~~~~-~g~i~~~~~~~~~~~--~~ 396 (683)
+|.+|....++... .+.... ......+.+++++++|+++.. .+.|.+||+.....+ +.
T Consensus 281 ~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~ 360 (462)
T 2ece_A 281 SIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTG 360 (462)
T ss_dssp EEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEE
T ss_pred eEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEE
Confidence 78777665543211 111111 123567788899999988876 679999998754332 22
Q ss_pred eeeecc--------------ccEEEEEEeCCCCEEEEEe
Q psy15995 397 VIKGHN--------------KPITALALSPDRGTVFTGS 421 (683)
Q Consensus 397 ~~~~~~--------------~~v~~~~~~~~~~~l~~~~ 421 (683)
.+.... ..-..++++|||++|+++.
T Consensus 361 ~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 361 KVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 222110 1257899999999999887
No 243
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.26 E-value=9.9e-11 Score=114.55 Aligned_cols=256 Identities=13% Similarity=0.125 Sum_probs=174.3
Q ss_pred CCCCCeEEEec--CCeEEEEeCCCCcccccccC-cccceEEEEE-C-CCCcEEEEec------------------CCCCE
Q psy15995 53 DPKGKNFLYTN--GNSVIIRNIENPAISDIYTE-HSCAVNVAKY-S-PSGFYIASGD------------------ISGKV 109 (683)
Q Consensus 53 s~~~~~l~~~~--~~~i~v~~~~~~~~~~~~~~-h~~~v~~~~~-s-~d~~~las~~------------------~dg~i 109 (683)
.+||++++... ++.|.+.|+++.+..+.++- ....+..+++ + |++++++.++ .++.+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 45999999874 56899999999987774432 2345789998 5 9999998874 33569
Q ss_pred EEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCc---------------cEEEEeccccc
Q psy15995 110 RIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISG---------------KVRIWDTVNKE 174 (683)
Q Consensus 110 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~---------------~i~iwd~~~~~ 174 (683)
.+.|..+.+...++... .....++++|||+++++.+.+. .|.+.|....+
T Consensus 178 tvID~~t~~v~~qI~Vg---------------g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~ 242 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVS---------------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE 242 (595)
T ss_dssp EEEETTTTEEEEEEEES---------------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred EEEECCCCeEEEEEEeC---------------CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee
Confidence 99999988776665543 2345678999999999887653 24455443322
Q ss_pred eeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccC--CCc-eeeeecCCcCeEEEEeecCCCeEEEEeeCC
Q psy15995 175 HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSET--GTS-VGEISGQSKPINSCDFKPSRPFRIITGSED 251 (683)
Q Consensus 175 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 251 (683)
. +.++|++... .. +.+.+..+ ++. +..+.. .....++.++|||++.++++..+
T Consensus 243 ~-----------------~v~~Gk~~~i--~~----V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s 298 (595)
T 1fwx_A 243 K-----------------AIAAGDYQEL--NG----VKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLS 298 (595)
T ss_dssp H-----------------HHHHTCSEEE--TT----EEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTS
T ss_pred E-----------------eccCCCeeEE--Cc----EEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCC
Confidence 1 2234444433 11 67777776 444 334432 34567899999999988888899
Q ss_pred CeEEEEcCCCCc------------eeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCC----------CeeEEe
Q psy15995 252 NTIAVFEGPPFK------------FKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGAS----------ADLVSE 309 (683)
Q Consensus 252 ~~i~iw~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~----------~~~~~~ 309 (683)
.+|.++|..+.+ ..... .-......++|+|+|...++.-.|++|.+||+.. .+.+..
T Consensus 299 ~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~k 377 (595)
T 1fwx_A 299 PTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDK 377 (595)
T ss_dssp SBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEE
T ss_pred CeEEEEECcccccccccccCcccceEEEc-CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEE
Confidence 999999988653 22222 2335688899999994444566799999999877 456666
Q ss_pred ccCCccccCe-----EEEEEccCCCEEEEEEC---CCc----------EEEEECCCCce
Q psy15995 310 LGNPAHKGGV-----YAVAWKPDGTQLLTASG---DKT----------CKLWDIETKSV 350 (683)
Q Consensus 310 ~~~~~~~~~i-----~~~~~~~~~~~l~~~~~---dg~----------i~iwd~~~~~~ 350 (683)
+.. |..+- .++.++|||++|++... |+. -.++|+..++.
T Consensus 378 idV--~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 378 LDV--HYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp EEC--SSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred eec--ccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 654 33221 22345799999999865 332 17888865553
No 244
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.26 E-value=1e-09 Score=107.45 Aligned_cols=302 Identities=13% Similarity=0.081 Sum_probs=188.5
Q ss_pred EEEEcCCCcEEEEeCCCCeeEEeccCC-------------------------------------ccccCeEEEEEcc---
Q psy15995 287 FASAGFDGKVFLYDGASADLVSELGNP-------------------------------------AHKGGVYAVAWKP--- 326 (683)
Q Consensus 287 l~~~~~dg~i~iw~~~~~~~~~~~~~~-------------------------------------~~~~~i~~~~~~~--- 326 (683)
+.+|+..|.++++-+.+++.+..+... ...+.......+.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 567788889999888877766654220 0012223344544
Q ss_pred --CCCEEEEEEC-CCcEEEEECCCCceeeEEEecCcceeceEEE-E-ecCCEEEEEec------------------CCcE
Q psy15995 327 --DGTQLLTASG-DKTCKLWDIETKSVVSEFIMGNQVEDQQVSC-L-WQGDYLLTVSL------------------SGFI 383 (683)
Q Consensus 327 --~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~------------------~g~i 383 (683)
||+++++... ++.|.+.|+.+.+....+..........+.+ . |+++++++++. ++.+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 7888888766 4569999999999888666555455566665 3 89999998852 3578
Q ss_pred EEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCc---------------EEEEcCCCCCcceeccCCCCcce
Q psy15995 384 SYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGF---------------ITRWNAKTGENDRVQGAGHGNQI 448 (683)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---------------i~~w~~~~~~~~~~~~~~~~~~v 448 (683)
.+.|..+. +....+.--. ....++++|+|+++++.+.+.. |.+.|....+.
T Consensus 178 tvID~~t~-~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~------------ 243 (595)
T 1fwx_A 178 TAVDADKW-EVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK------------ 243 (595)
T ss_dssp EEEETTTT-EEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH------------
T ss_pred EEEECCCC-eEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE------------
Confidence 88888863 3333333212 3466789999999999887642 33333211110
Q ss_pred eEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCce-eeeecCCCCCcEE
Q psy15995 449 NGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAK-VSSLPIDYEPSSI 527 (683)
Q Consensus 449 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 527 (683)
....|+.... +.+.+.|..+.+ +.. ...++....+.++
T Consensus 244 --~v~~Gk~~~i----~~V~VID~~~~~-----------------------------------~~~~~~~Ipvg~~PhGv 282 (595)
T 1fwx_A 244 --AIAAGDYQEL----NGVKVVDGRKEA-----------------------------------SSLFTRYIPIANNPHGC 282 (595)
T ss_dssp --HHHHTCSEEE----TTEEEEECSGGG-----------------------------------CCSSEEEEEEESSCCCE
T ss_pred --eccCCCeeEE----CcEEEEeCcccC-----------------------------------CceeEEEEecCCCceEE
Confidence 0001222222 447777776521 011 3344555578899
Q ss_pred EEccCCCEEEEEc-CCCcEEEEEcCCCcc------C----cceeecCCcCeeEEEECCCCCEEEEEeCCCeEEEEECCC-
Q psy15995 528 SLDHEHGLVAVGG-ADSKVHIYELNNKSL------S----PKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD- 595 (683)
Q Consensus 528 ~~~~~~~~l~~~~-~dg~i~i~d~~~~~~------~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~- 595 (683)
.++|||+++++++ .+.+|.++|+.+.+. . ......-......++|+|+|...++..-|++|.+||+.+
T Consensus 283 ~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a 362 (595)
T 1fwx_A 283 NMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDA 362 (595)
T ss_dssp EECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred EEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHh
Confidence 9999999887765 578899999986531 0 111223446688999999994445667899999999976
Q ss_pred ---------Ccccccccee---eecccEEEEEecCCCCeEEEeec---CCc----------EEEEeCCCCcee
Q psy15995 596 ---------FELAHNKEWG---FHSAKVNCVAWSPDSALVASGSL---DTT----------IIIWSLASPAKH 643 (683)
Q Consensus 596 ---------~~~~~~~~~~---~h~~~v~~~~~s~d~~~l~~~~~---d~~----------v~iw~~~~~~~~ 643 (683)
.+.+...... +|...-..+.++|||++|+++.. |+- -.++|+..++..
T Consensus 363 ~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 363 IRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp HHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred hhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEE
Confidence 2333222221 12222223356899999998654 442 288999655543
No 245
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.25 E-value=3.4e-09 Score=110.10 Aligned_cols=303 Identities=12% Similarity=0.105 Sum_probs=190.8
Q ss_pred CCCeEEEecCCeEEEEeCCCCcccccccCcccc----------e-EEEEECCCCcEEEEecCCCCEEEEeCCCccccccc
Q psy15995 55 KGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA----------V-NVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN 123 (683)
Q Consensus 55 ~~~~l~~~~~~~i~v~~~~~~~~~~~~~~h~~~----------v-~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~ 123 (683)
++..++...++.|+-+|.++++.+-.+...... + ..+++ ++..++.++.|+.|..+|..+|+.+.+.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 455555556788999999999876655432211 0 11222 3557788888999999999999988776
Q ss_pred ccccCCCCcccceeeeeecceeeeEeeccceEEEeec-----CCccEEEEeccccceeeecccccc--------------
Q psy15995 124 EFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGD-----ISGKVRIWDTVNKEHILKNEFHPI-------------- 184 (683)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~-------------- 184 (683)
........ ..+..--...++..++..+ .+|.|..+|..+|+.+........
T Consensus 144 ~~~~~~~~----------~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~ 213 (668)
T 1kv9_A 144 QTTDPAKP----------YSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREA 213 (668)
T ss_dssp ECSCTTSS----------CBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHH
T ss_pred ccCCCCCc----------ceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccc
Confidence 65321100 0011000112444433322 268999999999998876653210
Q ss_pred ---------------CCCeeEEEEcCCCCeEEEEecCCc-----------------eEEEEEEccCCCceeeeec--CC-
Q psy15995 185 ---------------GGPIKDIAWSPDNQRMVVVGEGRE-----------------RFGHVFMSETGTSVGEISG--QS- 229 (683)
Q Consensus 185 ---------------~~~i~~~~~s~~~~~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~--~~- 229 (683)
......+++.|+...+++...+.. ..+..++.++|+.+...+. |.
T Consensus 214 ~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~ 293 (668)
T 1kv9_A 214 AKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDS 293 (668)
T ss_dssp HTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCC
T ss_pred cccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcc
Confidence 011234788888888877765431 1256677788988877764 22
Q ss_pred ------cCeEEEEeecCCC--eEEEEeeCCCeEEEEcCCCCceeeeccccc------------cCe--------------
Q psy15995 230 ------KPINSCDFKPSRP--FRIITGSEDNTIAVFEGPPFKFKMTKQEHS------------RFV-------------- 275 (683)
Q Consensus 230 ------~~v~~~~~~~~~~--~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~------------~~v-------------- 275 (683)
.+.....+..+++ ..++.++.+|.+.++|..+++.+....... .++
T Consensus 294 wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~ 373 (668)
T 1kv9_A 294 WDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVM 373 (668)
T ss_dssp SCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEE
T ss_pred ccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEE
Confidence 2233333334554 248889999999999999998774322111 000
Q ss_pred ----------EEEEECCCCCEEEEEc------------------------------------CCCcEEEEeCCCCeeEEe
Q psy15995 276 ----------QAVRYSPSGSHFASAG------------------------------------FDGKVFLYDGASADLVSE 309 (683)
Q Consensus 276 ----------~~~~~~~~~~~l~~~~------------------------------------~dg~i~iw~~~~~~~~~~ 309 (683)
..++++|+...+++.. .+|.|..||..+++.+..
T Consensus 374 ~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~ 453 (668)
T 1kv9_A 374 WPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWK 453 (668)
T ss_dssp SSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEE
T ss_pred CCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEE
Confidence 1257777766655421 237899999999998877
Q ss_pred ccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCC
Q psy15995 310 LGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGD 372 (683)
Q Consensus 310 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (683)
... ..+.....+...+.++++++.|+.++.||.++++.+.++..........+.+..+++
T Consensus 454 ~~~---~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~ 513 (668)
T 1kv9_A 454 VPY---PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGR 513 (668)
T ss_dssp EEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred ccC---CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCE
Confidence 653 223333344456788999999999999999999999988877655444555444554
No 246
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.22 E-value=6.1e-09 Score=105.81 Aligned_cols=306 Identities=10% Similarity=0.006 Sum_probs=185.6
Q ss_pred CCCeEEEec-CCeEEEEeC-CCCcccccccCccc-ce----------EEEEECCCCcEEEEecCCCCEEEEeCCCccccc
Q psy15995 55 KGKNFLYTN-GNSVIIRNI-ENPAISDIYTEHSC-AV----------NVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL 121 (683)
Q Consensus 55 ~~~~l~~~~-~~~i~v~~~-~~~~~~~~~~~h~~-~v----------~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~ 121 (683)
++..++... ++.|+-+|. ++++.+-.+..... .+ ..+++ ++..++.++.|+.|..+|..+++.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 444445545 678888888 78877654432211 00 11222 35577788889999999999998887
Q ss_pred ccccccCCCCcccceeeeeecceeeeEeeccceEEEeecC-----CccEEEEeccccceeeeccccccC-----------
Q psy15995 122 KNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDI-----SGKVRIWDTVNKEHILKNEFHPIG----------- 185 (683)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~----------- 185 (683)
+........ . ..+..--...++..++.... ++.|..+|..+|+.+.+.......
T Consensus 140 ~~~~~~~~~---~-------~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~ 209 (571)
T 2ad6_A 140 EVEVCDPKV---G-------STLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNS 209 (571)
T ss_dssp EEECCCGGG---T-------CBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTT
T ss_pred EecCCCCCc---c-------ceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccc
Confidence 665432100 0 01111001124444333322 789999999999887765432210
Q ss_pred ------------------------C-CeeEEEEcCCCCeEEEEecCC----------c----eEEEEEEccCCCceeeee
Q psy15995 186 ------------------------G-PIKDIAWSPDNQRMVVVGEGR----------E----RFGHVFMSETGTSVGEIS 226 (683)
Q Consensus 186 ------------------------~-~i~~~~~s~~~~~l~~~~~~~----------~----~~~~~~~~~~~~~~~~~~ 226 (683)
+ ....+++.++...+++...+. + ..+..++.++|+.+...+
T Consensus 210 ~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~ 289 (571)
T 2ad6_A 210 ANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQ 289 (571)
T ss_dssp TCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEE
T ss_pred ccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEec
Confidence 0 012356777766776665321 1 136777888898887765
Q ss_pred cCC--c-------CeEEEEeecCCC--eEEEEeeCCCeEEEEcCCCCceeeeccccc-------------cCe-------
Q psy15995 227 GQS--K-------PINSCDFKPSRP--FRIITGSEDNTIAVFEGPPFKFKMTKQEHS-------------RFV------- 275 (683)
Q Consensus 227 ~~~--~-------~v~~~~~~~~~~--~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-------------~~v------- 275 (683)
... . ...-+....+++ ..++.++.+|.+.++|..+++.+....... .++
T Consensus 290 ~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~ 369 (571)
T 2ad6_A 290 KTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFAT 369 (571)
T ss_dssp SSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCC
T ss_pred CCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCC
Confidence 321 1 111122234564 347778899999999999998776543211 111
Q ss_pred -------------------EEEEECCCCCEEEEEc-------------------------------------CCCcEEEE
Q psy15995 276 -------------------QAVRYSPSGSHFASAG-------------------------------------FDGKVFLY 299 (683)
Q Consensus 276 -------------------~~~~~~~~~~~l~~~~-------------------------------------~dg~i~iw 299 (683)
..++++|+...+++.. .+|.|..|
T Consensus 370 ~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~ 449 (571)
T 2ad6_A 370 RMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAF 449 (571)
T ss_dssp CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEE
T ss_pred CCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEE
Confidence 2357788877776653 34789999
Q ss_pred eCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEE
Q psy15995 300 DGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLL 375 (683)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 375 (683)
|..+++.+.+... ...+....+...+..++.++.|+.++.+|.++++.+.++..........+.+..+++.++
T Consensus 450 D~~tG~~~W~~~~---~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 450 DLTTGKAKWTKWE---KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp CTTTCCEEEEEEE---SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ECCCCCEEEEecC---CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEE
Confidence 9999998877653 222333233334667888999999999999999999998877655444444445555333
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.20 E-value=3.2e-08 Score=90.57 Aligned_cols=253 Identities=9% Similarity=0.003 Sum_probs=158.8
Q ss_pred CCeEEEecCCeEEEEeCCCCccc-----ccccCcccceEEEEECCCCcEEE-EecCCCCEEEEeCCCcccccccccccCC
Q psy15995 56 GKNFLYTNGNSVIIRNIENPAIS-----DIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDTVNKEHILKNEFHPIG 129 (683)
Q Consensus 56 ~~~l~~~~~~~i~v~~~~~~~~~-----~~~~~h~~~v~~~~~s~d~~~la-s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 129 (683)
|++|.++..+.|..+++++.... ..+......+..++|+++++.|. +-..++.|..+++...........
T Consensus 1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~---- 76 (267)
T 1npe_A 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ---- 76 (267)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT----
T ss_pred CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEEC----
Confidence 45777777779999998876532 11222345678999999765555 445677899999876532111110
Q ss_pred CCcccceeeeeecceeeeEeeccc-eEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCC-
Q psy15995 130 GPIKDIGTLLSLTSIRNILVLSIG-FYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR- 207 (683)
Q Consensus 130 ~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~- 207 (683)
.......+++.+++ ...++-...+.|.++++........ ..........++++|++..++++....
T Consensus 77 ----------~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~--~~~~~~~P~~i~vd~~~g~lyv~~~~~~ 144 (267)
T 1npe_A 77 ----------DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL--FDTGLVNPRGIVTDPVRGNLYWTDWNRD 144 (267)
T ss_dssp ----------TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE--ECSSCSSEEEEEEETTTTEEEEEECCSS
T ss_pred ----------CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE--EECCCCCccEEEEeeCCCEEEEEECCCC
Confidence 01356789999865 4455556678899999875432111 111124678999999888877776542
Q ss_pred ceEEEEEEccCCCceeeee-cCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCE
Q psy15995 208 ERFGHVFMSETGTSVGEIS-GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH 286 (683)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 286 (683)
...+..+..+ +.....+. ........+++++++..++++-...+.|.+++............ ......++.. +..
T Consensus 145 ~~~I~~~~~d-g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~ 220 (267)
T 1npe_A 145 NPKIETSHMD-GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKN 220 (267)
T ss_dssp SCEEEEEETT-SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTE
T ss_pred CcEEEEEecC-CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCE
Confidence 2234445544 33323322 33456789999998876667777788999999875443333322 2334566654 444
Q ss_pred EEEE-cCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCC
Q psy15995 287 FASA-GFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGT 329 (683)
Q Consensus 287 l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 329 (683)
|+.+ ...+.|..+|..+++.+..+.. +.......+++.|++.
T Consensus 221 lyva~~~~~~v~~~d~~~g~~~~~i~~-g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 221 LYYTDWKTNSVIAMDLAISKEMDTFHP-HKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEECC-SSCCCCCCEEEECSCC
T ss_pred EEEEECCCCeEEEEeCCCCCceEEEcc-ccccccceeeecCccC
Confidence 5444 4568999999999998888753 1222467788887653
No 248
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.20 E-value=6.6e-06 Score=84.16 Aligned_cols=408 Identities=9% Similarity=-0.020 Sum_probs=224.0
Q ss_pred CCCeEEEeeCCCCCeEEEe--cCCeEEEEeCCCCcc-cccccCcccceEEEEECCCCcEE-EEecCCCCEEEEeCCCccc
Q psy15995 44 RGQPIVLGGDPKGKNFLYT--NGNSVIIRNIENPAI-SDIYTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEH 119 (683)
Q Consensus 44 ~~~~~~~~~s~~~~~l~~~--~~~~i~v~~~~~~~~-~~~~~~h~~~v~~~~~s~d~~~l-as~~~dg~i~iwd~~~~~~ 119 (683)
-..+..+++++.++.|.++ ..+.|..+++++... ...+...-.....+++.+.++.| ++-...+.|.+.++.....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 3467899999988888877 367899999876642 22333333578899999965555 4555678899999876432
Q ss_pred ccccccccCCCCcccceeeeeecceeeeEeeccceEEEeec--CCccEEEEeccccceeeeccccccCCCeeEEEEcCCC
Q psy15995 120 ILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGD--ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDN 197 (683)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 197 (683)
..... . .......+++.|.+.+|.... ..+.|...++........ ....-.....+++++++
T Consensus 119 ~~l~~-~-------------~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l--~~~~~~~P~Glald~~~ 182 (619)
T 3s94_A 119 KVLFW-Q-------------ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII--INSEIYWPNGLTLDYEE 182 (619)
T ss_dssp EEEEC-S-------------SCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE--ECSSCSSEEEEEEETTT
T ss_pred EEEEe-C-------------CCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEE--EeCCCCCCcEEEEEccC
Confidence 11111 1 114567889998654444433 245666666654322111 11123567899999998
Q ss_pred CeEEEEecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccc-----
Q psy15995 198 QRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS----- 272 (683)
Q Consensus 198 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~----- 272 (683)
+.|+.+...... +...+.+.........+.......+++..+ .++++-...+.|...|..+++....+....
T Consensus 183 ~~LY~aD~~~~~-I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~ 259 (619)
T 3s94_A 183 QKLYWADAKLNF-IHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMD 259 (619)
T ss_dssp TEEEEEETTTCC-EEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSE
T ss_pred CEEEEEeCCCCe-EEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcE
Confidence 888888665432 444444322221112212222345666544 346666667788888866554322211100
Q ss_pred --------------------cCe--EEE---------EECC-------CC-------C-EEEEEcCCCcEEEEeCCCCee
Q psy15995 273 --------------------RFV--QAV---------RYSP-------SG-------S-HFASAGFDGKVFLYDGASADL 306 (683)
Q Consensus 273 --------------------~~v--~~~---------~~~~-------~~-------~-~l~~~~~dg~i~iw~~~~~~~ 306 (683)
+.. .|+ +..| |+ + +|+.+. .+.|+..++.....
T Consensus 260 i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~-~~~i~~i~l~~~~~ 338 (619)
T 3s94_A 260 IHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLAR-RTDLRRISLDTPDF 338 (619)
T ss_dssp EEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEE-SSCEEEEESSSTTC
T ss_pred EEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEc-ccceEEEecCCCcc
Confidence 000 111 0111 11 1 233332 35566666655432
Q ss_pred EE-eccCCccccCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEE-ecCCcE
Q psy15995 307 VS-ELGNPAHKGGVYAVAWKPDGTQLLTAS-GDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTV-SLSGFI 383 (683)
Q Consensus 307 ~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~i 383 (683)
.. .+.. ..-..+.+++|.+.+..|+.+. ..+.|+.+++..... ..+....-.....+++.+.+..|+.+ ...+.|
T Consensus 339 ~~~~~~~-~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~-~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I 416 (619)
T 3s94_A 339 TDIVLQL-EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS-QFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRI 416 (619)
T ss_dssp CCEECCC-SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred ceeEEec-cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc-EEEEECCCCCcCceEEecccCcEEEEeCCCCcE
Confidence 11 1111 1234578899998666666554 467888888875433 23333333455678888755555444 456789
Q ss_pred EEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeC--CCcEEEEcCCCCCcceeccCCCCcceeEEEEe--CCeEE
Q psy15995 384 SYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSH--DGFITRWNAKTGENDRVQGAGHGNQINGMKAT--GELLY 459 (683)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 459 (683)
.+.++..... .......-....++++.|....|+.+.. .+.|...++......... ...-.....++++ ++.|+
T Consensus 417 ~v~~~~G~~~-~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~-~~~l~~P~GlalD~~~~~LY 494 (619)
T 3s94_A 417 EVTRLNGTMR-KILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLV-NTSLGWPNGLALDYDEGKIY 494 (619)
T ss_dssp EEEETTSCSC-EEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSSCSCEEEEEEETTTTEEE
T ss_pred EEEeCCCCeE-EEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEE-eCCCCCCeeeEEcccCCEEE
Confidence 9988875432 1222223456889999997666665543 356777776544332222 2233455667776 55665
Q ss_pred EEE-cCCeEEEEeCCCC
Q psy15995 460 TCG-IDDTIKQVDLSSN 475 (683)
Q Consensus 460 ~~~-~d~~i~~~~~~~~ 475 (683)
.+. ..+.|..+++...
T Consensus 495 ~aD~~~~~I~~~~~dG~ 511 (619)
T 3s94_A 495 WGDAKTDKIEVMNTDGT 511 (619)
T ss_dssp EEETTTTEEEEEESSSC
T ss_pred EEECCCCEEEEEecCCC
Confidence 554 4467888887653
No 249
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.19 E-value=1.3e-08 Score=102.93 Aligned_cols=306 Identities=13% Similarity=0.091 Sum_probs=185.6
Q ss_pred CCCeEEEec-CCeEEEEeC-CCCcccccccCccc-----------ceEEEEECCCCcE----EEEecCCCCEEEEeCCCc
Q psy15995 55 KGKNFLYTN-GNSVIIRNI-ENPAISDIYTEHSC-----------AVNVAKYSPSGFY----IASGDISGKVRIWDTVNK 117 (683)
Q Consensus 55 ~~~~l~~~~-~~~i~v~~~-~~~~~~~~~~~h~~-----------~v~~~~~s~d~~~----las~~~dg~i~iwd~~~~ 117 (683)
++..++... ++.|+-+|. ++++.+-.+..... .-..++++|++.. |+.++.|+.|.-+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 444444445 677888888 78877654432211 0123456443333 788888999999999999
Q ss_pred ccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeec-----CCccEEEEeccccceeeeccccccC-------
Q psy15995 118 EHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGD-----ISGKVRIWDTVNKEHILKNEFHPIG------- 185 (683)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~------- 185 (683)
+.+.+........ . ..+..--...++..++..+ .++.|+-+|..+|+.+.+.......
T Consensus 142 ~~~W~~~~~~~~~-----~-----~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p 211 (599)
T 1w6s_A 142 ETVWKVENSDIKV-----G-----STLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLAS 211 (599)
T ss_dssp CEEEEEECCCGGG-----T-----CBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCT
T ss_pred CEEEeecCCCCCc-----c-----ceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccc
Confidence 8887655432100 0 0111111112444443332 3789999999999987765543210
Q ss_pred ----------------------------C-CeeEEEEcCCCCeEEEEecCC--------------ceEEEEEEccCCCce
Q psy15995 186 ----------------------------G-PIKDIAWSPDNQRMVVVGEGR--------------ERFGHVFMSETGTSV 222 (683)
Q Consensus 186 ----------------------------~-~i~~~~~s~~~~~l~~~~~~~--------------~~~~~~~~~~~~~~~ 222 (683)
+ .-..+++.++...+++...+. ...+..++.++|+.+
T Consensus 212 ~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~ 291 (599)
T 1w6s_A 212 DFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAK 291 (599)
T ss_dssp TTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEE
T ss_pred ccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCcee
Confidence 0 001356667777777766542 123677888889888
Q ss_pred eeeecCCcC---------eEEEEee-cCCC--eEEEEeeCCCeEEEEcCCCCceeeeccccc-------------cCe--
Q psy15995 223 GEISGQSKP---------INSCDFK-PSRP--FRIITGSEDNTIAVFEGPPFKFKMTKQEHS-------------RFV-- 275 (683)
Q Consensus 223 ~~~~~~~~~---------v~~~~~~-~~~~--~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-------------~~v-- 275 (683)
..++..... ..-+... .+++ ..++.++.+|.+.++|..+++.+....... .++
T Consensus 292 W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~ 371 (599)
T 1w6s_A 292 FGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRD 371 (599)
T ss_dssp EEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEEC
T ss_pred eEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeec
Confidence 776643221 1112222 4552 347778899999999999998776543110 111
Q ss_pred ------------------------EEEEECCCCCEEEEEc---------------------------------------C
Q psy15995 276 ------------------------QAVRYSPSGSHFASAG---------------------------------------F 292 (683)
Q Consensus 276 ------------------------~~~~~~~~~~~l~~~~---------------------------------------~ 292 (683)
..++++|+..++++.. .
T Consensus 372 ~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~ 451 (599)
T 1w6s_A 372 PEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEG 451 (599)
T ss_dssp GGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBC
T ss_pred cccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCC
Confidence 1356677666554421 3
Q ss_pred CCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCC
Q psy15995 293 DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGD 372 (683)
Q Consensus 293 dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (683)
.|.|..||+.+++.+..... ..+...-.....+.+++.++.|+.++.+|.++++.+.++..........+.+..+++
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~---~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~ 528 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKME---RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGT 528 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEE---SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred cCeEEEEECCCCCEEeEecC---CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCE
Confidence 47899999999988877642 111211112234677888999999999999999999999877666555565555665
Q ss_pred E
Q psy15995 373 Y 373 (683)
Q Consensus 373 ~ 373 (683)
.
T Consensus 529 q 529 (599)
T 1w6s_A 529 Q 529 (599)
T ss_dssp E
T ss_pred E
Confidence 3
No 250
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.13 E-value=2.1e-08 Score=104.27 Aligned_cols=292 Identities=13% Similarity=0.103 Sum_probs=173.6
Q ss_pred CCEEEEEcCCCcEEEEeCCCCeeEEeccCCcccc--------Ce-EEEEEccCCCEEEEEECCCcEEEEECCCCceeeEE
Q psy15995 284 GSHFASAGFDGKVFLYDGASADLVSELGNPAHKG--------GV-YAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEF 354 (683)
Q Consensus 284 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~--------~i-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 354 (683)
+..+++++.++.|..+|..+|+.+..+....... .+ ..+++ .+..++.++.|+.|..+|..+++.+.++
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 4467777778999999999999888775421100 00 11222 2567888888999999999999998887
Q ss_pred EecCcceeceE--EEEecCCEEEEEec------CCcEEEEecCCCCcceeeeee--------------------------
Q psy15995 355 IMGNQVEDQQV--SCLWQGDYLLTVSL------SGFISYLDVNNPSTPIRVIKG-------------------------- 400 (683)
Q Consensus 355 ~~~~~~~~~~~--~~~~~~~~l~~~~~------~g~i~~~~~~~~~~~~~~~~~-------------------------- 400 (683)
........... ...-.+..++++.. +|.+..+|..++...-+....
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w 223 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence 66422111111 11113556666654 488999998875543222110
Q ss_pred ----ccccEEEEEEeCCCCEEEEEeCCCc-------------------EEEEcCCCCCcceeccCCCCcceeEEEEeCCe
Q psy15995 401 ----HNKPITALALSPDRGTVFTGSHDGF-------------------ITRWNAKTGENDRVQGAGHGNQINGMKATGEL 457 (683)
Q Consensus 401 ----~~~~v~~~~~~~~~~~l~~~~~dg~-------------------i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 457 (683)
+......+++.|+...++.+..++. |..+|..+++..-.....+..
T Consensus 224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~----------- 292 (668)
T 1kv9_A 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGD----------- 292 (668)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTC-----------
T ss_pred eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCc-----------
Confidence 0111124678888888888877653 444444444332222110000
Q ss_pred EEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCC---
Q psy15995 458 LYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHG--- 534 (683)
Q Consensus 458 l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 534 (683)
.|+.. ...++....+..+++
T Consensus 293 -----------~wd~~----------------------------------------------~~~~~~~~d~~~~G~~~~ 315 (668)
T 1kv9_A 293 -----------SWDFT----------------------------------------------ATQQITLAELNIDGKPRK 315 (668)
T ss_dssp -----------CSCCC----------------------------------------------CCSCEEEEEEEETTEEEE
T ss_pred -----------ccccc----------------------------------------------CCCCcEEEEeccCCcEEE
Confidence 00000 001111122223454
Q ss_pred EEEEEcCCCcEEEEEcCCCccCcceeecC-----------Cc------------------------CeeEEEECCCCCEE
Q psy15995 535 LVAVGGADSKVHIYELNNKSLSPKAELDH-----------LG------------------------PVTDCSFSPSNEYL 579 (683)
Q Consensus 535 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------~~------------------------~v~~~~~s~~~~~l 579 (683)
.++.++.+|.++++|..+++++....... .. .-..++++|+...+
T Consensus 316 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~ 395 (668)
T 1kv9_A 316 VLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLV 395 (668)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEE
T ss_pred EEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEE
Confidence 68888889999999998887652221110 00 01126778876666
Q ss_pred EEE------------------------------------eCCCeEEEEECCCCccccccceeeecccEEEEEecCCCCeE
Q psy15995 580 VAS------------------------------------DAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALV 623 (683)
Q Consensus 580 ~~~------------------------------------~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l 623 (683)
+.. ..+|.|..||+.+++.+-.... ..+.....+...+.++
T Consensus 396 yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~~~~~t~gg~v 472 (668)
T 1kv9_A 396 YIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY---PTHWNGGTLSTAGNLV 472 (668)
T ss_dssp EEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEE
T ss_pred EEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC---CCCCcCceeEeCCCEE
Confidence 542 1238899999999998755442 2334444455578899
Q ss_pred EEeecCCcEEEEeCCCCceeeEeec
Q psy15995 624 ASGSLDTTIIIWSLASPAKHIIIKN 648 (683)
Q Consensus 624 ~~~~~d~~v~iw~~~~~~~~~~~~~ 648 (683)
++++.|+.++.||.++++.+..+..
T Consensus 473 f~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 473 FQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEECCcccchhhhhhcChhheEecC
Confidence 9999999999999999999988765
No 251
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.11 E-value=3.1e-11 Score=116.01 Aligned_cols=190 Identities=14% Similarity=0.027 Sum_probs=107.8
Q ss_pred CCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccce
Q psy15995 96 SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEH 175 (683)
Q Consensus 96 d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~ 175 (683)
++.++++++.||.|..||..+|+.+.++... .+.+..+..++..+++++.|+.|+.||.++++.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~----------------~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~ 71 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKED----------------PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG 71 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEECC----------------CSCCCC-----CCEEECTTTCCEEEC-----CC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecCC----------------CceecceEcCCCEEEEeCCCCEEEEEECCCCce
Confidence 5778999999999999999999888776541 122333456777888888999999999998876
Q ss_pred eeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEE
Q psy15995 176 ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIA 255 (683)
Q Consensus 176 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 255 (683)
+........ ..+ .-+| + +..++ .+++++.++.++
T Consensus 72 ~w~~~~~~~-~~~---~~sp------------------------------------~----~~~~~--~v~~g~~dg~v~ 105 (369)
T 2hz6_A 72 LTKLPFTIP-ELV---QASP------------------------------------C----RSSDG--ILYMGKKQDIWY 105 (369)
T ss_dssp SEECSCCHH-HHH---TTCS------------------------------------C----C-------CCCCEEEEEEE
T ss_pred eeeeeccCc-ccc---ccCc------------------------------------e----EecCC--EEEEEeCCCEEE
Confidence 544332210 000 0000 0 00111 366777889999
Q ss_pred EEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCC---CEEE
Q psy15995 256 VFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDG---TQLL 332 (683)
Q Consensus 256 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~ 332 (683)
.||..+++.+..+..+. ...++|++..+++++.++.|+.||.++++.+..+.. .. ....++.++. ..++
T Consensus 106 a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~--~~--~~~~~~~~~~~~~~~v~ 177 (369)
T 2hz6_A 106 VIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATY--FD--YAASLPEDDVDYKMSHF 177 (369)
T ss_dssp EECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEE--EE--ECCBCCCCCTTCCCCEE
T ss_pred EEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEec--cc--ccCccccCCccccceEE
Confidence 99999998877766543 234567888899999999999999999987666542 11 1222333322 5677
Q ss_pred EEECCCcEEEEECCCCceeeEEE
Q psy15995 333 TASGDKTCKLWDIETKSVVSEFI 355 (683)
Q Consensus 333 ~~~~dg~i~iwd~~~~~~~~~~~ 355 (683)
+++.+|.+..||..+++.+.++.
T Consensus 178 ~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 178 VSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp EEETSCEEEEECTTTCCEEEEEE
T ss_pred EECCCCEEEEEECCCCcEEEEec
Confidence 88899999999999998876654
No 252
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.09 E-value=1.6e-10 Score=111.13 Aligned_cols=256 Identities=9% Similarity=-0.085 Sum_probs=135.4
Q ss_pred CCCeEEEe-cCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcc
Q psy15995 55 KGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 133 (683)
Q Consensus 55 ~~~~l~~~-~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 133 (683)
++..++++ .++.|+.||.++++.+..+.. +.+.+..+..+++.+++++.||.|+.||..+++.+.+...+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~----- 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP----- 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHH-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCc-----
Confidence 34555554 678999999999998877765 5666666677888888888999999999999887655543310
Q ss_pred cceeeeeeccee-eeEeeccceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEE
Q psy15995 134 DIGTLLSLTSIR-NILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGH 212 (683)
Q Consensus 134 ~~~~~~~~~~i~-~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~ 212 (683)
..+. ...+. ++..+++++.++.|+.||..+|+.+....... ...++|++..+++++.+. .+.
T Consensus 81 --------~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~------~~~~~p~~~~v~~~~~dg--~v~ 143 (369)
T 2hz6_A 81 --------ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF------ADSLSPSTSLLYLGRTEY--TIT 143 (369)
T ss_dssp --------HHHTTCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEE--EEE
T ss_pred --------cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC------cccccccCCEEEEEecCC--EEE
Confidence 0011 11111 34577888889999999999998776554332 235567888888776542 256
Q ss_pred EEEccCCCceeeeecCCcCeEEEEeecCC---CeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEE--
Q psy15995 213 VFMSETGTSVGEISGQSKPINSCDFKPSR---PFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHF-- 287 (683)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-- 287 (683)
.++.++|+.+..+..+. .....+.++. . .+++++.||.+..||..+++.+.........+....+++++...
T Consensus 144 a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~-~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~~v~ 220 (369)
T 2hz6_A 144 MYDTKTRELRWNATYFD--YAASLPEDDVDYKM-SHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLRKVM 220 (369)
T ss_dssp CCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCC-CEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCEEEC
T ss_pred EEECCCCCEEEeEeccc--ccCccccCCccccc-eEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceEecc
Confidence 66667888776654321 1223333321 3 37788999999999999998877665332222334455555421
Q ss_pred --EEEcCCCcEEEEeCCCCe----eEEeccCCccccCeEEEEEcc--CCCEEEEEECCCcEEEEECC
Q psy15995 288 --ASAGFDGKVFLYDGASAD----LVSELGNPAHKGGVYAVAWKP--DGTQLLTASGDKTCKLWDIE 346 (683)
Q Consensus 288 --~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~iwd~~ 346 (683)
+.+ ++.++.+|..+|+ .+...... ..+. +| .+..++.++.+|.+..++..
T Consensus 221 ~~~~~--~~~l~~ld~~tG~~~~~~~W~~~~~---~~~~----sp~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 221 HINVA--VETLRYLTFMSGEVGRITKWKYPFP---KETE----AKSKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp CEEEE--HHHHHHHHHHHHHHHHHHTSCCCCC---CHHH----HHHHSEEEECBEECSSCEECCEEE
T ss_pred ceeec--ccceeeeehhcCCcccceeeeeccC---cccc----ccccccceEEEecccCCEEecCcc
Confidence 112 3445566665555 33333221 1110 12 24467777777777777654
No 253
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.08 E-value=8.5e-08 Score=97.43 Aligned_cols=108 Identities=10% Similarity=0.082 Sum_probs=70.1
Q ss_pred CCEEEEEcC-CCcEEEEeC-CCCeeEEeccCCcccc--------C-eEEEEEccCCCEEEEEECCCcEEEEECCCCceee
Q psy15995 284 GSHFASAGF-DGKVFLYDG-ASADLVSELGNPAHKG--------G-VYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVS 352 (683)
Q Consensus 284 ~~~l~~~~~-dg~i~iw~~-~~~~~~~~~~~~~~~~--------~-i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 352 (683)
+..+++++. ++.|..+|. .+|+.+.......... . -..++. .+..++.++.|+.+..+|..+++.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 446667777 789999999 8999887765422110 0 011223 35678888889999999999999988
Q ss_pred EEEecCcceeceEE--EEecCCEEEEEec------CCcEEEEecCCCCc
Q psy15995 353 EFIMGNQVEDQQVS--CLWQGDYLLTVSL------SGFISYLDVNNPST 393 (683)
Q Consensus 353 ~~~~~~~~~~~~~~--~~~~~~~l~~~~~------~g~i~~~~~~~~~~ 393 (683)
+...........+. ....+..++++.. ++.+..+|..++..
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~ 188 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGEL 188 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCE
T ss_pred EecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcE
Confidence 77654321100111 1113556777765 68999999987554
No 254
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.07 E-value=1.4e-07 Score=95.46 Aligned_cols=111 Identities=12% Similarity=0.074 Sum_probs=71.2
Q ss_pred CCEEEEEcC-CCcEEEEeC-CCCeeEEeccCCcccc---------CeEEEEEccCCCE----EEEEECCCcEEEEECCCC
Q psy15995 284 GSHFASAGF-DGKVFLYDG-ASADLVSELGNPAHKG---------GVYAVAWKPDGTQ----LLTASGDKTCKLWDIETK 348 (683)
Q Consensus 284 ~~~l~~~~~-dg~i~iw~~-~~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~----l~~~~~dg~i~iwd~~~~ 348 (683)
+..+++++. ++.|.-+|. .+|+.+.+........ ....+++.|.+.. ++.++.|+.|..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 446777777 889999999 8999887775422110 0123455444444 888888999999999999
Q ss_pred ceeeEEEecCcceeceEE--EEecCCEEEEEec------CCcEEEEecCCCCcc
Q psy15995 349 SVVSEFIMGNQVEDQQVS--CLWQGDYLLTVSL------SGFISYLDVNNPSTP 394 (683)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~------~g~i~~~~~~~~~~~ 394 (683)
+.+.+...........+. ..-.+..++++.. +|.++.+|..++...
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~ 195 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQV 195 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred CEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEE
Confidence 998877654311000110 0112456666653 789999999876543
No 255
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.07 E-value=5e-07 Score=82.56 Aligned_cols=256 Identities=11% Similarity=-0.019 Sum_probs=150.3
Q ss_pred CcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccce-EEEeecCCccEEEEeccccce
Q psy15995 97 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGF-YIASGDISGKVRIWDTVNKEH 175 (683)
Q Consensus 97 ~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~d~~i~iwd~~~~~~ 175 (683)
|++|..+.. +.|+.+++...... .+...+ . .......+..+++.+++. ..++-...+.|..++...+..
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~-~~~~~~-------~-~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~ 70 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMK-KTEAKA-------F-LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP 70 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBC-GGGCEE-------E-EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC
T ss_pred CcEEEEEcC-CeEEEEEecCcccc-ccccee-------e-ecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc
Confidence 455666554 47888887654321 100000 0 000114567899999654 455555678999999876542
Q ss_pred eeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeC--CCe
Q psy15995 176 ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSE--DNT 253 (683)
Q Consensus 176 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--d~~ 253 (683)
.. ...........+++.|++..++++...... +.+++.+.................++++|++..++++... .+.
T Consensus 71 ~~--~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~-I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~ 147 (267)
T 1npe_A 71 TT--IIRQDLGSPEGIALDHLGRTIFWTDSQLDR-IEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPK 147 (267)
T ss_dssp EE--EECTTCCCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCE
T ss_pred EE--EEECCCCCccEEEEEecCCeEEEEECCCCE-EEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcE
Confidence 21 111222467899999998888887765443 4555555332222222223567899999976653444433 468
Q ss_pred EEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEE-cCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEE
Q psy15995 254 IAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASA-GFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLL 332 (683)
Q Consensus 254 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 332 (683)
|..++...................+++++++..|+.+ ...+.|..++.........+. .......++.. +..++
T Consensus 148 I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~---~~~~P~gi~~d--~~~ly 222 (267)
T 1npe_A 148 IETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE---GLQYPFAVTSY--GKNLY 222 (267)
T ss_dssp EEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE---CCCSEEEEEEE--TTEEE
T ss_pred EEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec---CCCCceEEEEe--CCEEE
Confidence 8888765432222222233467899999987766554 456789999987654333332 12234566654 44555
Q ss_pred EEE-CCCcEEEEECCCCceeeEEEecCcceeceEEEEec
Q psy15995 333 TAS-GDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQ 370 (683)
Q Consensus 333 ~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (683)
.+. ..+.|..+|..+++.+..+..........+.+.++
T Consensus 223 va~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 223 YTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp EEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred EEECCCCeEEEEeCCCCCceEEEccccccccceeeecCc
Confidence 554 56889999999998887776544333444554443
No 256
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.06 E-value=1.8e-07 Score=95.07 Aligned_cols=308 Identities=15% Similarity=0.148 Sum_probs=186.2
Q ss_pred CCCeEEEecCCeEEEEeCCCCcccccccCcccce---------EEEEECCCCcEEEEecCCCCEEEEeCCCccccccccc
Q psy15995 55 KGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAV---------NVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 125 (683)
Q Consensus 55 ~~~~l~~~~~~~i~v~~~~~~~~~~~~~~h~~~v---------~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~ 125 (683)
+++.++.+..+.|+-+|.++++.+-.+......- ..+++ .+..++.++.|+.|.-+|..+|+.+.+...
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 4555555553558889999988765554332110 11222 345677788899999999999998877654
Q ss_pred ccCCCCcccceeeeeecceeeeEeecc---ce-EEEeec------CCccEEEEeccccceeeecccccc-----------
Q psy15995 126 HPIGGPIKDIGTLLSLTSIRNILVLSI---GF-YIASGD------ISGKVRIWDTVNKEHILKNEFHPI----------- 184 (683)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~-~l~~~~------~d~~i~iwd~~~~~~~~~~~~~~~----------- 184 (683)
...... . .......+..+ |+ .+++++ .++.|.-+|..+|+.+........
T Consensus 146 ~~~~~~---~------~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~ 216 (582)
T 1flg_A 146 ADHGAG---Y------TMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDST 216 (582)
T ss_dssp SCGGGT---C------BCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEE
T ss_pred CCCCcC---c------ccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccc
Confidence 321000 0 00001112212 22 455544 378999999999988765433100
Q ss_pred ----------------------------CCCeeEEEEcCCCCeEEEEecC-----------C-------c----eEEEEE
Q psy15995 185 ----------------------------GGPIKDIAWSPDNQRMVVVGEG-----------R-------E----RFGHVF 214 (683)
Q Consensus 185 ----------------------------~~~i~~~~~s~~~~~l~~~~~~-----------~-------~----~~~~~~ 214 (683)
...-..+++.|+...+++...+ . + ..+..+
T Consensus 217 ~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~Al 296 (582)
T 1flg_A 217 VTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGV 296 (582)
T ss_dssp ESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEE
T ss_pred cccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEE
Confidence 0001245677777777776642 1 1 246677
Q ss_pred EccCCCceeeeec--CCc----CeE---EEEee-cCCC--eEEEEeeCCCeEEEEcCCCCceeeeccccc----------
Q psy15995 215 MSETGTSVGEISG--QSK----PIN---SCDFK-PSRP--FRIITGSEDNTIAVFEGPPFKFKMTKQEHS---------- 272 (683)
Q Consensus 215 ~~~~~~~~~~~~~--~~~----~v~---~~~~~-~~~~--~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~---------- 272 (683)
+.++|+.+..++. |.. .+. -+... .+++ ..++.++.+|.++++|..+++.+.......
T Consensus 297 D~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~ 376 (582)
T 1flg_A 297 DPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDL 376 (582)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECT
T ss_pred eCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccc
Confidence 7788988877653 321 111 11221 3553 258889999999999999998776543221
Q ss_pred ---cCe--------------------------------EEEEECCCCCEEEEEc--------------------------
Q psy15995 273 ---RFV--------------------------------QAVRYSPSGSHFASAG-------------------------- 291 (683)
Q Consensus 273 ---~~v--------------------------------~~~~~~~~~~~l~~~~-------------------------- 291 (683)
.++ ..++++|+...+++..
T Consensus 377 ~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 456 (582)
T 1flg_A 377 KTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFR 456 (582)
T ss_dssp TTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceecccee
Confidence 000 1346677655554432
Q ss_pred -------CCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceece
Q psy15995 292 -------FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQ 364 (683)
Q Consensus 292 -------~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 364 (683)
.+|.|..||+.+++.+.+... ..++..-.....+.+++.++.|+.++.||.++++.+.++..........
T Consensus 457 ~~p~~~~~~G~l~A~D~~tG~~~W~~~~---~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P 533 (582)
T 1flg_A 457 IKRMYDDHVGSLRAMDPVSGKVVWEHKE---HLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP 533 (582)
T ss_dssp EEESCSSCSEEEEEECTTTCCEEEEEEE---SSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred ecCCCCCCcceEEEEECCCCCEEEEecC---CCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCc
Confidence 257899999999998877653 1122221122246678889999999999999999999998877666666
Q ss_pred EEEEecCCEEEE
Q psy15995 365 VSCLWQGDYLLT 376 (683)
Q Consensus 365 ~~~~~~~~~l~~ 376 (683)
+.+..+++..++
T Consensus 534 ~~y~~~G~qYv~ 545 (582)
T 1flg_A 534 ITWEQDGEQYLG 545 (582)
T ss_dssp EEEEETTEEEEE
T ss_pred eEEEECCEEEEE
Confidence 666666654433
No 257
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.05 E-value=2.6e-08 Score=88.29 Aligned_cols=206 Identities=11% Similarity=-0.009 Sum_probs=142.4
Q ss_pred eecCCCcccCCCeEEEeeCCCCCeEEEec---CCeEEEEeCCCCcccccccCcc-cceEEEEECCCCcEE-EEecCCCCE
Q psy15995 35 IFATLPRTQRGQPIVLGGDPKGKNFLYTN---GNSVIIRNIENPAISDIYTEHS-CAVNVAKYSPSGFYI-ASGDISGKV 109 (683)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~---~~~i~v~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l-as~~~dg~i 109 (683)
+...+|........-++|+||++++++.. ++.|.+.|+++++.+..+.-.. .....+++. ++.| ++.-.++.+
T Consensus 11 vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v 88 (266)
T 2iwa_A 11 VLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIG 88 (266)
T ss_dssp EEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEE
T ss_pred EEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEE
Confidence 33444444444556788999975555432 4799999999999887754211 122244544 4444 455678899
Q ss_pred EEEeCCCcccccccccc-cCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCC--
Q psy15995 110 RIWDTVNKEHILKNEFH-PIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGG-- 186 (683)
Q Consensus 110 ~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-- 186 (683)
.++|..+.+.+.++... + ....+++||+.|+++..++.|.++|..+.+.+..........
T Consensus 89 ~viD~~t~~v~~~i~~g~~-----------------~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~ 151 (266)
T 2iwa_A 89 FIYDRRTLSNIKNFTHQMK-----------------DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRV 151 (266)
T ss_dssp EEEETTTTEEEEEEECCSS-----------------SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred EEEECCCCcEEEEEECCCC-----------------CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccc
Confidence 99999999888776543 2 124477788888877788999999999987766555443222
Q ss_pred -CeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeecC-------------CcCeEEEEeecCCCeEEEEeeCCC
Q psy15995 187 -PIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ-------------SKPINSCDFKPSRPFRIITGSEDN 252 (683)
Q Consensus 187 -~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~l~~~~~d~ 252 (683)
.+..+.|. ++ .+.+..... ..+.+.+..+++.+..+.-. ....+.++|+|+++.+++++...+
T Consensus 152 ~~~nele~~-dg-~lyvn~~~~-~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~ 228 (266)
T 2iwa_A 152 IRLNELEYI-NG-EVWANIWQT-DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWP 228 (266)
T ss_dssp CCEEEEEEE-TT-EEEEEETTS-SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCS
T ss_pred ccceeEEEE-CC-EEEEecCCC-CeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCC
Confidence 36678888 66 455544332 24788899999988877532 135689999999988888888899
Q ss_pred eEEEEcCCCC
Q psy15995 253 TIAVFEGPPF 262 (683)
Q Consensus 253 ~i~iw~~~~~ 262 (683)
.+.+.++.+.
T Consensus 229 ~v~~i~l~~~ 238 (266)
T 2iwa_A 229 KLFEIKLHLV 238 (266)
T ss_dssp EEEEEEEEEC
T ss_pred eEEEEEEecc
Confidence 9988886554
No 258
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.03 E-value=4.2e-08 Score=87.01 Aligned_cols=199 Identities=11% Similarity=0.037 Sum_probs=138.6
Q ss_pred cEEEEEEeCCCCEEEEEeC--CCcEEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEEEE-cCCeEEEEeCCCCcccCC
Q psy15995 404 PITALALSPDRGTVFTGSH--DGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCG-IDDTIKQVDLSSNAYSGP 480 (683)
Q Consensus 404 ~v~~~~~~~~~~~l~~~~~--dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~ 480 (683)
....+.|+|++..+++.+. ++.|.++|+.+++.......+.......+.+.++.++... .++.+.++|..+.+.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v--- 98 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSN--- 98 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEE---
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcE---
Confidence 3578999998654444443 5799999999999887765433334446777777776665 578999999887532
Q ss_pred ceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCccee
Q psy15995 481 EVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAE 560 (683)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 560 (683)
+..++.. ......+++|++.++++..++.|.++|..+.+......
T Consensus 99 ----------------------------------~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~ 143 (266)
T 2iwa_A 99 ----------------------------------IKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHN 143 (266)
T ss_dssp ----------------------------------EEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred ----------------------------------EEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence 2233322 12334567788888888788999999999988766655
Q ss_pred ecCC----cCeeEEEECCCCCEEEEEeCCCeEEEEECCCCccccccceeee-----------cccEEEEEecCCCCe-EE
Q psy15995 561 LDHL----GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFH-----------SAKVNCVAWSPDSAL-VA 624 (683)
Q Consensus 561 ~~~~----~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~h-----------~~~v~~~~~s~d~~~-l~ 624 (683)
.+.. ..+..+.|. +++..+....++.|.+.|..+++.+......+- ....+.++|+|+++. ++
T Consensus 144 Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfV 222 (266)
T 2iwa_A 144 VKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFV 222 (266)
T ss_dssp CEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEE
T ss_pred ECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEE
Confidence 4421 236678888 776656665788999999999998766654311 135689999999865 55
Q ss_pred EeecCCcEEEEeCCCCc
Q psy15995 625 SGSLDTTIIIWSLASPA 641 (683)
Q Consensus 625 ~~~~d~~v~iw~~~~~~ 641 (683)
++.....+++-++....
T Consensus 223 Tgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 223 TGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EETTCSEEEEEEEEECC
T ss_pred ECCCCCeEEEEEEeccc
Confidence 56567888888876543
No 259
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.98 E-value=8.4e-07 Score=90.19 Aligned_cols=107 Identities=12% Similarity=0.038 Sum_probs=65.7
Q ss_pred CEEEEEcCCCcEEEEeCCCCeeEEeccCCccccC-------eEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEec
Q psy15995 285 SHFASAGFDGKVFLYDGASADLVSELGNPAHKGG-------VYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMG 357 (683)
Q Consensus 285 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-------i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 357 (683)
..+++++.++.|..+|..+|+.+..+........ -..+++ .+..++.++.++.|..+|..+++.+.+....
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 3455555544599999999998877654221110 012222 3567888889999999999999998887654
Q ss_pred Ccc-----eeceEEEEe--cCC-EEEEEec------CCcEEEEecCCCCc
Q psy15995 358 NQV-----EDQQVSCLW--QGD-YLLTVSL------SGFISYLDVNNPST 393 (683)
Q Consensus 358 ~~~-----~~~~~~~~~--~~~-~l~~~~~------~g~i~~~~~~~~~~ 393 (683)
... ....+.... +++ .++++.. ++.+.-+|..++..
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 321 111111111 122 5666553 78899999887554
No 260
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.97 E-value=8.4e-05 Score=79.29 Aligned_cols=565 Identities=11% Similarity=0.040 Sum_probs=296.8
Q ss_pred CCCeEEEeeCCCCCeEEEecCCeEEEEeCCCCcccccc-cCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccc
Q psy15995 44 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIY-TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 122 (683)
Q Consensus 44 ~~~~~~~~~s~~~~~l~~~~~~~i~v~~~~~~~~~~~~-~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~ 122 (683)
.+.+.++.-..+|.+-+.+.+ -+..||-.+-+..... ......|.++....+|. |..|+.+| +..+|..+.+...
T Consensus 21 ~n~V~~I~qD~~G~lWigT~~-GL~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigT~~G-l~~yd~~~~~f~~- 96 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIGSNK-GLFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTY-LYMGTDNG-ILVYNYRADRYEQ- 96 (758)
T ss_dssp CCCEEEEEECTTSCEEEEESS-CEEEECSSCEEECSCTTSTTSSCEEEEEEETTTE-EEEEETTE-EEEEETTTTEECC-
T ss_pred cceEEEEEECCCCCEEEEECC-CccccCCCceEEEEccCCCCCceEEEEEEcCCCc-EEEEeCCC-eEEEeCCCCEEEC-
Confidence 467888888888876655544 4667774332211111 11245689988888774 44555555 8899987764321
Q ss_pred cccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeeccc--cccCCCeeEEEEcCCCCeE
Q psy15995 123 NEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEF--HPIGGPIKDIAWSPDNQRM 200 (683)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l 200 (683)
+... ....|..+.. .+|. |..++.+ -+..+|..+++....... ......|.++...+++...
T Consensus 97 ----~~~~---------~~~~i~~i~~-~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW 160 (758)
T 3ott_A 97 ----PETD---------FPTDVRTMAL-QGDT-LWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIY 160 (758)
T ss_dssp ----CSCC---------CCSCEEEEEE-ETTE-EEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEE
T ss_pred ----cccC---------CCceEEEEEe-cCCc-EEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEE
Confidence 0000 0123555543 3554 3344444 578888876543211010 1113568888888877765
Q ss_pred EEEecCCceEEEEEEccCCCceee-eec----CCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCe
Q psy15995 201 VVVGEGRERFGHVFMSETGTSVGE-ISG----QSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFV 275 (683)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v 275 (683)
+. ...+ +..++..+++.... ... ....|.++...+++.. |..|+. +-+..++..+.+...........|
T Consensus 161 ig-t~~G---l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~-lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i 234 (758)
T 3ott_A 161 VG-TYNG---LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQC-VWIGTE-GYLFQYFPSTGQIKQTEAFHNNSI 234 (758)
T ss_dssp EE-ETTE---EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTE-EEEEEE-EEEEEEETTTTEEEEEEEEEEEEE
T ss_pred EE-eCCC---HhhCccCCCceEEecCCCccccccceeEEEEEECCCCE-EEEEEC-CCCeEEcCCCCeEEeccCCCCCeE
Confidence 54 3321 34455444432111 111 1234788888777653 444554 457888877665433222224468
Q ss_pred EEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCC-----ccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCce
Q psy15995 276 QAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP-----AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSV 350 (683)
Q Consensus 276 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 350 (683)
.++...++|.+.+ |+. +-+.+++..+++........ -....|.++....++. |..|+..| +.++... . .
T Consensus 235 ~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~-~-~ 308 (758)
T 3ott_A 235 KSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYN-S-A 308 (758)
T ss_dssp EEEEECTTCCEEE-EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCC-C--
T ss_pred EEEEEcCCCCEEE-EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccC-C-c
Confidence 8888888887554 444 45888887766543322110 1335688988887776 55566666 5544322 1 1
Q ss_pred eeEEEecC----cceeceEEEEe-cCCEEEEEecCCcEEEEecCCCCc-ceeeee-------eccccEEEEEEeCCCCEE
Q psy15995 351 VSEFIMGN----QVEDQQVSCLW-QGDYLLTVSLSGFISYLDVNNPST-PIRVIK-------GHNKPITALALSPDRGTV 417 (683)
Q Consensus 351 ~~~~~~~~----~~~~~~~~~~~-~~~~l~~~~~~g~i~~~~~~~~~~-~~~~~~-------~~~~~v~~~~~~~~~~~l 417 (683)
...+.... .......++.. ....+.+|+.+| +..++...... ....+. .....|.++.-.++++.-
T Consensus 309 ~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW 387 (758)
T 3ott_A 309 LQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLW 387 (758)
T ss_dssp CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEE
T ss_pred eeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEE
Confidence 12221110 00111222222 234455566544 55665543211 111111 112458888887777655
Q ss_pred EEEeCCCcEEEEcCCCCCcceeccCC-----CCcceeEEEEe-CCeEEEEEcCCeEEEEeCCCCcccC-CceecCCCCce
Q psy15995 418 FTGSHDGFITRWNAKTGENDRVQGAG-----HGNQINGMKAT-GELLYTCGIDDTIKQVDLSSNAYSG-PEVKLGSQPRG 490 (683)
Q Consensus 418 ~~~~~dg~i~~w~~~~~~~~~~~~~~-----~~~~v~~~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~~~ 490 (683)
+ |+ ++-+..+|..+++........ ....|.++..+ ...|..++..+-+..++..+..... ......
T Consensus 388 i-gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~----- 460 (758)
T 3ott_A 388 I-AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAE----- 460 (758)
T ss_dssp E-EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECS-----
T ss_pred E-Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecc-----
Confidence 4 44 456889998876544322111 23457777776 5678888877778888744210000 000000
Q ss_pred eeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCccee--ecCCcCee
Q psy15995 491 LDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAE--LDHLGPVT 568 (683)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~ 568 (683)
..+.... .+ ....+.++...+++.+.+.++..+-+..+|..+++...... ......+.
T Consensus 461 ----------------~~~~~~~---~l-~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~ 520 (758)
T 3ott_A 461 ----------------QNYSVHN---GL-SGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPN 520 (758)
T ss_dssp ----------------EEECGGG---TC-SCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEE
T ss_pred ----------------ccccccc---cc-ccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccc
Confidence 0000000 00 11246778888888877644444558889987765442211 11134678
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCccccccceeeecccEEEEEecCCCCeEEEeecCCcEEEEeCCCCceeeEeec
Q psy15995 569 DCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKN 648 (683)
Q Consensus 569 ~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~~~~~~~~~ 648 (683)
++....+|.+.+.. ..| +..|+..+++.......+.....|.++... +|++ -.++.+| +..++..+.+... ...
T Consensus 521 ~i~~d~~g~lWigt-~~G-l~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~l-Wi~t~~G-l~~~~~~~~~~~~-~~~ 594 (758)
T 3ott_A 521 YLLCDEDGLLWVGF-HGG-VMRINPKDESQQSISFGSFSNNEILSMTCV-KNSI-WVSTTNG-LWIIDRKTMDARQ-QNM 594 (758)
T ss_dssp EEEECTTSCEEEEE-TTE-EEEECC--CCCCBCCCCC---CCEEEEEEE-TTEE-EEEESSC-EEEEETTTCCEEE-C--
T ss_pred eEEECCCCCEEEEe-cCc-eEEEecCCCceEEecccCCCccceEEEEEC-CCCE-EEECCCC-eEEEcCCCceeEE-ecC
Confidence 88888888877654 444 888887766543321111134567888764 5654 4445555 8888887765432 111
Q ss_pred CCCCCCeeEEEEc-cCCeEEEeeCCCcEE
Q psy15995 649 AHPQSQITRLQWL-DNDLLVSVGQDCNTK 676 (683)
Q Consensus 649 ~~~~~~v~~l~~~-~~~~l~s~~~d~~v~ 676 (683)
....+....+. .++.|.-|+.+|-+.
T Consensus 595 --~~~~~~~~~~~~~~G~l~fG~~~Gl~~ 621 (758)
T 3ott_A 595 --TNKRFTSLLFDPKEDCVYLGGADGFGI 621 (758)
T ss_dssp --CCCCCSEEEEETTTTEEEEECBSEEEE
T ss_pred --CCCceeeeEEECCCCcEEEecCCceEE
Confidence 22344455544 466788888888543
No 261
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.95 E-value=2.1e-07 Score=81.24 Aligned_cols=184 Identities=11% Similarity=0.150 Sum_probs=132.2
Q ss_pred ceeeeEeeccceEEEeecCCc--cEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCC
Q psy15995 143 SIRNILVLSIGFYIASGDISG--KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGT 220 (683)
Q Consensus 143 ~i~~~~~s~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~ 220 (683)
....+.|+ ++.+..+.+.+| .|+++|+.+++.+....+. .........+++..|..+.... ..+.+++.++.+
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~---~~~FgeGit~~g~~ly~ltw~~-~~v~v~D~~t~~ 118 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG---KRYFGEGISDWKDKIVGLTWKN-GLGFVWNIRNLR 118 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC---TTCCEEEEEEETTEEEEEESSS-SEEEEEETTTCC
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC---CccceeEEEEeCCEEEEEEeeC-CEEEEEECccCc
Confidence 35778888 677777777765 8999999999987766554 4444544555677887776543 347899999999
Q ss_pred ceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccc-----cCeEEEEECCCCCEEEEEcCCCc
Q psy15995 221 SVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS-----RFVQAVRYSPSGSHFASAGFDGK 295 (683)
Q Consensus 221 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~ 295 (683)
.+.++.-.... ..+++++.. |+.+..++.|.++|..+.+....+.-.. ..++.+.|. +|+..+..-.+..
T Consensus 119 ~~~ti~~~~eG---~glt~dg~~-L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~ 193 (262)
T 3nol_A 119 QVRSFNYDGEG---WGLTHNDQY-LIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNK 193 (262)
T ss_dssp EEEEEECSSCC---CCEEECSSC-EEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEEEECCCCc---eEEecCCCE-EEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCe
Confidence 99888764322 333456664 6666667899999999998887765321 334567776 6766665556889
Q ss_pred EEEEeCCCCeeEEeccCCcc----------ccCeEEEEEccCCCEEEEEEC
Q psy15995 296 VFLYDGASADLVSELGNPAH----------KGGVYAVAWKPDGTQLLTASG 336 (683)
Q Consensus 296 i~iw~~~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~l~~~~~ 336 (683)
|.+.|.++++.+..+...+- ..-...|+|+|+++.|++.+.
T Consensus 194 I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 194 IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 99999999999888765321 235689999999888887775
No 262
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.93 E-value=8.1e-05 Score=76.24 Aligned_cols=462 Identities=11% Similarity=0.038 Sum_probs=248.0
Q ss_pred CCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecC
Q psy15995 161 ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPS 240 (683)
Q Consensus 161 ~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 240 (683)
....|+..++.+........+.. -..+..++|.+++..++.+...... +.....+.......+.........+++.+.
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~-~~~~~~l~~d~~~~~lywtD~~~~~-I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~ 90 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTG-VKEASALDFDVTDNRIYWTDISLKT-ISRAFMNGSALEHVVEFGLDYPEGMAVDWL 90 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCS-CSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEECSSCSCCCEEEEETT
T ss_pred eCCcEEEEECCCCCcceEEEcCC-CCceEEEEEECCCCEEEEEECCCCe-EEEEECCCCCcEEEEeCCCCCcceEEEEeC
Confidence 45678888887654322222222 2467899999998888887765443 344444433333333333356778999987
Q ss_pred CCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcC--CCcEEEEeCCCCeeEEeccCCccccC
Q psy15995 241 RPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGF--DGKVFLYDGASADLVSELGNPAHKGG 318 (683)
Q Consensus 241 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~ 318 (683)
+..+.++-...+.|.+.++............-.....+++.|....|+.... .+.|...++.......... .-..
T Consensus 91 ~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~---~~~~ 167 (628)
T 4a0p_A 91 GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP---NVGR 167 (628)
T ss_dssp TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC---SCSS
T ss_pred CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC---CCCC
Confidence 7765677777889999997654433333334456789999996656665542 5678888876544333332 3456
Q ss_pred eEEEEEccCCCEEEEEEC-CCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEe-cCCcEEEEecCCCCccee
Q psy15995 319 VYAVAWKPDGTQLLTASG-DKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVS-LSGFISYLDVNNPSTPIR 396 (683)
Q Consensus 319 i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~i~~~~~~~~~~~~~ 396 (683)
...++++++++.|+.+.. .+.|...|+..... ..+. ........+++ .++.++... ..+.|...|...+....
T Consensus 168 P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~-~~l~~P~glav--~~~~ly~tD~~~~~I~~~dk~tg~~~~- 242 (628)
T 4a0p_A 168 ANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIA-DDLPHPFGLTQ--YQDYIYWTDWSRRSIERANKTSGQNRT- 242 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE-ECCSCEEEEEE--ETTEEEEEETTTTEEEEEETTTCCSCE-
T ss_pred cceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEee-ccCCCceEEEE--ECCEEEEecCCCCEEEEEECCCCCceE-
Confidence 789999998777776654 56789999875443 2222 22222233333 345555554 46677777754432211
Q ss_pred eeee-----------cc-------------ccEEEEEE----------eC-------CC-------CEEEEEeCCCcEEE
Q psy15995 397 VIKG-----------HN-------------KPITALAL----------SP-------DR-------GTVFTGSHDGFITR 428 (683)
Q Consensus 397 ~~~~-----------~~-------------~~v~~~~~----------~~-------~~-------~~l~~~~~dg~i~~ 428 (683)
.+.. |. +....++. .| |+ .+|+.+ ....|+-
T Consensus 243 ~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s-~~~~i~~ 321 (628)
T 4a0p_A 243 IIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFS-QKSAINR 321 (628)
T ss_dssp EEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEE-ETTEEEE
T ss_pred EEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeee-ccceEEE
Confidence 1100 10 01111111 11 11 122222 1233444
Q ss_pred EcCCCCCc-ceeccCCCCcceeEEEEe--CCeEEEEE-cCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEec
Q psy15995 429 WNAKTGEN-DRVQGAGHGNQINGMKAT--GELLYTCG-IDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVK 504 (683)
Q Consensus 429 w~~~~~~~-~~~~~~~~~~~v~~~~~~--~~~l~~~~-~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (683)
..+..... ...........+.++.++ ++.|+-+. ..+.|+.+++.......
T Consensus 322 i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~------------------------- 376 (628)
T 4a0p_A 322 MVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFT------------------------- 376 (628)
T ss_dssp ECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------------------
T ss_pred EecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceE-------------------------
Confidence 44332211 111111222345566666 34444433 35566666654321100
Q ss_pred eEEEEeCCceeeeecCCCCCcEEEEccCCCEEE-EEcCCCcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEe
Q psy15995 505 QISIVENGAKVSSLPIDYEPSSISLDHEHGLVA-VGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASD 583 (683)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 583 (683)
+.... .........+..+++...++.|. +-...+.|.+.+++.... .............+++.|...+|..+.
T Consensus 377 ---v~~~~--~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~~-~~l~~~~l~~Pr~iavdp~~g~ly~tD 450 (628)
T 4a0p_A 377 ---VVVSS--VPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSV-GVVLKGEQDRPRAVVVNPEKGYMYFTN 450 (628)
T ss_dssp ---EEC----------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCEE-EEEEECTTCCEEEEEEETTTTEEEEEE
T ss_pred ---EEEcc--cccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCCCeE-EEEEeCCCCceeeEEEecCCCeEEEee
Confidence 00000 00000122467899998866554 556678899999875432 222223456789999999544554443
Q ss_pred C-CC--eEEEEECCCCccccccceeeecccEEEEEecCCCCeEEEeec-CCcEEEEeCCCCceeeEeecCCCCCCeeEEE
Q psy15995 584 A-HR--KVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSL-DTTIIIWSLASPAKHIIIKNAHPQSQITRLQ 659 (683)
Q Consensus 584 ~-d~--~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~v~~l~ 659 (683)
. .. .|...++.......... . .-...+.|++.++++.|..+.. .+.|...+++... ...+... ......+|+
T Consensus 451 ~g~~~~~I~r~~~dG~~~~~l~~-~-~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~-r~~~~~~-~~~~P~gla 526 (628)
T 4a0p_A 451 LQERSPKIERAALDGTEREVLFF-S-GLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN-RIVLEDS-NILQPVGLT 526 (628)
T ss_dssp EETTEEEEEEEETTSCSCEEEEC-S-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECS-SCSCEEEEE
T ss_pred cCCCCCeEEEEeCCCCCcEEEEe-c-cCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc-eEEEEcC-CCCCcEEEE
Confidence 2 22 57777776443321111 0 2345789999998776666544 5789999985544 3333211 234567777
Q ss_pred EccCCeEEE
Q psy15995 660 WLDNDLLVS 668 (683)
Q Consensus 660 ~~~~~~l~s 668 (683)
...+.++.+
T Consensus 527 v~~~~ly~t 535 (628)
T 4a0p_A 527 VFENWLYWI 535 (628)
T ss_dssp EETTEEEEE
T ss_pred EECCEEEEE
Confidence 655444444
No 263
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.90 E-value=2.5e-07 Score=97.93 Aligned_cols=246 Identities=7% Similarity=-0.048 Sum_probs=134.0
Q ss_pred CeEEEeeC-CCCCeEEEecC--C----eEEEEeCCCC-ccccc-ccCcccceEEEEECCCCcEEEEecCC-----CCEEE
Q psy15995 46 QPIVLGGD-PKGKNFLYTNG--N----SVIIRNIENP-AISDI-YTEHSCAVNVAKYSPSGFYIASGDIS-----GKVRI 111 (683)
Q Consensus 46 ~~~~~~~s-~~~~~l~~~~~--~----~i~v~~~~~~-~~~~~-~~~h~~~v~~~~~s~d~~~las~~~d-----g~i~i 111 (683)
.....+|| |||++||++.+ | .|+++|++++ +.+.. + ......++|+|||+.|+....+ ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~---~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV---SGTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE---EEECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc---cCceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 34567899 99999999742 2 4999999998 64321 2 1224578999999988876654 25888
Q ss_pred EeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeec---CCccEEEEeccccceee--eccccccCC
Q psy15995 112 WDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGD---ISGKVRIWDTVNKEHIL--KNEFHPIGG 186 (683)
Q Consensus 112 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~d~~i~iwd~~~~~~~~--~~~~~~~~~ 186 (683)
+++.++.....+-.... .......+.++|||++|+... ....|.++|+.++.... ........+
T Consensus 252 ~~lgt~~~~~~lv~~~~-----------~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~ 320 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEH-----------NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG 320 (751)
T ss_dssp EETTSCGGGCEEEEECC-----------CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred EECCCCchhcEEEEecC-----------CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence 88876532111111100 002245678999999888755 34568889998753111 111222234
Q ss_pred CeeEEEEcCCCCeEEEEecCC---ceEEEEEEccCCCceee-eecCCcCeEEEEeecCCCeEEEEeeCCCeEEEE--cC-
Q psy15995 187 PIKDIAWSPDNQRMVVVGEGR---ERFGHVFMSETGTSVGE-ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF--EG- 259 (683)
Q Consensus 187 ~i~~~~~s~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw--~~- 259 (683)
...++.|+. |+.++..+... ...+..++.+++..... +..+...+.--.+.+.+..++++...++..++| ++
T Consensus 321 ~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl~ 399 (751)
T 2xe4_A 321 VRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMAD 399 (751)
T ss_dssp CCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEECC
T ss_pred ceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEecc
Confidence 445555443 66666665442 22334444443223333 444444433334444566667778888865554 54
Q ss_pred ------CCCceeeeccc-cccCeEEEEE----CCCCC-EEEEEcCC---CcEEEEeCCCCee
Q psy15995 260 ------PPFKFKMTKQE-HSRFVQAVRY----SPSGS-HFASAGFD---GKVFLYDGASADL 306 (683)
Q Consensus 260 ------~~~~~~~~~~~-~~~~v~~~~~----~~~~~-~l~~~~~d---g~i~iw~~~~~~~ 306 (683)
..++....+.. ....+..+.+ +++++ ++++.+.. +.+..+|+.+++.
T Consensus 400 ~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 400 SQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred cccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 33331222221 1122333332 34555 44443332 4577778776653
No 264
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.90 E-value=3.3e-07 Score=80.00 Aligned_cols=184 Identities=9% Similarity=0.034 Sum_probs=128.3
Q ss_pred EEEEEEeCCCCEEEEEeCCC--cEEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEEEE-cCCeEEEEeCCCCcccCCc
Q psy15995 405 ITALALSPDRGTVFTGSHDG--FITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCG-IDDTIKQVDLSSNAYSGPE 481 (683)
Q Consensus 405 v~~~~~~~~~~~l~~~~~dg--~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~ 481 (683)
...+.|+ ++.++.+.+.+| .|+.+|+.+++...........--..+...++.|+... .++.+.++|..+.+
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~----- 118 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR----- 118 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCC-----
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCc-----
Confidence 4788898 666666777766 89999999999887775443333345777777777665 48899999988753
Q ss_pred eecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCcceee
Q psy15995 482 VKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL 561 (683)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 561 (683)
.+..++....- ..++++++.|+....++.|.++|..+.+.......
T Consensus 119 --------------------------------~~~ti~~~~eG--~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V 164 (262)
T 3nol_A 119 --------------------------------QVRSFNYDGEG--WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV 164 (262)
T ss_dssp --------------------------------EEEEEECSSCC--CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred --------------------------------EEEEEECCCCc--eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence 23333333322 34446778788777788899999999887766554
Q ss_pred cC-C---cCeeEEEECCCCCEEEEEeCCCeEEEEECCCCccccccceee----------ecccEEEEEecCCCCeEEEee
Q psy15995 562 DH-L---GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGF----------HSAKVNCVAWSPDSALVASGS 627 (683)
Q Consensus 562 ~~-~---~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~----------h~~~v~~~~~s~d~~~l~~~~ 627 (683)
.. . ..++.+.+. +|+..+..-.++.|.+.|..+++........+ .....+.|||+|+++.|.+.+
T Consensus 165 ~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 165 TAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred ccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 31 2 234457776 77766666678899999999998876554321 123568999999988887776
Q ss_pred cC
Q psy15995 628 LD 629 (683)
Q Consensus 628 ~d 629 (683)
..
T Consensus 244 K~ 245 (262)
T 3nol_A 244 KL 245 (262)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 265
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.89 E-value=5.8e-06 Score=78.35 Aligned_cols=246 Identities=7% Similarity=-0.120 Sum_probs=152.7
Q ss_pred CeEEEeeCCCCCeEEEecCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEE-EecCCCCEEEEeCCCcccccccc
Q psy15995 46 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDTVNKEHILKNE 124 (683)
Q Consensus 46 ~~~~~~~s~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~la-s~~~dg~i~iwd~~~~~~~~~~~ 124 (683)
..+|.+..+ ..+|.++..+.|+..++.+......+.+ ...+..++|++.+..|. +-...+.|..+++..........
T Consensus 35 ~~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 35 RRSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp SSCEEESSS-CCEEEEECBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred CCccccccc-CceeEeecccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 445666666 5577777778899999887665444443 34578999997655554 44466789999987653221111
Q ss_pred cccCCCCcccceeeeeecceeeeEeecc-ceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEE
Q psy15995 125 FHPIGGPIKDIGTLLSLTSIRNILVLSI-GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV 203 (683)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 203 (683)
.. ......+++.+. +...++-...+.|.+.++....... ...........+++.|.+..++.+
T Consensus 113 ~~--------------~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~--l~~~~l~~P~~iavdp~~g~ly~t 176 (349)
T 3v64_C 113 TG--------------LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV--LLWQSLEKPRAIALHPMEGTIYWT 176 (349)
T ss_dssp SS--------------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--EECTTCSCEEEEEEETTTTEEEEE
T ss_pred CC--------------CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE--EEeCCCCCcceEEEecCcCeEEEe
Confidence 10 134567888874 4555555667889999987643221 122223567899999988888877
Q ss_pred ecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCC
Q psy15995 204 GEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPS 283 (683)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~ 283 (683)
.......+...+.+...........-...+.++++|++..+.++-...+.|..++.........+.........+++ .+
T Consensus 177 d~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~ 255 (349)
T 3v64_C 177 DWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FE 255 (349)
T ss_dssp ECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ET
T ss_pred ccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-EC
Confidence 66542334444444322222223344567899999987765666667788999997654333333333445667777 34
Q ss_pred CCEEEEEcCCCcEEEEeCCCCeeEEec
Q psy15995 284 GSHFASAGFDGKVFLYDGASADLVSEL 310 (683)
Q Consensus 284 ~~~l~~~~~dg~i~iw~~~~~~~~~~~ 310 (683)
+..+++-...+.|..++..+++....+
T Consensus 256 ~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 256 DSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CEEEEecCCCCeEEEEEccCCCccEEe
Confidence 445555555677888876666555444
No 266
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.88 E-value=4.9e-06 Score=80.14 Aligned_cols=245 Identities=7% Similarity=-0.124 Sum_probs=153.2
Q ss_pred EEEeeCCCCCeEEEecCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEE-EEecCCCCEEEEeCCCcccccccccc
Q psy15995 48 IVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFH 126 (683)
Q Consensus 48 ~~~~~s~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l-as~~~dg~i~iwd~~~~~~~~~~~~~ 126 (683)
.|.+..+ ..+|.++..+.|+..++.+......+.+ ...+..++|++.+..| ++-...+.|..+++........+...
T Consensus 80 ~C~~~~~-~~~l~~~~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 157 (386)
T 3v65_B 80 SCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 157 (386)
T ss_dssp CEEECSS-CCEEEEECBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred eECCccc-cceeEeecCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence 3444555 5577777778899999987765544443 3457899999755555 45456678999998765322111111
Q ss_pred cCCCCcccceeeeeecceeeeEeecc-ceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEec
Q psy15995 127 PIGGPIKDIGTLLSLTSIRNILVLSI-GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGE 205 (683)
Q Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 205 (683)
......+++.+. +...++-...+.|.+.++....... ...........+++.|++..|+.+..
T Consensus 158 --------------~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~--l~~~~l~~P~giavdp~~g~ly~td~ 221 (386)
T 3v65_B 158 --------------LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV--LLWQSLEKPRAIALHPMEGTIYWTDW 221 (386)
T ss_dssp --------------CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE--EECSSCSCEEEEEEETTTTEEEEEEC
T ss_pred --------------CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE--eecCCCCCCcEEEEEcCCCeEEEecc
Confidence 134567888874 4455555667788888887543221 12222356789999998888887765
Q ss_pred CCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCC
Q psy15995 206 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGS 285 (683)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 285 (683)
.....+...+.+...........-...+.++++|++..+.++-...+.|..++.........+.........+++ .++.
T Consensus 222 ~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ 300 (386)
T 3v65_B 222 GNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDS 300 (386)
T ss_dssp SSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTE
T ss_pred CCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCE
Confidence 542334444444332222223344567899999887766667677889999997654433333333445677777 3444
Q ss_pred EEEEEcCCCcEEEEeCCCCeeEEecc
Q psy15995 286 HFASAGFDGKVFLYDGASADLVSELG 311 (683)
Q Consensus 286 ~l~~~~~dg~i~iw~~~~~~~~~~~~ 311 (683)
.+++-...+.|..++..+++....+.
T Consensus 301 ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 301 LYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEeeCCCCeEEEEECCCCcceEEEc
Confidence 55555667788888866666555554
No 267
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.87 E-value=2.2e-06 Score=80.76 Aligned_cols=243 Identities=11% Similarity=0.053 Sum_probs=148.6
Q ss_pred cEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCcceeccCC------------------CCcceeEEEEe--CCeEEEEEc
Q psy15995 404 PITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAG------------------HGNQINGMKAT--GELLYTCGI 463 (683)
Q Consensus 404 ~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~------------------~~~~v~~~~~~--~~~l~~~~~ 463 (683)
...+++++++++.++++..++.|..|+..+++........ .......+.++ +..|+.+..
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 4567889999987888888999999998765443221000 01245677776 467777766
Q ss_pred CCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEcc-CCCEEEEEcC-
Q psy15995 464 DDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDH-EHGLVAVGGA- 541 (683)
Q Consensus 464 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~- 541 (683)
.+.+..++..+........ ...+. ....+..+++.+ +|++.++-..
T Consensus 100 ~~~i~~~d~~~g~~~~~~~--------------------------~~~~~------~~~~p~~i~~d~~~G~l~v~d~~~ 147 (322)
T 2fp8_A 100 YYHLSVVGSEGGHATQLAT--------------------------SVDGV------PFKWLYAVTVDQRTGIVYFTDVST 147 (322)
T ss_dssp TTEEEEECTTCEECEEEES--------------------------EETTE------ECSCEEEEEECTTTCCEEEEESCS
T ss_pred CCCEEEEeCCCCEEEEecc--------------------------cCCCC------cccccceEEEecCCCEEEEECCcc
Confidence 6667777765432100000 00000 012356788999 8877666432
Q ss_pred ----------------CCcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEE-eCCCeEEEEECCCCccccccce
Q psy15995 542 ----------------DSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS-DAHRKVVLYRVPDFELAHNKEW 604 (683)
Q Consensus 542 ----------------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~ 604 (683)
++.|..||..+++.... .........++++|++++|..+ ...+.|.+|++.+...-....+
T Consensus 148 ~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~--~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~ 225 (322)
T 2fp8_A 148 LYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL--LKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVL 225 (322)
T ss_dssp SCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE--EEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEE
T ss_pred cccccccceehcccCCCceEEEEeCCCCEEEEe--ccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceE
Confidence 36788888876654311 1122345679999999977665 4568999999875322111111
Q ss_pred eeecccEEEEEecCCCCeEEEeec----------CCcEEEEeCCCCceeeEeecCC--CCCCeeEEEEccCCeEEEeeCC
Q psy15995 605 GFHSAKVNCVAWSPDSALVASGSL----------DTTIIIWSLASPAKHIIIKNAH--PQSQITRLQWLDNDLLVSVGQD 672 (683)
Q Consensus 605 ~~h~~~v~~~~~s~d~~~l~~~~~----------d~~v~iw~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~l~s~~~d 672 (683)
....+ ...+++.++|++.++... .+.|..++.. ++....+.... ....++.+++.++.++++....
T Consensus 226 ~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~ 303 (322)
T 2fp8_A 226 VKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFH 303 (322)
T ss_dssp EECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSC
T ss_pred EeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEEeCCEEEEeecCC
Confidence 11223 788999999987777654 4668888864 55555553311 1245777877666666676678
Q ss_pred CcEEEEeecc
Q psy15995 673 CNTKIWEIAP 682 (683)
Q Consensus 673 ~~v~vw~~~~ 682 (683)
+.|..++++.
T Consensus 304 ~~i~~~~~~~ 313 (322)
T 2fp8_A 304 GSVGILVYDK 313 (322)
T ss_dssp SEEEEEEC--
T ss_pred CceEEEeccc
Confidence 8899988763
No 268
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.85 E-value=7.4e-07 Score=93.03 Aligned_cols=276 Identities=13% Similarity=0.092 Sum_probs=156.0
Q ss_pred EEEeeCC-CCCeEEEecC------------CeEEEEeCCCCccccc--cc-CcccceEEEEECCCCcEEEEec-CCCCEE
Q psy15995 48 IVLGGDP-KGKNFLYTNG------------NSVIIRNIENPAISDI--YT-EHSCAVNVAKYSPSGFYIASGD-ISGKVR 110 (683)
Q Consensus 48 ~~~~~s~-~~~~l~~~~~------------~~i~v~~~~~~~~~~~--~~-~h~~~v~~~~~s~d~~~las~~-~dg~i~ 110 (683)
...++.| +|++++++.. ..+.+||..+++-... +. .+.....++++..+|+.++.|+ .+..+.
T Consensus 189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 3556677 8998888631 1689999988764322 21 1233334578889999999988 445799
Q ss_pred EEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeec-CC-----ccEEEEeccccceeeeccc--c
Q psy15995 111 IWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGD-IS-----GKVRIWDTVNKEHILKNEF--H 182 (683)
Q Consensus 111 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~d-----~~i~iwd~~~~~~~~~~~~--~ 182 (683)
+||..+.+....-... ....-...++.++|+.++.|+ .+ ..+.+||..+++-...... .
T Consensus 269 ~yd~~t~~W~~~~~~~-------------~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~ 335 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQ-------------VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVN 335 (656)
T ss_dssp EEEGGGTEEEECCCCS-------------SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSG
T ss_pred EecCcCCceeECCCCC-------------ccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccc
Confidence 9998876433211110 002223455667899888888 34 5699999987653221000 0
Q ss_pred ccCCCeeEEEEcCCCCeEEEEecCC-------ceEEEEEEccCCCceeeeecCCc---------CeEEEEeecCCCeEEE
Q psy15995 183 PIGGPIKDIAWSPDNQRMVVVGEGR-------ERFGHVFMSETGTSVGEISGQSK---------PINSCDFKPSRPFRII 246 (683)
Q Consensus 183 ~~~~~i~~~~~s~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~ 246 (683)
+....-....+..++...++++.++ ...+..++.++.........+.. .-.++.|...+..+++
T Consensus 336 p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v 415 (656)
T 1k3i_A 336 PMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILT 415 (656)
T ss_dssp GGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEE
T ss_pred ccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEE
Confidence 0000101122334555445444322 12245566555443322222211 2344455443344577
Q ss_pred EeeCCC-----------eEEEEcCCCCceeeec--ccccc-CeEEEEECCCCCEEEEEcCC-----------CcEEEEeC
Q psy15995 247 TGSEDN-----------TIAVFEGPPFKFKMTK--QEHSR-FVQAVRYSPSGSHFASAGFD-----------GKVFLYDG 301 (683)
Q Consensus 247 ~~~~d~-----------~i~iw~~~~~~~~~~~--~~~~~-~v~~~~~~~~~~~l~~~~~d-----------g~i~iw~~ 301 (683)
.|+.++ .+.+||..+.+..... ..+.. .-.+++..|+++.++.|+.+ ..+.+||.
T Consensus 416 ~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp 495 (656)
T 1k3i_A 416 FGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVP 495 (656)
T ss_dssp ECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEG
T ss_pred EeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcC
Confidence 777532 6788887776654432 22222 23455677899999998854 46899999
Q ss_pred CCCeeEEeccCCccccCeEEEEEccCCCEEEEEEC
Q psy15995 302 ASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASG 336 (683)
Q Consensus 302 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 336 (683)
.+.+....-..+.......+..+.|+++.++.|+.
T Consensus 496 ~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 496 EQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp GGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 88765543222222223334556789999998885
No 269
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.79 E-value=0.00037 Score=74.38 Aligned_cols=520 Identities=11% Similarity=0.071 Sum_probs=274.5
Q ss_pred ccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCcc
Q psy15995 85 SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGK 164 (683)
Q Consensus 85 ~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~ 164 (683)
...|++|.-..+|. |-.|..+| +..+|-.+-+... ... . .....|.++....+|.. -.|+.+|
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~~~---~~~---~-------~~~~~i~~i~~d~~g~l-WigT~~G- 83 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQHF---TYG---E-------NNNTRIYCGVIIDNTYL-YMGTDNG- 83 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEECS---CTT---S-------TTSSCEEEEEEETTTEE-EEEETTE-
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCceEEEE---ccC---C-------CCCceEEEEEEcCCCcE-EEEeCCC-
Confidence 45799999998884 44555666 6677743321111 000 0 01145777777777754 4444455
Q ss_pred EEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeee-----ecCCcCeEEEEeec
Q psy15995 165 VRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEI-----SGQSKPINSCDFKP 239 (683)
Q Consensus 165 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~ 239 (683)
+..||..+.+... ........|.++.. .++ .+.+++.++ +..++.++++.. .+ ......|.++....
T Consensus 84 l~~yd~~~~~f~~--~~~~~~~~i~~i~~-~~g-~lWigt~~G---l~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~ 155 (758)
T 3ott_A 84 ILVYNYRADRYEQ--PETDFPTDVRTMAL-QGD-TLWLGALNG---LYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTK 155 (758)
T ss_dssp EEEEETTTTEECC--CSCCCCSCEEEEEE-ETT-EEEEEETTE---EEEEETTTCCEE-EECHHHHCCSCSCEEEEEECT
T ss_pred eEEEeCCCCEEEC--cccCCCceEEEEEe-cCC-cEEEEcCCc---ceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcC
Confidence 7889987764322 11112235666654 344 455555442 455555544322 22 11234688888887
Q ss_pred CCCeEEEEeeCCCeEEEEcCCCCceeeec-cc----cccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCc
Q psy15995 240 SRPFRIITGSEDNTIAVFEGPPFKFKMTK-QE----HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPA 314 (683)
Q Consensus 240 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 314 (683)
++. +..++.+ -+..++..+.+..... .. ....|.++...+++..|..|+. +-+..++..+++.......
T Consensus 156 ~g~--lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l-- 229 (758)
T 3ott_A 156 DNQ--IYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAF-- 229 (758)
T ss_dssp TCC--EEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEE--
T ss_pred CCC--EEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCC--
Confidence 876 4445554 4777887665543211 11 1234888888877775555664 4588899877654332211
Q ss_pred cccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecC----cc-eeceEEEEec-CCEEEEEecCCcEEEEec
Q psy15995 315 HKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGN----QV-EDQQVSCLWQ-GDYLLTVSLSGFISYLDV 388 (683)
Q Consensus 315 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~-~~~~~~~~~~-~~~l~~~~~~g~i~~~~~ 388 (683)
....|.++...+++.+. .++.+ -+.+++..+++.. .+.... .. .....++..+ ...+-+|+..| +.++..
T Consensus 230 ~~~~i~~i~~d~~g~lW-igT~~-Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~ 305 (758)
T 3ott_A 230 HNNSIKSLALDGNGDLL-AGTDN-GLYVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYG-ISLSRY 305 (758)
T ss_dssp EEEEEEEEEECTTCCEE-EEETT-EEEEECCTTSCCE-EECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSS-EEEECC
T ss_pred CCCeEEEEEEcCCCCEE-EEeCC-ceeEEecCCCcEE-EEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc-cccccc
Confidence 34568888888777654 45554 4788887765432 221111 01 1112233332 33466666666 544433
Q ss_pred CCCCcceeeee-------eccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCc--ceecc------CCCCcceeEEEE
Q psy15995 389 NNPSTPIRVIK-------GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTGEN--DRVQG------AGHGNQINGMKA 453 (683)
Q Consensus 389 ~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~--~~~~~------~~~~~~v~~~~~ 453 (683)
... ...+. .....|.++....+|.+.+. +.+| +..++..++.. ..... .-....|.++..
T Consensus 306 ~~~---~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~ 380 (758)
T 3ott_A 306 NSA---LQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYE 380 (758)
T ss_dssp CC----CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEE
T ss_pred CCc---eeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEE
Confidence 221 11111 11346888888777765554 4554 66676654321 11111 012345777777
Q ss_pred e-CCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccC
Q psy15995 454 T-GELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHE 532 (683)
Q Consensus 454 ~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (683)
+ ...|..|+ ++-+..++..+......... .... ......+.++...++
T Consensus 381 d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~---------------------------~~~~---~~~~~~v~~i~~d~~ 429 (758)
T 3ott_A 381 DKEQQLWIAT-DGSINRYDYATRQFIHYNIV---------------------------DNTG---TYNTNWTYYIFEDTA 429 (758)
T ss_dssp CTTSCEEEEE-TTEEEEEETTTTEEEEEEEE---------------------------CCC-----CBSSSEEEEEECTT
T ss_pred CCCCCEEEEe-CCcHhhcCcCCCcEEEeecC---------------------------CCcC---CCCCceEEEEEEcCC
Confidence 6 55666676 56788888776532110000 0000 001123566666666
Q ss_pred CCEEEEEcCCCcEEEEEcCCC------ccCc--cee--ec-CCcCeeEEEECCCCCEEEEEeCCCeEEEEECCCCccccc
Q psy15995 533 HGLVAVGGADSKVHIYELNNK------SLSP--KAE--LD-HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHN 601 (683)
Q Consensus 533 ~~~l~~~~~dg~i~i~d~~~~------~~~~--~~~--~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~ 601 (683)
+++ -+|+..+-+..+|..+. .... ... .+ ....|.++...++|.+.+.++..+-+..+|..+++....
T Consensus 430 g~l-WigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~ 508 (758)
T 3ott_A 430 GQL-WISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKL 508 (758)
T ss_dssp SEE-EEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEE
T ss_pred CCE-EEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEe
Confidence 654 44665556888886531 1110 000 01 223588999999998877444445588899887765432
Q ss_pred ccee-eecccEEEEEecCCCCeEEEeecCCcEEEEeCCCCceeeEeecCCCCCCeeEEEEccCCeEEEeeCCCcEEEEee
Q psy15995 602 KEWG-FHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWLDNDLLVSVGQDCNTKIWEI 680 (683)
Q Consensus 602 ~~~~-~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~v~vw~~ 680 (683)
.... .....+.++....+|.+.+. +.+| +..++..+..........-....|.++... .+.|..++..| +..++.
T Consensus 509 ~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~lWi~t~~G-l~~~~~ 584 (758)
T 3ott_A 509 FADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQSISFGSFSNNEILSMTCV-KNSIWVSTTNG-LWIIDR 584 (758)
T ss_dssp CTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCCBCCCCC---CCEEEEEEE-TTEEEEEESSC-EEEEET
T ss_pred cCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceEEecccCCCccceEEEEEC-CCCEEEECCCC-eEEEcC
Confidence 1100 01346788888888877654 4444 888887665432211111134567787654 44555555566 444443
No 270
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.79 E-value=1.2e-06 Score=76.45 Aligned_cols=182 Identities=11% Similarity=0.117 Sum_probs=129.3
Q ss_pred eeeeEeeccceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCcee
Q psy15995 144 IRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVG 223 (683)
Q Consensus 144 i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 223 (683)
...+.|+ ++.+..+.+.+|.|+++|+++++.+... +. .........++++.|..+.... ..+.+++.++.+.+.
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~---~~~FgeGit~~g~~Ly~ltw~~-~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL---GNIFAEGLASDGERLYQLTWTE-GLLFTWSGMPPQRER 130 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC---TTCCEEEEEECSSCEEEEESSS-CEEEEEETTTTEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC---CCcceeEEEEeCCEEEEEEccC-CEEEEEECCcCcEEE
Confidence 4677776 4677788888899999999999887666 44 3444433444666777776443 347899999999998
Q ss_pred eeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccc-----cCeEEEEECCCCCEEEEEcCCCcEEE
Q psy15995 224 EISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS-----RFVQAVRYSPSGSHFASAGFDGKVFL 298 (683)
Q Consensus 224 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~i 298 (683)
++...... ..++ ++++. |+.+..++.|.++|..+.+.+..+.-.. ..++.+.|. +|+..+..-.+..|.+
T Consensus 131 ti~~~~eG-wGLt--~Dg~~-L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~v 205 (268)
T 3nok_A 131 TTRYSGEG-WGLC--YWNGK-LVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLE 205 (268)
T ss_dssp EEECSSCC-CCEE--EETTE-EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEE
T ss_pred EEeCCCce-eEEe--cCCCE-EEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEE
Confidence 88754332 3444 55664 5555668999999999998887765322 244667776 7765555556889999
Q ss_pred EeCCCCeeEEeccCCc-----------cccCeEEEEEccCCCEEEEEEC
Q psy15995 299 YDGASADLVSELGNPA-----------HKGGVYAVAWKPDGTQLLTASG 336 (683)
Q Consensus 299 w~~~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~~~~~ 336 (683)
.|.++++.+..+.... ...-...|+++|+++.|++.+.
T Consensus 206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 9999999988876531 1235689999998777766654
No 271
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.77 E-value=4.2e-06 Score=72.44 Aligned_cols=185 Identities=12% Similarity=0.121 Sum_probs=129.8
Q ss_pred cceeeeEeeccceEEEeecCC--ccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCC
Q psy15995 142 TSIRNILVLSIGFYIASGDIS--GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG 219 (683)
Q Consensus 142 ~~i~~~~~s~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~ 219 (683)
.....+.|++ +.+..+.+.+ +.|+.+|+.+++.+....+. .........++++.|..+.... ..+.+++.++.
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~---~~~fgeGi~~~~~~ly~ltw~~-~~v~v~D~~tl 95 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVP---PPYFGAGIVAWRDRLIQLTWRN-HEGFVYDLATL 95 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECC---TTCCEEEEEEETTEEEEEESSS-SEEEEEETTTT
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCC---CCcceeEEEEeCCEEEEEEeeC-CEEEEEECCcC
Confidence 3466788886 6666666665 48999999999987766654 3444444445567777776443 34789999999
Q ss_pred CceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccc-----cCeEEEEECCCCCEEEEEcCCC
Q psy15995 220 TSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS-----RFVQAVRYSPSGSHFASAGFDG 294 (683)
Q Consensus 220 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg 294 (683)
+.+.++...... ..+ .+++.. |+.+..++.|.++|..+.+.+..+.-.. ..++.+.+. +|+..+..-.+.
T Consensus 96 ~~~~ti~~~~~G-wgl--t~dg~~-L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~ 170 (243)
T 3mbr_X 96 TPRARFRYPGEG-WAL--TSDDSH-LYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTS 170 (243)
T ss_dssp EEEEEEECSSCC-CEE--EECSSC-EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTT
T ss_pred cEEEEEeCCCCc-eEE--eeCCCE-EEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCC
Confidence 999888754432 334 356664 5555668999999999998877765422 245566665 666555555678
Q ss_pred cEEEEeCCCCeeEEeccCCc-----------cccCeEEEEEccCCCEEEEEEC
Q psy15995 295 KVFLYDGASADLVSELGNPA-----------HKGGVYAVAWKPDGTQLLTASG 336 (683)
Q Consensus 295 ~i~iw~~~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~~~~~ 336 (683)
.|.+.|.++++.+..+...+ ...-...|+++|+++.|++.+.
T Consensus 171 ~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 171 RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 99999999999988876431 1235689999998887777765
No 272
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.76 E-value=2.4e-06 Score=80.58 Aligned_cols=257 Identities=7% Similarity=-0.041 Sum_probs=144.5
Q ss_pred cceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCC--cc-c---ceeeeeecceeeeEeec-cceEEEe
Q psy15995 86 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGP--IK-D---IGTLLSLTSIRNILVLS-IGFYIAS 158 (683)
Q Consensus 86 ~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~-~---~~~~~~~~~i~~~~~s~-~~~~l~~ 158 (683)
....+++++++|+++.++..++.|..||..+++.. .+........ .. . .........+..+++.+ +++++++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence 34567899999987778888899999998765322 1111000000 00 0 00000113467889997 6765555
Q ss_pred ecCCccEEEEeccccceeeecc-cc-ccCCCeeEEEEcC-CCCeEEEEecC---------------CceEEEEEEccCCC
Q psy15995 159 GDISGKVRIWDTVNKEHILKNE-FH-PIGGPIKDIAWSP-DNQRMVVVGEG---------------RERFGHVFMSETGT 220 (683)
Q Consensus 159 ~~~d~~i~iwd~~~~~~~~~~~-~~-~~~~~i~~~~~s~-~~~~l~~~~~~---------------~~~~~~~~~~~~~~ 220 (683)
... +.|..+|..+++...... .. ........+++.+ +|+..++-... ....+..++.++++
T Consensus 98 d~~-~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 98 DCY-YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp ETT-TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred ECC-CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 343 448888887654211111 11 1113568899999 88655543221 11223444444443
Q ss_pred ceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCc--eeeeccccccCeEEEEECCCCCEEEEEcC------
Q psy15995 221 SVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK--FKMTKQEHSRFVQAVRYSPSGSHFASAGF------ 292 (683)
Q Consensus 221 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------ 292 (683)
.. .+.........++++|+++.++++-..++.|.+|+..... ....+..... ...+++.++|++.++...
T Consensus 177 ~~-~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~ 254 (322)
T 2fp8_A 177 TT-LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNM 254 (322)
T ss_dssp EE-EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSST
T ss_pred EE-EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccc
Confidence 22 2222223456799999998655665677899999876421 1111111223 788999999986665543
Q ss_pred ----CCcEEEEeCCCCeeEEeccCCcc--ccCeEEEEEccCCCEEEEEECCCcEEEEECCCC
Q psy15995 293 ----DGKVFLYDGASADLVSELGNPAH--KGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK 348 (683)
Q Consensus 293 ----dg~i~iw~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 348 (683)
.+.|..+|. .++.+..+..+.. ...+..+++ .+++++++...++.|..+++...
T Consensus 255 ~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 255 HGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp TSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred cCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 467888886 4777666654211 234666666 35555555556778888887643
No 273
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.76 E-value=1.1e-06 Score=76.61 Aligned_cols=182 Identities=10% Similarity=0.029 Sum_probs=126.1
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEEEE-cCCeEEEEeCCCCcccCCcee
Q psy15995 405 ITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCG-IDDTIKQVDLSSNAYSGPEVK 483 (683)
Q Consensus 405 v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~~ 483 (683)
...+.|+. +.+..+.+.+|.|+.+|+.+++..... .....--..+.+.++.|+... .++.+.++|..+.+
T Consensus 57 tqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~------- 127 (268)
T 3nok_A 57 TQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQ------- 127 (268)
T ss_dssp EEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTE-------
T ss_pred cceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCc-------
Confidence 46788874 566778888899999999999988776 333222344677766665554 58899999988753
Q ss_pred cCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCcceeec-
Q psy15995 484 LGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD- 562 (683)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~- 562 (683)
.+..++...... .+.++++.|+.+..++.|.++|..+.+........
T Consensus 128 ------------------------------~~~ti~~~~eGw--GLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~ 175 (268)
T 3nok_A 128 ------------------------------RERTTRYSGEGW--GLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL 175 (268)
T ss_dssp ------------------------------EEEEEECSSCCC--CEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEE
T ss_pred ------------------------------EEEEEeCCCcee--EEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC
Confidence 233333333333 34467888888878899999999998877665543
Q ss_pred CC---cCeeEEEECCCCCEEEEEeCCCeEEEEECCCCccccccceee-----------ecccEEEEEecCCCCeEEEeec
Q psy15995 563 HL---GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGF-----------HSAKVNCVAWSPDSALVASGSL 628 (683)
Q Consensus 563 ~~---~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~-----------h~~~v~~~~~s~d~~~l~~~~~ 628 (683)
.. ..++.+.|. +|+..+..-.++.|.+.|..+++.+....+.+ ...-.+.||++|+++.|.+.+.
T Consensus 176 ~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 176 RGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 22 234667776 77666666578899999999998876555431 1135689999998766666553
No 274
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.75 E-value=7.1e-06 Score=76.50 Aligned_cols=228 Identities=11% Similarity=0.009 Sum_probs=134.5
Q ss_pred cceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCC--c
Q psy15995 86 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDIS--G 163 (683)
Q Consensus 86 ~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--~ 163 (683)
.....++|+++|+++++-..++.|..||.... ....... ...+..+++.++|+++++.... .
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~---------------~~~p~gia~~~dG~l~vad~~~~~~ 95 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV---------------EGKVSGLAFTSNGDLVATGWNADSI 95 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC---------------SSEEEEEEECTTSCEEEEEECTTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC---------------CCCceeEEEcCCCcEEEEeccCCcc
Confidence 45678999999997777767889999997653 2211111 1357788999999866654332 2
Q ss_pred cEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCC-cee---------eeecCCcCeE
Q psy15995 164 KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGT-SVG---------EISGQSKPIN 233 (683)
Q Consensus 164 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~v~ 233 (683)
.|..+|..+++........ .......++..+++ .+++...... .++.++...++ .+. .....-...+
T Consensus 96 ~v~~~d~~~g~~~~~~~~~-~~~~~~g~~~~~~~-~~~v~d~~~g-~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pn 172 (306)
T 2p4o_A 96 PVVSLVKSDGTVETLLTLP-DAIFLNGITPLSDT-QYLTADSYRG-AIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN 172 (306)
T ss_dssp EEEEEECTTSCEEEEEECT-TCSCEEEEEESSSS-EEEEEETTTT-EEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred eEEEEcCCCCeEEEEEeCC-CccccCcccccCCC-cEEEEECCCC-eEEEEeCCCCcEeEEEECCccccccccCCCCcCC
Confidence 4666777776643222221 12233455555544 3444432222 23444443321 111 0001112344
Q ss_pred EEEeecCCCeEEEEeeCCCeEEEEcCCC-Cce--eeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEE--
Q psy15995 234 SCDFKPSRPFRIITGSEDNTIAVFEGPP-FKF--KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVS-- 308 (683)
Q Consensus 234 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-- 308 (683)
.+ +|+++.++++-...+.|..++... ++. ...+. .......+++.++|++.++....+.|.+++.. ++...
T Consensus 173 gi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~ 248 (306)
T 2p4o_A 173 GL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIA 248 (306)
T ss_dssp EE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEE
T ss_pred Cc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEe
Confidence 55 888887677777789999999764 321 11111 11345668999999876666667899999965 65532
Q ss_pred eccCCccccCeEEEEEc---cCCCEEEEEECCC
Q psy15995 309 ELGNPAHKGGVYAVAWK---PDGTQLLTASGDK 338 (683)
Q Consensus 309 ~~~~~~~~~~i~~~~~~---~~~~~l~~~~~dg 338 (683)
.+.. ......+++|. |+++.|++.+..+
T Consensus 249 ~~~~--~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 249 QAEQ--GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CGGG--TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred eccc--ccCCceEEEEecccCCCCEEEEECCCC
Confidence 3332 33568999998 8888887776543
No 275
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.75 E-value=2e-05 Score=73.47 Aligned_cols=231 Identities=13% Similarity=0.123 Sum_probs=126.4
Q ss_pred cCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCC--cEEEEECCCCce
Q psy15995 273 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK--TCKLWDIETKSV 350 (683)
Q Consensus 273 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~ 350 (683)
.....++|+++++.+++-..++.|..||.... ....+. .......+++.++++++++..... .+..++..+++.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~---~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~ 107 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT---VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV 107 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE---CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe---CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence 45778999999997777667899999997653 333333 234688999999999666554332 366677777765
Q ss_pred eeEEEecCcceeceEEEEecCCEEEEEe-cCCcEEEEecCCCCcceeeee---------eccccEEEEEEeCCCCEEEEE
Q psy15995 351 VSEFIMGNQVEDQQVSCLWQGDYLLTVS-LSGFISYLDVNNPSTPIRVIK---------GHNKPITALALSPDRGTVFTG 420 (683)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~i~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~ 420 (683)
................. ..+..+++.. .++.+..+|.......+.... ..-.....+ +|+++.|+.+
T Consensus 108 ~~~~~~~~~~~~~g~~~-~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~ 184 (306)
T 2p4o_A 108 ETLLTLPDAIFLNGITP-LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVS 184 (306)
T ss_dssp EEEEECTTCSCEEEEEE-SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEE
T ss_pred EEEEeCCCccccCcccc-cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEE
Confidence 43322221111112222 2334444444 477777777653211110000 001122333 4555444333
Q ss_pred e-CCCcEEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEE
Q psy15995 421 S-HDGFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLV 499 (683)
Q Consensus 421 ~-~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (683)
. ..+.|..+++... ......
T Consensus 185 d~~~~~I~~~~~~~~----------------------------------------g~~~~~------------------- 205 (306)
T 2p4o_A 185 NTEKMLLLRIPVDST----------------------------------------DKPGEP------------------- 205 (306)
T ss_dssp ETTTTEEEEEEBCTT----------------------------------------SCBCCC-------------------
T ss_pred eCCCCEEEEEEeCCC----------------------------------------CCCCcc-------------------
Confidence 2 3345555554321 000000
Q ss_pred EEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCcceeec-CCcCeeEEEEC---CC
Q psy15995 500 TVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD-HLGPVTDCSFS---PS 575 (683)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~s---~~ 575 (683)
..... ...+..++++++|+++++....+.|.+++.. ++........ .....++++|. ||
T Consensus 206 -------------~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d 268 (306)
T 2p4o_A 206 -------------EIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGD 268 (306)
T ss_dssp -------------EEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTT
T ss_pred -------------EEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCC
Confidence 00000 0235778999999887777778899999976 4332111111 23568999998 88
Q ss_pred CCEEEEEeCCC
Q psy15995 576 NEYLVASDAHR 586 (683)
Q Consensus 576 ~~~l~~~~~d~ 586 (683)
++.|++++..+
T Consensus 269 ~~~LyVt~~~~ 279 (306)
T 2p4o_A 269 CTAIYVVTNGG 279 (306)
T ss_dssp TTEEEEEECTT
T ss_pred CCEEEEECCCC
Confidence 88887766543
No 276
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.73 E-value=4.6e-06 Score=88.28 Aligned_cols=249 Identities=10% Similarity=-0.042 Sum_probs=134.7
Q ss_pred Cccc-ceEEEEEC-CCCcEEEEec-CCC----CEEEEeCCCc-ccccccccccCCCCcccceeeeeecceeeeEeeccce
Q psy15995 83 EHSC-AVNVAKYS-PSGFYIASGD-ISG----KVRIWDTVNK-EHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGF 154 (683)
Q Consensus 83 ~h~~-~v~~~~~s-~d~~~las~~-~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 154 (683)
+|.- .+...+|| |||++||.+. .+| +|+++|+.++ +.+.. ... .....++|+|||+
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~---------------~~~~~~~WspDg~ 233 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVS---------------GTNGEIVWGPDHT 233 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEE---------------EECSCCEECSSTT
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-ccc---------------CceeeEEEecCCC
Confidence 4443 78899999 9999998543 233 4999999988 53211 000 2245789999998
Q ss_pred EEEeecCC-----ccEEEEeccccceeeecccc-ccCCCeeEEEEcCCCCeEEEEecCC-ceEEEEEEccCCC-ce--ee
Q psy15995 155 YIASGDIS-----GKVRIWDTVNKEHILKNEFH-PIGGPIKDIAWSPDNQRMVVVGEGR-ERFGHVFMSETGT-SV--GE 224 (683)
Q Consensus 155 ~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~-~~~~~~~~~~~~~-~~--~~ 224 (683)
.|+....+ ..|.++++.++.......+. ........+.|+|||++|+...... ...+.+++.+++. .. ..
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 313 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEI 313 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEE
Confidence 88876654 36888888775421111111 1223466889999999998877443 3334555555542 12 23
Q ss_pred e-ecCCcCeEEEEeecCCCeEEEEeeCC----CeEEEEcCCCCceeee-cccccc--CeEEEEECCCCCEEEEEcCCCc-
Q psy15995 225 I-SGQSKPINSCDFKPSRPFRIITGSED----NTIAVFEGPPFKFKMT-KQEHSR--FVQAVRYSPSGSHFASAGFDGK- 295 (683)
Q Consensus 225 ~-~~~~~~v~~~~~~~~~~~~l~~~~~d----~~i~iw~~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~l~~~~~dg~- 295 (683)
+ .........+.|+..+. +++....+ ..|..++..+...... +..+.. .+..+.+. .+..+++...++.
T Consensus 314 l~~~~~~~~~s~~~~~g~~-l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~ 391 (751)
T 2xe4_A 314 VRPREKGVRYDVQMHGTSH-LVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLT 391 (751)
T ss_dssp SSCCCTTCCEEEEEETTTE-EEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEE
T ss_pred eecCCCCceEEEeeeeCCE-EEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEE
Confidence 3 33445556666554444 34444443 3566667654221122 222333 34555554 2334556666775
Q ss_pred -EEEEeC-------CCCeeEEeccCCccccCeEEEEE----ccCCCE-EEEEECC---CcEEEEECCCCce
Q psy15995 296 -VFLYDG-------ASADLVSELGNPAHKGGVYAVAW----KPDGTQ-LLTASGD---KTCKLWDIETKSV 350 (683)
Q Consensus 296 -i~iw~~-------~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~-l~~~~~d---g~i~iwd~~~~~~ 350 (683)
|.++++ .+++....+..+ ....+..+.+ +++++. +++.+.. ..+..+|+.+++.
T Consensus 392 ~l~~~dl~~~~~~~~~g~~~~~l~l~-~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 392 RIWTMMADSQDGVFKAGTGLREVVME-EPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp EEEEEECCTTTSCCCTTTCCEECCCC-CSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred EEEEEecccccccccCCccceEECCC-CceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 555564 333313333321 1122334432 345543 3443332 3577777776653
No 277
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.68 E-value=2.9e-05 Score=68.49 Aligned_cols=203 Identities=8% Similarity=0.088 Sum_probs=135.8
Q ss_pred ccCcccceEEEEECCCCcEE-EEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEee
Q psy15995 81 YTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASG 159 (683)
Q Consensus 81 ~~~h~~~v~~~~~s~d~~~l-as~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 159 (683)
+.+-...+..++|+|+++.| ++...++.|...|.. ++.+.++.... ......+++.+++.++++.
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g-------------~~D~EGIa~~~~g~~~vs~ 87 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF-------------VKDLETIEYIGDNQFVISD 87 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS-------------CSSEEEEEECSTTEEEEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC-------------CCChHHeEEeCCCEEEEEE
Confidence 45556689999999976655 556778889999987 76666654432 1456778888999887877
Q ss_pred cCCccEEEEeccccce---eeeccc----cccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEcc---CCCceeeee---
Q psy15995 160 DISGKVRIWDTVNKEH---ILKNEF----HPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE---TGTSVGEIS--- 226 (683)
Q Consensus 160 ~~d~~i~iwd~~~~~~---~~~~~~----~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~--- 226 (683)
-.++.+.++++..... +....+ .........++|+|+++.|.++.+.... .++.++ ....+..+.
T Consensus 88 E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~--~i~~~~g~~~~~~l~i~~~~~ 165 (255)
T 3qqz_A 88 ERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPI--EVYKVNGLLSSNELHISKDKA 165 (255)
T ss_dssp TTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSE--EEEEEESTTCSSCCEEEECHH
T ss_pred CCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCc--eEEEEcccccCCceeeecchh
Confidence 6778899988765432 112211 1223457899999999888888876653 344443 111122111
Q ss_pred ----cCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeecccc---------ccCeEEEEECCCCCEEEEEcCC
Q psy15995 227 ----GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH---------SRFVQAVRYSPSGSHFASAGFD 293 (683)
Q Consensus 227 ----~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~d 293 (683)
.+...+..++++|....+++.......+.++|.. ++.+..+.-. -.....++|.++|+.. ..++-
T Consensus 166 ~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ly-IvsE~ 243 (255)
T 3qqz_A 166 LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIY-IVSEP 243 (255)
T ss_dssp HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEE-EEETT
T ss_pred hccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEE-EEcCC
Confidence 1334678999999988878888889999999965 4444433211 1256889999999844 44666
Q ss_pred CcEEEEeC
Q psy15995 294 GKVFLYDG 301 (683)
Q Consensus 294 g~i~iw~~ 301 (683)
+.++.+..
T Consensus 244 n~~y~f~~ 251 (255)
T 3qqz_A 244 NRFYRFTP 251 (255)
T ss_dssp TEEEEEEC
T ss_pred ceEEEEEe
Confidence 66666653
No 278
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.68 E-value=2.2e-06 Score=89.41 Aligned_cols=276 Identities=13% Similarity=0.059 Sum_probs=148.9
Q ss_pred EEEEcc-CCCEEEEEECCC-----------cEEEEECCCCceeeEEEecCcc--eeceEEEEecCCEEEEEec-CCcEEE
Q psy15995 321 AVAWKP-DGTQLLTASGDK-----------TCKLWDIETKSVVSEFIMGNQV--EDQQVSCLWQGDYLLTVSL-SGFISY 385 (683)
Q Consensus 321 ~~~~~~-~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-~g~i~~ 385 (683)
+.++.+ +++.++.|+.+. .+.+||+.+++........... ......+..++..+++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 888888887543 5889999887754332222222 2223455578888888884 458999
Q ss_pred EecCCCC-cceeeeeeccccEEEEEEeCCCCEEEEEe-CC-----CcEEEEcCCCCCcceecc-----CCCCcceeEEEE
Q psy15995 386 LDVNNPS-TPIRVIKGHNKPITALALSPDRGTVFTGS-HD-----GFITRWNAKTGENDRVQG-----AGHGNQINGMKA 453 (683)
Q Consensus 386 ~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-----g~i~~w~~~~~~~~~~~~-----~~~~~~v~~~~~ 453 (683)
||..... ..+..+.. ...-.+++..++++.++.|+ .+ ..+.+||..+.+...... ............
T Consensus 270 yd~~t~~W~~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEGGGTEEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred ecCcCCceeECCCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 9987532 11111111 11123455667899999988 34 568999998776443310 000000000111
Q ss_pred eCCeEEEEEcCC---------eEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeee----ecC
Q psy15995 454 TGELLYTCGIDD---------TIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSS----LPI 520 (683)
Q Consensus 454 ~~~~l~~~~~d~---------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 520 (683)
.+..++.++.++ .+..||..+....... ..... .+.
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~-------------------------------~~~~~~~~~~~~ 397 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSA-------------------------------GKRQSNRGVAPD 397 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEE-------------------------------EECEETTEECCC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecC-------------------------------CccccccccCCC
Confidence 244445555544 4455665543210000 00000 000
Q ss_pred CCCCcEEEEc-cCCCEEEEEcCCC-----------cEEEEEcCCCccCcce--eecCCcCeeEEEECCCCCEEEEEeCC-
Q psy15995 521 DYEPSSISLD-HEHGLVAVGGADS-----------KVHIYELNNKSLSPKA--ELDHLGPVTDCSFSPSNEYLVASDAH- 585 (683)
Q Consensus 521 ~~~~~~~~~~-~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d- 585 (683)
...-.++.+. .+++++++|+.++ .+.+||..+....... .+.....-.+++..|+++.++.|+.+
T Consensus 398 ~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~ 477 (656)
T 1k3i_A 398 AMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRR 477 (656)
T ss_dssp CBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSB
T ss_pred CCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCccc
Confidence 1112233333 4778888887542 5778887766543222 22222223455677899999998754
Q ss_pred ----------CeEEEEECCCCccccccceeeecccEEEEEecCCCCeEEEeec
Q psy15995 586 ----------RKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSL 628 (683)
Q Consensus 586 ----------~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~ 628 (683)
..+.+||..+.+...............+..+.||+++++.|+.
T Consensus 478 ~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 478 GIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999987665432221101112234456799999999885
No 279
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.67 E-value=4.5e-06 Score=72.26 Aligned_cols=185 Identities=8% Similarity=-0.025 Sum_probs=125.9
Q ss_pred ccEEEEEEeCCCCEEEEEeCC--CcEEEEcCCCCCcceeccCCCCcceeEEEEeCCeEEEEE-cCCeEEEEeCCCCcccC
Q psy15995 403 KPITALALSPDRGTVFTGSHD--GFITRWNAKTGENDRVQGAGHGNQINGMKATGELLYTCG-IDDTIKQVDLSSNAYSG 479 (683)
Q Consensus 403 ~~v~~~~~~~~~~~l~~~~~d--g~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~ 479 (683)
.-...+.|++ +.++.+.+.+ +.|+.+|+.+++...........--..+...++.|+... .++.+.++|..+.+
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~--- 96 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLT--- 96 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTE---
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCc---
Confidence 3466899986 5555666665 489999999999887765443333345666666666554 58899999988753
Q ss_pred CceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCcce
Q psy15995 480 PEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKA 559 (683)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 559 (683)
.+..++....... +.++++.|+++..++.|.++|..+.+.....
T Consensus 97 ----------------------------------~~~ti~~~~~Gwg--lt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I 140 (243)
T 3mbr_X 97 ----------------------------------PRARFRYPGEGWA--LTSDDSHLYMSDGTAVIRKLDPDTLQQVGSI 140 (243)
T ss_dssp ----------------------------------EEEEEECSSCCCE--EEECSSCEEEECSSSEEEEECTTTCCEEEEE
T ss_pred ----------------------------------EEEEEeCCCCceE--EeeCCCEEEEECCCCeEEEEeCCCCeEEEEE
Confidence 3333333333344 4467777777777899999999998877665
Q ss_pred eec-CC---cCeeEEEECCCCCEEEEEeCCCeEEEEECCCCccccccceee-----------ecccEEEEEecCCCCeEE
Q psy15995 560 ELD-HL---GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHNKEWGF-----------HSAKVNCVAWSPDSALVA 624 (683)
Q Consensus 560 ~~~-~~---~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~-----------h~~~v~~~~~s~d~~~l~ 624 (683)
... +. ..++.+.+. +|+..+..-.+..|.+.|..+++.+......+ ...-.+.||++|+++.|.
T Consensus 141 ~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lf 219 (243)
T 3mbr_X 141 KVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLF 219 (243)
T ss_dssp ECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEE
T ss_pred EEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEE
Confidence 543 21 234566665 67666666578899999999998875544321 113568999999887777
Q ss_pred Eeec
Q psy15995 625 SGSL 628 (683)
Q Consensus 625 ~~~~ 628 (683)
+.+.
T Consensus 220 VTGK 223 (243)
T 3mbr_X 220 VTGK 223 (243)
T ss_dssp EEET
T ss_pred EECC
Confidence 6664
No 280
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.67 E-value=3e-05 Score=72.11 Aligned_cols=238 Identities=11% Similarity=-0.055 Sum_probs=145.3
Q ss_pred CeEEEecCCeEEEEeCCCCcc-cccccCcccceEEEEECCCCcEE-EEecCCCCEEEEeCCCcccccccccccCCCCccc
Q psy15995 57 KNFLYTNGNSVIIRNIENPAI-SDIYTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKD 134 (683)
Q Consensus 57 ~~l~~~~~~~i~v~~~~~~~~-~~~~~~h~~~v~~~~~s~d~~~l-as~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 134 (683)
.+|.++....|...++++... ...+......+.+++|.+.+..| .+-...+.|..+++............
T Consensus 5 p~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~-------- 76 (318)
T 3sov_A 5 PLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-------- 76 (318)
T ss_dssp CEEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE--------
T ss_pred cEEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC--------
Confidence 367778888999999987642 11222234467799999854444 55456678999998765321111000
Q ss_pred ceeeeeecceeeeEeec-cceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEE
Q psy15995 135 IGTLLSLTSIRNILVLS-IGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHV 213 (683)
Q Consensus 135 ~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~ 213 (683)
.......+++.+ .+...++-...+.|.+.++....... ...........+++.|.+..++.+.......+..
T Consensus 77 -----~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~--l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r 149 (318)
T 3sov_A 77 -----GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV--LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIER 149 (318)
T ss_dssp -----CCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEE
T ss_pred -----CCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE--EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEE
Confidence 113456788887 45555565667889999987643221 1122335678999999877777776443333444
Q ss_pred EEccCCCceeee-ecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcC
Q psy15995 214 FMSETGTSVGEI-SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGF 292 (683)
Q Consensus 214 ~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 292 (683)
...+ |.....+ ...-...+.+++++++..+.++-+..+.|..++...................+++.. +..+.+-..
T Consensus 150 ~~~d-G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~ 227 (318)
T 3sov_A 150 AGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWS 227 (318)
T ss_dssp EETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETT
T ss_pred EEcC-CCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecC
Confidence 4443 3333332 233456789999997776566667788999999764333322332344566777743 334555556
Q ss_pred CCcEEEEeCCCCeeEEecc
Q psy15995 293 DGKVFLYDGASADLVSELG 311 (683)
Q Consensus 293 dg~i~iw~~~~~~~~~~~~ 311 (683)
.+.|..++..+++....+.
T Consensus 228 ~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 228 THSILACNKYTGEGLREIH 246 (318)
T ss_dssp TTEEEEEETTTCCSCEEEE
T ss_pred CCeEEEEECCCCCceEEEe
Confidence 7788888887776655543
No 281
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.65 E-value=6.8e-05 Score=69.96 Aligned_cols=236 Identities=11% Similarity=-0.012 Sum_probs=144.1
Q ss_pred CeEEEecCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEE-EecCCCCEEEEeCCCc---ccccccccccCCCCc
Q psy15995 57 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDTVNK---EHILKNEFHPIGGPI 132 (683)
Q Consensus 57 ~~l~~~~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~la-s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~ 132 (683)
.+|.++..+.|...|+.+.+....+. ....+..++|++++..|. +-..++.|..+++.+. .....+. .
T Consensus 2 ~~ll~~~~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~-~------ 73 (316)
T 1ijq_A 2 AYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-S------ 73 (316)
T ss_dssp CEEEEECBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-C------
T ss_pred CEEEEECCCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE-e------
Confidence 36778888899999999877655444 345678999998665554 4456678999998762 1111110 0
Q ss_pred ccceeeeeecceeeeEeecc-ceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEE
Q psy15995 133 KDIGTLLSLTSIRNILVLSI-GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFG 211 (683)
Q Consensus 133 ~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 211 (683)
........+++.+. +...++-...+.|.+.++........ ..........+++.|++..++.+..+....+
T Consensus 74 ------~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~--~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I 145 (316)
T 1ijq_A 74 ------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL--FRENGSKPRAIVVDPVHGFMYWTDWGTPAKI 145 (316)
T ss_dssp ------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEE--EECTTCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred ------CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEE--EECCCCCcceEEeCCCCCEEEEEccCCCCeE
Confidence 00134567888864 44555556678899999875432211 1222356789999998888777765432224
Q ss_pred EEEEccCCCceeee-ecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeecc--ccccCeEEEEECCCCCEEE
Q psy15995 212 HVFMSETGTSVGEI-SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ--EHSRFVQAVRYSPSGSHFA 288 (683)
Q Consensus 212 ~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~ 288 (683)
.....+ |.....+ ...-...+.+++++++..+.++-...+.|..+|........... ........+++. .+..++
T Consensus 146 ~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~ 223 (316)
T 1ijq_A 146 KKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFW 223 (316)
T ss_dssp EEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEE
T ss_pred EEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEE
Confidence 444443 3333333 23345678999999887656666677899999976433222221 122345677774 344555
Q ss_pred EEcCCCcEEEEeCCCCeeEEec
Q psy15995 289 SAGFDGKVFLYDGASADLVSEL 310 (683)
Q Consensus 289 ~~~~dg~i~iw~~~~~~~~~~~ 310 (683)
+-...+.|..++..+++....+
T Consensus 224 ~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 224 TDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EETTTTEEEEEETTTCCCCEEE
T ss_pred EECCCCeEEEEeCCCCcceEEE
Confidence 5556778888887666655444
No 282
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.64 E-value=0.00015 Score=68.58 Aligned_cols=245 Identities=8% Similarity=-0.103 Sum_probs=147.0
Q ss_pred eEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccce-EEEeecCCccEE
Q psy15995 88 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGF-YIASGDISGKVR 166 (683)
Q Consensus 88 v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~d~~i~ 166 (683)
.+|.+..+++ +|+.+.. ..|+..++.......... ....+..++|.+.+. ...+-...+.|.
T Consensus 36 ~~C~~~~~~~-~ll~~~~-~~I~~i~~~g~~~~~~~~---------------~~~~~~~l~~d~~~~~ly~~D~~~~~I~ 98 (349)
T 3v64_C 36 RSCKALGPEP-VLLFANR-IDIRQVLPHRSEYTLLLN---------------NLENAIALDFHHRRELVFWSDVTLDRIL 98 (349)
T ss_dssp SCEEESSSCC-EEEEECB-SCEEEECTTSCCEEEEEC---------------SCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred CcccccccCc-eeEeecc-cceEEEeCCCCeeEEeec---------------CCCceEEEEEeccccEEEEEeccCCceE
Confidence 3466666654 4444333 357777776543221111 114467889997544 445555678899
Q ss_pred EEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEE
Q psy15995 167 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRII 246 (683)
Q Consensus 167 iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 246 (683)
.+++........ ..........+++.+.+..|+.+...... +.+.+.+.......+.........+++.|.+..+++
T Consensus 99 r~~~~g~~~~~~--~~~~~~~p~glavd~~~g~ly~~d~~~~~-I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~ 175 (349)
T 3v64_C 99 RANLNGSNVEEV--VSTGLESPGGLAVDWVHDKLYWTDSGTSR-IEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYW 175 (349)
T ss_dssp EEETTSCSCEEE--ECSSCSCCCEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEE
T ss_pred EEecCCCCceEE--EeCCCCCccEEEEecCCCeEEEEcCCCCe-EEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEE
Confidence 999876542211 11122456789999888777777655432 455555533333333344466789999997776566
Q ss_pred EeeCC-CeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEE-cCCCcEEEEeCCCCeeEEeccCCccccCeEEEEE
Q psy15995 247 TGSED-NTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASA-GFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW 324 (683)
Q Consensus 247 ~~~~d-~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~ 324 (683)
+-... +.|..++.............-.....++++|++..|+.+ ...+.|..+++........+.. .......+++
T Consensus 176 td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~--~~~~P~giav 253 (349)
T 3v64_C 176 TDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ--GLPHPFAITV 253 (349)
T ss_dssp EECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--SCSSEEEEEE
T ss_pred eccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeC--CCCCceEEEE
Confidence 65555 788888876543333223334567899999877766655 4467899999765433332322 2345677887
Q ss_pred ccCCCEEEEEECCCcEEEEECCCCceeeEEE
Q psy15995 325 KPDGTQLLTASGDKTCKLWDIETKSVVSEFI 355 (683)
Q Consensus 325 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 355 (683)
. ++..+++-...+.|..++..+++....+.
T Consensus 254 ~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 254 F-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp E-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred E-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 3 45555555567778888876776655554
No 283
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.64 E-value=0.00015 Score=68.04 Aligned_cols=273 Identities=11% Similarity=0.058 Sum_probs=151.4
Q ss_pred CCeEEEeeCCCCCeEEEecCCeEEEEeCCCCcccccc----cCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccc
Q psy15995 45 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIY----TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 120 (683)
Q Consensus 45 ~~~~~~~~s~~~~~l~~~~~~~i~v~~~~~~~~~~~~----~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~ 120 (683)
..+..+.+.+++..++++..+.| +...+.++.-... ......+.+++|++ ++.++. +.++.|.. ....++.-
T Consensus 36 ~~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~-g~~g~i~~-S~DgG~tW 111 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLVGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIV-GEPPIMLH-TTDGGQSW 111 (327)
T ss_dssp SCEEEEEESSSSCEEEEETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEE-EETTEEEE-ESSTTSSC
T ss_pred CcEEEEEECCCCcEEEEcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEE-ECCCeEEE-ECCCCCCc
Confidence 46788889888888888877765 4444444322221 12355789999986 444454 45554433 22333322
Q ss_pred cccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccc-cceeeeccccccCCCeeEEEEcCCCCe
Q psy15995 121 LKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVN-KEHILKNEFHPIGGPIKDIAWSPDNQR 199 (683)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~ 199 (683)
....... .. ...+..+.+.+++..++++. +|.| |...+ ++. ...........+..+++.|++.+
T Consensus 112 ~~~~~~~---~~--------~~~~~~i~~~~~~~~~~~~~-~g~v--~~S~DgG~t-W~~~~~~~~~~~~~~~~~~~~~~ 176 (327)
T 2xbg_A 112 SQIPLDP---KL--------PGSPRLIKALGNGSAEMITN-VGAI--YRTKDSGKN-WQALVQEAIGVMRNLNRSPSGEY 176 (327)
T ss_dssp EECCCCT---TC--------SSCEEEEEEEETTEEEEEET-TCCE--EEESSTTSS-EEEEECSCCCCEEEEEECTTSCE
T ss_pred eECcccc---CC--------CCCeEEEEEECCCCEEEEeC-CccE--EEEcCCCCC-CEEeecCCCcceEEEEEcCCCcE
Confidence 2211110 00 02245567777777777664 4543 22222 221 22222233467899999999887
Q ss_pred EEEEecCCceEEEEEEccC-CCceeee-ecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeecc----cccc
Q psy15995 200 MVVVGEGRERFGHVFMSET-GTSVGEI-SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ----EHSR 273 (683)
Q Consensus 200 l~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~----~~~~ 273 (683)
+++...+. .+...+. +..-..+ ......+..+.+.+++. ++..+.+|.+.+.+...++.-..+. .+..
T Consensus 177 ~~~g~~G~----~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~--~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~ 250 (327)
T 2xbg_A 177 VAVSSRGS----FYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR--LWMIVNGGKIAFSDPDNSENWGELLSPLRRNSV 250 (327)
T ss_dssp EEEETTSS----EEEEECTTCSSCEEEECCSSSCEEEEEECTTSC--EEEEETTTEEEEEETTEEEEECCCBCTTSSCCS
T ss_pred EEEECCCc----EEEEeCCCCCceeECCCCCCCccceeEECCCCC--EEEEeCCceEEEecCCCCCeeEeccCCcccCCc
Confidence 76554331 1222232 3322222 23456788999999886 5556667888776422232222221 1234
Q ss_pred CeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCC-ccccCeEEEEEccCCCEEEEEECCCcEEEEEC
Q psy15995 274 FVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP-AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDI 345 (683)
Q Consensus 274 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 345 (683)
.+.++++.+++..++++. +|.+ .+....++.-..+... .....+.++.|.+++ .+++++.+|.|.-++-
T Consensus 251 ~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 251 GFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp CEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred ceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 588999998887776665 6766 4454555544433311 123567888887554 4667778887766653
No 284
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.64 E-value=0.0001 Score=71.26 Aligned_cols=239 Identities=10% Similarity=-0.058 Sum_probs=147.3
Q ss_pred CCeEEEecCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEe-cCCCCEEEEeCCCccc---ccccccccCCCC
Q psy15995 56 GKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASG-DISGKVRIWDTVNKEH---ILKNEFHPIGGP 131 (683)
Q Consensus 56 ~~~l~~~~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~-~~dg~i~iwd~~~~~~---~~~~~~~~~~~~ 131 (683)
..+|.++..+.|+..+++......... ....+..++|++.+..|..+ ...+.|..+++..... ...+..
T Consensus 83 ~~~ll~~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~------ 155 (400)
T 3p5b_L 83 IAYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS------ 155 (400)
T ss_dssp SCEEEEEETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC------
T ss_pred cceeEEeccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe------
Confidence 347777888899999998776554443 45678899999865555544 4567898898865321 000000
Q ss_pred cccceeeeeecceeeeEeec-cceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceE
Q psy15995 132 IKDIGTLLSLTSIRNILVLS-IGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF 210 (683)
Q Consensus 132 ~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~ 210 (683)
........+++.+ .+...++-...+.|.+.++........ ..........+++.|.+..|+.+..+....
T Consensus 156 -------~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l--~~~~~~~P~~iavdp~~g~ly~td~~~~~~ 226 (400)
T 3p5b_L 156 -------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL--FRENGSKPRAIVVDPVHGFMYWTDWGTPAK 226 (400)
T ss_dssp -------SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEE--EECSSCCEEEEEEETTTTEEEEEECSSSCC
T ss_pred -------CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEE--EeCCCCCcceEEEecccCeEEEEeCCCCCE
Confidence 0114567788887 455555666678899999876542221 222234578999999888887776443333
Q ss_pred EEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccc--cccCeEEEEECCCCCEEE
Q psy15995 211 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE--HSRFVQAVRYSPSGSHFA 288 (683)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~ 288 (683)
+.....+...........-...+.+++++++..+.++-...+.|..+|............ .-.....+++. .+..+.
T Consensus 227 I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lyw 305 (400)
T 3p5b_L 227 IKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFW 305 (400)
T ss_dssp EEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEE
T ss_pred EEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEE
Confidence 455555433322223334467889999998876566666778999999765433332221 22345567763 334555
Q ss_pred EEcCCCcEEEEeCCCCeeEEecc
Q psy15995 289 SAGFDGKVFLYDGASADLVSELG 311 (683)
Q Consensus 289 ~~~~dg~i~iw~~~~~~~~~~~~ 311 (683)
+-...+.|..++..+++.+..+.
T Consensus 306 td~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 306 TDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EESSSCSEEEEESSSCCCCEEEE
T ss_pred ecCCCCeEEEEEcCCCCceEEEe
Confidence 55667788888877776666554
No 285
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.57 E-value=2.2e-05 Score=76.58 Aligned_cols=240 Identities=10% Similarity=0.056 Sum_probs=138.6
Q ss_pred CCeEEEeeCCC--CCeEEEe-cCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCC---CC-EEEEeCCCc
Q psy15995 45 GQPIVLGGDPK--GKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS---GK-VRIWDTVNK 117 (683)
Q Consensus 45 ~~~~~~~~s~~--~~~l~~~-~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d---g~-i~iwd~~~~ 117 (683)
..+..++++|+ +..|.++ ..+.|+.+|.++++..... +.......++++++|+++++.... .. +...+.. +
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~-~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA-S 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG-G
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECC-C
Confidence 45778999995 4455555 3389999999888765543 455668999999999955544321 11 2222211 1
Q ss_pred ccccccccccCCCCcccceeeeeecceeeeEeec-cceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCC
Q psy15995 118 EHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLS-IGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD 196 (683)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~ 196 (683)
.... ............+++.| +|...++-..++.|+.+|..+++.............-..++|+|+
T Consensus 217 ~~~~-------------~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpd 283 (433)
T 4hw6_A 217 GFTE-------------RLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPT 283 (433)
T ss_dssp TTCC-------------EEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTT
T ss_pred Ceec-------------cccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCC
Confidence 1000 00111235567889999 676666666778899999987654111111111223357999999
Q ss_pred CCeEEEEecCCceEEEEEEcc--CCCc--eeeeecC---------------CcCeEEEEe---------ecCCCeEEEEe
Q psy15995 197 NQRMVVVGEGRERFGHVFMSE--TGTS--VGEISGQ---------------SKPINSCDF---------KPSRPFRIITG 248 (683)
Q Consensus 197 ~~~l~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~---------------~~~v~~~~~---------~~~~~~~l~~~ 248 (683)
+++|+++...... +..++.+ ++.. ...+.+. -.....+++ .+++. ++++-
T Consensus 284 G~~LYvad~~~~~-I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD 361 (433)
T 4hw6_A 284 GDWAYIIYNGKHC-IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCD 361 (433)
T ss_dssp SSEEEEEETTTTE-EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEE
T ss_pred CCEEEEEeCCCCE-EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEE
Confidence 9988887765543 4444444 2221 1111111 123567888 55555 36666
Q ss_pred eCCCeEEEEcCCCCceeeeccc-----------------cccCeEEEEEC-CCCCEEEEEcCCCcEEEEeCC
Q psy15995 249 SEDNTIAVFEGPPFKFKMTKQE-----------------HSRFVQAVRYS-PSGSHFASAGFDGKVFLYDGA 302 (683)
Q Consensus 249 ~~d~~i~iw~~~~~~~~~~~~~-----------------~~~~v~~~~~~-~~~~~l~~~~~dg~i~iw~~~ 302 (683)
..++.|+.++. ++........ .-.....++++ +++.++++=..++.|+.++++
T Consensus 362 ~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 362 RDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 66788999984 4543322110 11236778888 556555555556677777653
No 286
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.55 E-value=0.00015 Score=69.76 Aligned_cols=245 Identities=8% Similarity=-0.095 Sum_probs=147.8
Q ss_pred eEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeecc-ceEEEeecCCccEE
Q psy15995 88 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSI-GFYIASGDISGKVR 166 (683)
Q Consensus 88 v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~i~ 166 (683)
-+|.+..+++ +|+.+.. ..|+..++.......... ....+..++|.+. +..+++-...+.|.
T Consensus 79 ~~C~~~~~~~-~l~~~~~-~~I~~i~~~~~~~~~~~~---------------~~~~~~gl~~d~~~~~ly~~D~~~~~I~ 141 (386)
T 3v65_B 79 RSCKALGPEP-VLLFANR-IDIRQVLPHRSEYTLLLN---------------NLENAIALDFHHRRELVFWSDVTLDRIL 141 (386)
T ss_dssp SCEEECSSCC-EEEEECB-SCEEEECTTSCCCEEEEC---------------SCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred CeECCccccc-eeEeecC-ccceeeccCCCcEEEEec---------------CCCccEEEEEecCCCeEEEEeCCCCcEE
Confidence 3455655644 4444433 468888876653221111 1145678899975 44555555678899
Q ss_pred EEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEE
Q psy15995 167 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRII 246 (683)
Q Consensus 167 iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 246 (683)
.+++........ ..........+++.+.+..|+.+...... +.+.+.+.......+.........+++.|.+..+++
T Consensus 142 r~~~~g~~~~~~--~~~~~~~p~glavd~~~g~lY~~d~~~~~-I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~ 218 (386)
T 3v65_B 142 RANLNGSNVEEV--VSTGLESPGGLAVDWVHDKLYWTDSGTSR-IEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYW 218 (386)
T ss_dssp EEETTSCCEEEE--ECSSCSCCCCEEEETTTTEEEEEETTTTE-EEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred EEecCCCCcEEE--EeCCCCCccEEEEEeCCCeEEEEcCCCCe-EEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEE
Confidence 999876542211 11122356789999888888777665432 344444333222233344467889999998776566
Q ss_pred EeeCC-CeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEE-cCCCcEEEEeCCCCeeEEeccCCccccCeEEEEE
Q psy15995 247 TGSED-NTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASA-GFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW 324 (683)
Q Consensus 247 ~~~~d-~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~ 324 (683)
+-... +.|..++.............-.....++++|++..|+.+ ...+.|..+++........+.. .......+++
T Consensus 219 td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~--~~~~P~giav 296 (386)
T 3v65_B 219 TDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ--GLPHPFAITV 296 (386)
T ss_dssp EECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECS--SCSSEEEEEE
T ss_pred eccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEEC--CCCCceEEEE
Confidence 65555 788888876543333333334457899999877766555 4467899999765433333322 2345677888
Q ss_pred ccCCCEEEEEECCCcEEEEECCCCceeeEEE
Q psy15995 325 KPDGTQLLTASGDKTCKLWDIETKSVVSEFI 355 (683)
Q Consensus 325 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 355 (683)
.++..+++-...+.|..++..+++....+.
T Consensus 297 -~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 297 -FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp -ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred -ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 345555555567788888877777666554
No 287
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.54 E-value=3.7e-05 Score=75.08 Aligned_cols=240 Identities=11% Similarity=0.035 Sum_probs=138.3
Q ss_pred CCeEEEeeCC-CCCeEEEec-CCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecC-CCC---EEEEeCCCcc
Q psy15995 45 GQPIVLGGDP-KGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI-SGK---VRIWDTVNKE 118 (683)
Q Consensus 45 ~~~~~~~~s~-~~~~l~~~~-~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~-dg~---i~iwd~~~~~ 118 (683)
..+..++++| ++..|.++. ++.|..+|+++++..... ........++|+++|++|..+.. ++. ..+|-...+.
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~ 215 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG 215 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc
Confidence 4567899998 455555553 489999999887755433 35566889999999996665543 221 2333323332
Q ss_pred cccccccccCCCCcccceeeeeecceeeeEeec-cceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCC
Q psy15995 119 HILKNEFHPIGGPIKDIGTLLSLTSIRNILVLS-IGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDN 197 (683)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 197 (683)
.... ..+........+++.| +|..+++-...+.|..++..++......... .......++|+|++
T Consensus 216 ~~~~-------------~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~-~~~~P~gia~~pdG 281 (430)
T 3tc9_A 216 FKVI-------------TELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ-DSGWEFHIQFHPSG 281 (430)
T ss_dssp SCSE-------------EEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS-SSSCCEEEEECTTS
T ss_pred eeee-------------eeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC-CCCcceeEEEcCCC
Confidence 1100 0111224567889999 6776667667789999999876532222221 12456789999999
Q ss_pred CeEEEEecCCceEEEEEEccC--CCc--eeeeecC---------------CcCeE-EEEee--------cCCCeEEEEee
Q psy15995 198 QRMVVVGEGRERFGHVFMSET--GTS--VGEISGQ---------------SKPIN-SCDFK--------PSRPFRIITGS 249 (683)
Q Consensus 198 ~~l~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~---------------~~~v~-~~~~~--------~~~~~~l~~~~ 249 (683)
++|+++...... +..++.+. +.. ...+.+. -.... .++.. +++. ++++-.
T Consensus 282 ~~lyv~d~~~~~-I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~-lyvaD~ 359 (430)
T 3tc9_A 282 NYAYIVVVNQHY-ILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD-FYFCDR 359 (430)
T ss_dssp SEEEEEETTTTE-EEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEE-EEEEEG
T ss_pred CEEEEEECCCCE-EEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCe-EEEEEC
Confidence 988887765544 34444432 211 1111111 01122 34443 2243 355555
Q ss_pred CCCeEEEEcCCCCceeeeccc-----------------cccCeEEEEECCC-CCEEEEEcCCCcEEEEeCC
Q psy15995 250 EDNTIAVFEGPPFKFKMTKQE-----------------HSRFVQAVRYSPS-GSHFASAGFDGKVFLYDGA 302 (683)
Q Consensus 250 ~d~~i~iw~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~ 302 (683)
..+.|+.++ .+++....... .-.....++++|+ +.++++-..+..|+.++++
T Consensus 360 ~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 360 ENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp GGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 677888888 44543322211 0125788999985 5555555556678777653
No 288
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.52 E-value=0.00063 Score=63.38 Aligned_cols=238 Identities=8% Similarity=-0.118 Sum_probs=139.6
Q ss_pred EEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccc-eEEEeecCCccEEEEecccc---c
Q psy15995 99 YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIG-FYIASGDISGKVRIWDTVNK---E 174 (683)
Q Consensus 99 ~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~iwd~~~~---~ 174 (683)
+|+.+.. ..|+..|+.+.+....+. ....+..++|.+.+ ...++-...+.|..+++... .
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~---------------~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~ 66 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIP---------------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS 66 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC---------------SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------
T ss_pred EEEEECC-CeEEEEECCCcceEehhc---------------CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCc
Confidence 3444433 468888887764322211 11456788999865 45555556788999998761 1
Q ss_pred eeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCC-Ce
Q psy15995 175 HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSED-NT 253 (683)
Q Consensus 175 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~ 253 (683)
... ............+++.+.+..|+.+...... +.+.+.+.......+.........+++.|.+..++++.... +.
T Consensus 67 ~~~-~~~~~~~~~p~glavd~~~~~ly~~d~~~~~-I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~ 144 (316)
T 1ijq_A 67 SYD-TVISRDIQAPDGLAVDWIHSNIYWTDSVLGT-VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK 144 (316)
T ss_dssp -CE-EEECSSCSCCCEEEEETTTTEEEEEETTTTE-EEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCE
T ss_pred ccE-EEEeCCCCCcCEEEEeecCCeEEEEECCCCE-EEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCe
Confidence 111 1111122456889999877777777654433 45556553333223333456788999999777545554433 78
Q ss_pred EEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEc-CCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEE
Q psy15995 254 IAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLL 332 (683)
Q Consensus 254 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 332 (683)
|...+.............-.....+++++++..|+.+. ..+.|..+|.....................+++. ++..++
T Consensus 145 I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~ 223 (316)
T 1ijq_A 145 IKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFW 223 (316)
T ss_dssp EEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEE
T ss_pred EEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEE
Confidence 88887654332222222345678999999877666554 4678999998643322222111122345777775 355555
Q ss_pred EEECCCcEEEEECCCCceeeEEE
Q psy15995 333 TASGDKTCKLWDIETKSVVSEFI 355 (683)
Q Consensus 333 ~~~~dg~i~iwd~~~~~~~~~~~ 355 (683)
+-...+.|..++..+++....+.
T Consensus 224 ~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 224 TDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EETTTTEEEEEETTTCCCCEEEE
T ss_pred EECCCCeEEEEeCCCCcceEEEe
Confidence 55567789999987777665553
No 289
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.47 E-value=0.00058 Score=64.01 Aligned_cols=272 Identities=11% Similarity=0.094 Sum_probs=139.8
Q ss_pred cceeeeEeeccceEEEeecCCccEEEEeccccceeeeccc--cccCCCeeEEEEcCCCCeEEEEecCCceEEEEEE-ccC
Q psy15995 142 TSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEF--HPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFM-SET 218 (683)
Q Consensus 142 ~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~-~~~ 218 (683)
..+.++.+.+++..++++ ..|.| +.....++.-..... ......+.++.|.+ + .+.+++... .++. .+.
T Consensus 36 ~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g----~i~~S~Dg 107 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPP----IMLHTTDG 107 (327)
T ss_dssp SCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETT----EEEEESST
T ss_pred CcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCC----eEEEECCC
Confidence 457778887777777754 45654 333333321111111 11234688999986 3 344444432 3333 333
Q ss_pred CCceeeee---cCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcCCCc
Q psy15995 219 GTSVGEIS---GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGK 295 (683)
Q Consensus 219 ~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 295 (683)
|+.-.... .+...+..+.+.+++. ++.++.++.|..-.-...............+..+++.+++.+++++. +|.
T Consensus 108 G~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~ 184 (327)
T 2xbg_A 108 GQSWSQIPLDPKLPGSPRLIKALGNGS--AEMITNVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGS 184 (327)
T ss_dssp TSSCEECCCCTTCSSCEEEEEEEETTE--EEEEETTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET-TSS
T ss_pred CCCceECccccCCCCCeEEEEEECCCC--EEEEeCCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC-CCc
Confidence 44433322 2345577888877765 33444556553322111122222334556789999999998887765 454
Q ss_pred EEE-EeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEec---CcceeceEEEEecC
Q psy15995 296 VFL-YDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMG---NQVEDQQVSCLWQG 371 (683)
Q Consensus 296 i~i-w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 371 (683)
+.. .|- .++.-..+.. .....+..+.+.++++.+ .++.+|.+.+.+...++....+... .......+.+.+++
T Consensus 185 ~~~S~d~-gG~tW~~~~~-~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~ 261 (327)
T 2xbg_A 185 FYSTWEP-GQTAWEPHNR-TTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPN 261 (327)
T ss_dssp EEEEECT-TCSSCEEEEC-CSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSS
T ss_pred EEEEeCC-CCCceeECCC-CCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCC
Confidence 444 342 1222122211 245678899999988755 5556787777643333332222211 11122334444445
Q ss_pred CEEEEEecCCcEEEEecCCCCcceeeee---eccccEEEEEEeCCCCEEEEEeCCCcEEEEcC
Q psy15995 372 DYLLTVSLSGFISYLDVNNPSTPIRVIK---GHNKPITALALSPDRGTVFTGSHDGFITRWNA 431 (683)
Q Consensus 372 ~~l~~~~~~g~i~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~ 431 (683)
..++ ++.+|.+.. .... ...-..+. .....+.++.+.+++ .++.++.+|.|.-++-
T Consensus 262 ~~~~-~g~~g~i~~-S~Dg-G~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 262 EVWL-AGGAGALLC-SQDG-GQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp CEEE-EESTTCEEE-ESST-TSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred EEEE-EeCCCeEEE-eCCC-CcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 5444 445665532 2222 22222222 123567788887554 4666678898877664
No 290
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.46 E-value=0.00024 Score=62.59 Aligned_cols=204 Identities=10% Similarity=0.065 Sum_probs=131.5
Q ss_pred eeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeecc-ccccCeEEEEECCCCCEEEEEcCCCcEEEEeCC
Q psy15995 224 EISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ-EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGA 302 (683)
Q Consensus 224 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 302 (683)
.+.+-...+..++++|++..++++...++.|...|.. ++....+. .-....-.+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 3455556799999999877656678889999999987 77766653 222457888999988776766667889999876
Q ss_pred CCee---EEeccC----CccccCeEEEEEccCCCEEEEEECCCcEEEEECCC---CceeeEEEe------cCcceeceEE
Q psy15995 303 SADL---VSELGN----PAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET---KSVVSEFIM------GNQVEDQQVS 366 (683)
Q Consensus 303 ~~~~---~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~------~~~~~~~~~~ 366 (683)
.... +..... ...+.....++|+|+++.|+++.+.....+|.+.. ...+..... ........+.
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 5432 222211 12455679999999998888877766666666541 111222211 0122346777
Q ss_pred EEecCC-EEEEEecCCcEEEEecCCCCcceeeeeec---------cccEEEEEEeCCCCEEEEEeCCCcEEEEcC
Q psy15995 367 CLWQGD-YLLTVSLSGFISYLDVNNPSTPIRVIKGH---------NKPITALALSPDRGTVFTGSHDGFITRWNA 431 (683)
Q Consensus 367 ~~~~~~-~l~~~~~~g~i~~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~ 431 (683)
+.|... +++....+..+..+|.... .+..+.-. -..-..+++.++|+..++ ++.+.++.+.-
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~g~--~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLVGE--VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTCC--EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCCCC--EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 777544 5555556677888887643 33332221 125688999999975554 67776766654
No 291
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.44 E-value=0.00025 Score=69.17 Aligned_cols=157 Identities=9% Similarity=0.043 Sum_probs=99.7
Q ss_pred cceeeeEeec-cceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCc--eEEEEEEccC
Q psy15995 142 TSIRNILVLS-IGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE--RFGHVFMSET 218 (683)
Q Consensus 142 ~~i~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~--~~~~~~~~~~ 218 (683)
.....++++| ++..|.+....+.|+.+|+..++..... ........++|++++++|+++..... ....++....
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~---~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~ 213 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY---SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE 213 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE---CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe---cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence 4567889998 4555666555588999999876533222 13356889999999998887765321 1122333333
Q ss_pred CCce--eeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeecc-ccccCeEEEEECCCCCEEE-EEcCCC
Q psy15995 219 GTSV--GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ-EHSRFVQAVRYSPSGSHFA-SAGFDG 294 (683)
Q Consensus 219 ~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-~~~~dg 294 (683)
+... ..+. .......++++|++..++++-..++.|..++...+....... ........++|+|+|++|+ +-...+
T Consensus 214 g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~ 292 (430)
T 3tc9_A 214 SGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQH 292 (430)
T ss_dssp GTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTT
T ss_pred Cceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCC
Confidence 3222 2222 234467888999444446666678899999987665422221 1224578899999999554 445677
Q ss_pred cEEEEeCC
Q psy15995 295 KVFLYDGA 302 (683)
Q Consensus 295 ~i~iw~~~ 302 (683)
.|..++..
T Consensus 293 ~I~~~~~d 300 (430)
T 3tc9_A 293 YILRSDYD 300 (430)
T ss_dssp EEEEEEEE
T ss_pred EEEEEeCC
Confidence 89998754
No 292
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.44 E-value=0.00081 Score=60.11 Aligned_cols=270 Identities=11% Similarity=0.158 Sum_probs=165.1
Q ss_pred CCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCC
Q psy15995 293 DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGD 372 (683)
Q Consensus 293 dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (683)
+.+|.+.|+.++....+... .--+.-.+|..+.++.-. ...+.++|+++++.+..+....+ ..-+-+-..
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi-----~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e~----VvfWkWis~ 117 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPI-----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD----VTFWKWISL 117 (365)
T ss_dssp EEEEEEEETTSTTSCEEEEC-----CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSC----EEEEEECSS
T ss_pred CCEEEEEECCCCCCcccccc-----ccceeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCCc----cEEEEecCC
Confidence 34788889888655433221 122445688888777665 67899999999999988877542 233334344
Q ss_pred EEEEEecCCcEEEEecCCCCcceeeeeecc----ccEEEEEEeCCCCEEEEEeC-------CCcEEEEcCCCCCcceecc
Q psy15995 373 YLLTVSLSGFISYLDVNNPSTPIRVIKGHN----KPITALALSPDRGTVFTGSH-------DGFITRWNAKTGENDRVQG 441 (683)
Q Consensus 373 ~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~-------dg~i~~w~~~~~~~~~~~~ 441 (683)
..+.--.+..++.|++.....|.+.+..|. ..|..-..+++.++++..+- .|.+.+|..+.+.....
T Consensus 118 ~~L~lVT~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~i-- 195 (365)
T 2xzh_A 118 NTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI-- 195 (365)
T ss_dssp SEEEEEESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEE--
T ss_pred CeEEEEcCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccccee--
Confidence 444444567899999988778888877764 46777888999998875432 36788898876544322
Q ss_pred CCCCcceeEEEEeCC----eE-EEEEc---CCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCc
Q psy15995 442 AGHGNQINGMKATGE----LL-YTCGI---DDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGA 513 (683)
Q Consensus 442 ~~~~~~v~~~~~~~~----~l-~~~~~---d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (683)
.+|...-..+...++ .| ..+.. .+++.+.++.......+ ........+.++++
T Consensus 196 eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~--~f~kk~vdi~fppe----------------- 256 (365)
T 2xzh_A 196 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ--PFPKKAVDVFFPPE----------------- 256 (365)
T ss_dssp CCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCC--CCCCEEEEECCCTT-----------------
T ss_pred eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCC--CcccccceeeCCcc-----------------
Confidence 345544444444422 22 22222 26888888854311110 00000000001000
Q ss_pred eeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEeCCCeEEEEEC
Q psy15995 514 KVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 593 (683)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~ 593 (683)
....-+.++.+++....+..-+.-|.+++||++++..+....+.. ..|-..+.+.+..=++.....|.|.--.+
T Consensus 257 -----a~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~-d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v 330 (365)
T 2xzh_A 257 -----AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG-ETIFVTAPHEATAGIIGVNRKGQVLSVCV 330 (365)
T ss_dssp -----CTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCS-SCEEEEEEEGGGTEEEEEETTCEEEEEEE
T ss_pred -----ccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCC-CceEEecccCCCCcEEEEcCCCEEEEEEE
Confidence 012345688899999999999999999999999998876555433 33433344333334445557777777776
Q ss_pred CCCccc
Q psy15995 594 PDFELA 599 (683)
Q Consensus 594 ~~~~~~ 599 (683)
+...++
T Consensus 331 ~~~~iv 336 (365)
T 2xzh_A 331 EEENII 336 (365)
T ss_dssp CTTTHH
T ss_pred CcccEe
Confidence 665554
No 293
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.36 E-value=0.0023 Score=61.78 Aligned_cols=223 Identities=11% Similarity=-0.051 Sum_probs=136.6
Q ss_pred CccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCC----CceeeeecCCcCeEEEEe
Q psy15995 162 SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG----TSVGEISGQSKPINSCDF 237 (683)
Q Consensus 162 d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~ 237 (683)
...|+..++........ ......+..++|.+.+..|+.+...... +..+..+.. .....+.........+++
T Consensus 91 ~~~I~~i~l~~~~~~~~---~~~~~~~~~l~~d~~~~~lywsD~~~~~-I~~~~~~g~~~~~~~~~~~~~~~~~p~glav 166 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSL---IPNLRNVVALDTEVASNRIYWSDLSQRM-ICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 166 (400)
T ss_dssp TTEEEEECTTSCSCEEE---ECSCSCEEEEEEETTTTEEEEEETTTTE-EEEEEC------CCCEEEECSSCSCEEEEEE
T ss_pred cceeEEEccCCcceeEe---ccccCcceEEeeeeccCceEEEecCCCe-EEEEEcccCCCCCcceEEEeCCCCCcccEEE
Confidence 36788888876543222 2234678899999988888887765543 344444431 222333334556789999
Q ss_pred ecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEcC--CCcEEEEeCCCCeeEEeccCCcc
Q psy15995 238 KPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGF--DGKVFLYDGASADLVSELGNPAH 315 (683)
Q Consensus 238 ~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~ 315 (683)
.+.+..+.++-...+.|.+.++........+.........+++.|.+..|+.... .+.|...++........+.. .
T Consensus 167 D~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~--~ 244 (400)
T 3p5b_L 167 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE--N 244 (400)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS--S
T ss_pred EecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC--C
Confidence 9866655677777889999998766544444444456889999997666665542 47899888765443333221 3
Q ss_pred ccCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEE-EEEecCCcEEEEecCCC
Q psy15995 316 KGGVYAVAWKPDGTQLLTAS-GDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYL-LTVSLSGFISYLDVNNP 391 (683)
Q Consensus 316 ~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~g~i~~~~~~~~ 391 (683)
-.....|++++++..|+.+. ..+.|..+|+.... ...+............+...++.+ ++-...+.|..++..++
T Consensus 245 l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 245 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-CEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc-cEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCC
Confidence 35678999999877777765 45679999986543 333332221112222233344444 44445667777775553
No 294
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.36 E-value=0.00068 Score=62.93 Aligned_cols=228 Identities=12% Similarity=0.035 Sum_probs=133.7
Q ss_pred cCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEE-EEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEe--C
Q psy15995 379 LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVF-TGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKAT--G 455 (683)
Q Consensus 379 ~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~--~ 455 (683)
....|+.+++..................+++|++.+..|+ +-...+.|..+++...................++++ +
T Consensus 11 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 11 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp CEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred ccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence 3567888888764322222222334567899998665555 444567899999876643221111122334455555 4
Q ss_pred CeE-EEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCC
Q psy15995 456 ELL-YTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHG 534 (683)
Q Consensus 456 ~~l-~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (683)
+.| ++-...+.|.++++...... .........+..+++.|.+.
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~------------------------------------~l~~~~~~~P~giavdp~~g 134 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRK------------------------------------VLFWQELDQPRAIALDPSSG 134 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCE------------------------------------EEECSSCSSEEEEEEEGGGT
T ss_pred CeEEEEECCCCEEEEEECCCCcEE------------------------------------EEEeCCCCCccEEEEeCCCC
Confidence 444 44455678888887653210 00001223467899998777
Q ss_pred EEEEEc--CCCcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEe-CCCeEEEEECCCCccccccceeeecccE
Q psy15995 535 LVAVGG--ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASD-AHRKVVLYRVPDFELAHNKEWGFHSAKV 611 (683)
Q Consensus 535 ~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~h~~~v 611 (683)
.|+... ..+.|..++++..... ......-.....+++++++..|..++ ..+.|..+++.......... +.....
T Consensus 135 ~ly~td~~~~~~I~r~~~dG~~~~-~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~--~~~~~P 211 (318)
T 3sov_A 135 FMYWTDWGEVPKIERAGMDGSSRF-IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK--GSLPHP 211 (318)
T ss_dssp EEEEEECSSSCEEEEEETTSCSCE-EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SCCSCE
T ss_pred EEEEEecCCCCEEEEEEcCCCCeE-EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec--CCCCCc
Confidence 766665 3578888888754322 11112334568999999777776665 56789999987533221111 123445
Q ss_pred EEEEecCCCCeEEEeecCCcEEEEeCCCCceeeEe
Q psy15995 612 NCVAWSPDSALVASGSLDTTIIIWSLASPAKHIII 646 (683)
Q Consensus 612 ~~~~~s~d~~~l~~~~~d~~v~iw~~~~~~~~~~~ 646 (683)
..+++.. +.++.+-...+.|..++..+++....+
T Consensus 212 ~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 212 FALTLFE-DILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp EEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred eEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEE
Confidence 6777753 345555556778999998777655444
No 295
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.35 E-value=0.00033 Score=68.27 Aligned_cols=250 Identities=11% Similarity=-0.020 Sum_probs=140.2
Q ss_pred CeEEEeeCC-CCCeEEEe--cCCeEEEEeCCCCcccccccC---cccceEEEEE-------CCCCcEEEEecCCC-C---
Q psy15995 46 QPIVLGGDP-KGKNFLYT--NGNSVIIRNIENPAISDIYTE---HSCAVNVAKY-------SPSGFYIASGDISG-K--- 108 (683)
Q Consensus 46 ~~~~~~~s~-~~~~l~~~--~~~~i~v~~~~~~~~~~~~~~---h~~~v~~~~~-------s~d~~~las~~~dg-~--- 108 (683)
.+..|+++| ++..|..+ ..+.|++.|++++.+...+.. .......++| +++|++|..+...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899999 35555544 346899999998877654432 2345899999 99998666655443 2
Q ss_pred ---EEEEeCCC-cccccccccccCCCCcccceeeeeecceeeeEeecc-ceEEEeecCCccEEEEecc-------ccce-
Q psy15995 109 ---VRIWDTVN-KEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSI-GFYIASGDISGKVRIWDTV-------NKEH- 175 (683)
Q Consensus 109 ---i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~i~iwd~~-------~~~~- 175 (683)
|.+.+... +...... ....+........+++.|+ +.++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~----------~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~ 289 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRS----------DIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSW 289 (496)
T ss_dssp EEEEEEEECCTTSCCSTTS----------CEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEecCCCCceeecc----------cceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceee
Confidence 55655333 1111000 0001112245678889995 5555566677889999997 4442
Q ss_pred ----------eeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEcc--CCCc--eeeeecC------C------
Q psy15995 176 ----------ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE--TGTS--VGEISGQ------S------ 229 (683)
Q Consensus 176 ----------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~------~------ 229 (683)
.......+.......++|+|+|++|+++...... ++.++.+ .+.. ...+-+. .
T Consensus 290 tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~-I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~ 368 (496)
T 3kya_A 290 DPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHY-FMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTE 368 (496)
T ss_dssp CCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE-EEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGG
T ss_pred cccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCE-EEEEecCCCcceecccEEecCCCCCCcccCCcccc
Confidence 0011111122456899999999987777665544 3333333 2211 0111111 0
Q ss_pred ---cCeE-EEEee-------cCCCeEEEEeeCCCeEEEEcCCCCceeeecccc------------------------ccC
Q psy15995 230 ---KPIN-SCDFK-------PSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH------------------------SRF 274 (683)
Q Consensus 230 ---~~v~-~~~~~-------~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~------------------------~~~ 274 (683)
.... .+... +++. ++++-..+..|+.++ .++. +.++.+. -..
T Consensus 369 a~f~~P~~gv~vd~~~~~~~~~g~-lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~ 445 (496)
T 3kya_A 369 ARMNNPCQGVFVKNPDYTGEEEYD-FYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRD 445 (496)
T ss_dssp CBCSSEEEEEEEECTTCCSSCCEE-EEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSS
T ss_pred cccCCCeEEEEEccccccccCCCe-EEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCC
Confidence 1233 34443 3444 466666788899998 4553 3333211 123
Q ss_pred eEEEEECCC-CCEEEEEcCCCcEEEEeCCCCeeEEe
Q psy15995 275 VQAVRYSPS-GSHFASAGFDGKVFLYDGASADLVSE 309 (683)
Q Consensus 275 v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~ 309 (683)
...++++++ +.++++=..+..|+.++++.......
T Consensus 446 P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~~ 481 (496)
T 3kya_A 446 VSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAG 481 (496)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECCCC----
T ss_pred CcEEEEECCCCEEEEEeCCCCEEEEEECCCCccccc
Confidence 667888886 65555555567888888766555443
No 296
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.33 E-value=0.00033 Score=68.30 Aligned_cols=202 Identities=12% Similarity=0.085 Sum_probs=116.9
Q ss_pred cceeeeEeecc--ceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCC--ceEEEEEEcc
Q psy15995 142 TSIRNILVLSI--GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR--ERFGHVFMSE 217 (683)
Q Consensus 142 ~~i~~~~~s~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~--~~~~~~~~~~ 217 (683)
.....+++.|+ +..|..+...+.|+.+|..+++..... ........++++++|+ |+++.... .....++...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~---~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT---TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC---CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee---cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEEC
Confidence 45678899984 334444443389999999877643222 1335689999999999 55555421 1112222222
Q ss_pred CCCce-eeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeec-c-ccccCeEEEEECCCCCEEEEE-cCC
Q psy15995 218 TGTSV-GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK-Q-EHSRFVQAVRYSPSGSHFASA-GFD 293 (683)
Q Consensus 218 ~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~l~~~-~~d 293 (683)
.+... ............++++|++..++++-..++.|+.++..++.....+ . +....-..++++|+++.|+.+ ...
T Consensus 215 ~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~ 294 (433)
T 4hw6_A 215 ASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK 294 (433)
T ss_dssp GGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred CCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence 22211 1111123445678899943333556566788999998766652222 1 112234579999999955544 556
Q ss_pred CcEEEEeCC--CCeeE--Eec----cCCc---------cccCeEEEEE---------ccCCCEEEEEECCCcEEEEECCC
Q psy15995 294 GKVFLYDGA--SADLV--SEL----GNPA---------HKGGVYAVAW---------KPDGTQLLTASGDKTCKLWDIET 347 (683)
Q Consensus 294 g~i~iw~~~--~~~~~--~~~----~~~~---------~~~~i~~~~~---------~~~~~~l~~~~~dg~i~iwd~~~ 347 (683)
+.|+.++.. ++... ..+ ...+ .-.....+++ .+++.++++-...+.|+.++. +
T Consensus 295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~ 373 (433)
T 4hw6_A 295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-E 373 (433)
T ss_dssp TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-T
T ss_pred CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-C
Confidence 789998765 23211 111 0000 1234677899 667766666666778999885 4
Q ss_pred C
Q psy15995 348 K 348 (683)
Q Consensus 348 ~ 348 (683)
+
T Consensus 374 G 374 (433)
T 4hw6_A 374 G 374 (433)
T ss_dssp S
T ss_pred C
Confidence 4
No 297
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.29 E-value=8.8e-06 Score=84.76 Aligned_cols=238 Identities=11% Similarity=-0.008 Sum_probs=138.8
Q ss_pred CeEEEecCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEec-CCCCEEEEeCCCc---ccccccccccCCCCc
Q psy15995 57 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD-ISGKVRIWDTVNK---EHILKNEFHPIGGPI 132 (683)
Q Consensus 57 ~~l~~~~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~-~dg~i~iwd~~~~---~~~~~~~~~~~~~~~ 132 (683)
.+|+++..+.|++.++.+.+....+.. ...+..++|++.+..|..+. ..+.|..+++.+. .....+..
T Consensus 378 ~~ll~~~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~------- 449 (699)
T 1n7d_A 378 AYLFFTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS------- 449 (699)
T ss_dssp CCBCCCCTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC-------
T ss_pred eeEEecCccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe-------
Confidence 345556667888999888766554443 34567899998766666554 5578999998752 11100000
Q ss_pred ccceeeeeecceeeeEeecc-ceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEE
Q psy15995 133 KDIGTLLSLTSIRNILVLSI-GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFG 211 (683)
Q Consensus 133 ~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 211 (683)
........+++.+. +.+.++-...+.|.+.++........ ..........+++.|++.+|+.+.......+
T Consensus 450 ------~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l--~~~~~~~P~giavDp~~g~ly~td~~~~~~I 521 (699)
T 1n7d_A 450 ------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL--FREQGSKPRAIVVDPVHGFMYWTDWGTPAKI 521 (699)
T ss_dssp ------SCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEE--CCCSSCCCCCEECCSSSSCCEECCCSSSCCE
T ss_pred ------CCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEE--EeCCCCCcceEEEccCCCcEEEcccCCCCeE
Confidence 00133556788754 44455555678899999876542221 1112245678999998777776654322223
Q ss_pred EEEEccCCCceeee-ecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeecc--ccccCeEEEEECCCCCEEE
Q psy15995 212 HVFMSETGTSVGEI-SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ--EHSRFVQAVRYSPSGSHFA 288 (683)
Q Consensus 212 ~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~ 288 (683)
.....+ +.....+ ...-...+.|+++|++..++++-...+.|..++.........+. ........+++..+ .+++
T Consensus 522 ~~~~~d-G~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lyw 599 (699)
T 1n7d_A 522 KKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFW 599 (699)
T ss_dssp EBCCSS-SCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEE
T ss_pred EEEeCC-CCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEE
Confidence 333332 2222222 22334567899999877666776778899999986543332222 11122344555443 3444
Q ss_pred EEcCCCcEEEEeCCCCeeEEeccC
Q psy15995 289 SAGFDGKVFLYDGASADLVSELGN 312 (683)
Q Consensus 289 ~~~~dg~i~iw~~~~~~~~~~~~~ 312 (683)
+....+.|..++..+++.+..+..
T Consensus 600 td~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 600 TDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp ECSTTTCEEEEETTTEEEEECCCT
T ss_pred EeCCCCeEEEEEccCCCceEEeec
Confidence 555567899999888888777653
No 298
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.26 E-value=0.0011 Score=69.48 Aligned_cols=240 Identities=11% Similarity=-0.025 Sum_probs=139.9
Q ss_pred CeEEEecCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEE-EEecCCCCEEEEeCCCcccccccccccCCCCcccc
Q psy15995 57 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDI 135 (683)
Q Consensus 57 ~~l~~~~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l-as~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 135 (683)
.+|.++....|+..++.......... ....+..|+|.+....| ++-...+.|+.+++............ +
T Consensus 396 p~Ll~an~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~v--------i 466 (791)
T 3m0c_C 396 AYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV--------I 466 (791)
T ss_dssp CEEEEECBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE--------E
T ss_pred cccccccccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEE--------E
Confidence 36777777888888888766544443 45567899999855444 45556678988888753110000000 0
Q ss_pred eeeeeecceeeeEeeccc-eEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEE
Q psy15995 136 GTLLSLTSIRNILVLSIG-FYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVF 214 (683)
Q Consensus 136 ~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~ 214 (683)
.........|++.+.+ ++.++-...+.|.+.++........ ..........|++.|.+.+|+.+..+....+...
T Consensus 467 --~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l--~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~ 542 (791)
T 3m0c_C 467 --SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL--FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 542 (791)
T ss_dssp --CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEE--EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred --ecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEE--EeCCCCCcceEEEecCCCCEEEecCCCCCeEEEE
Confidence 0011456678888766 4455556678899999876542221 2222356789999999888888765543335555
Q ss_pred EccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccc--cccCeEEEEECCCCCEEEEEcC
Q psy15995 215 MSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE--HSRFVQAVRYSPSGSHFASAGF 292 (683)
Q Consensus 215 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~ 292 (683)
.++.......+...-...+.|++.+.+..++++-...+.|...++........... .-.....|++.. +.++++-..
T Consensus 543 ~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~ 621 (791)
T 3m0c_C 543 GLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDII 621 (791)
T ss_dssp ETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETT
T ss_pred ecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECC
Confidence 55433333333334467899999988776556656677899998765443333322 122344555532 223333344
Q ss_pred CCcEEEEeCCCCeeEEec
Q psy15995 293 DGKVFLYDGASADLVSEL 310 (683)
Q Consensus 293 dg~i~iw~~~~~~~~~~~ 310 (683)
.+.|...+..+++.+..+
T Consensus 622 ~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 622 NEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TTEEEEEETTTCCCCEEE
T ss_pred CCEEEEEeCCCCcceEEe
Confidence 566777776666544444
No 299
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.25 E-value=0.0033 Score=58.79 Aligned_cols=270 Identities=11% Similarity=0.155 Sum_probs=168.1
Q ss_pred CCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCC
Q psy15995 293 DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGD 372 (683)
Q Consensus 293 dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (683)
+..|.+.|+.++..+..... .--+.-.+|..+.++.-. ...+.++|+++.+.+..+....+.. -+.+. +.+
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi-----~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~Vv--fWkWi-s~~ 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI-----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVT--FWKWI-SLN 117 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC-----CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCC--EEEEE-ETT
T ss_pred CCeEEEEECCCCCcceeccc-----ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCce--EEEec-CCC
Confidence 34788888887655433221 123455788887777665 6789999999999998887765432 22222 333
Q ss_pred EEEEEecCCcEEEEecCCCCcceeeeeecc----ccEEEEEEeCCCCEEEEEeC-------CCcEEEEcCCCCCcceecc
Q psy15995 373 YLLTVSLSGFISYLDVNNPSTPIRVIKGHN----KPITALALSPDRGTVFTGSH-------DGFITRWNAKTGENDRVQG 441 (683)
Q Consensus 373 ~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~-------dg~i~~w~~~~~~~~~~~~ 441 (683)
.+ .--.+..|+.|++.....|.+.+..|. ..|..-..+++.++++..+- .|.+.+|..+.+.....
T Consensus 118 ~l-~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~i-- 194 (494)
T 1bpo_A 118 TV-ALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI-- 194 (494)
T ss_dssp EE-EEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEE--
T ss_pred eE-EEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchh--
Confidence 33 334567899999987778888877764 46778888999999884432 36788998876654333
Q ss_pred CCCCcceeEEEEeCC-----eEEEEEc---CCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCc
Q psy15995 442 AGHGNQINGMKATGE-----LLYTCGI---DDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGA 513 (683)
Q Consensus 442 ~~~~~~v~~~~~~~~-----~l~~~~~---d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (683)
.+|...-..+...++ .+..+.. .+++.+.++.......+ ........+.++++
T Consensus 195 eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~--~f~kk~vdv~fppe----------------- 255 (494)
T 1bpo_A 195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ--PFPKKAVDVFFPPE----------------- 255 (494)
T ss_dssp CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCC--CCCCEEEECCCCTT-----------------
T ss_pred eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCC--CccceeeeeeCCcc-----------------
Confidence 456655555555532 2333333 27888988865411110 00000000000000
Q ss_pred eeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEeCCCeEEEEEC
Q psy15995 514 KVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 593 (683)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~ 593 (683)
....-+.++.+++....+..-+.-|.+++||++++..+....+. ...|-..+...+..=++.....|.|.--.+
T Consensus 256 -----~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs-~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v 329 (494)
T 1bpo_A 256 -----AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS-GETIFVTAPHEATAGIIGVNRKGQVLSVCV 329 (494)
T ss_dssp -----STTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEEETTTTEEEEEETTCEEEEEEE
T ss_pred -----cccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeeccc-CCceEEecccCCCCcEEEEccCceEEEEEE
Confidence 01234578899999999999999999999999999887655543 334444444444444555567787777777
Q ss_pred CCCccc
Q psy15995 594 PDFELA 599 (683)
Q Consensus 594 ~~~~~~ 599 (683)
+...++
T Consensus 330 ~e~~iv 335 (494)
T 1bpo_A 330 EEENII 335 (494)
T ss_dssp CTTTHH
T ss_pred ccccch
Confidence 665554
No 300
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.18 E-value=0.00081 Score=63.56 Aligned_cols=237 Identities=11% Similarity=0.022 Sum_probs=125.2
Q ss_pred CCeEEEeeCCCCCeEEEecCCeEEEEeCCCCc-ccccc---cCcccceEEEEECCC---CcEEEEecC----C----CCE
Q psy15995 45 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPA-ISDIY---TEHSCAVNVAKYSPS---GFYIASGDI----S----GKV 109 (683)
Q Consensus 45 ~~~~~~~~s~~~~~l~~~~~~~i~v~~~~~~~-~~~~~---~~h~~~v~~~~~s~d---~~~las~~~----d----g~i 109 (683)
..+..+++.|||+++++...+.|.+++. +++ .+..+ .........|+++|+ +.+|..+.. + ..|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 4678899999999888888899999974 443 22111 122356889999997 444443332 3 467
Q ss_pred EEEeCCCcc-cccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecC-------------CccEEEEeccccce
Q psy15995 110 RIWDTVNKE-HILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDI-------------SGKVRIWDTVNKEH 175 (683)
Q Consensus 110 ~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-------------d~~i~iwd~~~~~~ 175 (683)
..|+..... .+...+.- +..+. .........++|.|||.+.++.+. .|.|.-++.... .
T Consensus 108 ~r~~~~~~~~~~~~~~~l-----~~~~~-~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~ 180 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTL-----IDGIP-GAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-P 180 (354)
T ss_dssp EEEEECSSSCCEEEEEEE-----EEEEE-CCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-C
T ss_pred EEEEECCCCcCcCccEEE-----EEcCC-CCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-C
Confidence 777765441 00000000 00000 000123467999999986665432 244555554321 0
Q ss_pred e-------eeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCC------------------ceeeeecCCc
Q psy15995 176 I-------LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGT------------------SVGEISGQSK 230 (683)
Q Consensus 176 ~-------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~ 230 (683)
. ......++ .....++|+|+...|.++.......-.+.....+. ++..+.....
T Consensus 181 p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ 259 (354)
T 3a9g_A 181 PADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETW 259 (354)
T ss_dssp CTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCC
T ss_pred CCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCc
Confidence 0 00000111 34568999995445555554443222233333322 1111211233
Q ss_pred CeEEEEee-------cCCCeEEEEeeCCCeEEEEcCCCC-cee--ee-ccccccCeEEEEECCCCCEEEEEc
Q psy15995 231 PINSCDFK-------PSRPFRIITGSEDNTIAVFEGPPF-KFK--MT-KQEHSRFVQAVRYSPSGSHFASAG 291 (683)
Q Consensus 231 ~v~~~~~~-------~~~~~~l~~~~~d~~i~iw~~~~~-~~~--~~-~~~~~~~v~~~~~~~~~~~l~~~~ 291 (683)
....+.|. .++. ++++....+.|...++... +.. .. +......+..+++.|||.+.++..
T Consensus 260 ap~G~~~y~g~~fp~~~G~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 260 APSGASFVHGDMFPGLRGW-LLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CEEEEEECCSSSCGGGTTE-EEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CCcceEEECCCCCcccCCc-EEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 56777774 4554 3566566678888887643 221 12 222245788999999997665553
No 301
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.18 E-value=0.0038 Score=65.55 Aligned_cols=212 Identities=7% Similarity=-0.141 Sum_probs=128.1
Q ss_pred cceeeeEeecc-ceEEEeecCCccEEEEeccccce--eeeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccC
Q psy15995 142 TSIRNILVLSI-GFYIASGDISGKVRIWDTVNKEH--ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSET 218 (683)
Q Consensus 142 ~~i~~~~~s~~-~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~ 218 (683)
..+..+++.+. +...++-...+.|+.+++..... .....+.........|++.+.+..|+.+...... +.+.+.+.
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~-I~v~~ldG 502 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT-VSVADTKG 502 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTE-EEEEETTS
T ss_pred CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCe-EEEEeCCC
Confidence 45678888884 44555555667888888875311 1111122223567789999999888887765543 55666654
Q ss_pred CCceeeeecCCcCeEEEEeecCCCeEEEEeeC-CCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEc-CCCcE
Q psy15995 219 GTSVGEISGQSKPINSCDFKPSRPFRIITGSE-DNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG-FDGKV 296 (683)
Q Consensus 219 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i 296 (683)
......+.........|++.|.+.+++++-.. .+.|.+.++............-.....|++.+.+..|+.+. ..+.|
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I 582 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 582 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcE
Confidence 33333334455668999999987654555433 37888888765544444444446788999998777666664 45689
Q ss_pred EEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEE
Q psy15995 297 FLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFI 355 (683)
Q Consensus 297 ~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 355 (683)
...++........+.....-....+|++.. +.++++-...+.|...|..+++.+..+.
T Consensus 583 ~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 583 SSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp EEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 999986544433332211223455676643 3334444456778888877776665553
No 302
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.15 E-value=0.0036 Score=61.06 Aligned_cols=211 Identities=10% Similarity=-0.022 Sum_probs=121.9
Q ss_pred cceeeeEeec-cce-EEEeecCCccEEEEeccccceeeeccccc-cCCCeeEEEE-------cCCCCeEEEEecCC----
Q psy15995 142 TSIRNILVLS-IGF-YIASGDISGKVRIWDTVNKEHILKNEFHP-IGGPIKDIAW-------SPDNQRMVVVGEGR---- 207 (683)
Q Consensus 142 ~~i~~~~~s~-~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~i~~~~~-------s~~~~~l~~~~~~~---- 207 (683)
.....|+|.| +.. ++++-...+.|++.|++++.......... .......++| ++++++|+++....
T Consensus 139 ~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 139 SDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp CSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 3467889998 344 44444445779999998876443222211 1235899999 99999888877654
Q ss_pred -ceEEEEEEccC-CCce-----eeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCC-------CCce---------
Q psy15995 208 -ERFGHVFMSET-GTSV-----GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP-------PFKF--------- 264 (683)
Q Consensus 208 -~~~~~~~~~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~-------~~~~--------- 264 (683)
...+.+...+. +... ..+.. ......++++|++..++++-..++.|..+|.. ++..
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 12233333233 2221 12222 23456788999766667777788899999987 4443
Q ss_pred --eee-c-cccccCeEEEEECCCCCEEEEE-cCCCcEEEEeC--CCCee-----EEec-cCCc---------cccCeE-E
Q psy15995 265 --KMT-K-QEHSRFVQAVRYSPSGSHFASA-GFDGKVFLYDG--ASADL-----VSEL-GNPA---------HKGGVY-A 321 (683)
Q Consensus 265 --~~~-~-~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~--~~~~~-----~~~~-~~~~---------~~~~i~-~ 321 (683)
... + .+.......++|+|+|+.|+.+ +....|+.++. ..+.. +.-. ...+ .-.... .
T Consensus 298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g 377 (496)
T 3kya_A 298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG 377 (496)
T ss_dssp TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence 111 1 1223456899999999955444 55678888654 33322 1111 1000 111234 4
Q ss_pred EEEc-------cCCCEEEEEECCCcEEEEECCCCceeeEEE
Q psy15995 322 VAWK-------PDGTQLLTASGDKTCKLWDIETKSVVSEFI 355 (683)
Q Consensus 322 ~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 355 (683)
++.. +++.++++-..++.|+.++. ++ .+.++.
T Consensus 378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G-~v~Tia 416 (496)
T 3kya_A 378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG-IVSTYA 416 (496)
T ss_dssp EEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC-BEEEEE
T ss_pred EEEccccccccCCCeEEEEECCCCEEEEEeC-CC-CEEEEe
Confidence 4554 45666666666788999984 45 344443
No 303
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.14 E-value=0.0015 Score=59.94 Aligned_cols=199 Identities=8% Similarity=0.180 Sum_probs=129.0
Q ss_pred cceEEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCC----CCe--EEEEecCC--ceEEEEEEcc--CCCc
Q psy15995 152 IGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD----NQR--MVVVGEGR--ERFGHVFMSE--TGTS 221 (683)
Q Consensus 152 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~----~~~--l~~~~~~~--~~~~~~~~~~--~~~~ 221 (683)
...+++.....+-+.+||+ +|+.+.... .+.++.+..-|+ |+. +++++... ...+.++..+ ++ .
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~----~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYN----TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-T 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEEC----CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-C
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEcc----CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-c
Confidence 3445666667788999999 666554432 156677666662 222 55666655 5557778664 33 2
Q ss_pred eeeeec------CC-cCeEEEEe--ecC-CCeEEEEeeCCCeEEEEcCC-------CCceeeeccccccCeEEEEECCCC
Q psy15995 222 VGEISG------QS-KPINSCDF--KPS-RPFRIITGSEDNTIAVFEGP-------PFKFKMTKQEHSRFVQAVRYSPSG 284 (683)
Q Consensus 222 ~~~~~~------~~-~~v~~~~~--~~~-~~~~l~~~~~d~~i~iw~~~-------~~~~~~~~~~~~~~v~~~~~~~~~ 284 (683)
+..+.. .. ..+..+++ +|. +...+++...+|.+..|++. +.+.+..+.. ...+..+...+..
T Consensus 113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~ 191 (355)
T 3amr_A 113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEY 191 (355)
T ss_dssp EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTT
T ss_pred eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCC
Confidence 433321 11 55667777 664 54458888888999999872 3344555543 3568888999888
Q ss_pred CEEEEEcCCCcEEEEeCC-----CCeeEEeccCCccccCeEEEEEc--cCCC-EEEEEE-CCCcEEEEECC-CCceeeEE
Q psy15995 285 SHFASAGFDGKVFLYDGA-----SADLVSELGNPAHKGGVYAVAWK--PDGT-QLLTAS-GDKTCKLWDIE-TKSVVSEF 354 (683)
Q Consensus 285 ~~l~~~~~dg~i~iw~~~-----~~~~~~~~~~~~~~~~i~~~~~~--~~~~-~l~~~~-~dg~i~iwd~~-~~~~~~~~ 354 (683)
..|+.+-++.-|..++.+ +++.+..+....-...+..|++. ++++ +|++++ .+..+.+||.+ +.+.+..|
T Consensus 192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 899999988777777754 34566555432234478888884 4555 566555 57789999997 66777776
Q ss_pred Eec
Q psy15995 355 IMG 357 (683)
Q Consensus 355 ~~~ 357 (683)
...
T Consensus 272 ~Ig 274 (355)
T 3amr_A 272 RIT 274 (355)
T ss_dssp EEC
T ss_pred Eec
Confidence 544
No 304
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.05 E-value=0.0014 Score=61.94 Aligned_cols=233 Identities=13% Similarity=0.112 Sum_probs=121.8
Q ss_pred CCeEEEeeCCCCCeEEEecCCeEEEEeCCCCccc--c---cccCcccceEEEEECCC---CcEEEEecC-C-----CCEE
Q psy15995 45 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAIS--D---IYTEHSCAVNVAKYSPS---GFYIASGDI-S-----GKVR 110 (683)
Q Consensus 45 ~~~~~~~~s~~~~~l~~~~~~~i~v~~~~~~~~~--~---~~~~h~~~v~~~~~s~d---~~~las~~~-d-----g~i~ 110 (683)
..+..+++.|||+++++...+.|.+++ +++.. . .+.........|+|+|| +.+|..+.. . +.|.
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 367789999999988888789999998 33321 1 11223456789999998 445544332 2 5688
Q ss_pred EEeCCCcccc---cccccccCCCCcccceeeeeecceeeeEeeccceEEEeecC-------------CccEEEEeccccc
Q psy15995 111 IWDTVNKEHI---LKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDI-------------SGKVRIWDTVNKE 174 (683)
Q Consensus 111 iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-------------d~~i~iwd~~~~~ 174 (683)
.++...+..- ..+...+.. .........++|.|||.+.++.+. .|.|.-++... +
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~--------~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~ 179 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPAR--------PHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-E 179 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCC--------TTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-S
T ss_pred EEEeCCCCcCceEEEEEeCCCC--------CCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-C
Confidence 8887643110 000000000 000123468999999976555332 14555555542 1
Q ss_pred eee----------e-ccccccCCCeeEEEEcCCCCeEEEEecCCce-----EEEEEEccCCC------------------
Q psy15995 175 HIL----------K-NEFHPIGGPIKDIAWSPDNQRMVVVGEGRER-----FGHVFMSETGT------------------ 220 (683)
Q Consensus 175 ~~~----------~-~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~-----~~~~~~~~~~~------------------ 220 (683)
... . ..+...-.....++|+|+...|.++...... .-.+.....+.
T Consensus 180 ~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~ 259 (352)
T 2ism_A 180 PAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRD 259 (352)
T ss_dssp BCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred CCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcC
Confidence 000 0 0000001236779999954445555544332 11233333332
Q ss_pred ceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCce------eeeccccccCeEEEEECCCCCEEEEEc
Q psy15995 221 SVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF------KMTKQEHSRFVQAVRYSPSGSHFASAG 291 (683)
Q Consensus 221 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~ 291 (683)
++..+ .+......++| .++. ++++....+.|...+.+.... ...+......+..+++.|||.+.++..
T Consensus 260 p~~~~-~~~~ap~G~~~-~~G~-l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 260 PLYFW-PQGFPPGNLAF-FRGD-LYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CSEEC-TTCCCEEEEEE-ETTE-EEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CeEec-CCCCCCcceEE-ECCE-EEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 11112 22234566777 3454 355555667777776553321 112212235688999999998666553
No 305
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.05 E-value=0.0063 Score=54.53 Aligned_cols=271 Identities=11% Similarity=0.112 Sum_probs=164.0
Q ss_pred CeEEEe----cCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCc
Q psy15995 57 KNFLYT----NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPI 132 (683)
Q Consensus 57 ~~l~~~----~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 132 (683)
+++..- .+..|.|.|+.++....+-.-. --+.-.+|..+.||--. ..++.|+|+++.+.+......
T Consensus 37 kyicVrE~~~~~~~VvIiDl~n~~~~~Rrpi~---AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~------ 106 (365)
T 2xzh_A 37 KFICIREKVGEQAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT------ 106 (365)
T ss_dssp TEEEEEEEETTEEEEEEEETTSTTSCEEEECC---CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS------
T ss_pred ceEEEEecCCCCCEEEEEECCCCCCccccccc---cceeeeCCCccEEEEec-CCeEEEechHHhhhhcceecC------
Confidence 455543 2348999999987654321111 12344688888887754 568999999999887776654
Q ss_pred ccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccce---eeeccccccCCCeeEEEEcCCCCeEEEEec---C
Q psy15995 133 KDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEH---ILKNEFHPIGGPIKDIAWSPDNQRMVVVGE---G 206 (683)
Q Consensus 133 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---~ 206 (683)
..|..-.|-.+.. |+..+ +..|.-|+++.... +..+...-....|..-..+++.++++..+- +
T Consensus 107 ---------e~VvfWkWis~~~-L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~ 175 (365)
T 2xzh_A 107 ---------DDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQ 175 (365)
T ss_dssp ---------SCEEEEEECSSSE-EEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEET
T ss_pred ---------CccEEEEecCCCe-EEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccC
Confidence 3344444444333 22222 35799999875322 111111112467888899999999988764 2
Q ss_pred CceEEEEEEccCCC-ceeeeecCCcCeEEEEeecC--CCeEEEEeeC---CCeEEEEcCCCC---ceee------ec---
Q psy15995 207 RERFGHVFMSETGT-SVGEISGQSKPINSCDFKPS--RPFRIITGSE---DNTIAVFEGPPF---KFKM------TK--- 268 (683)
Q Consensus 207 ~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~---d~~i~iw~~~~~---~~~~------~~--- 268 (683)
+...+.+-.....+ .-..+.+|......+.+..+ ...+++.+.. .+.+++.++... .... .+
T Consensus 176 ~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fpp 255 (365)
T 2xzh_A 176 NRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP 255 (365)
T ss_dssp TEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCT
T ss_pred CccceeEEEEeecccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCc
Confidence 32333333333322 33446667554433333221 1112222222 257888876322 1111 01
Q ss_pred cccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCC
Q psy15995 269 QEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK 348 (683)
Q Consensus 269 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 348 (683)
....+-..++..++.-..+..-+.-|.+++||++++.++..-+. ....|..-+...+..-++.....|.|.-..++..
T Consensus 256 ea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrI--S~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 256 EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI--SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp TCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred cccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEecc--CCCceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 12245567788888888888899999999999999999988776 6677777776666666777778888877776655
Q ss_pred ce
Q psy15995 349 SV 350 (683)
Q Consensus 349 ~~ 350 (683)
..
T Consensus 334 ~i 335 (365)
T 2xzh_A 334 NI 335 (365)
T ss_dssp TH
T ss_pred cE
Confidence 44
No 306
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.01 E-value=0.0017 Score=59.56 Aligned_cols=200 Identities=9% Similarity=0.114 Sum_probs=119.0
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEe------CC---eEEEEEc---CCeEEEEeCCCCcccCC
Q psy15995 413 DRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKAT------GE---LLYTCGI---DDTIKQVDLSSNAYSGP 480 (683)
Q Consensus 413 ~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~------~~---~l~~~~~---d~~i~~~~~~~~~~~~~ 480 (683)
...+++.....+-+.+||+ +++.+..... ..+..+... +. +.++... +++|.+|++......
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~---g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-- 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT---GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-- 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC---SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC--
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC---CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc--
Confidence 4456777777889999999 7777666532 334443333 22 2233333 578999977432110
Q ss_pred ceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCC-CCCcEEEE--ccC-CC-EEEEEcCCCcEEEEEcCC---
Q psy15995 481 EVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPID-YEPSSISL--DHE-HG-LVAVGGADSKVHIYELNN--- 552 (683)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~~--- 552 (683)
....... ...+... ..+..+|+ +|. ++ ++++...+|.+..|++..
T Consensus 113 l~~i~~~---------------------------~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~ 165 (355)
T 3amr_A 113 LQSMTDP---------------------------DHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKN 165 (355)
T ss_dssp EEECSCT---------------------------TSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTT
T ss_pred eeecccc---------------------------ccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCC
Confidence 0000000 0000011 45666777 664 43 688888899999999832
Q ss_pred C----ccCcceeecCCcCeeEEEECCCCCEEEEEeCCCeEEEEECC-----CCccccccceeeecccEEEEEe--cCCCC
Q psy15995 553 K----SLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP-----DFELAHNKEWGFHSAKVNCVAW--SPDSA 621 (683)
Q Consensus 553 ~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~-----~~~~~~~~~~~~h~~~v~~~~~--s~d~~ 621 (683)
+ +++.. +...+.+..|...+...+|+.+-++.-|..++.. +++++.....+.-...+..|++ .++++
T Consensus 166 g~~~~~lVR~--f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~ 243 (355)
T 3amr_A 166 GYISGKKVRA--FKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGK 243 (355)
T ss_dssp SCEEEEEEEE--EECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGC
T ss_pred CcccceEEEE--ecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCC
Confidence 2 22322 3345678899999999999999998777777754 2333322211212236888888 55666
Q ss_pred -eEEEee-cCCcEEEEeCC-CCceeeEee
Q psy15995 622 -LVASGS-LDTTIIIWSLA-SPAKHIIIK 647 (683)
Q Consensus 622 -~l~~~~-~d~~v~iw~~~-~~~~~~~~~ 647 (683)
+|++.+ .+.+..+||.+ +.+.+..+.
T Consensus 244 gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 244 GYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 565555 57799999997 555555553
No 307
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.01 E-value=0.0033 Score=57.08 Aligned_cols=160 Identities=8% Similarity=0.128 Sum_probs=109.3
Q ss_pred cccCeEEEEECCCCCEEEEEc-CCCcEEEEeCCCCeeEEeccCCc------cccCeEEEEE---ccCCCEEEEEE-----
Q psy15995 271 HSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGASADLVSELGNPA------HKGGVYAVAW---KPDGTQLLTAS----- 335 (683)
Q Consensus 271 ~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~------~~~~i~~~~~---~~~~~~l~~~~----- 335 (683)
......+++|.+....+..++ ..++|..|+...+..... ..+. ....+..+.| .|+++++++..
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 334455788988666666555 689999999876544333 2221 1124689999 68877776544
Q ss_pred --------CCCcEEEEECC---CCceeeEEEecC------------cceeceEEEEecCCEEEEEecC-CcEEEEecCCC
Q psy15995 336 --------GDKTCKLWDIE---TKSVVSEFIMGN------------QVEDQQVSCLWQGDYLLTVSLS-GFISYLDVNNP 391 (683)
Q Consensus 336 --------~dg~i~iwd~~---~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~-g~i~~~~~~~~ 391 (683)
.+..|..+|+. +++.+....... ......+...++|+..++++.. +.|..++....
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~ 169 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK 169 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence 25779999999 787766655331 1235677777889999988888 88877777643
Q ss_pred Ccceeeeee------ccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCC
Q psy15995 392 STPIRVIKG------HNKPITALALSPDRGTVFTGSHDGFITRWNAKT 433 (683)
Q Consensus 392 ~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~ 433 (683)
....+.. .....+.++++|+++.|++....|.+..+|+..
T Consensus 170 --~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 170 --TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp --CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred --EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 2222211 112366899999999999887799999999884
No 308
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.00 E-value=6e-05 Score=78.55 Aligned_cols=217 Identities=9% Similarity=-0.074 Sum_probs=125.7
Q ss_pred CCeEEEeeCCCCCeEEEe--cCCeEEEEeCCC----CcccccccCcccceEEEEECCCC-cEEEEecCCCCEEEEeCCCc
Q psy15995 45 GQPIVLGGDPKGKNFLYT--NGNSVIIRNIEN----PAISDIYTEHSCAVNVAKYSPSG-FYIASGDISGKVRIWDTVNK 117 (683)
Q Consensus 45 ~~~~~~~~s~~~~~l~~~--~~~~i~v~~~~~----~~~~~~~~~h~~~v~~~~~s~d~-~~las~~~dg~i~iwd~~~~ 117 (683)
..+..++|++++..|.++ ..+.|..+++.+ ......+.........|++.+.+ +++++-...+.|.+.++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 356678899988888887 357899999876 23333332233345678998654 44455456678999998755
Q ss_pred ccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecC--CccEEEEeccccceeeeccccccCCCeeEEEEcC
Q psy15995 118 EHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDI--SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP 195 (683)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 195 (683)
.....+... ......+++.|.+.+|+.... .+.|...++........ ....-.....|+|+|
T Consensus 486 ~~~~l~~~~--------------~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l--~~~~l~~PnGlavd~ 549 (699)
T 1n7d_A 486 KRKTLFREQ--------------GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL--VTENIQWPNGITLDL 549 (699)
T ss_dssp CEEEECCCS--------------SCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE--SCSSCSSCCCEEECT
T ss_pred ceEEEEeCC--------------CCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE--EeCCCCCccEEEEec
Confidence 322211111 134567888886655544432 36788877754322111 111124567899999
Q ss_pred CCCeEEEEecCCceEEEEEEccCCCceeeee--cCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeecccccc
Q psy15995 196 DNQRMVVVGEGRERFGHVFMSETGTSVGEIS--GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSR 273 (683)
Q Consensus 196 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~ 273 (683)
++..|+.+...... +..++.+.......+. ........+++..+ .++++....+.|..++..+++.+..+.....
T Consensus 550 ~~~~LY~aD~~~~~-I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~ 626 (699)
T 1n7d_A 550 LSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNLLAENLL 626 (699)
T ss_dssp TTCCEEEEETTTTE-EEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEECCCTTCS
T ss_pred cCCEEEEEecCCCe-EEEEccCCCceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceEEeecCCC
Confidence 98888887765433 4555554322221121 11223345555443 4566777778999999877777666643333
Q ss_pred CeEEEEE
Q psy15995 274 FVQAVRY 280 (683)
Q Consensus 274 ~v~~~~~ 280 (683)
....+++
T Consensus 627 ~P~~i~v 633 (699)
T 1n7d_A 627 SPEDMVL 633 (699)
T ss_dssp SCCCCCB
T ss_pred CCcEEEE
Confidence 3344443
No 309
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.87 E-value=0.0058 Score=55.49 Aligned_cols=202 Identities=12% Similarity=0.060 Sum_probs=125.7
Q ss_pred cCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeee-ccc----c--ccCeEEEEE---CCCCCEEEEEc--------
Q psy15995 230 KPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT-KQE----H--SRFVQAVRY---SPSGSHFASAG-------- 291 (683)
Q Consensus 230 ~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~-~~~----~--~~~v~~~~~---~~~~~~l~~~~-------- 291 (683)
.-..++.|++....++++.-..++|..|+...+..... +.. . ...+..+.+ .|+++++++..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 34457889886664445555799999999875543332 221 1 113578999 68877776543
Q ss_pred -----CCCcEEEEeCC---CCeeEEeccCCccc-----------cCeEEEEEccCCCEEEEEECC-CcEEEEECCCCcee
Q psy15995 292 -----FDGKVFLYDGA---SADLVSELGNPAHK-----------GGVYAVAWKPDGTQLLTASGD-KTCKLWDIETKSVV 351 (683)
Q Consensus 292 -----~dg~i~iw~~~---~~~~~~~~~~~~~~-----------~~i~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~ 351 (683)
.+..+..+|+. +++.+......... .....++..++|+..++++.. +.|...+.... .+
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~ 171 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TV 171 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CE
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EE
Confidence 25779999998 77776655432111 247899999999999988887 77777776644 33
Q ss_pred eEEEecC-----cceeceEEEEecCCEEEEEecCCcEEEEecCCCCc-ceeeee-ec---cccEEEE-EEeCCCCEEE-E
Q psy15995 352 SEFIMGN-----QVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPST-PIRVIK-GH---NKPITAL-ALSPDRGTVF-T 419 (683)
Q Consensus 352 ~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~-~~~~~~-~~---~~~v~~~-~~~~~~~~l~-~ 419 (683)
..+.... ......+.+.|++..|++....|.+..+|+..+.. ++..-. +. -.....+ ..-.+|+.++ +
T Consensus 172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~ 251 (334)
T 2p9w_A 172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVG 251 (334)
T ss_dssp EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEE
T ss_pred eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEE
Confidence 3332222 12245788999999999998899999999885322 111110 21 1223343 3334677744 4
Q ss_pred EeCCCcEEEEcCC
Q psy15995 420 GSHDGFITRWNAK 432 (683)
Q Consensus 420 ~~~dg~i~~w~~~ 432 (683)
....+.+.+.+..
T Consensus 252 ~~~~~~~~l~S~D 264 (334)
T 2p9w_A 252 ARAPYAISFRSWD 264 (334)
T ss_dssp EETTEEEEEECSS
T ss_pred cCCCCEEEEECCC
Confidence 4445555555433
No 310
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.87 E-value=0.013 Score=54.03 Aligned_cols=235 Identities=13% Similarity=0.013 Sum_probs=114.2
Q ss_pred CCCcEEEEec-CC-----CCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCC-----c
Q psy15995 95 PSGFYIASGD-IS-----GKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDIS-----G 163 (683)
Q Consensus 95 ~d~~~las~~-~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----~ 163 (683)
.+++.++.|+ .+ ..+.++|..+.+....-. .+ . ......+..-++..++.|+.+ .
T Consensus 13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~-~p--~-----------~r~~~~~~~~~~~l~v~GG~~~~~~~~ 78 (301)
T 2vpj_A 13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPS-IT--R-----------KRRYVASVSLHDRIYVIGGYDGRSRLS 78 (301)
T ss_dssp CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCC-CS--S-----------CCBSCEEEEETTEEEEECCBCSSCBCC
T ss_pred CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCC-CC--h-----------hhccccEEEECCEEEEEcCCCCCccCc
Confidence 3555666666 33 368889987765322111 00 0 001111223456777777754 4
Q ss_pred cEEEEeccccc---eeeeccccccCCCeeEEEEcCCCCeEEEEecCCc---eEEEEEEccCCCceeeeecCCcCeEEEEe
Q psy15995 164 KVRIWDTVNKE---HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE---RFGHVFMSETGTSVGEISGQSKPINSCDF 237 (683)
Q Consensus 164 ~i~iwd~~~~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 237 (683)
.+.+||+.+++ -.....++.....-..+.+ +++.++.++.... ..+.+++..+.+-...-..........+.
T Consensus 79 ~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~ 156 (301)
T 2vpj_A 79 SVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLV 156 (301)
T ss_dssp CEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEE
T ss_pred eEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEE
Confidence 68999988766 3222222221111122222 4555554443321 12455555444322111111111111111
Q ss_pred ecCCCeEEEEeeCC-----CeEEEEcCCCCceeeecc--ccccCeEEEEECCCCCEEEEEcCC-----CcEEEEeCCCCe
Q psy15995 238 KPSRPFRIITGSED-----NTIAVFEGPPFKFKMTKQ--EHSRFVQAVRYSPSGSHFASAGFD-----GKVFLYDGASAD 305 (683)
Q Consensus 238 ~~~~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~ 305 (683)
..++. +++.|+.+ ..+.+||..+.+....-. ........+.+ +++.++.|+.+ ..+.+||+.+.+
T Consensus 157 ~~~~~-iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 157 VASGV-IYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp EETTE-EEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EECCE-EEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 22444 46666654 468889987766544321 11111222222 56677777654 468999998887
Q ss_pred eEEeccCCccccCeEEEEEccCCCEEEEEECC-----CcEEEEECCCCce
Q psy15995 306 LVSELGNPAHKGGVYAVAWKPDGTQLLTASGD-----KTCKLWDIETKSV 350 (683)
Q Consensus 306 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 350 (683)
....-..+........+.+ +++.++.|+.+ ..+.+||+++.+.
T Consensus 234 W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 234 WTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp EEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred EEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 6554332222222222222 56777777655 3578888887654
No 311
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.86 E-value=0.0039 Score=58.92 Aligned_cols=227 Identities=13% Similarity=0.097 Sum_probs=116.0
Q ss_pred ceEEEEECCCCcEEEEecCCCCEEEEeCCCccc--ccccccccCCCCcccceeeeeecceeeeEeecc---ceEEEee-c
Q psy15995 87 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH--ILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSI---GFYIASG-D 160 (683)
Q Consensus 87 ~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~-~ 160 (683)
....++|.|||+++++ ..+|.|.+++ +++. +..+... .........++++|+ +.+|.++ .
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~-----------~~g~~~p~gia~~pdf~~~g~lYv~~~ 97 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVY-----------HRGESGLLGLALHPRFPQEPYVYAYRT 97 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCC-----------CSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEe-----------ecCCCCceeEEECCCCCCCCEEEEEEe
Confidence 4679999999986655 5668999998 3321 1111100 001145778999998 4444433 3
Q ss_pred CC-----ccEEEEeccccc-----eeeecccc---ccCCCeeEEEEcCCCCeEEEEecCCc---------eEEEEEEccC
Q psy15995 161 IS-----GKVRIWDTVNKE-----HILKNEFH---PIGGPIKDIAWSPDNQRMVVVGEGRE---------RFGHVFMSET 218 (683)
Q Consensus 161 ~d-----~~i~iwd~~~~~-----~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~~~~---------~~~~~~~~~~ 218 (683)
.. +.|..++...+. .+.. .+. ........++|.|||.+.++.+.... ....++..+.
T Consensus 98 ~~~~~~~~~v~r~~~~~~~~~~~~~l~~-~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~ 176 (352)
T 2ism_A 98 VAEGGLRNQVVRLRHLGERGVLDRVVLD-GIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTP 176 (352)
T ss_dssp ECTTSSEEEEEEEEECSSCEEEEEEEEE-EECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECT
T ss_pred cCCCCCccEEEEEEeCCCCcCceEEEEE-eCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcC
Confidence 22 678888876431 1111 121 11123468999999965554433211 1123333332
Q ss_pred -CC-------------ceeeeecCCcCeEEEEeec-CCCeEEEEee-CCC-------eEEEEcCCCCc------------
Q psy15995 219 -GT-------------SVGEISGQSKPINSCDFKP-SRPFRIITGS-EDN-------TIAVFEGPPFK------------ 263 (683)
Q Consensus 219 -~~-------------~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~-~d~-------~i~iw~~~~~~------------ 263 (683)
+. ....+...-.....++|+| ++.. +++-. .+. .|.+.. .+.
T Consensus 177 dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l-~v~d~g~~~~~~~~~dei~~i~--~G~nyGwp~~~g~~~ 253 (352)
T 2ism_A 177 EGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGEL-FSSEHGPSGEQGYGHDEVNLIV--PGGNYGWPRVVGRGN 253 (352)
T ss_dssp TSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCE-EEEEECC------CCCEEEEEC--TTCBCCTTTCCSCCC
T ss_pred CCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCE-EEEEcCCCCCCCCCCeEEEEec--cCCcCCCCcccCCCC
Confidence 21 1111111112356788999 5553 33322 222 233332 221
Q ss_pred ------eeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCee------EEeccCCccccCeEEEEEccCCCEE
Q psy15995 264 ------FKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADL------VSELGNPAHKGGVYAVAWKPDGTQL 331 (683)
Q Consensus 264 ------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l 331 (683)
....+. +......++| .+|..+++.-..+.|...+++.... ...+.. ....+..+++.|||.++
T Consensus 254 ~~~~~~p~~~~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~ly 329 (352)
T 2ism_A 254 DPRYRDPLYFWP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALY 329 (352)
T ss_dssp CTTSCCCSEECT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEE
T ss_pred CCCCcCCeEecC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEE
Confidence 111221 2234567777 5676666666667787777654321 111111 23578999999999766
Q ss_pred EEEE
Q psy15995 332 LTAS 335 (683)
Q Consensus 332 ~~~~ 335 (683)
++..
T Consensus 330 v~~~ 333 (352)
T 2ism_A 330 VTTS 333 (352)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 6653
No 312
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.85 E-value=0.015 Score=54.95 Aligned_cols=233 Identities=10% Similarity=0.055 Sum_probs=120.0
Q ss_pred cceEEEEECCCCcEEEEecCCCCEEEEeCCCcc-cccccccccCCCCcccceeeeeecceeeeEeecc----ceEEEeec
Q psy15995 86 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE-HILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSI----GFYIASGD 160 (683)
Q Consensus 86 ~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~----~~~l~~~~ 160 (683)
.....++|.|||+++++ ..+|.|.++| .+++ .+..+.... ........++++|+ +...++-.
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~-----------~g~~g~~gia~~pdf~~~g~lyv~~~ 95 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVAN-----------VGEAGLLGLALHPEFPKKSWVYLYAS 95 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCC-----------STTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceee-----------cCCCceeeEEeCCCCCcCCEEEEEEe
Confidence 34679999999985555 5568999997 3443 111111000 00145678899997 44334332
Q ss_pred C---C----ccEEEEecccc------ceeeeccccc-cCCCeeEEEEcCCCCeEEEEecCCc---------eEEEEEEcc
Q psy15995 161 I---S----GKVRIWDTVNK------EHILKNEFHP-IGGPIKDIAWSPDNQRMVVVGEGRE---------RFGHVFMSE 217 (683)
Q Consensus 161 ~---d----~~i~iwd~~~~------~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~~---------~~~~~~~~~ 217 (683)
. + +.|..|+.... .......+.. .......|+|.|||.+.++.+.... ....|+..+
T Consensus 96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~ 175 (354)
T 3a9g_A 96 YFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVD 175 (354)
T ss_dssp EECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEEC
T ss_pred ccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEc
Confidence 2 3 56777776653 1111111111 1123467999999976555443211 012333333
Q ss_pred C-CCc--------eeeeecCCcCeEEEEeec-CCCeEEEEee-CCC--eEEEEcCCCCc------------------eee
Q psy15995 218 T-GTS--------VGEISGQSKPINSCDFKP-SRPFRIITGS-EDN--TIAVFEGPPFK------------------FKM 266 (683)
Q Consensus 218 ~-~~~--------~~~~~~~~~~v~~~~~~~-~~~~~l~~~~-~d~--~i~iw~~~~~~------------------~~~ 266 (683)
. ++. ...+...-.....++|+| ++.. +++-. .+. .|.+.. .+. ...
T Consensus 176 ~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l-~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~ 252 (354)
T 3a9g_A 176 EEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVM-VATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVI 252 (354)
T ss_dssp TTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCE-EEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred CCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCE-EEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEe
Confidence 2 220 111111112356789999 5553 33322 221 233322 111 112
Q ss_pred eccccccCeEEEEEC-------CCCCEEEEEcCCCcEEEEeCCCC-eeE--EeccCCccccCeEEEEEccCCCEEEEEE
Q psy15995 267 TKQEHSRFVQAVRYS-------PSGSHFASAGFDGKVFLYDGASA-DLV--SELGNPAHKGGVYAVAWKPDGTQLLTAS 335 (683)
Q Consensus 267 ~~~~~~~~v~~~~~~-------~~~~~l~~~~~dg~i~iw~~~~~-~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 335 (683)
.+.........++|. .+|.++++.-..+.|...++... +.. ..+. ......+..+++.|||.+.++..
T Consensus 253 ~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 253 DTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-KNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp ECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-TTTSCCEEEEEECTTSCEEEEEC
T ss_pred ecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-cCCCCCeeEEEECCCCcEEEEEe
Confidence 221123457788884 56767766666778888887753 222 2221 11245789999999997666553
No 313
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.65 E-value=0.041 Score=51.65 Aligned_cols=226 Identities=12% Similarity=0.130 Sum_probs=145.0
Q ss_pred CCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCCccEEEEeccccceeeecccccc
Q psy15995 105 ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFHPI 184 (683)
Q Consensus 105 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 184 (683)
.+.+|.|-|+.++..+.+.... -.+...+|..+.||.=. ..++.|+|+++++.+....+.
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi~-----------------AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~-- 105 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPIS-----------------ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-- 105 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEECC-----------------CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS--
T ss_pred CCCeEEEEECCCCCcceecccc-----------------cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC--
Confidence 3347999999887654332222 12233455555555543 678999999998877666655
Q ss_pred CCCeeEEEEcCCCCeEEEEecCCceEEEEEEccC-CCceeeeecC----CcCeEEEEeecCCCeEEEEee------CCCe
Q psy15995 185 GGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSET-GTSVGEISGQ----SKPINSCDFKPSRPFRIITGS------EDNT 253 (683)
Q Consensus 185 ~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~------~d~~ 253 (683)
..|.--.|-.+. .|+.++... ++-|..+. ..+.+.+..| ...|..-..+++.++++++|- -.|.
T Consensus 106 -e~VvfWkWis~~-~l~lVT~ta---VyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~ 180 (494)
T 1bpo_A 106 -DDVTFWKWISLN-TVALVTDNA---VYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA 180 (494)
T ss_dssp -SCCCEEEEEETT-EEEEECSSE---EEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEE
T ss_pred -CCceEEEecCCC-eEEEEcCCe---eEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccce
Confidence 567777777554 555555542 45555542 3455556555 346777888999998777764 2578
Q ss_pred EEEEcCCCCceeeeccccccCeEEEEECCCC---CEEEEEcC---CCcEEEEeCCCC--------eeEEeccCC--cccc
Q psy15995 254 IAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG---SHFASAGF---DGKVFLYDGASA--------DLVSELGNP--AHKG 317 (683)
Q Consensus 254 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~---dg~i~iw~~~~~--------~~~~~~~~~--~~~~ 317 (683)
+.+|..+. +..+.+.+|......+....+. +.++.+.. .+++++-++... +....+..+ ...+
T Consensus 181 mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~D 259 (494)
T 1bpo_A 181 MQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND 259 (494)
T ss_dssp EEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTC
T ss_pred EEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccC
Confidence 88998654 4456777887665555443322 23444433 278888887543 111222211 2345
Q ss_pred CeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEe
Q psy15995 318 GVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIM 356 (683)
Q Consensus 318 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 356 (683)
-..++..++.-..++..+.-|.+.+||++++..+..-..
T Consensus 260 FPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI 298 (494)
T 1bpo_A 260 FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI 298 (494)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred ceeEEEecccCCEEEEEecCceEEEEecccceeeeeecc
Confidence 667888898888999999999999999999998766543
No 314
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.60 E-value=0.05 Score=51.34 Aligned_cols=242 Identities=11% Similarity=0.047 Sum_probs=125.3
Q ss_pred CCeEEEeeCCCCC-eEEEecCCeEEEEeCCCCc--cccc----ccCcccceEEEEECCC---CcEEEEe-cC-------C
Q psy15995 45 GQPIVLGGDPKGK-NFLYTNGNSVIIRNIENPA--ISDI----YTEHSCAVNVAKYSPS---GFYIASG-DI-------S 106 (683)
Q Consensus 45 ~~~~~~~~s~~~~-~l~~~~~~~i~v~~~~~~~--~~~~----~~~h~~~v~~~~~s~d---~~~las~-~~-------d 106 (683)
..+..|++.|||+ ++++...+.|.+++..... .+.. +.........++++|| +.+|..+ +. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 3678899999999 8877788899999854321 1111 1122446789999996 4444433 22 2
Q ss_pred CCEEEEeCCCcc-ccccc----ccccCCCCcccceeeeeecceeeeEeeccceEEEeecC-------------CccEEEE
Q psy15995 107 GKVRIWDTVNKE-HILKN----EFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDI-------------SGKVRIW 168 (683)
Q Consensus 107 g~i~iwd~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-------------d~~i~iw 168 (683)
..|..+++..+. .+... ...+.. .........++|.|||.+.++.+. .|.|.-+
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~--------~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri 169 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKL--------STGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRL 169 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCC--------BSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEE
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCC--------CCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEE
Confidence 246666664331 00000 000000 000122467999999976665433 2456556
Q ss_pred eccccce----e------eeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCc-----------------
Q psy15995 169 DTVNKEH----I------LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTS----------------- 221 (683)
Q Consensus 169 d~~~~~~----~------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~----------------- 221 (683)
+....-. . ....+...-.....++|.|+...|.++..+.+..-.+.....+..
T Consensus 170 ~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~ 249 (353)
T 2g8s_A 170 TDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI 249 (353)
T ss_dssp ETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred CCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence 6543200 0 000011111346789999954455555544322123332222211
Q ss_pred --------------eeeeecCCcCeEEEEeec-------CCCeEEEEeeCCCeEEEEcCCCCceeee---ccccccCeEE
Q psy15995 222 --------------VGEISGQSKPINSCDFKP-------SRPFRIITGSEDNTIAVFEGPPFKFKMT---KQEHSRFVQA 277 (683)
Q Consensus 222 --------------~~~~~~~~~~v~~~~~~~-------~~~~~l~~~~~d~~i~iw~~~~~~~~~~---~~~~~~~v~~ 277 (683)
+..+ .+......+.|.. ++. ++++....+.|...++..++.... +......+..
T Consensus 250 ~~~~~~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~-l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~ 327 (353)
T 2g8s_A 250 PEAKGEIVAGTEQPVFYW-KDSPAVSGMAFYNSDKFPQWQQK-LFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRD 327 (353)
T ss_dssp TTCCBSSCTTSCCCSEEE-SSCCCEEEEEEECCSSSGGGTTE-EEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEE
T ss_pred CcccCCCCCCccCCeEEe-CCCcCcceeEEECCccCcccCCc-EEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeE
Confidence 0011 1223566777764 344 366666677888777765543221 2223357899
Q ss_pred EEECCCCCEEEEEc-CCCcE
Q psy15995 278 VRYSPSGSHFASAG-FDGKV 296 (683)
Q Consensus 278 ~~~~~~~~~l~~~~-~dg~i 296 (683)
+++.|||.+.++.. .+|.|
T Consensus 328 v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 328 VRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp EEECTTSCEEEEECSTTEEE
T ss_pred EEECCCCcEEEEEeCCCCEE
Confidence 99999998555433 34433
No 315
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.59 E-value=0.014 Score=53.97 Aligned_cols=227 Identities=7% Similarity=-0.001 Sum_probs=115.0
Q ss_pred CEEEEEeC--CCcEEEEcCCCCCcceeccCCC-CcceeEEEEeCCeEEEEEcC----CeEEEEeCCCCcccCCceecCCC
Q psy15995 415 GTVFTGSH--DGFITRWNAKTGENDRVQGAGH-GNQINGMKATGELLYTCGID----DTIKQVDLSSNAYSGPEVKLGSQ 487 (683)
Q Consensus 415 ~~l~~~~~--dg~i~~w~~~~~~~~~~~~~~~-~~~v~~~~~~~~~l~~~~~d----~~i~~~~~~~~~~~~~~~~~~~~ 487 (683)
..++.|+. ...+..||..+.+......... ...-......+..++.|+.+ ..+.++|..+....
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~--------- 83 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWY--------- 83 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEE---------
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEE---------
Confidence 34445554 3578899988876544332211 11222223335555666644 55667776654321
Q ss_pred CceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCC------CcEEEEEcCCCccCcceee
Q psy15995 488 PRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGAD------SKVHIYELNNKSLSPKAEL 561 (683)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~ 561 (683)
....++....-.+++ .-++++++.|+.+ ..+.+||..+.+.......
T Consensus 84 --------------------------~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~ 136 (306)
T 3ii7_A 84 --------------------------SKLGPPTPRDSLAAC-AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSM 136 (306)
T ss_dssp --------------------------EEECCSSCCBSCEEE-EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCC
T ss_pred --------------------------ECCCCCccccceeEE-EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCC
Confidence 111111111112222 2366777777765 4589999988764432222
Q ss_pred cCCcCeeEEEECCCCCEEEEEeC---------CCeEEEEECCCCccccccceeeecccEEEEEecCCCCeEEEeecCC--
Q psy15995 562 DHLGPVTDCSFSPSNEYLVASDA---------HRKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDT-- 630 (683)
Q Consensus 562 ~~~~~v~~~~~s~~~~~l~~~~~---------d~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~-- 630 (683)
.....-.+++. -++++++.|+. ...+.+||..+.+.............-..+.+ ++++++.|+.++
T Consensus 137 p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~ 213 (306)
T 3ii7_A 137 LTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLG 213 (306)
T ss_dssp SSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTE
T ss_pred cCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCC
Confidence 21111111222 26677777653 35588999988765433222101111112222 677888877643
Q ss_pred ---cEEEEeCCCCceeeEeecCCCCCCeeEEEEccCCeEEEeeCC-----CcEEEEeec
Q psy15995 631 ---TIIIWSLASPAKHIIIKNAHPQSQITRLQWLDNDLLVSVGQD-----CNTKIWEIA 681 (683)
Q Consensus 631 ---~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d-----~~v~vw~~~ 681 (683)
.+.+||+.+.+-...-........ .+++..++.+++.+|.+ ..+.+||++
T Consensus 214 ~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~ 271 (306)
T 3ii7_A 214 GLDNVEYYDIKLNEWKMVSPMPWKGVT-VKCAAVGSIVYVLAGFQGVGRLGHILEYNTE 271 (306)
T ss_dssp EBCCEEEEETTTTEEEECCCCSCCBSC-CEEEEETTEEEEEECBCSSSBCCEEEEEETT
T ss_pred CCceEEEeeCCCCcEEECCCCCCCccc-eeEEEECCEEEEEeCcCCCeeeeeEEEEcCC
Confidence 588999988754433222111112 23333477788888855 346666654
No 316
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.59 E-value=0.016 Score=53.55 Aligned_cols=220 Identities=12% Similarity=0.076 Sum_probs=105.1
Q ss_pred CeEEEEeCCCCcccc--cccCcccceEEEEECCCCcEEEEecCC-----CCEEEEeCCCcc---cccccccccCCCCccc
Q psy15995 65 NSVIIRNIENPAISD--IYTEHSCAVNVAKYSPSGFYIASGDIS-----GKVRIWDTVNKE---HILKNEFHPIGGPIKD 134 (683)
Q Consensus 65 ~~i~v~~~~~~~~~~--~~~~h~~~v~~~~~s~d~~~las~~~d-----g~i~iwd~~~~~---~~~~~~~~~~~~~~~~ 134 (683)
..+.+||+.+.+-.. .+......-.++. .+++.++.|+.+ ..+.++|..+.+ .... .+...+
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~---~~~p~~--- 102 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSV---APMNVR--- 102 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEE---CCCSSC---
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEEC---CCCCCC---
Confidence 478889988765221 1221111112222 367777777754 358999988765 2111 110000
Q ss_pred ceeeeeecceeeeEeeccceEEEeecCC-----ccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCc-
Q psy15995 135 IGTLLSLTSIRNILVLSIGFYIASGDIS-----GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE- 208 (683)
Q Consensus 135 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~- 208 (683)
..-..+ ..-+++.++.|+.+ ..+.+||+.+++-......+..... .+++. -+++.++.++.+..
T Consensus 103 -------r~~~~~-~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~ 172 (301)
T 2vpj_A 103 -------RGLAGA-TTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG-AGLVV-ASGVIYCLGGYDGLN 172 (301)
T ss_dssp -------CBSCEE-EEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS-CEEEE-ETTEEEEECCBCSSC
T ss_pred -------ccceeE-EEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCccc-ceEEE-ECCEEEEECCCCCCc
Confidence 111111 22367777777654 3588899887653322222211111 12222 25555555443321
Q ss_pred --eEEEEEEccCCCceee--eecCCcCeEEEEeecCCCeEEEEeeCC-----CeEEEEcCCCCceeeeccc--cccCeEE
Q psy15995 209 --RFGHVFMSETGTSVGE--ISGQSKPINSCDFKPSRPFRIITGSED-----NTIAVFEGPPFKFKMTKQE--HSRFVQA 277 (683)
Q Consensus 209 --~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~--~~~~v~~ 277 (683)
..+.+++..+.+-... +.........+. -++. +++.|+.+ ..+.+||..+.+....-.. ......+
T Consensus 173 ~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~ 249 (301)
T 2vpj_A 173 ILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDH-IYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGA 249 (301)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTE-EEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred ccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCE-EEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeE
Confidence 2245555554432111 111111111222 2344 57777664 4688999887765443221 1111222
Q ss_pred EEECCCCCEEEEEcCC-----CcEEEEeCCCCeeE
Q psy15995 278 VRYSPSGSHFASAGFD-----GKVFLYDGASADLV 307 (683)
Q Consensus 278 ~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~ 307 (683)
+.+ +++.++.|+.+ ..+.+||.++.+..
T Consensus 250 ~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 250 TVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp EEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred EEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 222 56677777655 35788888776554
No 317
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.51 E-value=0.034 Score=51.67 Aligned_cols=111 Identities=15% Similarity=0.194 Sum_probs=62.3
Q ss_pred cCCCEEEEEcC-C-----CcEEEEEcCCCccCcceeecCC-cCeeEEEECCCCCEEEEEeCCC-----eEEEEECCCCcc
Q psy15995 531 HEHGLVAVGGA-D-----SKVHIYELNNKSLSPKAELDHL-GPVTDCSFSPSNEYLVASDAHR-----KVVLYRVPDFEL 598 (683)
Q Consensus 531 ~~~~~l~~~~~-d-----g~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~-----~i~i~~~~~~~~ 598 (683)
.++++++.|+. + ..+.+||..+.+.......... ..-.++. -+++.++.|+.++ .+.+||..+.+.
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 224 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKW 224 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeE
Confidence 46667777765 2 4689999988754432222211 1112222 2677777777544 588999988765
Q ss_pred ccccceeeecccEEEEEecCCCCeEEEeecCC--------------cEEEEeCCCCceeeE
Q psy15995 599 AHNKEWGFHSAKVNCVAWSPDSALVASGSLDT--------------TIIIWSLASPAKHII 645 (683)
Q Consensus 599 ~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~--------------~v~iw~~~~~~~~~~ 645 (683)
...............+.+ ++++++.|+.++ .+.+||+++.+-...
T Consensus 225 ~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 225 APFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred EECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 433222101111122222 677888887642 477899887765444
No 318
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.45 E-value=0.017 Score=62.99 Aligned_cols=270 Identities=10% Similarity=0.162 Sum_probs=157.8
Q ss_pred CCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEecCcceeceEEEEecCC
Q psy15995 293 DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGD 372 (683)
Q Consensus 293 dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (683)
..+|.|.|+.++..+..... .--+.-.+|..+.++.-. ..++.++|+++...+..+....+ ..-+-|-..
T Consensus 47 ~~~vvIidl~~~~~~~rrpi-----~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~----VvfWkWis~ 116 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI-----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD----VTFWKWISL 116 (1630)
T ss_pred CceEEEEECCCCCCcccccc-----cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCC----ceEEEecCC
Confidence 34788888888665432211 122344677777666554 67899999999988877766543 233334333
Q ss_pred EEEEEecCCcEEEEecCCCCcceeeeeec----cccEEEEEEeCCCCEEEEEe-------CCCcEEEEcCCCCCcceecc
Q psy15995 373 YLLTVSLSGFISYLDVNNPSTPIRVIKGH----NKPITALALSPDRGTVFTGS-------HDGFITRWNAKTGENDRVQG 441 (683)
Q Consensus 373 ~l~~~~~~g~i~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-------~dg~i~~w~~~~~~~~~~~~ 441 (683)
..+.--.+..|..|++.....|.+.+..| ...|..-..+++.++++..+ -.|.+.+|..+.+.....
T Consensus 117 ~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~i-- 194 (1630)
T 1xi4_A 117 NTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI-- 194 (1630)
T ss_pred CeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhh--
Confidence 34444456789999998767777777666 45677888899999988443 347788888776543322
Q ss_pred CCCCcceeEEEEe----CCeEEEEEc----CCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCc
Q psy15995 442 AGHGNQINGMKAT----GELLYTCGI----DDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGA 513 (683)
Q Consensus 442 ~~~~~~v~~~~~~----~~~l~~~~~----d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (683)
.+|...-..+... ...+++-.. .+.+.+.++.......+ ........+.++++
T Consensus 195 egha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~--~f~kk~~~~~~~~~----------------- 255 (1630)
T 1xi4_A 195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ--PFPKKAVDVFFPPE----------------- 255 (1630)
T ss_pred hHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCC--CCccccccccCCcc-----------------
Confidence 3344433333333 112222221 37888888865411111 00000111111110
Q ss_pred eeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEeCCCeEEEEEC
Q psy15995 514 KVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 593 (683)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~ 593 (683)
....-+.++.+++....+..-+.-|.+.+||+.++..+....+. ..+|-..+......=++.....|.|.--.+
T Consensus 256 -----~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris-~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v 329 (1630)
T 1xi4_A 256 -----AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS-GETIFVTAPHEATAGIIGVNRKGQVLSVCV 329 (1630)
T ss_pred -----cccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcccc-CCceEEeccCCCCCceEEEcCCceEEEEEE
Confidence 01234567889999999999999999999999999887555442 223333333333223334446666666665
Q ss_pred CCCccc
Q psy15995 594 PDFELA 599 (683)
Q Consensus 594 ~~~~~~ 599 (683)
....++
T Consensus 330 ~~~~iv 335 (1630)
T 1xi4_A 330 EEENII 335 (1630)
T ss_pred ccchhh
Confidence 554443
No 319
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.44 E-value=0.059 Score=49.67 Aligned_cols=190 Identities=12% Similarity=0.123 Sum_probs=93.2
Q ss_pred cceEEEeecCC-----ccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCc-eE--EEEEEccCCCce-
Q psy15995 152 IGFYIASGDIS-----GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE-RF--GHVFMSETGTSV- 222 (683)
Q Consensus 152 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~-~~--~~~~~~~~~~~~- 222 (683)
++..++.|+.+ ..+.+||..+.+-.....++..... .+++. -+++.+++++.+.. .. +.+++..+.+-.
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRST-LGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccc-eEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 66777777654 3588899887653332222221111 12222 25555555554322 22 334444333211
Q ss_pred -eeeecCCcCeEEEEeecCCCeEEEEeeCC-------CeEEEEcCCCCceeeec--cccccCeEEEEECCCCCEEEEEcC
Q psy15995 223 -GEISGQSKPINSCDFKPSRPFRIITGSED-------NTIAVFEGPPFKFKMTK--QEHSRFVQAVRYSPSGSHFASAGF 292 (683)
Q Consensus 223 -~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------~~i~iw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~ 292 (683)
..+....... +++. -++. +++.|+.+ ..+.+||..+.+....- .........+.+ +++.++.|+.
T Consensus 139 ~~~~p~~r~~~-~~~~-~~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 213 (302)
T 2xn4_A 139 VAPMNTRRSSV-GVGV-VGGL-LYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGH 213 (302)
T ss_dssp ECCCSSCCBSC-EEEE-ETTE-EEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred cCCCCCcccCc-eEEE-ECCE-EEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCC
Confidence 1111111111 2222 2444 46666542 45888998776644322 111111222222 5667777765
Q ss_pred C-----CcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCC-----cEEEEECCCCce
Q psy15995 293 D-----GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK-----TCKLWDIETKSV 350 (683)
Q Consensus 293 d-----g~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~ 350 (683)
+ ..+.+||..+.+....-..+........+. -+++.++.|+.++ .+.+||+.+.+-
T Consensus 214 ~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 214 DGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp SSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 4 468999998876654433221211222222 2567777776553 478888887653
No 320
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.44 E-value=0.0061 Score=57.08 Aligned_cols=153 Identities=11% Similarity=0.049 Sum_probs=96.4
Q ss_pred eeCCCCCeEEEecCCeEEEEeCCCCcccccccCc----ccceEEEEECCCCcEEEEecCCCCEEEEeCCCccccccccc-
Q psy15995 51 GGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEH----SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF- 125 (683)
Q Consensus 51 ~~s~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~h----~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~- 125 (683)
....+|..++++.++.|+.-++.....-+.++-. -..|..+..||+|++||..+.. .|.|-.+..+.....-..
T Consensus 27 ~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 27 FSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp EEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHH
T ss_pred EEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCccccc
Confidence 3578889999999999999888754433444322 2368889999999999998655 799988884421111000
Q ss_pred -ccCCCCcccce--eeeeecceeeeEeecc---ceEEEeecCCccEEEEeccccceeee--------ccccccCCCeeEE
Q psy15995 126 -HPIGGPIKDIG--TLLSLTSIRNILVLSI---GFYIASGDISGKVRIWDTVNKEHILK--------NEFHPIGGPIKDI 191 (683)
Q Consensus 126 -~~~~~~~~~~~--~~~~~~~i~~~~~s~~---~~~l~~~~~d~~i~iwd~~~~~~~~~--------~~~~~~~~~i~~~ 191 (683)
.+.....-.++ .......|..+.|.|- +..|++-..|+.|++||+........ +........|.++
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEE
Confidence 00000000000 0112367999999995 45899999999999999986321111 1111222567888
Q ss_pred EEcCCCCeEEEEe
Q psy15995 192 AWSPDNQRMVVVG 204 (683)
Q Consensus 192 ~~s~~~~~l~~~~ 204 (683)
+|.+++-.|.+..
T Consensus 186 ~Fg~~~lTLYvl~ 198 (452)
T 3pbp_A 186 EFSKDGLTLYCLN 198 (452)
T ss_dssp EECTTSSCEEEEE
T ss_pred EEcCCCcEEEEEe
Confidence 9988877777655
No 321
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.44 E-value=0.026 Score=52.89 Aligned_cols=146 Identities=13% Similarity=0.152 Sum_probs=92.2
Q ss_pred EEccCCCEEEEEcCCCcEEEEEcCCCccCcceeecC---CcCeeEEEECCCCCEEEEEeCCCeEEEEECCCCccccc---
Q psy15995 528 SLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDH---LGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAHN--- 601 (683)
Q Consensus 528 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~--- 601 (683)
....++..++++- ++.||.-++......+.....+ ...|..+..+|+|++||..+ +..|.|-.++.+.....
T Consensus 27 ~~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 27 FSSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp EEETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHH
T ss_pred EEEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccc
Confidence 3445555555543 3678888877543222233332 33688999999999999986 45799999984321111
Q ss_pred -------ccee------eecccEEEEEecCC---CCeEEEeecCCcEEEEeCCCCceee-Eee-------cCCCCCCeeE
Q psy15995 602 -------KEWG------FHSAKVNCVAWSPD---SALVASGSLDTTIIIWSLASPAKHI-IIK-------NAHPQSQITR 657 (683)
Q Consensus 602 -------~~~~------~h~~~v~~~~~s~d---~~~l~~~~~d~~v~iw~~~~~~~~~-~~~-------~~~~~~~v~~ 657 (683)
..+. ....+|..+.|+|- +..|++-..|+.|++||+....... .+. .......|.+
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEE
Confidence 0111 02467999999994 5689999999999999998633211 221 1112368899
Q ss_pred EEEccCC-eEE--EeeCCCcE
Q psy15995 658 LQWLDND-LLV--SVGQDCNT 675 (683)
Q Consensus 658 l~~~~~~-~l~--s~~~d~~v 675 (683)
++|..+. .|. +..+.|.|
T Consensus 185 ~~Fg~~~lTLYvl~~t~~GDI 205 (452)
T 3pbp_A 185 LEFSKDGLTLYCLNTTEGGDI 205 (452)
T ss_dssp EEECTTSSCEEEEECTTSCEE
T ss_pred EEEcCCCcEEEEEecCCCCCE
Confidence 9999443 333 45577755
No 322
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.44 E-value=0.021 Score=53.18 Aligned_cols=205 Identities=16% Similarity=0.188 Sum_probs=114.3
Q ss_pred eEEEEECCCCcEEEEe------------cCCCCEEEEeCCCcc-cccccccccCCCCcccceeeeeecceeeeEeec--c
Q psy15995 88 VNVAKYSPSGFYIASG------------DISGKVRIWDTVNKE-HILKNEFHPIGGPIKDIGTLLSLTSIRNILVLS--I 152 (683)
Q Consensus 88 v~~~~~s~d~~~las~------------~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~ 152 (683)
...+++.|+|..++++ ..+|.|.++|.++.. ...++........ ........+.+.+ +
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~-------~~~f~PhGi~~~~d~d 124 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLD-------ISSFNPHGISTFIDDD 124 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCC-------GGGCCEEEEEEEECTT
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCC-------cCceeeeeeEEEECCC
Confidence 3466678888666555 268899999987431 1222222110000 0012345556555 3
Q ss_pred ce-EEEee-cC--CccEEEEeccccc--eeeeccccc-cCCCeeEEEEcCCCCeEEEEec---C----------CceEEE
Q psy15995 153 GF-YIASG-DI--SGKVRIWDTVNKE--HILKNEFHP-IGGPIKDIAWSPDNQRMVVVGE---G----------RERFGH 212 (683)
Q Consensus 153 ~~-~l~~~-~~--d~~i~iwd~~~~~--~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~---~----------~~~~~~ 212 (683)
+. +|.++ .. +.+|.+|++.... ......+.. .-...+++++.++|.+.+.... + ......
T Consensus 125 g~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~ 204 (355)
T 3sre_A 125 NTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSF 204 (355)
T ss_dssp CCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEE
T ss_pred CcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccE
Confidence 43 34333 22 5678888776532 222222221 2256789999999986665321 0 112355
Q ss_pred EEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCC-Cce--eeeccccccCeEEEEECC-CCCEEE
Q psy15995 213 VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP-FKF--KMTKQEHSRFVQAVRYSP-SGSHFA 288 (683)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~-~~~--~~~~~~~~~~v~~~~~~~-~~~~l~ 288 (683)
++..+.++ +..+...-...+.++|+|+++.+.++-+..+.|..|++.. ++. ...+ ......-.+++.+ +|++.+
T Consensus 205 vyr~d~~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwv 282 (355)
T 3sre_A 205 VTYYSPND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWV 282 (355)
T ss_dssp EEEECTTC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEE
T ss_pred EEEEECCe-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEE
Confidence 66666553 3334444456789999999998677777889999999753 322 1222 2245567788888 588666
Q ss_pred EEcCC-CcEEEEeC
Q psy15995 289 SAGFD-GKVFLYDG 301 (683)
Q Consensus 289 ~~~~d-g~i~iw~~ 301 (683)
++..+ +.|..|+.
T Consensus 283 a~~~~g~~v~~~~P 296 (355)
T 3sre_A 283 GCHPNGMRIFFYDA 296 (355)
T ss_dssp EEESCHHHHHSCCT
T ss_pred EecCCceEEEEECC
Confidence 55433 34444543
No 323
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.44 E-value=0.021 Score=52.75 Aligned_cols=146 Identities=15% Similarity=0.136 Sum_probs=78.9
Q ss_pred CCCEEEEEcCCC-----cEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEeC-------CCeEEEEECCCCccc
Q psy15995 532 EHGLVAVGGADS-----KVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDA-------HRKVVLYRVPDFELA 599 (683)
Q Consensus 532 ~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------d~~i~i~~~~~~~~~ 599 (683)
++++++.|+.++ .+.+||..+.+............-.+++. -+++.++.|+. ...+.+||..+.+..
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 186 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWT 186 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence 567777776543 47889988776443222221111112222 26677777654 245889999876654
Q ss_pred cccceeeecccEEEEEecCCCCeEEEeecCC-----cEEEEeCCCCceeeEeecCCCCCCeeEEEEccCCeEEEeeCCC-
Q psy15995 600 HNKEWGFHSAKVNCVAWSPDSALVASGSLDT-----TIIIWSLASPAKHIIIKNAHPQSQITRLQWLDNDLLVSVGQDC- 673 (683)
Q Consensus 600 ~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~-----~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~- 673 (683)
..............+.+ ++++++.|+.++ .+.+||+.+.+-.......... .-.+++..++.+++.+|.++
T Consensus 187 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r-~~~~~~~~~~~i~v~GG~~~~ 263 (302)
T 2xn4_A 187 YIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCR-RNAGVCAVNGLLYVVGGDDGS 263 (302)
T ss_dssp EECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCC-BSCEEEEETTEEEEECCBCSS
T ss_pred ECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcc-ccCeEEEECCEEEEECCcCCC
Confidence 32221101111112222 678888887653 6899999887654332221111 11233444777888888664
Q ss_pred ----cEEEEeec
Q psy15995 674 ----NTKIWEIA 681 (683)
Q Consensus 674 ----~v~vw~~~ 681 (683)
.+.+||++
T Consensus 264 ~~~~~v~~yd~~ 275 (302)
T 2xn4_A 264 CNLASVEYYNPT 275 (302)
T ss_dssp SBCCCEEEEETT
T ss_pred cccccEEEEcCC
Confidence 36777664
No 324
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.43 E-value=0.075 Score=49.27 Aligned_cols=240 Identities=12% Similarity=0.026 Sum_probs=120.7
Q ss_pred cccceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeecc---ceEEEee-
Q psy15995 84 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSI---GFYIASG- 159 (683)
Q Consensus 84 h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~- 159 (683)
.-...+.|+|.|||+++++--..|.|++++..+++... +..-+ .+ ..........++++|+ +.+|...
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~-v~~~~---~v----~~~g~~GllGia~~Pdf~~~g~lYv~y 101 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTE-LGEVP---GV----SPSGEGGLLGIALSPDYASDHMVYAYF 101 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-EEECT---TC----CCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEee-ecccC---ce----eecCCCCceeeEeccccccCCEEEEEE
Confidence 33456799999999988776558999999866553211 10000 00 0011145678999985 3333322
Q ss_pred --cCCccEEEEecccc----------ceeeeccccccCCCeeEEEEcCCCCeEEEEecCCc---------eEEEEEEcc-
Q psy15995 160 --DISGKVRIWDTVNK----------EHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE---------RFGHVFMSE- 217 (683)
Q Consensus 160 --~~d~~i~iwd~~~~----------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~---------~~~~~~~~~- 217 (683)
..++.|.-|.+..+ +.+..............|+|.|||.+.++.+.... ....|+..+
T Consensus 102 t~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~ 181 (347)
T 3das_A 102 TSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTP 181 (347)
T ss_dssp ECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECT
T ss_pred ecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeC
Confidence 23455666665542 11111111111224567999999976666553211 112333333
Q ss_pred CCC--------ceeeee-cCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCce------------------eeeccc
Q psy15995 218 TGT--------SVGEIS-GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF------------------KMTKQE 270 (683)
Q Consensus 218 ~~~--------~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~------------------~~~~~~ 270 (683)
.++ ....+. +| .....++|+|++.....--+.++.=.|--+..+.. +..+..
T Consensus 182 dG~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~ 260 (347)
T 3das_A 182 DGEPAPGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWST 260 (347)
T ss_dssp TSSBCTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECT
T ss_pred CCCccCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCC
Confidence 222 011111 22 23567899998763222223333222222111111 111111
Q ss_pred cccCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCee----EEeccCCccccCeEEEEEccCCCEEEEEE
Q psy15995 271 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADL----VSELGNPAHKGGVYAVAWKPDGTQLLTAS 335 (683)
Q Consensus 271 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 335 (683)
+......++|. +|..+...-..+.|....++.... ...+. .....+..++..|||.++++..
T Consensus 261 ~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~--~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 261 DEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLE--GEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEEST--TTSSCEEEEEEEETTEEEEEEC
T ss_pred CCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeec--CCCCCccEEEECCCCcEEEEEc
Confidence 22345667766 455566555566777666655432 12222 1346899999999997666644
No 325
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.34 E-value=0.098 Score=48.51 Aligned_cols=237 Identities=9% Similarity=0.031 Sum_probs=123.0
Q ss_pred CCeEEEeeCCCCCeEEEec-CCeEEEEeCCCCcccc------cccCcccceEEEEECCC----CcEEEEe--cCCCCEEE
Q psy15995 45 GQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISD------IYTEHSCAVNVAKYSPS----GFYIASG--DISGKVRI 111 (683)
Q Consensus 45 ~~~~~~~~s~~~~~l~~~~-~~~i~v~~~~~~~~~~------~~~~h~~~v~~~~~s~d----~~~las~--~~dg~i~i 111 (683)
..+..|++.|||+++++.. .|.|.+++..+++... .+.........|+++|| +.+.++- ..++.|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 3678899999999999887 8999999876654321 12234567899999995 4433332 23445666
Q ss_pred EeCCCccc----ccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecC-------------CccEEEEeccccc
Q psy15995 112 WDTVNKEH----ILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDI-------------SGKVRIWDTVNKE 174 (683)
Q Consensus 112 wd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-------------d~~i~iwd~~~~~ 174 (683)
|.+..+.. +...+. -+..+.. ........|+|.|||.+.++.+. .|.|.-.+....-
T Consensus 112 ~~~~~~~~~~~~~~~~~~-----i~~~~p~-~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDT-----VFRGIPK-GVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP 185 (347)
T ss_dssp EEBCTTSCTTCCBCCCEE-----EEEEECC-CSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred EEeCCCCcccccCCCcEE-----EEEcCCC-CCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence 66554211 000000 0000000 01134567999999986666432 2444444443210
Q ss_pred ----ee--eeccccccCCCeeEEEEcCCCCeEEEEecCCceEEEEEEccCCCc------------------eeeeecCCc
Q psy15995 175 ----HI--LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTS------------------VGEISGQSK 230 (683)
Q Consensus 175 ----~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~ 230 (683)
.. ...-..++ .....++|.|+|++. ++..+.+..-.+.....|.. +..+..+..
T Consensus 186 p~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~-~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ 263 (347)
T 3das_A 186 APGNPFPGSPVYSYGH-RNVQGLAWDDKQRLF-ASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA 263 (347)
T ss_dssp CTTCSSTTCCEEEBCC-SBCCEEEECTTCCEE-EEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred cCCCCCCCCeEEeeCC-CCcceEEECCCCCEE-EEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence 00 00001111 346789999987644 44433322223333333221 111122223
Q ss_pred CeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCce----eeeccccccCeEEEEECCCCCEEEEEc
Q psy15995 231 PINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF----KMTKQEHSRFVQAVRYSPSGSHFASAG 291 (683)
Q Consensus 231 ~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~ 291 (683)
....++|.. +. +++..-..+.|....+...+. ...+.+....+..++..|||.++++..
T Consensus 264 ap~G~~~~~-g~-~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 264 SPSGIAYAE-GS-VWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CEEEEEEET-TE-EEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCcceEEEc-Cc-eeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 456677764 33 355555556666555544322 223344456789999999987555443
No 326
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.30 E-value=0.11 Score=48.03 Aligned_cols=232 Identities=12% Similarity=-0.023 Sum_probs=113.5
Q ss_pred CcEEEEecC--CCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCC----ccEEEEec
Q psy15995 97 GFYIASGDI--SGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDIS----GKVRIWDT 170 (683)
Q Consensus 97 ~~~las~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----~~i~iwd~ 170 (683)
+..++.|+. ...+.++|..+.+-...-.. + . ......+..-++..++.|+.+ ..+.+||.
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~-p--~-----------~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~ 77 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCP-F--E-----------KRRDAACVFWDNVVYILGGSQLFPIKRMDCYNV 77 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCC-S--C-----------CCBSCEEEEETTEEEEECCBSSSBCCEEEEEET
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCC-C--c-----------ccceeEEEEECCEEEEEeCCCCCCcceEEEEeC
Confidence 345556654 35689999887753321110 0 0 001111222366677777754 66889999
Q ss_pred cccceeeeccccccCCCeeEEEEcCCCCeEEEEecC-C---ceEEEEEEccCCCcee--eeecCCcCeEEEEeecCCCeE
Q psy15995 171 VNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG-R---ERFGHVFMSETGTSVG--EISGQSKPINSCDFKPSRPFR 244 (683)
Q Consensus 171 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~---~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~ 244 (683)
.+++-.....++.....-....+ +++.+++++.+ . ...+.+++..+.+-.. .+......- +++. -++. +
T Consensus 78 ~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~-i 152 (306)
T 3ii7_A 78 VKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSH-GMVE-ANGL-I 152 (306)
T ss_dssp TTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTE-E
T ss_pred CCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCccee-EEEE-ECCE-E
Confidence 88754332222221111122222 45555554432 1 1124555555443211 111111111 1122 2444 4
Q ss_pred EEEeeC---------CCeEEEEcCCCCceeeeccc--cccCeEEEEECCCCCEEEEEcCC-----CcEEEEeCCCCeeEE
Q psy15995 245 IITGSE---------DNTIAVFEGPPFKFKMTKQE--HSRFVQAVRYSPSGSHFASAGFD-----GKVFLYDGASADLVS 308 (683)
Q Consensus 245 l~~~~~---------d~~i~iw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~ 308 (683)
++.|+. -..+.+||..+.+....-.. ....-..+.+ +++.++.|+.+ ..+.+||..+.+...
T Consensus 153 yv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 230 (306)
T 3ii7_A 153 YVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM 230 (306)
T ss_dssp EEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEE
T ss_pred EEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEE
Confidence 666653 34588899877764433211 1111122222 56667776653 468999998876654
Q ss_pred eccCCccccCeEEEEEccCCCEEEEEECC-----CcEEEEECCCCcee
Q psy15995 309 ELGNPAHKGGVYAVAWKPDGTQLLTASGD-----KTCKLWDIETKSVV 351 (683)
Q Consensus 309 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~ 351 (683)
.-..+........+.+ +++.++.|+.+ ..+.+||+.+.+-.
T Consensus 231 ~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 231 VSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp CCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred CCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 4332222222233333 56777777754 45888998876644
No 327
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.27 E-value=0.13 Score=48.50 Aligned_cols=62 Identities=15% Similarity=0.110 Sum_probs=40.0
Q ss_pred cCeEEEEECC-------CCCEEEEEcCCCcEEEEeCCCCeeEEeccC-CccccCeEEEEEccCCCEEEEE
Q psy15995 273 RFVQAVRYSP-------SGSHFASAGFDGKVFLYDGASADLVSELGN-PAHKGGVYAVAWKPDGTQLLTA 334 (683)
Q Consensus 273 ~~v~~~~~~~-------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~ 334 (683)
..+..++|.. +|+++++.-..+.|...+++.++....... ......+..+++.|||.++++.
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence 3566777763 466777666778888888776544322111 1123578999999999865543
No 328
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.27 E-value=0.084 Score=48.79 Aligned_cols=235 Identities=11% Similarity=0.078 Sum_probs=111.8
Q ss_pred eeCCCCCeEEEec-----CCeEEEEeCCCCccccc--ccCcccceEEEEECCCCcEEEEecC----C-----CCEEEEeC
Q psy15995 51 GGDPKGKNFLYTN-----GNSVIIRNIENPAISDI--YTEHSCAVNVAKYSPSGFYIASGDI----S-----GKVRIWDT 114 (683)
Q Consensus 51 ~~s~~~~~l~~~~-----~~~i~v~~~~~~~~~~~--~~~h~~~v~~~~~s~d~~~las~~~----d-----g~i~iwd~ 114 (683)
+..-+++++++|. -..+.+||..+.+-... +......-..+. .+++.++.|+. + ..+.++|.
T Consensus 20 ~~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 20 APKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV--VGGLLYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp -CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCEEEETTEEEECCCEEEEET
T ss_pred ccCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE--ECCEEEEECCCcCCCCCCeecceEEEECC
Confidence 3455666666664 24788999887643211 111111111222 26777777765 2 36889998
Q ss_pred CCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecCC-----ccEEEEeccccceeeeccccccCCCee
Q psy15995 115 VNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDIS-----GKVRIWDTVNKEHILKNEFHPIGGPIK 189 (683)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~i~ 189 (683)
.+.+....-.. + .+ ..-..+ ..-+++.++.|+.+ ..+.+||+.+.+-.....++.....-.
T Consensus 98 ~~~~W~~~~~~-p--~~----------r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 163 (308)
T 1zgk_A 98 MTNQWSPCAPM-S--VP----------RNRIGV-GVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVG 163 (308)
T ss_dssp TTTEEEECCCC-S--SC----------CBTCEE-EEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCE
T ss_pred CCCeEeECCCC-C--cC----------ccccEE-EEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceE
Confidence 87643221110 0 00 011111 22266777777644 358889988765332222222111112
Q ss_pred EEEEcCCCCeEEEEecCCc---eEEEEEEccCCCce--eeeecCCcCeEEEEeecCCCeEEEEeeCC-----CeEEEEcC
Q psy15995 190 DIAWSPDNQRMVVVGEGRE---RFGHVFMSETGTSV--GEISGQSKPINSCDFKPSRPFRIITGSED-----NTIAVFEG 259 (683)
Q Consensus 190 ~~~~s~~~~~l~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~iw~~ 259 (683)
.+.+ +++.++.++.+.. ..+.+++..+.+-. ..+......-..+.+ ++. +++.|+.+ ..+.+||.
T Consensus 164 ~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~ 238 (308)
T 1zgk_A 164 VAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNC-IYAAGGYDGQDQLNSVERYDV 238 (308)
T ss_dssp EEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEET
T ss_pred EEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCE-EEEEeCCCCCCccceEEEEeC
Confidence 2222 4544444443321 12455555443211 111111111122222 444 57777654 56889998
Q ss_pred CCCceeeecc--ccccCeEEEEECCCCCEEEEEcCC-----CcEEEEeCCCCeeEE
Q psy15995 260 PPFKFKMTKQ--EHSRFVQAVRYSPSGSHFASAGFD-----GKVFLYDGASADLVS 308 (683)
Q Consensus 260 ~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~ 308 (683)
.+.+....-. ........+.+ +++.++.|+.+ ..+.+||+.+.+...
T Consensus 239 ~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 292 (308)
T 1zgk_A 239 ETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDTWSE 292 (308)
T ss_dssp TTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCEEee
Confidence 8766544321 11111222222 56677777643 357888887776543
No 329
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.26 E-value=0.072 Score=49.51 Aligned_cols=112 Identities=14% Similarity=0.184 Sum_probs=61.0
Q ss_pred cCCCEEEEEcC------CCcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEeCC-----CeEEEEECCCCccc
Q psy15995 531 HEHGLVAVGGA------DSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH-----RKVVLYRVPDFELA 599 (683)
Q Consensus 531 ~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~i~i~~~~~~~~~ 599 (683)
.++++++.|+. -..+.+||..+.+............-.+++. -+++.++.|+.+ ..+.+||+.+.+..
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 235 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWE 235 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence 46677777764 2358999998876443222221111112222 266777777643 35778999876654
Q ss_pred cccceeeecccEEEEEecCCCCeEEEeecC--------------CcEEEEeCCCCceeeE
Q psy15995 600 HNKEWGFHSAKVNCVAWSPDSALVASGSLD--------------TTIIIWSLASPAKHII 645 (683)
Q Consensus 600 ~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d--------------~~v~iw~~~~~~~~~~ 645 (683)
..............+ ..++++++.|+.+ ..+.+||+.+.+-...
T Consensus 236 ~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 236 VMTEFPQERSSISLV--SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp ECCCCSSCCBSCEEE--EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred ECCCCCCcccceEEE--EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 332221011111122 2367788887754 3578888887665444
No 330
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.18 E-value=0.14 Score=47.16 Aligned_cols=234 Identities=12% Similarity=0.076 Sum_probs=113.3
Q ss_pred CCCcEEEEecCC----CCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEeecC----C----
Q psy15995 95 PSGFYIASGDIS----GKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASGDI----S---- 162 (683)
Q Consensus 95 ~d~~~las~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----d---- 162 (683)
-+++.++.|+.+ ..+.++|..+.+....-. .+ .+ ..-..++ .-++..++.|+. +
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~-~p--~~----------r~~~~~~-~~~~~lyv~GG~~~~~~~~~~ 88 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLAD-LQ--VP----------RSGLAGC-VVGGLLYAVGGRNNSPDGNTD 88 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCC-CS--SC----------CBSCEEE-EETTEEEEECCEEEETTEEEE
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCC-CC--cc----------cccceEE-EECCEEEEECCCcCCCCCCee
Confidence 456667777632 358889987765332211 00 00 0111122 236667777765 2
Q ss_pred -ccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCCc---eEEEEEEccCCCce--eeeecCCcCeEEEE
Q psy15995 163 -GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE---RFGHVFMSETGTSV--GEISGQSKPINSCD 236 (683)
Q Consensus 163 -~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~v~~~~ 236 (683)
..+.+||+.+++-.....++.....-....+ +++.+++++.+.. ..+.+++..+.+-. ..+......-..+.
T Consensus 89 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 166 (308)
T 1zgk_A 89 SSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV 166 (308)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred cceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE
Confidence 4688899887653322222221112222222 4555554442221 12445555443211 11111111112222
Q ss_pred eecCCCeEEEEeeCC-----CeEEEEcCCCCceeeecc--ccccCeEEEEECCCCCEEEEEcCC-----CcEEEEeCCCC
Q psy15995 237 FKPSRPFRIITGSED-----NTIAVFEGPPFKFKMTKQ--EHSRFVQAVRYSPSGSHFASAGFD-----GKVFLYDGASA 304 (683)
Q Consensus 237 ~~~~~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~ 304 (683)
+ ++. +++.|+.+ ..+.+||..+.+....-. .....-.++.+ +++.++.|+.+ ..+.+||+.+.
T Consensus 167 ~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 167 L--NRL-LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp E--TTE-EEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred E--CCE-EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 2 444 46666654 458888887765443221 11111222233 56677777654 56999999888
Q ss_pred eeEEeccCCccccCeEEEEEccCCCEEEEEECC-----CcEEEEECCCCcee
Q psy15995 305 DLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD-----KTCKLWDIETKSVV 351 (683)
Q Consensus 305 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~ 351 (683)
+....-..+........+.+ +++.++.|+.+ ..+.+||+.+.+..
T Consensus 242 ~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 242 TWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred cEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 76554332222222222222 56777777644 34778888876543
No 331
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.08 E-value=0.033 Score=60.85 Aligned_cols=253 Identities=14% Similarity=0.117 Sum_probs=141.7
Q ss_pred eCCCCCeEEEecCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCCc-ccccccccccCCC
Q psy15995 52 GDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK-EHILKNEFHPIGG 130 (683)
Q Consensus 52 ~s~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~-~~~~~~~~~~~~~ 130 (683)
.+|..+.||.-.+..+.|+|+++.+.++.+.- ..+|.-=.|-.+. .|+-.+. ..|.-|++... .+...+..++.
T Consensus 73 MnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT~-~aVyHW~~~~~s~P~k~fdR~~~-- 147 (1630)
T 1xi4_A 73 MNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVTD-NAVYHWSMEGESQPVKMFDRHSS-- 147 (1630)
T ss_pred cCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEcC-CeEEEeccCCCCccHHHHhcchh--
Confidence 58999999999999999999999988776653 3456666776555 3444333 36999999753 23333333321
Q ss_pred CcccceeeeeecceeeeEeeccceEEEeec-------CCccEEEEeccccceeeeccccccCCCeeEEEEcC--CCCeEE
Q psy15995 131 PIKDIGTLLSLTSIRNILVLSIGFYIASGD-------ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP--DNQRMV 201 (683)
Q Consensus 131 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~ 201 (683)
+ ....|.....+++.+|++..+ -.|.+.+|+.+.+. ...+.+|.+.-..+.... ....+.
T Consensus 148 -------L-~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~---sQ~iegha~~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 148 -------L-AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV---SQPIEGHAASFAQFKMEGNAEESTLF 216 (1630)
T ss_pred -------c-ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc---chhhhHhHhhhheeccCCCCCCceEE
Confidence 1 125677778888888887533 35889999987653 233444433332222221 111121
Q ss_pred EEecCCceEEEEEEccCCCceeeeecCCcCeEEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccccccCeEEEEEC
Q psy15995 202 VVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYS 281 (683)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~ 281 (683)
+.......-..+...+-+.....-.........+-|.| ....+...++..+
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~-----------------------------~~~~Dfpv~~~vs 267 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP-----------------------------EAQNDFPVAMQIS 267 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCc-----------------------------ccccCcceEEEec
Confidence 11111000001111111100000000000011111111 1123445678888
Q ss_pred CCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCcee
Q psy15995 282 PSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVV 351 (683)
Q Consensus 282 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 351 (683)
+.-..+...+.-|.+.++|+.++.++..-+. ...+|...+......-++.....|.|.-..+.....+
T Consensus 268 ~k~g~iy~itk~G~~~~~d~~t~~~i~~~ri--s~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 268 EKHDVVFLITKYGYIHLYDLETGTCIYMNRI--SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred cccCEEEEEecCceEEEEecccchhhhhccc--cCCceEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 8878888888899999999999998877654 5566666665554445666667777766666554443
No 332
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.07 E-value=0.022 Score=54.08 Aligned_cols=115 Identities=10% Similarity=0.070 Sum_probs=55.2
Q ss_pred CCCEEEEEcC------CCcEEEEEc--CCCccCcceeecCC-cCeeEEEECCCCCEEEEEeCC-----------------
Q psy15995 532 EHGLVAVGGA------DSKVHIYEL--NNKSLSPKAELDHL-GPVTDCSFSPSNEYLVASDAH----------------- 585 (683)
Q Consensus 532 ~~~~l~~~~~------dg~i~i~d~--~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d----------------- 585 (683)
++++++.|+. ...+..||+ .+.+.......... ......+...++++++.|+.+
T Consensus 200 ~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~ 279 (357)
T 2uvk_A 200 GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHE 279 (357)
T ss_dssp TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTT
T ss_pred CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccc
Confidence 5667777654 345777876 44433222111111 111111223366777777632
Q ss_pred -----CeEEEEECCCCccccccceeeecccEEEEEecCCCCeEEEeecCC------cEEEEeCCCCceeeEeec
Q psy15995 586 -----RKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGSLDT------TIIIWSLASPAKHIIIKN 648 (683)
Q Consensus 586 -----~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~------~v~iw~~~~~~~~~~~~~ 648 (683)
..+.+||+.+.+........ .......+...++++++.|+.++ .|.++++++++.......
T Consensus 280 ~~~~~~~~~~yd~~~~~W~~~~~~p--~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~ 351 (357)
T 2uvk_A 280 GLKKSYSTDIHLWHNGKWDKSGELS--QGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLE 351 (357)
T ss_dssp TCCCEECCEEEECC---CEEEEECS--SCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred cccceeeEEEEecCCCceeeCCCCC--CCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence 25789999876654322211 11111122334788888888653 466678888776655443
No 333
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.04 E-value=0.2 Score=46.39 Aligned_cols=215 Identities=10% Similarity=0.039 Sum_probs=103.7
Q ss_pred EEEeecCCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEec-----CC--ceE--EEEEEccCCCceeee
Q psy15995 155 YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGE-----GR--ERF--GHVFMSETGTSVGEI 225 (683)
Q Consensus 155 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-----~~--~~~--~~~~~~~~~~~~~~~ 225 (683)
.++.|+ ..+.+||..+++-.. ..++.........+...+++.++.++. .. ... +..++..+++- ..+
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W-~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW-LGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE-EEC
T ss_pred EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE-EEC
Confidence 444555 578999998876432 222211123333344456676666663 11 111 33444444321 111
Q ss_pred ecCCcCe--EEEEeecCCCeEEEEeeCC--------CeEEEEcCCCCceeeecc--ccccCeEEEEECCCCCEEEEEcC-
Q psy15995 226 SGQSKPI--NSCDFKPSRPFRIITGSED--------NTIAVFEGPPFKFKMTKQ--EHSRFVQAVRYSPSGSHFASAGF- 292 (683)
Q Consensus 226 ~~~~~~v--~~~~~~~~~~~~l~~~~~d--------~~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~- 292 (683)
..-..+- .+++.. ++. +++.|+.+ ..+.+||..+.+....-. .....-..+. .+++.++.|+.
T Consensus 83 ~~~p~~r~~~~~~~~-~~~-lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 158 (315)
T 4asc_A 83 PPLPSPRCLFGLGEA-LNS-IYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKG 158 (315)
T ss_dssp CCBSSCEESCEEEEE-TTE-EEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBC
T ss_pred CCCCcchhceeEEEE-CCE-EEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCC
Confidence 1111111 111222 343 46666632 458889987765443221 1111112222 35666777765
Q ss_pred C-----CcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCC-----cEEEEECCCCceeeEEEecCccee
Q psy15995 293 D-----GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK-----TCKLWDIETKSVVSEFIMGNQVED 362 (683)
Q Consensus 293 d-----g~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~ 362 (683)
+ ..+.+||..+.+....-..+.....-..+.+ +++.++.|+.++ .+.+||+.+.+-...-.. .....
T Consensus 159 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~ 235 (315)
T 4asc_A 159 SDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAF-PQERS 235 (315)
T ss_dssp TTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCC-SSCCB
T ss_pred CCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCC-CCccc
Confidence 2 4689999988766544332222222222222 567777777654 488899987754332111 11122
Q ss_pred ceEEEEecCCEEEEEecC
Q psy15995 363 QQVSCLWQGDYLLTVSLS 380 (683)
Q Consensus 363 ~~~~~~~~~~~l~~~~~~ 380 (683)
....+..++..++.|+.+
T Consensus 236 ~~~~~~~~~~l~v~GG~~ 253 (315)
T 4asc_A 236 SLSLVSLVGTLYAIGGFA 253 (315)
T ss_dssp SCEEEEETTEEEEEEEEE
T ss_pred ceeEEEECCEEEEECCcc
Confidence 222333466666666653
No 334
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.04 E-value=0.28 Score=47.96 Aligned_cols=113 Identities=12% Similarity=0.105 Sum_probs=60.1
Q ss_pred ceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeecc---ceEE-EeecC-
Q psy15995 87 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSI---GFYI-ASGDI- 161 (683)
Q Consensus 87 ~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l-~~~~~- 161 (683)
..+.|+|.|||+++++-...+.|++++..+++.......... . ...........++|+|+ +.+| ++-+.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~---~---~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~ 101 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEI---V---NDADGQNGLLGFAFHPDFKNNPYIYISGTFK 101 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTC---C---CCTTSSCSEEEEEECTTTTTSCEEEEEEEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCcc---c---cccCCCCceeEEEECCCcCcCCEEEEEEecc
Confidence 557999999999887754445688887654432111111100 0 00001145668999995 4444 33321
Q ss_pred -----------CccEEEEecccc-------ceeeeccccccCCCeeEEEEcCCCCeEEEEec
Q psy15995 162 -----------SGKVRIWDTVNK-------EHILKNEFHPIGGPIKDIAWSPDNQRMVVVGE 205 (683)
Q Consensus 162 -----------d~~i~iwd~~~~-------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 205 (683)
...|.-+++..+ +.+..............|+|.|||.+.++.+.
T Consensus 102 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 102 NPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234555555332 11111111111234789999999987777664
No 335
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.04 E-value=0.27 Score=47.86 Aligned_cols=267 Identities=9% Similarity=0.079 Sum_probs=142.8
Q ss_pred EEEEEcCCCcEEEEeCCCCeeEEeccCCc-----------------------cccCeE--EEEEc---cCCCEEEEEEC-
Q psy15995 286 HFASAGFDGKVFLYDGASADLVSELGNPA-----------------------HKGGVY--AVAWK---PDGTQLLTASG- 336 (683)
Q Consensus 286 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-----------------------~~~~i~--~~~~~---~~~~~l~~~~~- 336 (683)
.+.+|+..|.|+++-+.+++.+..+.... ..+... .+++. .||++|+.-..
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 36788899999999999998877764310 011122 23332 26778888764
Q ss_pred CCcEEEEECCCCceeeEEEecCcceeceEEEE--ecCCEEEEEecCCcEE-----EEecCCCCcceeee---eeccc---
Q psy15995 337 DKTCKLWDIETKSVVSEFIMGNQVEDQQVSCL--WQGDYLLTVSLSGFIS-----YLDVNNPSTPIRVI---KGHNK--- 403 (683)
Q Consensus 337 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~g~i~-----~~~~~~~~~~~~~~---~~~~~--- 403 (683)
+..+...++...+.-+.+..........+.+. |+..+++++++...-. ...+..... ...+ .+..-
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~-y~~f~~iD~~tm~v~ 230 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENS-YTMYNAIDAETMEMA 230 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTE-EEEEEEEETTTCSEE
T ss_pred CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhh-ceEEEEEcCCccEEE
Confidence 56688889998888777777766666666665 5778888887632110 011111111 0111 11111
Q ss_pred -------cEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEEe--------CCeEEEEEcCC-eE
Q psy15995 404 -------PITALALSPDRGTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKAT--------GELLYTCGIDD-TI 467 (683)
Q Consensus 404 -------~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~l~~~~~d~-~i 467 (683)
....+...+++++.++.+.+. +.+.............+..+.+. |+.-. .++ .+
T Consensus 231 ~Qv~v~gnld~~~~~~~g~~af~t~yNs-------E~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~---~~g~gv 300 (638)
T 3sbq_A 231 FQVIVDGNLDNTDADYTGRFAAATCYNS-------EKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFIT---LGDSKT 300 (638)
T ss_dssp EEEEESSCCCCEEECSSSSEEEEEESCT-------TCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBC---CTTCCC
T ss_pred EEEEcCCChhhcCCCCCCCEEEEeeecc-------ccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEE---ECCCCe
Confidence 111222334444444444321 11111111111111111111111 11110 010 23
Q ss_pred EEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcC-CCcEE
Q psy15995 468 KQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGA-DSKVH 546 (683)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~ 546 (683)
.+.|.+.... ........+|....+..+.++|||+++++++. +.++.
T Consensus 301 ~ViD~~~~~~--------------------------------~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvt 348 (638)
T 3sbq_A 301 PVLDGRKKDG--------------------------------KDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCS 348 (638)
T ss_dssp CEEECSCBTT--------------------------------BCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEE
T ss_pred eEEccccccc--------------------------------cCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEE
Confidence 3333332000 00123445566778899999999999988765 78899
Q ss_pred EEEcCCCc------c-Cc----ceeecCCcCeeEEEECCCCCEEEEEeCCCeEEEEECCC
Q psy15995 547 IYELNNKS------L-SP----KAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 595 (683)
Q Consensus 547 i~d~~~~~------~-~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~ 595 (683)
++|++.-. + .+ .....-.......+|.++|.-..+-.-|.+|.-|++..
T Consensus 349 V~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 349 MIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp EEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred EEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEEeccH
Confidence 99987421 1 00 11122345678899999996556667899999999974
No 336
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.94 E-value=0.25 Score=46.00 Aligned_cols=197 Identities=19% Similarity=0.198 Sum_probs=113.5
Q ss_pred ceeeeEeeccceEEEee------------cCCccEEEEeccccc-eeeeccccc-----cCCCeeEEEEcC--CCC-eEE
Q psy15995 143 SIRNILVLSIGFYIASG------------DISGKVRIWDTVNKE-HILKNEFHP-----IGGPIKDIAWSP--DNQ-RMV 201 (683)
Q Consensus 143 ~i~~~~~s~~~~~l~~~------------~~d~~i~iwd~~~~~-~~~~~~~~~-----~~~~i~~~~~s~--~~~-~l~ 201 (683)
....+++.|+|..++++ ..+|.|.++|+.+.. ......+.. .......+.+.+ +++ +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34566778887665555 268999999987421 112222222 234667777766 454 566
Q ss_pred EEecCC-ceEEEEEEccCCCc----eeeeecC-CcCeEEEEeecCCCeEEEEee-----------------CCCeEEEEc
Q psy15995 202 VVGEGR-ERFGHVFMSETGTS----VGEISGQ-SKPINSCDFKPSRPFRIITGS-----------------EDNTIAVFE 258 (683)
Q Consensus 202 ~~~~~~-~~~~~~~~~~~~~~----~~~~~~~-~~~v~~~~~~~~~~~~l~~~~-----------------~d~~i~iw~ 258 (683)
++.... ...+.++..+.+.. +..+.+. -...+.+.+.++|.+ .++.. ..|.+..++
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~f-yvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHF-YATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEE-EEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCE-EecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 654442 34466777665422 2223222 345789999999974 44432 124455555
Q ss_pred CCCCceeeeccccccCeEEEEECCCCCEEEEEc-CCCcEEEEeCCC-Cee--EEeccCCccccCeEEEEEcc-CCCEEEE
Q psy15995 259 GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGAS-ADL--VSELGNPAHKGGVYAVAWKP-DGTQLLT 333 (683)
Q Consensus 259 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~-~~~--~~~~~~~~~~~~i~~~~~~~-~~~~l~~ 333 (683)
. ++.. .+...-...+.++|+||++.|+.+. ..+.|..|++.. ++. ...+. ..+..-.+++.+ +|++.++
T Consensus 210 ~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G~lwva 283 (355)
T 3sre_A 210 P--NDVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTGDLWVG 283 (355)
T ss_dssp T--TCCE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTCCEEEE
T ss_pred C--CeEE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCCcEEEE
Confidence 4 3322 2222334578899999998776654 578899999863 332 12222 245677889998 5887776
Q ss_pred EECC-CcEEEEECC
Q psy15995 334 ASGD-KTCKLWDIE 346 (683)
Q Consensus 334 ~~~d-g~i~iwd~~ 346 (683)
+..+ +.|..|+..
T Consensus 284 ~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 284 CHPNGMRIFFYDAE 297 (355)
T ss_dssp EESCHHHHHSCCTT
T ss_pred ecCCceEEEEECCC
Confidence 6543 234444443
No 337
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.83 E-value=0.31 Score=45.19 Aligned_cols=213 Identities=11% Similarity=0.069 Sum_probs=105.9
Q ss_pred EEEeeCCCeEEEEcCCCCceeeec-cccccCeEEEEECCCCCEEEEEcC----CC-------cEEEEeCCCCeeEEeccC
Q psy15995 245 IITGSEDNTIAVFEGPPFKFKMTK-QEHSRFVQAVRYSPSGSHFASAGF----DG-------KVFLYDGASADLVSELGN 312 (683)
Q Consensus 245 l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~----dg-------~i~iw~~~~~~~~~~~~~ 312 (683)
++.|+. .+..||..+.+....- ..............++..++.|+. ++ .+..||..+.+....-..
T Consensus 19 ~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 96 (318)
T 2woz_A 19 LLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPL 96 (318)
T ss_dssp EEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCB
T ss_pred hhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCC
Confidence 455553 3788888777654421 111122233334567778888873 12 177889888776544322
Q ss_pred CccccCeEEEEEccCCCEEEEEECC-------CcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEEEec------
Q psy15995 313 PAHKGGVYAVAWKPDGTQLLTASGD-------KTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSL------ 379 (683)
Q Consensus 313 ~~~~~~i~~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------ 379 (683)
+.....-..+.+ +++.++.|+.+ ..+.+||+.+.+....-..... .........++..++.|+.
T Consensus 97 p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~ 173 (318)
T 2woz_A 97 PSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIK-VYGHNVISHNGMIYCLGGKTDDKKC 173 (318)
T ss_dssp SSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSC-EESCEEEEETTEEEEECCEESSSCB
T ss_pred CccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCc-ccccEEEEECCEEEEEcCCCCCCCc
Confidence 222222222222 56777777754 2478888887654332211111 2222333356666677664
Q ss_pred CCcEEEEecCCCCc-ceeeeeeccccEEEEEEeCCCCEEEEEeCC-----CcEEEEcCCCCCcceeccCCCCc-ceeEEE
Q psy15995 380 SGFISYLDVNNPST-PIRVIKGHNKPITALALSPDRGTVFTGSHD-----GFITRWNAKTGENDRVQGAGHGN-QINGMK 452 (683)
Q Consensus 380 ~g~i~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~w~~~~~~~~~~~~~~~~~-~v~~~~ 452 (683)
...+..||+....- .+..+....... +++. -+++.++.|+.+ ..+.+||+.+.+........... ....+.
T Consensus 174 ~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 251 (318)
T 2woz_A 174 TNRVFIYNPKKGDWKDLAPMKTPRSMF-GVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS 251 (318)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE
T ss_pred cceEEEEcCCCCEEEECCCCCCCcccc-eEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE
Confidence 23588888875321 111111111111 2222 256677777643 35778998887655443222211 122233
Q ss_pred EeCCeEEEEEcC
Q psy15995 453 ATGELLYTCGID 464 (683)
Q Consensus 453 ~~~~~l~~~~~d 464 (683)
..+..++.|+.+
T Consensus 252 ~~~~i~v~GG~~ 263 (318)
T 2woz_A 252 LAGSLYAIGGFA 263 (318)
T ss_dssp ETTEEEEECCBC
T ss_pred ECCEEEEECCee
Confidence 335555665543
No 338
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.76 E-value=0.018 Score=48.45 Aligned_cols=142 Identities=9% Similarity=-0.007 Sum_probs=83.2
Q ss_pred CeEEEeeCCCCCeEEEecCCeEEEEeCCCCcccccccCcccce--------EEEEECCCCcEEEEecCCCCEEEEeCCCc
Q psy15995 46 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAV--------NVAKYSPSGFYIASGDISGKVRIWDTVNK 117 (683)
Q Consensus 46 ~~~~~~~s~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~h~~~v--------~~~~~s~d~~~las~~~dg~i~iwd~~~~ 117 (683)
....++|+|+|.+.+. .++.++-.+..+..... +-+-...| .++.|.|+|.+.++ .||.|.-|+-.+.
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~-W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDN-WMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCC-HHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCccc-ccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence 5668999999998888 77888777765533221 11123334 78999999988888 5588887775332
Q ss_pred ccccccccccCCCCcccceeee---eecceeeeEeeccceEEEeecCCccEEEEeccccceee---ecc-cc-ccCCCee
Q psy15995 118 EHILKNEFHPIGGPIKDIGTLL---SLTSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHIL---KNE-FH-PIGGPIK 189 (683)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~-~~-~~~~~i~ 189 (683)
..-.-+ ..+... ....+..+.+.|+|.+-++. |+.+.-+....+.... ... +. ..-....
T Consensus 118 ~~~~Wl----------~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr 185 (236)
T 1tl2_A 118 DTDNWI----------ARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFK 185 (236)
T ss_dssp TTCCHH----------HHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEE
T ss_pred CCCcee----------ccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEE
Confidence 111000 000111 12567899999999887777 6665433332211000 000 00 1112345
Q ss_pred EEEEcCCCCeEEEE
Q psy15995 190 DIAWSPDNQRMVVV 203 (683)
Q Consensus 190 ~~~~s~~~~~l~~~ 203 (683)
.+.|.|++...++.
T Consensus 186 ~l~f~~~G~l~~v~ 199 (236)
T 1tl2_A 186 FLFFSSVGTLFGVQ 199 (236)
T ss_dssp EEEECTTSCEEEEE
T ss_pred EEEECCCCcEEEEe
Confidence 57789988877776
No 339
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.72 E-value=0.089 Score=44.32 Aligned_cols=146 Identities=12% Similarity=-0.002 Sum_probs=83.1
Q ss_pred CCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCcceeecCCcC--------eeEEEECCCCCEEEEEeCCCeEEEEECC
Q psy15995 523 EPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGP--------VTDCSFSPSNEYLVASDAHRKVVLYRVP 594 (683)
Q Consensus 523 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--------v~~~~~s~~~~~l~~~~~d~~i~i~~~~ 594 (683)
.+..++++|++.+.++ .+|.++-.+..+.....-. +.... -.++.|.|+|.+.++ .||.|+-++-+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~--~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWM--GRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHH--HHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCccccc--ccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 5679999999987777 6776666554432211100 11122 378999999988888 56988888765
Q ss_pred CCcc---ccccceeeec---ccEEEEEecCCCCeEEEeecCCcEEEEeCCCCcee-----eEeecCCCCCCeeEEEEccC
Q psy15995 595 DFEL---AHNKEWGFHS---AKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKH-----IIIKNAHPQSQITRLQWLDN 663 (683)
Q Consensus 595 ~~~~---~~~~~~~~h~---~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~ 663 (683)
+... +.....- .. ..+..|.|.|+|.+-+.. |+.++-+...+.... ........-..-+.+.|.++
T Consensus 116 ~~~~~~Wl~~a~~v-g~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~ 192 (236)
T 1tl2_A 116 QSDTDNWIARATEV-GSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSV 192 (236)
T ss_dssp CSTTCCHHHHSEEE-ECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTT
T ss_pred cCCCCceeccccEe-ccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCC
Confidence 4221 1111110 12 568999999999888777 777554444322211 11111011223344667765
Q ss_pred CeEEEeeCCCcEEEEee
Q psy15995 664 DLLVSVGQDCNTKIWEI 680 (683)
Q Consensus 664 ~~l~s~~~d~~v~vw~~ 680 (683)
..|..+. ++ ++|..
T Consensus 193 G~l~~v~-~g--~~Y~~ 206 (236)
T 1tl2_A 193 GTLFGVQ-GG--KFYED 206 (236)
T ss_dssp SCEEEEE-TT--EEEEE
T ss_pred CcEEEEe-CC--eEEec
Confidence 5555555 66 44544
No 340
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.64 E-value=0.2 Score=47.43 Aligned_cols=229 Identities=11% Similarity=0.018 Sum_probs=109.6
Q ss_pred EEEEeeC-CCeEEEEcCCC--Ccee--eecc-ccccCeEEEEECCCCCEEEEEcC-C---------CcEEEEeCCCCeeE
Q psy15995 244 RIITGSE-DNTIAVFEGPP--FKFK--MTKQ-EHSRFVQAVRYSPSGSHFASAGF-D---------GKVFLYDGASADLV 307 (683)
Q Consensus 244 ~l~~~~~-d~~i~iw~~~~--~~~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d---------g~i~iw~~~~~~~~ 307 (683)
+++.|+. ...+.+||..+ .+.. ..+. .....-.++.+ +++.++.|+. + ..+.+||..+.+..
T Consensus 22 iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~ 99 (357)
T 2uvk_A 22 VYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWV 99 (357)
T ss_dssp EEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEE
T ss_pred EEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEE
Confidence 3455543 45688888753 3322 2222 11111222222 5666666765 2 46899999888765
Q ss_pred EeccCC-ccccCeEEEEEccCCCEEEEEECC---------------------------------------CcEEEEECCC
Q psy15995 308 SELGNP-AHKGGVYAVAWKPDGTQLLTASGD---------------------------------------KTCKLWDIET 347 (683)
Q Consensus 308 ~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d---------------------------------------g~i~iwd~~~ 347 (683)
..-..+ .....-..+. .+++.++.|+.+ ..+.+||+.+
T Consensus 100 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~ 177 (357)
T 2uvk_A 100 KLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPST 177 (357)
T ss_dssp ECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTT
T ss_pred ECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCC
Confidence 543322 1111222222 467777777754 4688999988
Q ss_pred CceeeEEEecCcceeceEEEEecCCEEEEEec------CCcEEEEecCCCCcceeeeee---ccccEEEEEEeCCCCEEE
Q psy15995 348 KSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSL------SGFISYLDVNNPSTPIRVIKG---HNKPITALALSPDRGTVF 418 (683)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~g~i~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~ 418 (683)
.+....-...............++..++.|+. ...+..||+......-..+.. ........+...+++.++
T Consensus 178 ~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv 257 (357)
T 2uvk_A 178 QQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIF 257 (357)
T ss_dssp TEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEE
T ss_pred CcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEE
Confidence 76544322222222212333346666666654 345677776221111111111 111111112223566777
Q ss_pred EEeCC----------------------CcEEEEcCCCCCcceeccCC-CCcceeEEEEeCCeEEEEEcCC------eEEE
Q psy15995 419 TGSHD----------------------GFITRWNAKTGENDRVQGAG-HGNQINGMKATGELLYTCGIDD------TIKQ 469 (683)
Q Consensus 419 ~~~~d----------------------g~i~~w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~d~------~i~~ 469 (683)
.|+.+ ..+.+||+.+.+........ ....-.++...+..++.|+.++ .+.+
T Consensus 258 ~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~ 337 (357)
T 2uvk_A 258 AGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVL 337 (357)
T ss_dssp ECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEE
T ss_pred EcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEE
Confidence 77632 25778998877654432211 1122233444577778888643 3445
Q ss_pred EeCCCCc
Q psy15995 470 VDLSSNA 476 (683)
Q Consensus 470 ~~~~~~~ 476 (683)
+++++++
T Consensus 338 l~~~~~~ 344 (357)
T 2uvk_A 338 ITVKDNK 344 (357)
T ss_dssp EEC-CCS
T ss_pred EEEcCcE
Confidence 5666654
No 341
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.044 Score=50.53 Aligned_cols=192 Identities=10% Similarity=-0.011 Sum_probs=99.4
Q ss_pred CEEEEEeCCCcEEEEcCCCCCcceeccCCCCcceeEEEE----eCCeEEEE--EcCCeEEEEeCCCCcccCCceecCCCC
Q psy15995 415 GTVFTGSHDGFITRWNAKTGENDRVQGAGHGNQINGMKA----TGELLYTC--GIDDTIKQVDLSSNAYSGPEVKLGSQP 488 (683)
Q Consensus 415 ~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~--~~d~~i~~~~~~~~~~~~~~~~~~~~~ 488 (683)
..++.++.||.|.-+|..+++..-........++..... .+..++.. ..||.+..++..++.... ..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~-~~------ 83 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL-PL------ 83 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE-EE------
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe-ee------
Confidence 467888899999999999888776654331122221110 12244444 578999888876542110 00
Q ss_pred ceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEE-----------ccCCCEEEEEcCCCcEEEEEcCCCccCc
Q psy15995 489 RGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISL-----------DHEHGLVAVGGADSKVHIYELNNKSLSP 557 (683)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 557 (683)
..+......-+.. ...+..+++|+.+|.+...|+.+++.+.
T Consensus 84 ----------------------------~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W 135 (339)
T 2be1_A 84 ----------------------------SIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIIS 135 (339)
T ss_dssp ----------------------------EHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEE
T ss_pred ----------------------------ccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEE
Confidence 0000000000110 0145688899999999999999998876
Q ss_pred ceeecCCcC------eeEEEEC-----CCCCEEEEEeCCCeEEEEECCCCccccccceeeecccEE------EEEecCCC
Q psy15995 558 KAELDHLGP------VTDCSFS-----PSNEYLVASDAHRKVVLYRVPDFELAHNKEWGFHSAKVN------CVAWSPDS 620 (683)
Q Consensus 558 ~~~~~~~~~------v~~~~~s-----~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~------~~~~s~d~ 620 (683)
....+.... ..|.... ..+..++.+..+..+.+.+ .+++ .....+........ .-..+.|+
T Consensus 136 ~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg 213 (339)
T 2be1_A 136 AFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDG 213 (339)
T ss_dssp EESTTCBCC--------------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSS
T ss_pred EEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCC
Confidence 655432111 0111110 1235677777777777766 4454 33222211100000 00112345
Q ss_pred CeEEEeecCCcEEEEeCCCCceee
Q psy15995 621 ALVASGSLDTTIIIWSLASPAKHI 644 (683)
Q Consensus 621 ~~l~~~~~d~~v~iw~~~~~~~~~ 644 (683)
.+ +.++.||.|.-+|..++..+.
T Consensus 214 ~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 214 MC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp CC-EEEETTTEEEEECSTTCCEEE
T ss_pred cE-EEECCCCEEEEEECCCCcEEE
Confidence 55 346778888888877777654
No 342
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.38 E-value=0.57 Score=42.72 Aligned_cols=212 Identities=8% Similarity=0.097 Sum_probs=117.6
Q ss_pred EEeecCCCeEEEEeeCC-------------CeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEEc----CCCcEE
Q psy15995 235 CDFKPSRPFRIITGSED-------------NTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG----FDGKVF 297 (683)
Q Consensus 235 ~~~~~~~~~~l~~~~~d-------------~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~ 297 (683)
--+++++.++..+...+ ..|+..++...+....... . ...++++++.|+-.. .+..|+
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~---~--~~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD---P--CIYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS---C--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC---C--ccEEEEeCCEEEEEeecCCCCceEE
Confidence 34577787644444433 4577777666543332221 1 236778888888665 344566
Q ss_pred EEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEEC-CCcEEEEECCCCceeeEEEecCcceeceEEEEecCCEEEE
Q psy15995 298 LYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASG-DKTCKLWDIETKSVVSEFIMGNQVEDQQVSCLWQGDYLLT 376 (683)
Q Consensus 298 iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 376 (683)
.-++..... ..+.. +. + .+++++++.|+-.+. ...|...++..+... .+. .... .....|++.+++-
T Consensus 133 ~~~~dGs~~-~~lt~--~~--~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~-~l~-~~~~---~~~~~P~g~~iy~ 200 (302)
T 3s25_A 133 RIRIDGEEK-KKIKN--HY--L--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA-LFY-DCNC---YKPVVLDDTNVYY 200 (302)
T ss_dssp EEETTSCCC-EEEES--SC--C--CCSEEETTEEEEECTTTCCEEEEETTTTEEE-EEE-CSCE---EEEEEEETTEEEE
T ss_pred EEECCCCCe-EEEeC--CC--c--eEeeEECCEEEEEeCCCceEEEEECCCCCEE-EEe-CCCc---cceeeecCCEEEE
Confidence 666654433 33321 21 2 456778888886665 567888888765533 222 2111 1234588988887
Q ss_pred EecCC--cEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEe--CCCcEEEEcCCCCCcceeccCCCCcceeEEE
Q psy15995 377 VSLSG--FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS--HDGFITRWNAKTGENDRVQGAGHGNQINGMK 452 (683)
Q Consensus 377 ~~~~g--~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~w~~~~~~~~~~~~~~~~~~v~~~~ 452 (683)
....+ .|..-++.... ...+. ...+ ..++|++.+|+-+. ..+.|..-++.......... . .+..+.
T Consensus 201 t~~~~~~~I~~~~ldG~~--~~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~-~---~~~~i~ 270 (302)
T 3s25_A 201 MDVNRDNAIVHVNINNPN--PVVLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAK-G---EFCNIN 270 (302)
T ss_dssp EEGGGTTEEEEECSSSCC--CEECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEE-S---CEEEEE
T ss_pred EEcCCCcEEEEEECCCCC--eEEEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCccEEeeC-C---ccceEE
Confidence 76553 45555555433 23332 2233 34788888888653 24567777776554433332 1 345666
Q ss_pred EeCCeEEEEE-cCCeEEEEeCC
Q psy15995 453 ATGELLYTCG-IDDTIKQVDLS 473 (683)
Q Consensus 453 ~~~~~l~~~~-~d~~i~~~~~~ 473 (683)
..+++++-.. ..+.|...++.
T Consensus 271 i~~d~Iy~td~~~~~i~~~~~d 292 (302)
T 3s25_A 271 VTSQYVYFTDFVSNKEYCTSTQ 292 (302)
T ss_dssp ECSSEEEEEETTTCCEEEEESS
T ss_pred EeCCEEEEEECCCCeEEEEECC
Confidence 6777776655 33445544443
No 343
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.33 E-value=0.89 Score=44.42 Aligned_cols=309 Identities=11% Similarity=0.038 Sum_probs=153.6
Q ss_pred EEEecCCCCEEEEeCCCcccccccccccCCCCc-ccc-----e-----eeeeecceeeeEee-----ccceEEEeecC-C
Q psy15995 100 IASGDISGKVRIWDTVNKEHILKNEFHPIGGPI-KDI-----G-----TLLSLTSIRNILVL-----SIGFYIASGDI-S 162 (683)
Q Consensus 100 las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~-----~-----~~~~~~~i~~~~~s-----~~~~~l~~~~~-d 162 (683)
+.||+..|+|+|+-+.+++.+..+..-...... ... . ............+| -||+||..-.. .
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 468899999999999999988877533211100 000 0 00111222222333 36888888764 4
Q ss_pred ccEEEEeccccceeeeccccccCCCeeEEEEc--CCCCeEEEEecCCceEEEEEEccCCCcee--------e---eecCC
Q psy15995 163 GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWS--PDNQRMVVVGEGRERFGHVFMSETGTSVG--------E---ISGQS 229 (683)
Q Consensus 163 ~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~ 229 (683)
..|...++...++-....++ ....+..++|- |+..|+++.+.... =..+.|..+. . +.+..
T Consensus 153 ~RvAri~l~~~~~d~Ii~iP-n~~~~Hg~~~~~~p~T~yv~~~~e~~~-----P~pndg~~~~~~~~~~y~~f~~iD~~t 226 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVP-NVQAIHGLRLQKVPHTKYVFANAEFII-----PHPNDGKVFDLQDENSYTMYNAIDAET 226 (638)
T ss_dssp TEEEEEETTTTEEEEEEECT-TCSCEEEEEECCSSBCCEEEEEECSCE-----ESSCSSSCCCTTSTTEEEEEEEEETTT
T ss_pred cceEEEECCcEeeceeEeCC-CCcCcccccccccCCccEEEecceeec-----cCCCCCcccccCChhhceEEEEEcCCc
Confidence 56888888876654433333 34778888886 78888888776531 1122222110 0 00000
Q ss_pred cCe-EEEEeecCCCeEEEEeeCCCeEEEEcCCCCceeeeccc--cccCeEEEEEC--------CCCCEEEEEcCCC-cEE
Q psy15995 230 KPI-NSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE--HSRFVQAVRYS--------PSGSHFASAGFDG-KVF 297 (683)
Q Consensus 230 ~~v-~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~--~~~~v~~~~~~--------~~~~~l~~~~~dg-~i~ 297 (683)
-.| +.+.. +++.-.+-.+.+|.-.++...+.+.-..+.+ ....=..+.|+ .+|++-. .+| .+.
T Consensus 227 m~v~~Qv~v--~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~---~~g~gv~ 301 (638)
T 3sbq_A 227 MEMAFQVIV--DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFIT---LGDSKTP 301 (638)
T ss_dssp CSEEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBC---CTTCCCC
T ss_pred cEEEEEEEc--CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEE---ECCCCee
Confidence 001 01111 1111112222223222222111111111100 00111111111 1222111 011 356
Q ss_pred EEeCCC----Ce-eEEeccCCccccCeEEEEEccCCCEEEEEEC-CCcEEEEECCCCce-----------eeEEEecCcc
Q psy15995 298 LYDGAS----AD-LVSELGNPAHKGGVYAVAWKPDGTQLLTASG-DKTCKLWDIETKSV-----------VSEFIMGNQV 360 (683)
Q Consensus 298 iw~~~~----~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~-----------~~~~~~~~~~ 360 (683)
+.|.+. +. ....+. .......+..+|||+++++++. +.++.++|++.... ...-...-..
T Consensus 302 ViD~~~~~~~~~~~~~~iP---~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl 378 (638)
T 3sbq_A 302 VLDGRKKDGKDSKFTRYVP---VPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL 378 (638)
T ss_dssp EEECSCBTTBCCSSEEEEE---ESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred EEccccccccCCceEEEEe---CCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence 666554 21 222222 3445678899999999988765 77899999874211 1111223345
Q ss_pred eeceEEEEecCCEEEEEecCCcEEEEecCCC---------CcceeeeeeccccEEEEE-----EeCCCCEEEEEeC
Q psy15995 361 EDQQVSCLWQGDYLLTVSLSGFISYLDVNNP---------STPIRVIKGHNKPITALA-----LSPDRGTVFTGSH 422 (683)
Q Consensus 361 ~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~---------~~~~~~~~~~~~~v~~~~-----~~~~~~~l~~~~~ 422 (683)
......+.++|....+...+..+.-|++... ...+..+.-|..+-.-.+ -.|+|++|++...
T Consensus 379 GPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 379 GPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp CEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred cccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence 5667777778866666778999999998642 123333444443322221 2568899988753
No 344
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.022 Score=52.58 Aligned_cols=192 Identities=6% Similarity=-0.045 Sum_probs=108.0
Q ss_pred EEEEeeCCCeEEEEcCCCCceeeecccc-ccCeEEEEE--CCCCCEEEEE--cCCCcEEEEeCCCCeeEEeccCCc--cc
Q psy15995 244 RIITGSEDNTIAVFEGPPFKFKMTKQEH-SRFVQAVRY--SPSGSHFASA--GFDGKVFLYDGASADLVSELGNPA--HK 316 (683)
Q Consensus 244 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~~~v~~~~~--~~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~--~~ 316 (683)
+++.++.||.|.-+|..+|+.+..+... ..++....- .+.+..++.+ +.||.+..++..+|.....+..+. ..
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 5899999999999999999988887654 122222110 0112234444 579999999998886655443211 11
Q ss_pred cCeEE---EEE-----ccCCCEEEEEECCCcEEEEECCCCceeeEEEecCccee----ce--EEEE-----ecCCEEEEE
Q psy15995 317 GGVYA---VAW-----KPDGTQLLTASGDKTCKLWDIETKSVVSEFIMGNQVED----QQ--VSCL-----WQGDYLLTV 377 (683)
Q Consensus 317 ~~i~~---~~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~--~~~~-----~~~~~l~~~ 377 (683)
.++.. ... ...+..+++++.+|.+...|+.+|+.+.++........ .. .... ..+..++.+
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig 171 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIG 171 (339)
T ss_dssp CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEEE
T ss_pred cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEe
Confidence 12221 000 01456789999999999999999999988865432110 00 0000 124567777
Q ss_pred ecCCcEEEEecCCCCccee-eeeecccc-EE-----EEEEeCCCCEEEEEeCCCcEEEEcCCCCCcce
Q psy15995 378 SLSGFISYLDVNNPSTPIR-VIKGHNKP-IT-----ALALSPDRGTVFTGSHDGFITRWNAKTGENDR 438 (683)
Q Consensus 378 ~~~g~i~~~~~~~~~~~~~-~~~~~~~~-v~-----~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~ 438 (683)
..+..+.+.+ +++ ..-. .+...... +. .-..+.|+.+ +.++.||.|.-+|..++...-
T Consensus 172 ~~~y~v~~~~-~sG-~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 172 KTIFELGIHS-YDG-ASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEECEECC-TTS-CCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred cceEEEEEEC-CCC-CeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 7776666666 222 1110 00000000 00 0000123555 457889999999988877654
No 345
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.05 E-value=1.2 Score=43.41 Aligned_cols=108 Identities=9% Similarity=0.062 Sum_probs=61.6
Q ss_pred cceeeeEeeccceEEEeecCCccEEEEeccccceeeecccc------ccCCCeeEEEEcCC---CCeEEEEecC------
Q psy15995 142 TSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEFH------PIGGPIKDIAWSPD---NQRMVVVGEG------ 206 (683)
Q Consensus 142 ~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------~~~~~i~~~~~s~~---~~~l~~~~~~------ 206 (683)
.....++|.|+|+++++-...+.|++++..+++......+. ...+....|+|+|| +..|.++...
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 45678999999998777655557888876555432211111 12456779999996 6666665532
Q ss_pred -C----ceEEEEEEccCC-------Ccee-eee-cCCcCeEEEEeecCCCeEEEEee
Q psy15995 207 -R----ERFGHVFMSETG-------TSVG-EIS-GQSKPINSCDFKPSRPFRIITGS 249 (683)
Q Consensus 207 -~----~~~~~~~~~~~~-------~~~~-~~~-~~~~~v~~~~~~~~~~~~l~~~~ 249 (683)
. ...+.-+..+.+ +.+. .+. ........++|.|++...+.+|.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 0 111222222221 1111 122 12235789999999986454443
No 346
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.02 E-value=0.87 Score=41.48 Aligned_cols=248 Identities=8% Similarity=-0.022 Sum_probs=127.1
Q ss_pred EeeccceEEEeec--CCccEEEEeccccceeeeccccccCCCeeEEEEcCCCCeEEEEecCC------------ceEEEE
Q psy15995 148 LVLSIGFYIASGD--ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR------------ERFGHV 213 (683)
Q Consensus 148 ~~s~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~------------~~~~~~ 213 (683)
.|+++|.+|.... .++.|...+...... .+..- . .+--+++++.+++.+.... ...++.
T Consensus 20 ~~~~~g~~iy~~n~~d~~~ly~~~~dg~~~-~~l~~----~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~ 92 (302)
T 3s25_A 20 LFCESDGEVFFSNTNDNGRLYAMNIDGSNI-HKLSN----D--TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCR 92 (302)
T ss_dssp CEEEETTEEEEEEGGGTTEEEEEETTSCSC-EEEEE----E--EEEEEEECSSEEEEEEECC------CCSSCCSEEEEE
T ss_pred EEEEeCCEEEEEeCCCCceEEEEcCCCCCC-EEccC----C--ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEE
Confidence 3556777666553 345566666544332 11111 1 2345688999999987653 222333
Q ss_pred EEccCCCceeeeecCCcCeEEEEeecCCCeEEEEe---eCCCeEEEEcCCCCceeeeccccccCeEEEEECCCCCEEEEE
Q psy15995 214 FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITG---SEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASA 290 (683)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 290 (683)
...+.++ ...+.... ...|+++++.+..+- ..+..|...++.... ...+..+.. .+++++++.|+-.
T Consensus 93 i~~dg~~-~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t 162 (302)
T 3s25_A 93 IKRNGHG-STVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYN 162 (302)
T ss_dssp EETTSCC-CEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEE
T ss_pred EeCCCCc-ceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEE
Confidence 3333333 22222221 236788888644443 234455556655433 333333322 4568888888766
Q ss_pred cC-CCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCC--cEEEEECCCCceeeEEEecCcceeceEEE
Q psy15995 291 GF-DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK--TCKLWDIETKSVVSEFIMGNQVEDQQVSC 367 (683)
Q Consensus 291 ~~-dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (683)
+. ...|..-++..+.....+. +... ..+.|++++|+-....+ .|..-++..... ..+ .... ...+
T Consensus 163 ~~g~~~Iy~~~l~g~~~~~l~~-----~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~L-t~~~----~~~~ 230 (302)
T 3s25_A 163 NPKNGQLYRYDTASQSEALFYD-----CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVL-TEAN----IEHY 230 (302)
T ss_dssp CTTTCCEEEEETTTTEEEEEEC-----SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EEC-SCSC----EEEE
T ss_pred eCCCceEEEEECCCCCEEEEeC-----CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEE-eCCC----cceE
Confidence 54 5788888887765543332 1222 23568888888766543 455555554432 222 1111 1347
Q ss_pred EecCCEEEEEec--CCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEe-CCCcEEEEc
Q psy15995 368 LWQGDYLLTVSL--SGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS-HDGFITRWN 430 (683)
Q Consensus 368 ~~~~~~l~~~~~--~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~w~ 430 (683)
.+.++.|+.... .+.|...++.... .+.+... .+. .+++.+.+++-.. ..+.|..-+
T Consensus 231 ~~~g~~Iy~~~~~~~~~i~~~~~DG~~--r~~l~~~--~~~--~i~i~~d~Iy~td~~~~~i~~~~ 290 (302)
T 3s25_A 231 NVYGSLIFYQRGGDNPALCVVKNDGTG--FKELAKG--EFC--NINVTSQYVYFTDFVSNKEYCTS 290 (302)
T ss_dssp EEETTEEEEEECSSSCEEEEEETTSCC--CEEEEES--CEE--EEEECSSEEEEEETTTCCEEEEE
T ss_pred EECCCEEEEEECCCCcEEEEEECCCCc--cEEeeCC--ccc--eEEEeCCEEEEEECCCCeEEEEE
Confidence 778888876643 3455555555422 2222211 233 3444556666443 234444333
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.33 E-value=0.66 Score=48.38 Aligned_cols=118 Identities=10% Similarity=0.160 Sum_probs=66.7
Q ss_pred EEEEccCCCEEEEEcCCC--cEEEEEcCCCccCccee---ec-CCcCeeEEEECCC-CCEEEEEeC--C-----CeEEEE
Q psy15995 526 SISLDHEHGLVAVGGADS--KVHIYELNNKSLSPKAE---LD-HLGPVTDCSFSPS-NEYLVASDA--H-----RKVVLY 591 (683)
Q Consensus 526 ~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~---~~-~~~~v~~~~~s~~-~~~l~~~~~--d-----~~i~i~ 591 (683)
+.+.-.++++++.|+.++ .+.+||..+........ .. ....-.++.+..+ ++.++.|+. + ..+.+|
T Consensus 494 ~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~y 573 (695)
T 2zwa_A 494 SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIF 573 (695)
T ss_dssp EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEE
T ss_pred eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEE
Confidence 344435788888887654 69999998876543221 11 1122234555554 667777765 2 468899
Q ss_pred ECCCCcc------ccccceeeecccEEEEEecCCCCeEEEeecC--------CcEEEEeCCCCcee
Q psy15995 592 RVPDFEL------AHNKEWGFHSAKVNCVAWSPDSALVASGSLD--------TTIIIWSLASPAKH 643 (683)
Q Consensus 592 ~~~~~~~------~~~~~~~~h~~~v~~~~~s~d~~~l~~~~~d--------~~v~iw~~~~~~~~ 643 (683)
|+.+.+. ............-.+++...++++++.|+.+ ..+.+||+.+.+-.
T Consensus 574 d~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 574 KYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 9988762 1110000000011122233347788888753 45999999887654
No 348
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=95.08 E-value=2.7 Score=40.92 Aligned_cols=52 Identities=15% Similarity=0.075 Sum_probs=36.1
Q ss_pred CCeEEEeeCCCCC--eEEEecCCeEEEEeCCCCc---cccc----cc-C----cccceEEEEECCC
Q psy15995 45 GQPIVLGGDPKGK--NFLYTNGNSVIIRNIENPA---ISDI----YT-E----HSCAVNVAKYSPS 96 (683)
Q Consensus 45 ~~~~~~~~s~~~~--~l~~~~~~~i~v~~~~~~~---~~~~----~~-~----h~~~v~~~~~s~d 96 (683)
..+..|+|.|||. ++++...|.|++++..... .+.. +. + .......|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 4678999999995 8888888999999754321 1111 11 1 2456889999996
No 349
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.91 E-value=1.7 Score=45.22 Aligned_cols=155 Identities=14% Similarity=0.206 Sum_probs=84.3
Q ss_pred EEEEcc-CCCEEEEEcCC------CcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEeCCC--eEEEEECCCC
Q psy15995 526 SISLDH-EHGLVAVGGAD------SKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHR--KVVLYRVPDF 596 (683)
Q Consensus 526 ~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~i~~~~~~ 596 (683)
+++..+ ++++++.|+.+ ..+.+||..+..............-.+++.-.+++.++.|+.++ .+.+||..+.
T Consensus 444 s~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~ 523 (695)
T 2zwa_A 444 TFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEE 523 (695)
T ss_dssp EEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTT
T ss_pred EEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCC
Confidence 334443 77788888754 35889998886544332222111112333334788888887654 6999999886
Q ss_pred ccccccc---eeeecccEEEEEecCC-CCeEEEeec--C-----CcEEEEeCCCCce------eeEeec-CCCCCCeeEE
Q psy15995 597 ELAHNKE---WGFHSAKVNCVAWSPD-SALVASGSL--D-----TTIIIWSLASPAK------HIIIKN-AHPQSQITRL 658 (683)
Q Consensus 597 ~~~~~~~---~~~h~~~v~~~~~s~d-~~~l~~~~~--d-----~~v~iw~~~~~~~------~~~~~~-~~~~~~v~~l 658 (683)
+...... .......-.++.+..+ +++++.|+. + ..+.+||+.+... ...... ......- ++
T Consensus 524 ~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~ 602 (695)
T 2zwa_A 524 IFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QI 602 (695)
T ss_dssp EEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EE
T ss_pred ceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eE
Confidence 6543221 0001111233455554 677788776 2 3588999988772 211110 0111122 33
Q ss_pred EEcc-CCeEEEeeCC--------CcEEEEeec
Q psy15995 659 QWLD-NDLLVSVGQD--------CNTKIWEIA 681 (683)
Q Consensus 659 ~~~~-~~~l~s~~~d--------~~v~vw~~~ 681 (683)
+..+ +.+++.||.+ ..+.+||++
T Consensus 603 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 603 KYITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp EEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred EEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 3344 7788888753 347777764
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.39 E-value=2.7 Score=37.75 Aligned_cols=220 Identities=10% Similarity=-0.024 Sum_probs=121.4
Q ss_pred CCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCce---eeeecC
Q psy15995 444 HGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAK---VSSLPI 520 (683)
Q Consensus 444 ~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 520 (683)
....|..++......+... |+.+..|-...................+.....+........+..+..... -.....
T Consensus 22 ~~~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~~G~v~~wG~n~~Gqlg~P~~~ 100 (282)
T 3qhy_B 22 AQSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALKDGEVIAWGGNEDGQTTVPAEA 100 (282)
T ss_dssp GSSSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEETTEEEEEECCTTSTTCCCGGG
T ss_pred ccCCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEECCEEEEeeCCCCCCCCCCccc
Confidence 3346778877766655556 999999987765544433333334555555555554445555655543211 111122
Q ss_pred CCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEeCCCeEEEEECCCCcccc
Q psy15995 521 DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAH 600 (683)
Q Consensus 521 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~ 600 (683)
...+..++...+. .+.-. ||.|+.|-......... .......|..++...+. .++-. ||.+..|-......+.
T Consensus 101 ~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg~-~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gqlg 173 (282)
T 3qhy_B 101 RSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTTV-PAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQTT 173 (282)
T ss_dssp SSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTSC-CGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTTS
T ss_pred CCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCCC-CccCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCCC
Confidence 3345555555443 33334 89999997655332211 11234567777765443 23333 7999999876532221
Q ss_pred ccceeeecccEEEEEecCCCCeEEEeecCCcEEEEeCCCCceeeEeecCCCCCCeeEEEEccCCeEEEeeCCCcEEEEee
Q psy15995 601 NKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKHIIIKNAHPQSQITRLQWLDNDLLVSVGQDCNTKIWEI 680 (683)
Q Consensus 601 ~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~v~vw~~ 680 (683)
.... -...|..++...+- .++. .||.|+.|-......+..... ....|..++--....++.. ||.|..|=-
T Consensus 174 ~p~~--~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~~--~~~~v~~i~~G~~h~~al~--~g~v~~wG~ 244 (282)
T 3qhy_B 174 VPAE--AQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPTE--ALSGVSAIASGEWYSLALK--NGKVIAWGS 244 (282)
T ss_dssp CCGG--GGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCGG--GGSSCCEEEECSSCEEEEE--TTEEEEEST
T ss_pred Ccee--cCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCCcc--cCCCceEEEcCCCEEEEEE--CCEEEEecC
Confidence 1111 23567777765432 2333 699999998765443322211 1346777775555555444 899988843
No 351
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=90.42 E-value=18 Score=37.49 Aligned_cols=251 Identities=10% Similarity=0.022 Sum_probs=120.0
Q ss_pred cceEEEE-ECCCCcEEEE-ecCC----CCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceEEEee
Q psy15995 86 CAVNVAK-YSPSGFYIAS-GDIS----GKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFYIASG 159 (683)
Q Consensus 86 ~~v~~~~-~s~d~~~las-~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 159 (683)
-....+. ++||+++++. -|.. ..++++|+.+++.+..--. +... .+.+ .......++|..+...+++.
T Consensus 129 ~~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k----~~~~-~~~~~~~~~W~d~~~~~~~~ 202 (711)
T 4hvt_A 129 VAYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITN----SGKL-LEGKFTYPTWINKDTIIFNL 202 (711)
T ss_dssp EEEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCT----TCCB-CCEETCCEEEEETTEEEECC
T ss_pred EEEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccc----cccc-cccccceeeEECCCEEEEEe
Confidence 3556666 8999988764 2333 3599999999977632101 1000 0000 00012233565444444431
Q ss_pred ----------cCCccEEEEeccccceeeeccccccCCC-eeEEEEcCCCCe----EEEEec-CCc-eEEEEEEccCC-Cc
Q psy15995 160 ----------DISGKVRIWDTVNKEHILKNEFHPIGGP-IKDIAWSPDNQR----MVVVGE-GRE-RFGHVFMSETG-TS 221 (683)
Q Consensus 160 ----------~~d~~i~iwd~~~~~~~~~~~~~~~~~~-i~~~~~s~~~~~----l~~~~~-~~~-~~~~~~~~~~~-~~ 221 (683)
+....|+.|.+-+...--...+...... -.+...++++++ +++... +.. ....+.+.+.. ..
T Consensus 203 ~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 282 (711)
T 4hvt_A 203 VLHKNEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK 282 (711)
T ss_dssp CCSTTCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE
T ss_pred CCCCCCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc
Confidence 1235688888765432222222222222 334556777764 333222 221 22233333221 12
Q ss_pred eeeeecCCcCeEEEEeecCCCeEEEEe---------eCCCeEEEEcCCCCc--------eeeec-cccccCeEEEEECCC
Q psy15995 222 VGEISGQSKPINSCDFKPSRPFRIITG---------SEDNTIAVFEGPPFK--------FKMTK-QEHSRFVQAVRYSPS 283 (683)
Q Consensus 222 ~~~~~~~~~~v~~~~~~~~~~~~l~~~---------~~d~~i~iw~~~~~~--------~~~~~-~~~~~~v~~~~~~~~ 283 (683)
...+..... ..+..+.++..++.+. ...+.|...++.... ....+ ......+..+.+..+
T Consensus 283 ~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 360 (711)
T 4hvt_A 283 LQKINMPSD--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD 360 (711)
T ss_dssp EEECCSCTT--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS
T ss_pred ceEeecCCc--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC
Confidence 222222211 1123344554322221 246778888876531 11112 223446778888876
Q ss_pred CCEEEEEcCCC--cEEEEeCCCCe-eEEe-ccCCccccCeEEEEEccCCCEE-EEEEC---CCcEEEEECC
Q psy15995 284 GSHFASAGFDG--KVFLYDGASAD-LVSE-LGNPAHKGGVYAVAWKPDGTQL-LTASG---DKTCKLWDIE 346 (683)
Q Consensus 284 ~~~l~~~~~dg--~i~iw~~~~~~-~~~~-~~~~~~~~~i~~~~~~~~~~~l-~~~~~---dg~i~iwd~~ 346 (683)
..+++...++ .+.++++.+++ .... +..+ ..+.+......+++..+ ++.+. -+.+..+|+.
T Consensus 361 -~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 361 -RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLP-YQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp -CEEEEEEETTEEEEEEECEETTEECCCEEECCC-STTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred -EEEEEEEECCEEEEEEEECCCCceEEEeccCCC-CCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 4666776676 46777776664 2233 3332 13456666666766544 44333 3557777776
No 352
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=89.50 E-value=20 Score=36.72 Aligned_cols=37 Identities=14% Similarity=0.290 Sum_probs=30.8
Q ss_pred ceEEEEECCCCcEEEEecCCCCEEEEeCCCccccccccc
Q psy15995 87 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 125 (683)
Q Consensus 87 ~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~ 125 (683)
.|.++.+ +.++|++-+.|.++|+|++.+++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4666654 467999999999999999999998877766
No 353
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=88.44 E-value=17 Score=34.47 Aligned_cols=186 Identities=13% Similarity=0.065 Sum_probs=88.1
Q ss_pred EEEeecCCccEEEEeccc-cceeeeccccccCCCeeEEEEcC-CCCeEEEEecCCceEEEEEEc-cCCCceeeeec----
Q psy15995 155 YIASGDISGKVRIWDTVN-KEHILKNEFHPIGGPIKDIAWSP-DNQRMVVVGEGRERFGHVFMS-ETGTSVGEISG---- 227 (683)
Q Consensus 155 ~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~---- 227 (683)
.|.++...| +.+++... ++.-...........|.+|++.| +...+.++......-..++.. +.++.-..+..
T Consensus 24 ~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~ 102 (394)
T 3b7f_A 24 MLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAF 102 (394)
T ss_dssp EEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCC
T ss_pred EEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccC
Confidence 555666666 44554432 22111111112236799999998 334444444331000123333 33433222211
Q ss_pred ----------CCcCeEEEEeecCC-CeEEEEeeCCCeEEEEcCC--CCceeeecc----------------ccccCeEEE
Q psy15995 228 ----------QSKPINSCDFKPSR-PFRIITGSEDNTIAVFEGP--PFKFKMTKQ----------------EHSRFVQAV 278 (683)
Q Consensus 228 ----------~~~~v~~~~~~~~~-~~~l~~~~~d~~i~iw~~~--~~~~~~~~~----------------~~~~~v~~~ 278 (683)
....|.++++.|.+ +..+..+...+.|...+-. +.+.+.... .....+.++
T Consensus 103 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i 182 (394)
T 3b7f_A 103 NKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSI 182 (394)
T ss_dssp CCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEE
T ss_pred CCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEE
Confidence 11257788898732 2246666666766665422 222221111 112357899
Q ss_pred EECCC-CCEEEEEcCCCcEEEEeCCCCeeEEeccC--Cc-c--------ccCeEEEEEccC-CCEEEEEECCCcEEEE
Q psy15995 279 RYSPS-GSHFASAGFDGKVFLYDGASADLVSELGN--PA-H--------KGGVYAVAWKPD-GTQLLTASGDKTCKLW 343 (683)
Q Consensus 279 ~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~-~--------~~~i~~~~~~~~-~~~l~~~~~dg~i~iw 343 (683)
.+.|. ...+..+..++.|...+ ..++.-..+.. .. + ...+.++++.|+ ...++++...+ |...
T Consensus 183 ~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s 258 (394)
T 3b7f_A 183 LVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRM 258 (394)
T ss_dssp EECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEE
T ss_pred EECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEe
Confidence 99984 34455555455555443 22322222211 00 0 135889999985 45677776554 4433
No 354
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=87.56 E-value=4.7 Score=43.68 Aligned_cols=41 Identities=7% Similarity=0.052 Sum_probs=35.2
Q ss_pred cceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccc
Q psy15995 86 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH 126 (683)
Q Consensus 86 ~~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~ 126 (683)
..|.+++..++..++++-+.|+++|+|++.+++++......
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 35778888889999999999999999999999988776543
No 355
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=87.41 E-value=17 Score=33.27 Aligned_cols=141 Identities=5% Similarity=-0.006 Sum_probs=72.4
Q ss_pred CCCEEEEEcCCCcEEEEEcC--CCccCcc-------eeecCCcCeeEEEECCCCCEEEEEeCCCeEEEEECCCCcccc--
Q psy15995 532 EHGLVAVGGADSKVHIYELN--NKSLSPK-------AELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAH-- 600 (683)
Q Consensus 532 ~~~~l~~~~~dg~i~i~d~~--~~~~~~~-------~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~-- 600 (683)
....|+..+..|.+..+... .-....+ ..+.....|.++...+++.+|+..+..|.++.-.+.......
T Consensus 156 ~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~ 235 (327)
T 3uc1_A 156 AGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRG 235 (327)
T ss_dssp TTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred CCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcC
Confidence 34456666777887777766 2211111 122345667777776777789999999999988876433221
Q ss_pred -----ccceeeecccEEEEEecCCCCeEEEeecCCcEEEEeCCCCcee-------eEeecCCCCCCeeEEEEc--cCCeE
Q psy15995 601 -----NKEWGFHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASPAKH-------IIIKNAHPQSQITRLQWL--DNDLL 666 (683)
Q Consensus 601 -----~~~~~~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~~~~-------~~~~~~~~~~~v~~l~~~--~~~~l 666 (683)
...+..-.+.+..+....+...++..+.+|.+.-++...-... ..+... ..+.|.++... ++..+
T Consensus 236 ~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~-~~d~vv~~~~~~~~~~~~ 314 (327)
T 3uc1_A 236 GKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLG-EGDTLLAIARNAEESGDD 314 (327)
T ss_dssp SCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCC-TTCCEEEEEECC------
T ss_pred CCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecC-CCCEEEEEEEcCCCcceE
Confidence 1111101234444444444556667777887777765432211 111111 24677777766 34456
Q ss_pred EEeeCCC
Q psy15995 667 VSVGQDC 673 (683)
Q Consensus 667 ~s~~~d~ 673 (683)
++.+.+|
T Consensus 315 ~~~~~~g 321 (327)
T 3uc1_A 315 NAVDANG 321 (327)
T ss_dssp -------
T ss_pred EEEecCC
Confidence 6666555
No 356
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=86.96 E-value=18 Score=33.10 Aligned_cols=103 Identities=12% Similarity=0.032 Sum_probs=56.5
Q ss_pred EEEEeeCCCeEEEEcCCCCc---------eeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEe---CCC------Ce
Q psy15995 244 RIITGSEDNTIAVFEGPPFK---------FKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYD---GAS------AD 305 (683)
Q Consensus 244 ~l~~~~~d~~i~iw~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~---~~~------~~ 305 (683)
.+++.+.+|.|+--.+.+.+ .-..++ ..+.+..+........|+.-+..|.++-.. +.. |.
T Consensus 5 v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~ 83 (327)
T 3uc1_A 5 VVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ 83 (327)
T ss_dssp EEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred EEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence 57888888988876532211 111122 234555555555555666666678766553 322 22
Q ss_pred eEEeccCCccccCeEEEEEcc---CCCEEEEEECCCcEEEEECCC
Q psy15995 306 LVSELGNPAHKGGVYAVAWKP---DGTQLLTASGDKTCKLWDIET 347 (683)
Q Consensus 306 ~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~iwd~~~ 347 (683)
.+..+-.......|.++...+ +...++..+.+|.++.-.+..
T Consensus 84 ~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~ 128 (327)
T 3uc1_A 84 HVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTD 128 (327)
T ss_dssp EHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGG
T ss_pred EHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHH
Confidence 222221112345566554433 467788888888888777654
No 357
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=86.14 E-value=26 Score=34.07 Aligned_cols=55 Identities=15% Similarity=0.075 Sum_probs=35.5
Q ss_pred cceeeeEeeccce-EEEeecCCccEEEEeccccc---eeeecc--cc-----ccCCCeeEEEEcCC
Q psy15995 142 TSIRNILVLSIGF-YIASGDISGKVRIWDTVNKE---HILKNE--FH-----PIGGPIKDIAWSPD 196 (683)
Q Consensus 142 ~~i~~~~~s~~~~-~l~~~~~d~~i~iwd~~~~~---~~~~~~--~~-----~~~~~i~~~~~s~~ 196 (683)
.....|+|.|||. .|+++...|.|++++..... .+.... +. ..++....|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 5677899999996 55556678999999754321 111111 11 11456889999997
No 358
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=85.79 E-value=36 Score=35.35 Aligned_cols=233 Identities=9% Similarity=-0.001 Sum_probs=110.8
Q ss_pred eCCCCCeEEEe--cCC----eEEEEeCCCCccccc-ccC-ccc------ceEEEEECCCCcEEEEec----------CCC
Q psy15995 52 GDPKGKNFLYT--NGN----SVIIRNIENPAISDI-YTE-HSC------AVNVAKYSPSGFYIASGD----------ISG 107 (683)
Q Consensus 52 ~s~~~~~l~~~--~~~----~i~v~~~~~~~~~~~-~~~-h~~------~v~~~~~s~d~~~las~~----------~dg 107 (683)
++||+++++++ .+| .++++|+++++.+.- |.. -+. ....++|..+..++++.. ...
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~ 216 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYPN 216 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSBC
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCCC
Confidence 89999999987 232 799999999987642 220 000 113346654444444321 123
Q ss_pred CEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeeccceE-----EEeec---CCccEEEEeccc--cceee
Q psy15995 108 KVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSIGFY-----IASGD---ISGKVRIWDTVN--KEHIL 177 (683)
Q Consensus 108 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-----l~~~~---~d~~i~iwd~~~--~~~~~ 177 (683)
+|+.|.+.+...--..-+..... ........++++++ +++.+ ....+.+.+... ++ +.
T Consensus 217 ~v~~~~~Gt~~~~~~~v~~~~~~-----------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~ 284 (711)
T 4hvt_A 217 SLYIWKRGESIEKAKKLFEVPKE-----------YIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQ 284 (711)
T ss_dssp EEEEEETTSCGGGCEEEEECCTT-----------SCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EE
T ss_pred EEEEEECCCChHHCeEEeccCCC-----------ceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ce
Confidence 48888776553221111111000 01122334455552 33322 224456666553 22 11
Q ss_pred eccccccCCCeeEEEEcCCCCeEEEEecC--------CceEEEEEEccCC-------Cceeeee--cCCcCeEEEEeecC
Q psy15995 178 KNEFHPIGGPIKDIAWSPDNQRMVVVGEG--------RERFGHVFMSETG-------TSVGEIS--GQSKPINSCDFKPS 240 (683)
Q Consensus 178 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~--------~~~~~~~~~~~~~-------~~~~~~~--~~~~~v~~~~~~~~ 240 (683)
....+. . ..+..+.++.+++....+ ....+...+.+.+ .....+- .....+..+.+..+
T Consensus 285 ~l~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 360 (711)
T 4hvt_A 285 KINMPS-D---ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD 360 (711)
T ss_dssp ECCSCT-T---CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS
T ss_pred EeecCC-c---ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC
Confidence 222221 1 122344455544433221 1122445555543 1222222 23345667777766
Q ss_pred CCeEEEEeeCCCe--EEEEcCCCCc-eeee-ccc-cccCeEEEEECCCCC-EEEEEcC---CCcEEEEeCC
Q psy15995 241 RPFRIITGSEDNT--IAVFEGPPFK-FKMT-KQE-HSRFVQAVRYSPSGS-HFASAGF---DGKVFLYDGA 302 (683)
Q Consensus 241 ~~~~l~~~~~d~~--i~iw~~~~~~-~~~~-~~~-~~~~v~~~~~~~~~~-~l~~~~~---dg~i~iw~~~ 302 (683)
. ++++...++. +.+++..+++ .... +.- ....+......+++. ++++.+. -+.+..+|..
T Consensus 361 ~--l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 361 R--VFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp C--EEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred E--EEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 3 5777777765 5667765554 1222 211 124566666677765 3333332 3567888876
No 359
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=85.34 E-value=20 Score=31.93 Aligned_cols=197 Identities=13% Similarity=0.066 Sum_probs=109.2
Q ss_pred CeEEEEeecCCCeEEEEeeCCCeEEEE---cCCCCceeeeccccccCeEEEEECC--CCCEEEEEcCCCcEEEEeCCCCe
Q psy15995 231 PINSCDFKPSRPFRIITGSEDNTIAVF---EGPPFKFKMTKQEHSRFVQAVRYSP--SGSHFASAGFDGKVFLYDGASAD 305 (683)
Q Consensus 231 ~v~~~~~~~~~~~~l~~~~~d~~i~iw---~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~ 305 (683)
.+..+.......+ ++..+.+|.++-- +++.......+. ....|..+.. + +...++..+.+|.++...+..-.
T Consensus 25 ~~~~~~~~~t~~~-ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 25 PVVNILRVPFTEG-LFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CEEEEEEEETTSC-EEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred eEEEEEEECCCCE-EEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 3444433333333 5566666766543 333222111132 3456666654 4 46789999999999998765432
Q ss_pred ----eEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCce-------eeEEEecCcceeceEEEEecCCEE
Q psy15995 306 ----LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSV-------VSEFIMGNQVEDQQVSCLWQGDYL 374 (683)
Q Consensus 306 ----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l 374 (683)
-...+... ....+..+........++..+..|.+..++...-.. +.-+..........+....++..+
T Consensus 102 ~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~l 180 (276)
T 3no0_A 102 YKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYL 180 (276)
T ss_dssp TCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEE
T ss_pred hhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEE
Confidence 11122221 345666666666667888889999988887543211 111222223333334444567789
Q ss_pred EEEecCCcEEEEecCCCC------cceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEE--EcCC
Q psy15995 375 LTVSLSGFISYLDVNNPS------TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITR--WNAK 432 (683)
Q Consensus 375 ~~~~~~g~i~~~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~--w~~~ 432 (683)
+..+..|..+...+..-. .-+..+ ...+.+..+....+...++..+.+|.+.. ++..
T Consensus 181 l~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 181 LVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 999999999888765311 112222 23445555544444456666677777776 6654
No 360
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=85.09 E-value=22 Score=32.32 Aligned_cols=68 Identities=10% Similarity=0.085 Sum_probs=44.1
Q ss_pred EccCCCEEEEEcCCCcEEEEEcCCCccCcc-------eeecCCcCeeEEEECCCCCEEEEEeCCCeEEEEECCCC
Q psy15995 529 LDHEHGLVAVGGADSKVHIYELNNKSLSPK-------AELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 596 (683)
Q Consensus 529 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~ 596 (683)
...+...++..+.+|.+..+....-....+ ..+.....|..+..-.++..+++.+..|..+..++...
T Consensus 158 ~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 158 IVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp EECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred EeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 333445677778889888888765222211 11223456667666556677888899999999988643
No 361
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=84.97 E-value=27 Score=33.12 Aligned_cols=247 Identities=13% Similarity=0.069 Sum_probs=125.7
Q ss_pred EEEecCCEEEEEecCCcEEEEecCCCCc-------ceee---ee-eccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC
Q psy15995 366 SCLWQGDYLLTVSLSGFISYLDVNNPST-------PIRV---IK-GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTG 434 (683)
Q Consensus 366 ~~~~~~~~l~~~~~~g~i~~~~~~~~~~-------~~~~---~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~ 434 (683)
.+.......++...+|.+..|-.....+ .... +. .....+..++++....+.+.-..||.|..|-....
T Consensus 57 ~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~ 136 (389)
T 3kci_A 57 QLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAED 136 (389)
T ss_dssp EEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGG
T ss_pred EEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCC
Confidence 3444667777888899999996543211 0000 11 11223555666666677777788999999954321
Q ss_pred Cc-----------ceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEe
Q psy15995 435 EN-----------DRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTV 503 (683)
Q Consensus 435 ~~-----------~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (683)
.. ...........|..++......+....+|.|..|-............ .... .
T Consensus 137 GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~----~~~~-------~---- 201 (389)
T 3kci_A 137 GKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDS----EDQL-------K---- 201 (389)
T ss_dssp GTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSC----CCEE-------E----
T ss_pred CcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCC----cccc-------c----
Confidence 10 01111112235777777778888888999999998654322111000 0000 0
Q ss_pred ceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEEEcCCCcEEEEEcCCCccC----------cceee-cCCcCeeEEEE
Q psy15995 504 KQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLS----------PKAEL-DHLGPVTDCSF 572 (683)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~-~~~~~v~~~~~ 572 (683)
...+ .......+..++........++-..||.|+.|-......+ +.... -....|..++.
T Consensus 202 --------p~~v-~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~ 272 (389)
T 3kci_A 202 --------PKLV-EALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVEC 272 (389)
T ss_dssp --------EEEC-GGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEE
T ss_pred --------ceEe-cccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeC
Confidence 0000 0011223444554443345555567888888865421110 00000 01223555554
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCccccc------c---cee-eecccEEEEEecCCCCeEEEeecCCcEEEEeCCCC
Q psy15995 573 SPSNEYLVASDAHRKVVLYRVPDFELAHN------K---EWG-FHSAKVNCVAWSPDSALVASGSLDTTIIIWSLASP 640 (683)
Q Consensus 573 s~~~~~l~~~~~d~~i~i~~~~~~~~~~~------~---~~~-~h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~ 640 (683)
. ..+.++-..+|.|+.|-....-.+-. . ... .....|..++.. ....+....||.|+.|-....
T Consensus 273 G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~wG~n~~ 346 (389)
T 3kci_A 273 G--SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTWGDNDE 346 (389)
T ss_dssp E--TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEEECCTT
T ss_pred C--CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEeeCCCC
Confidence 3 33455557889999997653111100 0 000 011235555543 334555678999999987643
No 362
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=84.52 E-value=23 Score=32.09 Aligned_cols=244 Identities=14% Similarity=0.091 Sum_probs=125.4
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCcceec-------cCCCCcceeEEE-Ee-CCeEEEEEcCCeEEEEeCCCCcccCCce
Q psy15995 412 PDRGTVFTGSHDGFITRWNAKTGENDRVQ-------GAGHGNQINGMK-AT-GELLYTCGIDDTIKQVDLSSNAYSGPEV 482 (683)
Q Consensus 412 ~~~~~l~~~~~dg~i~~w~~~~~~~~~~~-------~~~~~~~v~~~~-~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~ 482 (683)
|+...+++.+.+|.|+--.+..-+..... .......+..+. .+ .+.++..+..|.+..+....-.....
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~-- 78 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATR-- 78 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCS--
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCC--
Confidence 34567788889999887766543221110 011223333322 22 77888888888877665443211110
Q ss_pred ecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEE-c--cCCCEEEEEcCCCcEEEEEcCCCccCcc-
Q psy15995 483 KLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISL-D--HEHGLVAVGGADSKVHIYELNNKSLSPK- 558 (683)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~- 558 (683)
...+.... ....+.....+..+.. . .++.+++..+.+|.++.-.+..-.....
T Consensus 79 ----~a~G~~i~-------------------~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~ 135 (307)
T 1zi0_A 79 ----GARGRPIV-------------------NLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTA 135 (307)
T ss_dssp ----SSCCEEGG-------------------GTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTT
T ss_pred ----CCCCeEhh-------------------hccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccC
Confidence 00000000 0001111222333322 1 3456788889999999988753222111
Q ss_pred ----eeecCCcCeeEEEECCCCCEEEEEeCCCeEEEEECCCCcccc-------ccceeeecccEEEEEecCCCCeEEEee
Q psy15995 559 ----AELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAH-------NKEWGFHSAKVNCVAWSPDSALVASGS 627 (683)
Q Consensus 559 ----~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~-------~~~~~~h~~~v~~~~~s~d~~~l~~~~ 627 (683)
..+...+.+-.+....+...++..+.+|.+..++...-.... ...+. ....|.++...+++..|++.+
T Consensus 136 G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T 214 (307)
T 1zi0_A 136 GKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTAT 214 (307)
T ss_dssp CEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEE
T ss_pred CeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEE
Confidence 111223555555555556677788889998888875322111 11221 345577776655666788889
Q ss_pred cCCcEEEEeCCCCce-------eeEeecCCCCCCeeEEEEc-cCCeEEEeeCCCcEEEEeec
Q psy15995 628 LDTTIIIWSLASPAK-------HIIIKNAHPQSQITRLQWL-DNDLLVSVGQDCNTKIWEIA 681 (683)
Q Consensus 628 ~d~~v~iw~~~~~~~-------~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~v~vw~~~ 681 (683)
..|.++-.++..-.. ...+......+.+..+... ++..++..+.+|.+.-.+++
T Consensus 215 ~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~ 276 (307)
T 1zi0_A 215 QNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVS 276 (307)
T ss_dssp TTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGG
T ss_pred cCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecc
Confidence 999988887743211 1111111123556555544 55666777777777665554
No 363
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=82.96 E-value=31 Score=32.28 Aligned_cols=108 Identities=19% Similarity=0.137 Sum_probs=63.2
Q ss_pred ccCCCEEEEEECCCcEEEEECCC-------CceeeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCC---C---
Q psy15995 325 KPDGTQLLTASGDKTCKLWDIET-------KSVVSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNN---P--- 391 (683)
Q Consensus 325 ~~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~---~--- 391 (683)
-|+...+++.+.+|.|+--.+.. ++-...+..........+......+.++..+..|.+..+.... .
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~ 83 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSN 83 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcc
Confidence 46778899999999999865432 1223333344444444455555677888899999887766432 1
Q ss_pred --Cccee-eee-eccccEEEEEEeC---CCCEEEEEeCCCcEEEEcCC
Q psy15995 392 --STPIR-VIK-GHNKPITALALSP---DRGTVFTGSHDGFITRWNAK 432 (683)
Q Consensus 392 --~~~~~-~~~-~~~~~v~~~~~~~---~~~~l~~~~~dg~i~~w~~~ 432 (683)
+.++. .+. .....|.++..-+ +..+|+.++..|.++...+.
T Consensus 84 a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~ 131 (370)
T 3l6v_A 84 ARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLS 131 (370)
T ss_dssp SCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGG
T ss_pred cCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHH
Confidence 11111 111 1234555554332 34577788888888776653
No 364
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=82.62 E-value=28 Score=31.63 Aligned_cols=243 Identities=11% Similarity=0.074 Sum_probs=125.7
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCccee-------ccCCCCcceeEEEEe--CCeEEEEEcCCeEEEEeCCCCcccCCce
Q psy15995 412 PDRGTVFTGSHDGFITRWNAKTGENDRV-------QGAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLSSNAYSGPEV 482 (683)
Q Consensus 412 ~~~~~l~~~~~dg~i~~w~~~~~~~~~~-------~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~~ 482 (683)
++..++++.+.+|.|+--.+..-+.... ........+..+... .+.++..+..|.++.+....-.....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r-- 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR-- 83 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc--
Confidence 4567788899999998876543322111 111122333333333 67888888999888776543211100
Q ss_pred ecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEcc---CCCEEEEEcCCCcEEEEEcCCCccC---
Q psy15995 483 KLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDH---EHGLVAVGGADSKVHIYELNNKSLS--- 556 (683)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~--- 556 (683)
...+.+ + .....+.....+..+...+ +..+++..+..|.++...+..-...
T Consensus 84 ~~~G~~----i-------------------~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~ 140 (312)
T 1suu_A 84 ASKGQN----I-------------------SELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSR 140 (312)
T ss_dssp ----CB----G-------------------GGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----
T ss_pred cCCCcC----h-------------------hhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCC
Confidence 000000 0 0000111112233332222 4567888899999988877543211
Q ss_pred --cceeecCCcCeeEEEECCCCCEEEEEeCCCeEEEEECCCCccc-------cccceeeecccEEEEEecCCCCeEEEee
Q psy15995 557 --PKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELA-------HNKEWGFHSAKVNCVAWSPDSALVASGS 627 (683)
Q Consensus 557 --~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~-------~~~~~~~h~~~v~~~~~s~d~~~l~~~~ 627 (683)
....+...+.+..+....++..++..+.+|.+..+....-... ....+. ....|.++...+++..|++.+
T Consensus 141 G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt 219 (312)
T 1suu_A 141 GVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVS 219 (312)
T ss_dssp CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEE
T ss_pred cEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEE
Confidence 1112223556666665555667888889999999987642211 111221 244566666655666788889
Q ss_pred cCCcEEEEeCCCCcee-------eEeecC-CCCCCeeEE-EEccCCeEEEeeCCCcEEEEee
Q psy15995 628 LDTTIIIWSLASPAKH-------IIIKNA-HPQSQITRL-QWLDNDLLVSVGQDCNTKIWEI 680 (683)
Q Consensus 628 ~d~~v~iw~~~~~~~~-------~~~~~~-~~~~~v~~l-~~~~~~~l~s~~~d~~v~vw~~ 680 (683)
..|..+...+..-... ..+... .....+.++ .+.++..++..+..|.+.-..+
T Consensus 220 ~~G~~kr~~~~e~~~~~R~~kGv~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~ 281 (312)
T 1suu_A 220 ENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVA 281 (312)
T ss_dssp TTSEEEEEEGGGSCBCCTTCCCEECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEG
T ss_pred CCCceEEEEHHHhcccCCCCCCEEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 9999888887543211 111111 112344443 3445566666666675443333
No 365
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=82.08 E-value=33 Score=32.09 Aligned_cols=197 Identities=8% Similarity=0.059 Sum_probs=107.4
Q ss_pred ccceEEEEECCCCcEEEE--ecC-------------CCCEEEEeCCCc--ccccccccccCCCCcccceeeeeecceeee
Q psy15995 85 SCAVNVAKYSPSGFYIAS--GDI-------------SGKVRIWDTVNK--EHILKNEFHPIGGPIKDIGTLLSLTSIRNI 147 (683)
Q Consensus 85 ~~~v~~~~~s~d~~~las--~~~-------------dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 147 (683)
--.|..+...+++++-+. |-. --+|.+||+.++ +.++++.+...-. ........+
T Consensus 86 lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~--------~~~S~l~di 157 (381)
T 3q6k_A 86 LTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLV--------EKPTYFGGF 157 (381)
T ss_dssp SSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGC--------CCGGGEEEE
T ss_pred eEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhc--------ccCCccceE
Confidence 346888888888865553 211 125899999999 8888887753111 111445666
Q ss_pred Eee---cc----ceEEEee-cCCccEEEEeccccceeeecc--cccc--------------CCCeeEEEEcCC----CCe
Q psy15995 148 LVL---SI----GFYIASG-DISGKVRIWDTVNKEHILKNE--FHPI--------------GGPIKDIAWSPD----NQR 199 (683)
Q Consensus 148 ~~s---~~----~~~l~~~-~~d~~i~iwd~~~~~~~~~~~--~~~~--------------~~~i~~~~~s~~----~~~ 199 (683)
++. |+ +.++... ...+-|.|+|+.+++.-.... +.+. ...+..|+++|+ ++.
T Consensus 158 ~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~ 237 (381)
T 3q6k_A 158 AVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRP 237 (381)
T ss_dssp EEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCE
T ss_pred EEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeE
Confidence 666 22 3333333 346789999999875322111 1111 247889999998 788
Q ss_pred EEEEecCCceEEEEEE--ccCC---CceeeeecCC--cCeEEEEee-cCCCeEEEEeeCCCeEEEEcCCCC-----ceee
Q psy15995 200 MVVVGEGRERFGHVFM--SETG---TSVGEISGQS--KPINSCDFK-PSRPFRIITGSEDNTIAVFEGPPF-----KFKM 266 (683)
Q Consensus 200 l~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~--~~v~~~~~~-~~~~~~l~~~~~d~~i~iw~~~~~-----~~~~ 266 (683)
|....-.......|-. +... ..+..+-... ..-..+++. .+|. ++++--....|..|+..+. ....
T Consensus 238 LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~-ly~~~~~~~aI~~w~~~~~~~~~~n~~~ 316 (381)
T 3q6k_A 238 AYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKV-IFFAEANTKQVSCWNTQKMPLRMKNTDV 316 (381)
T ss_dssp EEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCE-EEEEESSSSEEEEEETTSCSBCGGGEEE
T ss_pred EEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCe-EEEEeccCCeEEEEeCCCCccccCceEE
Confidence 8877665533222211 1111 1122221111 233345665 4554 4667777889999997641 1111
Q ss_pred ecc-ccccCeEEEEECCCCCEEEEE
Q psy15995 267 TKQ-EHSRFVQAVRYSPSGSHFASA 290 (683)
Q Consensus 267 ~~~-~~~~~v~~~~~~~~~~~l~~~ 290 (683)
..+ ..-..+..+.+.++|.+.+..
T Consensus 317 l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 317 VYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EEECCCccccCeEEECCCCeEEEEE
Confidence 111 122345667666666544444
No 366
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=81.97 E-value=3.5 Score=41.33 Aligned_cols=58 Identities=24% Similarity=0.395 Sum_probs=46.1
Q ss_pred CeEEEeeCCCCCeEEEecC-------------CeEEEEeCCCCcccccccCc-ccceEEEEECCCCcEEEEe
Q psy15995 46 QPIVLGGDPKGKNFLYTNG-------------NSVIIRNIENPAISDIYTEH-SCAVNVAKYSPSGFYIASG 103 (683)
Q Consensus 46 ~~~~~~~s~~~~~l~~~~~-------------~~i~v~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~las~ 103 (683)
.+--|+|+|+|++++...+ +.+.+.+..++++.+.+.++ ...++.++|+||++.|...
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4457889999997777643 35777888889888888776 5789999999999888764
No 367
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=81.49 E-value=29 Score=30.98 Aligned_cols=186 Identities=13% Similarity=0.024 Sum_probs=101.5
Q ss_pred cCeEEEEECCCCCEEEEEcCCCcEEEEeCCCCeeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCceee
Q psy15995 273 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVS 352 (683)
Q Consensus 273 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 352 (683)
..|..++..... .++. . ||.|+.|-....-.+..-. .....|..++...+. .++. . ||.+..|-......+.
T Consensus 24 ~~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~--~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 24 SGVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPA--ATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SSCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCG--GGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTC
T ss_pred CCCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCc--cCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCC
Confidence 357777765443 2333 4 8999999754322111110 133467777765432 2333 4 8999999765432211
Q ss_pred EEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEeCCCCEEEEEeCCCcEEEEcCC
Q psy15995 353 EFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 432 (683)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~ 432 (683)
. +.........+.......++.. +|.+..|-.....+.- ........|..++...+. .++ -. ||.|..|-..
T Consensus 96 ~---P~~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~~-~~~-l~-~G~v~~wG~n 167 (282)
T 3qhy_B 96 V---PAEARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGVYT-ALA-VK-NGGVIAWGDN 167 (282)
T ss_dssp C---CGGGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSE-EEE-EE-TTEEEEEECC
T ss_pred C---CcccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCC-CCccCCCCeEEEEcccCE-EEE-EE-CCEEEEecCC
Confidence 0 1111123334444556666667 9999999876533321 111123457777654432 222 33 7999999765
Q ss_pred CCCcceeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCCc
Q psy15995 433 TGENDRVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSNA 476 (683)
Q Consensus 433 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~~ 476 (683)
........ ......|..++......+.. .||.+..|-.....
T Consensus 168 ~~gqlg~p-~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~g 209 (282)
T 3qhy_B 168 YFGQTTVP-AEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYK 209 (282)
T ss_dssp TTSTTSCC-GGGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTS
T ss_pred CCCCCCCc-eecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCC
Confidence 43332211 12235677777776665555 79999999876553
No 368
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=81.44 E-value=5.4 Score=39.46 Aligned_cols=59 Identities=24% Similarity=0.390 Sum_probs=45.6
Q ss_pred CCeEEEeeCCCCCeEEEecC-------------CeEEEEeCCCCcccccccCc-ccceEEEEECCCCcEEEEe
Q psy15995 45 GQPIVLGGDPKGKNFLYTNG-------------NSVIIRNIENPAISDIYTEH-SCAVNVAKYSPSGFYIASG 103 (683)
Q Consensus 45 ~~~~~~~~s~~~~~l~~~~~-------------~~i~v~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~las~ 103 (683)
+.+-.+.|+++|.+.+.... +.+..++..++++...+.+. ...++.++||||+++|.++
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 45567889999988775532 26888888888887777654 4679999999999988765
No 369
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=81.26 E-value=32 Score=31.40 Aligned_cols=234 Identities=11% Similarity=0.102 Sum_probs=126.9
Q ss_pred cCCCeEEEEeeCCCeEEEEcCCCCc----eeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCC---------CCe
Q psy15995 239 PSRPFRIITGSEDNTIAVFEGPPFK----FKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGA---------SAD 305 (683)
Q Consensus 239 ~~~~~~l~~~~~d~~i~iw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~---------~~~ 305 (683)
|+.+ .+++.+.+|.|+--.+...+ ....+. ..+.+..+........|+..+..|.++-+... .|.
T Consensus 3 ~~e~-~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASED-VIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCE-EEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCc-EEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 4444 48888999999877543221 111222 23445555555555667777778887666432 222
Q ss_pred eEEeccCCccccCeEEEEEccC---CCEEEEEECCCcEEEEECCCCce------eeEEEecCcceeceEEEEecCCEEEE
Q psy15995 306 LVSELGNPAHKGGVYAVAWKPD---GTQLLTASGDKTCKLWDIETKSV------VSEFIMGNQVEDQQVSCLWQGDYLLT 376 (683)
Q Consensus 306 ~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~ 376 (683)
.+..+-.......|.++...++ +.+++..+.+|.++...+..... +..+.................+.++.
T Consensus 81 ~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l 160 (323)
T 1wp5_A 81 HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFL 160 (323)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEE
T ss_pred ChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEE
Confidence 2222111113445666544332 56789999999999988753221 11112222223333333346678999
Q ss_pred EecCCcEEEEecCCCCc------ceeeee-eccccEEEEEEeCCCC-EEEEEeCCCcEEEEcCCCCC-------cceecc
Q psy15995 377 VSLSGFISYLDVNNPST------PIRVIK-GHNKPITALALSPDRG-TVFTGSHDGFITRWNAKTGE-------NDRVQG 441 (683)
Q Consensus 377 ~~~~g~i~~~~~~~~~~------~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~w~~~~~~-------~~~~~~ 441 (683)
.+.+|.+..+....-.. -++.+. .....|.++...+++. .+++.+..|..+..++..-. -.....
T Consensus 161 ~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~ 240 (323)
T 1wp5_A 161 VTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILR 240 (323)
T ss_dssp EETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSC
T ss_pred EeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECee
Confidence 99999998887753111 111111 1234566665544445 78888888887776654311 111111
Q ss_pred --CCCCcceeEE-EEe-CCeEEEEEcCCeEEEEeCCC
Q psy15995 442 --AGHGNQINGM-KAT-GELLYTCGIDDTIKQVDLSS 474 (683)
Q Consensus 442 --~~~~~~v~~~-~~~-~~~l~~~~~d~~i~~~~~~~ 474 (683)
......+..+ ... ++.++..+..|.+....+..
T Consensus 241 ~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 241 ELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred ecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 1122234433 333 56777888888877766654
No 370
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=80.85 E-value=39 Score=32.01 Aligned_cols=217 Identities=11% Similarity=0.064 Sum_probs=101.9
Q ss_pred CeeEEEEcCC--CCeEEEEecCCceEEEEEEc-cCCCceeeeec-------------------CCcCeEEEEeecCCCeE
Q psy15995 187 PIKDIAWSPD--NQRMVVVGEGRERFGHVFMS-ETGTSVGEISG-------------------QSKPINSCDFKPSRPFR 244 (683)
Q Consensus 187 ~i~~~~~s~~--~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------------------~~~~v~~~~~~~~~~~~ 244 (683)
.|.++++.|. ...+.++.... .++.. +.++.-..+.. ....+.++.+.|..+..
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~g----gl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~ 191 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQ----GLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKH 191 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETT----EEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTC
T ss_pred ceeEEEeCCCCCCCEEEEEecCC----cEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCE
Confidence 5778999872 45566655432 23333 33433222211 12357889998853323
Q ss_pred EEEeeCCCeEEEEcCCCCceeeeccc----c--------ccCeEEEEECCC-CCEEEEEcCCCcEEEEeCCCCeeEEecc
Q psy15995 245 IITGSEDNTIAVFEGPPFKFKMTKQE----H--------SRFVQAVRYSPS-GSHFASAGFDGKVFLYDGASADLVSELG 311 (683)
Q Consensus 245 l~~~~~d~~i~iw~~~~~~~~~~~~~----~--------~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 311 (683)
+..+..++.+...+-........... + ...+.++++.|+ ...|.++...+ |...+ ..++.-..+.
T Consensus 192 l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~-D~G~tW~~~~ 269 (394)
T 3b7f_A 192 LYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD-RREGVWKRIG 269 (394)
T ss_dssp EEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE-TTTTEEECGG
T ss_pred EEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC-CCCCcceECC
Confidence 55565555555443221111111100 0 134889999986 35666666444 55544 2333333332
Q ss_pred CCccc---cCeEEEEEcc-CCCEEEEEEC-----------CCcEEEEECCC-CceeeEEEecCcc-------eeceEEEE
Q psy15995 312 NPAHK---GGVYAVAWKP-DGTQLLTASG-----------DKTCKLWDIET-KSVVSEFIMGNQV-------EDQQVSCL 368 (683)
Q Consensus 312 ~~~~~---~~i~~~~~~~-~~~~l~~~~~-----------dg~i~iwd~~~-~~~~~~~~~~~~~-------~~~~~~~~ 368 (683)
..... ..+..+++.| +...++++.. ++...+|.... ++....+...-+. ....+.+.
T Consensus 270 ~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~ 349 (394)
T 3b7f_A 270 DAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTAD 349 (394)
T ss_dssp GGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEEC
T ss_pred CCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEEC
Confidence 10111 3457788876 3445555542 23345555544 3333333211111 01235555
Q ss_pred ec-CCEEEEEecCCcEEEEecCCCCcceeeeeeccccEEEEEEe
Q psy15995 369 WQ-GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALS 411 (683)
Q Consensus 369 ~~-~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 411 (683)
+. ...+++++..+.+..- ......-..+..+-..+.+++|.
T Consensus 350 p~~~~~l~~g~~~g~l~~S--~D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 350 AHAPVGVYFGTTGGEIWAS--ADEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp CSSSCCEEEECTTSCEEEE--SSTTSBCEEEECSCSCEEEEEEE
T ss_pred CCCCCEEEEEeCCCeEEEE--CCCCCCceEcccCCCCeeEEEEe
Confidence 53 3556666655554433 22233333344344456666653
No 371
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=79.77 E-value=33 Score=30.51 Aligned_cols=155 Identities=12% Similarity=0.039 Sum_probs=90.3
Q ss_pred CcCeEEEEeec--CCCeEEEEeeCCCeEEEEcCCCCc------eeeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEe
Q psy15995 229 SKPINSCDFKP--SRPFRIITGSEDNTIAVFEGPPFK------FKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYD 300 (683)
Q Consensus 229 ~~~v~~~~~~~--~~~~~l~~~~~d~~i~iw~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 300 (683)
...|..+.. + +++ .++..+.+|.++...+.... ....+. ..+.+..+........++..+..|.+..++
T Consensus 67 ~e~i~~v~~-~~~~~~-~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~ 143 (276)
T 3no0_A 67 EEKIVGAFI-REKFGN-RLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFS 143 (276)
T ss_dssp TCCEEEEEE-GGGSCS-EEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEE
T ss_pred CCEEEEEEC-CcCCCC-EEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEE
Confidence 455665543 3 345 48999999999998765542 112222 235566666666666788888899988886
Q ss_pred CCCC-------eeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCce-------eeEEEecCcceeceEE
Q psy15995 301 GASA-------DLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSV-------VSEFIMGNQVEDQQVS 366 (683)
Q Consensus 301 ~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~ 366 (683)
...- .-+..+.. .....|..+...+++..++..+..|.++...+..-.. +..+ ..........
T Consensus 144 ~~eip~~gR~a~Gv~~i~L-~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i--~~~~~lv~~~ 220 (276)
T 3no0_A 144 VREVPPSTPGARGVQGIKL-EKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS--GTKDTLVDLI 220 (276)
T ss_dssp GGGSCBCCTTCCCEECCCC-CTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC--CSSSCEEEEE
T ss_pred hhhCCCcCCCCCCEEEEcc-CCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE--cCCCcEEEEE
Confidence 4321 11122222 1345677776666677899999999999888753221 1122 1111222222
Q ss_pred EEecCCEEEEEecCCcEEE--EecC
Q psy15995 367 CLWQGDYLLTVSLSGFISY--LDVN 389 (683)
Q Consensus 367 ~~~~~~~l~~~~~~g~i~~--~~~~ 389 (683)
...+++.++..+.+|.+.. ++..
T Consensus 221 ~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 221 PIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 2223446666777777666 6654
No 372
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=78.28 E-value=41 Score=30.75 Aligned_cols=245 Identities=10% Similarity=0.090 Sum_probs=126.0
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCc--ceeccCCCCcceeEEEE-e-CCeEEEEEcCCeEEEEeCCCCcccCCceecCCC
Q psy15995 412 PDRGTVFTGSHDGFITRWNAKTGEN--DRVQGAGHGNQINGMKA-T-GELLYTCGIDDTIKQVDLSSNAYSGPEVKLGSQ 487 (683)
Q Consensus 412 ~~~~~l~~~~~dg~i~~w~~~~~~~--~~~~~~~~~~~v~~~~~-~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~ 487 (683)
|+...+++.+.+|.|+--.+..-+. ...........+..+.. + .+.++..+..|.+..+....-......
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~------ 76 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWK------ 76 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTT------
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCC------
Confidence 5566788888999888764431110 00011112233333332 2 778888888898776665432111100
Q ss_pred CceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEE-EEcc--CCCEEEEEcCCCcEEEEEcCCCccCc------c
Q psy15995 488 PRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSI-SLDH--EHGLVAVGGADSKVHIYELNNKSLSP------K 558 (683)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~------~ 558 (683)
..+..+. ....+.....+..+ .+.+ ++.+++..+.+|.++...+..-.... .
T Consensus 77 a~G~~i~-------------------~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~a 137 (323)
T 1wp5_A 77 DLGQHIA-------------------NIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTG 137 (323)
T ss_dssp SCCEEGG-------------------GTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEEC
T ss_pred CCCcChh-------------------hccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEE
Confidence 0000000 00011112223332 2222 25678888999999998875332211 1
Q ss_pred eeecCCcCeeEEEECCCCCEEEEEeCCCeEEEEECCCCccc-------cccceeeecccEEEEEecCCCC-eEEEeecCC
Q psy15995 559 AELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELA-------HNKEWGFHSAKVNCVAWSPDSA-LVASGSLDT 630 (683)
Q Consensus 559 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~-------~~~~~~~h~~~v~~~~~s~d~~-~l~~~~~d~ 630 (683)
..+...+.+-.+....+...++..+.+|.+..+....-... ....+. ....|.++...+++. .|++.+..|
T Consensus 138 i~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G 216 (323)
T 1wp5_A 138 INLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRG 216 (323)
T ss_dssp SCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTS
T ss_pred EEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCC
Confidence 11223355655555555667888888999988887532211 111221 234566665544444 788888898
Q ss_pred cEEEEeCCCCce-------eeEeecC-CCCCCeeEEEE-ccCCeEEEeeCCCcEEEEeecc
Q psy15995 631 TIIIWSLASPAK-------HIIIKNA-HPQSQITRLQW-LDNDLLVSVGQDCNTKIWEIAP 682 (683)
Q Consensus 631 ~v~iw~~~~~~~-------~~~~~~~-~~~~~v~~l~~-~~~~~l~s~~~d~~v~vw~~~~ 682 (683)
..+..++..-.. ...++.. .....+..+.. .+++.++..+..|.+...+++.
T Consensus 217 ~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 217 AVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp EEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred ceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 888777654211 1111111 11224554333 3556677777788776666553
No 373
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=76.67 E-value=52 Score=31.11 Aligned_cols=191 Identities=10% Similarity=0.056 Sum_probs=104.3
Q ss_pred CCEEEEEcCCCcEEEEeCCCC-----------eeEEeccCCccccCeEEEEEccCCCEEEEEECCCcEEEEECCCCc---
Q psy15995 284 GSHFASAGFDGKVFLYDGASA-----------DLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKS--- 349 (683)
Q Consensus 284 ~~~l~~~~~dg~i~iw~~~~~-----------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--- 349 (683)
....+....||.|+.|-.... .....+.. .....+..++.+......+....||.|..|-.....
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG 140 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLES-IQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 140 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGG-GTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTC
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEccc-ccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCC
Confidence 345555667899999953321 11111111 123345556666666677777889999999653211
Q ss_pred -----eeeEE-EecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCc-----------ceeeeeeccccEEEEEEeC
Q psy15995 350 -----VVSEF-IMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPST-----------PIRVIKGHNKPITALALSP 412 (683)
Q Consensus 350 -----~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~-----------~~~~~~~~~~~v~~~~~~~ 412 (683)
..... ............+.......++...+|.+..|-.....+ +..........|..++...
T Consensus 141 ~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~ 220 (389)
T 3kci_A 141 HGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGS 220 (389)
T ss_dssp SSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECC
T ss_pred CCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcC
Confidence 01111 111111113344455677778888899999997543111 1110011223466666544
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCCc----------c-eeccCCCCcceeEEEEeCCeEEEEEcCCeEEEEeCCCC
Q psy15995 413 DRGTVFTGSHDGFITRWNAKTGEN----------D-RVQGAGHGNQINGMKATGELLYTCGIDDTIKQVDLSSN 475 (683)
Q Consensus 413 ~~~~l~~~~~dg~i~~w~~~~~~~----------~-~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~~~~~~~ 475 (683)
...+.+.-..||.|..|-...... . ..........|..+.......+....+|.+..|-....
T Consensus 221 g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~ 294 (389)
T 3kci_A 221 GDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDY 294 (389)
T ss_dssp SSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGG
T ss_pred CCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Confidence 335666667899999995432111 0 11111122346677777777788889999999986543
No 374
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=73.15 E-value=54 Score=29.68 Aligned_cols=242 Identities=13% Similarity=0.110 Sum_probs=122.8
Q ss_pred cCCCEEEEEECCCcEEEEECCCCceee-------EEEecCcceeceEEEEecCCEEEEEecCCcEEEEecC---CCC---
Q psy15995 326 PDGTQLLTASGDKTCKLWDIETKSVVS-------EFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVN---NPS--- 392 (683)
Q Consensus 326 ~~~~~l~~~~~dg~i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~---~~~--- 392 (683)
|+...+++.+.+|.|+--.+...+... .+.................+.++..+..|.+..+... ...
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 355678888999999887765433211 1111222233344445577889999999987776553 211
Q ss_pred --ccee-eee-eccccEEEEEEe---CCCCEEEEEeCCCcEEEEcCCCCCcc-----eeccCCCCcceeEEEEe--CCeE
Q psy15995 393 --TPIR-VIK-GHNKPITALALS---PDRGTVFTGSHDGFITRWNAKTGEND-----RVQGAGHGNQINGMKAT--GELL 458 (683)
Q Consensus 393 --~~~~-~~~-~~~~~v~~~~~~---~~~~~l~~~~~dg~i~~w~~~~~~~~-----~~~~~~~~~~v~~~~~~--~~~l 458 (683)
.++. .+. .....|.++..- +++.+++..+..|.++-..+..-... ..........+..+... .+.+
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~i 160 (307)
T 1zi0_A 81 RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEV 160 (307)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCEE
T ss_pred CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCEE
Confidence 1111 111 234456666443 34567889999999988865421111 11111122444444433 5678
Q ss_pred EEEEcCCeEEEEeCCCCcccCCceecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEccCCCEEEE
Q psy15995 459 YTCGIDDTIKQVDLSSNAYSGPEVKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLDHEHGLVAV 538 (683)
Q Consensus 459 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 538 (683)
+..+.+|.+..++...-..... ... +.....+.....+..+....++..+++
T Consensus 161 ~l~T~~G~~irf~~~~v~~~gr------~a~----------------------Gv~~i~L~~~d~Vv~~~~~~~~~~ll~ 212 (307)
T 1zi0_A 161 MLFSAEGKVVRFKESSVRAMGC------NTT----------------------GVRGIRLGEGDKVVSLIVPRGDGAILT 212 (307)
T ss_dssp EEEETTSEEEEEEGGGSCBCCT------TCC----------------------CEECCCCCTTCCEEEEECCCSSCEEEE
T ss_pred EEECCCCcEEEEEHHHcCccCC------CCC----------------------CeEeEEeCCCCEEEEEEEecCCCEEEE
Confidence 8889999988887654321110 000 111111222233444443344567888
Q ss_pred EcCCCcEEEEEcCCCccCcce-------ee-cCCcCeeEEEECCCCCEEEEEeCCCeEEEEECCC
Q psy15995 539 GGADSKVHIYELNNKSLSPKA-------EL-DHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 595 (683)
Q Consensus 539 ~~~dg~i~i~d~~~~~~~~~~-------~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~ 595 (683)
.+..|.++-.++..-....+. .. ...+.+-.+....+...++..+.+|.+.-++...
T Consensus 213 ~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 213 ATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 888898888877432211110 01 1224444443333344455566667666666544
No 375
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=72.60 E-value=63 Score=30.24 Aligned_cols=169 Identities=8% Similarity=-0.034 Sum_probs=90.8
Q ss_pred cEEEEecccc--ceeeecccccc----CCCeeEEEEc---CC---CCeEEEEecCCceEEEEEEccCCCceeeeec----
Q psy15995 164 KVRIWDTVNK--EHILKNEFHPI----GGPIKDIAWS---PD---NQRMVVVGEGRERFGHVFMSETGTSVGEISG---- 227 (683)
Q Consensus 164 ~i~iwd~~~~--~~~~~~~~~~~----~~~i~~~~~s---~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 227 (683)
.|.+||+.++ +.+..+.++.. ...+..+++. |+ +...+...+....-+.|+++.+++..+.+..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5788899888 77766666432 2457778877 32 1344555554455578888887765544321
Q ss_pred ----------C----CcCeEEEEeecC----CCeEEEEeeCCC-eEEEEc---CCCCcee--eeccccc---cCeEEEEE
Q psy15995 228 ----------Q----SKPINSCDFKPS----RPFRIITGSEDN-TIAVFE---GPPFKFK--MTKQEHS---RFVQAVRY 280 (683)
Q Consensus 228 ----------~----~~~v~~~~~~~~----~~~~l~~~~~d~-~i~iw~---~~~~~~~--~~~~~~~---~~v~~~~~ 280 (683)
. ...+..++.+|+ ++. |.-..-.+ .+.--. ++..... ....+.. ..-..+++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~-LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRP-AYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCE-EEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeE-EEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 0 236778888887 554 33333322 222221 1111111 1111112 23345667
Q ss_pred C-CCCCEEEEEcCCCcEEEEeCCC-C----eeEEeccCCccccCeEEEEEccCCCEEEEE
Q psy15995 281 S-PSGSHFASAGFDGKVFLYDGAS-A----DLVSELGNPAHKGGVYAVAWKPDGTQLLTA 334 (683)
Q Consensus 281 ~-~~~~~l~~~~~dg~i~iw~~~~-~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 334 (683)
. .+|..+++--....|..|+..+ . ........+ .-..+..+.+.+++.+.+..
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~-~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS-RFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT-TCCSEEEEEECTTSCEEEEE
T ss_pred eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC-CccccCeEEECCCCeEEEEE
Confidence 5 6777777777788999999765 1 111112211 23346677776666544443
No 376
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.43 E-value=1.1e+02 Score=33.09 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=34.4
Q ss_pred cCeEEEEEccCCCEEEEEECCCcEEEEECCCCceeeEEEe
Q psy15995 317 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSVVSEFIM 356 (683)
Q Consensus 317 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 356 (683)
..+.+++..++..++++.+.|+++|+|++.+++++.+...
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 3567788888888999999999999999999998877654
No 377
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=68.02 E-value=6.1 Score=44.00 Aligned_cols=40 Identities=8% Similarity=0.068 Sum_probs=33.4
Q ss_pred ceEEEEECCCCcEEEEecCCCCEEEEeCCCcccccccccc
Q psy15995 87 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH 126 (683)
Q Consensus 87 ~v~~~~~s~d~~~las~~~dg~i~iwd~~~~~~~~~~~~~ 126 (683)
.+.+++..++.++|++-+.|+++|||++.+++++.+....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 4556667788899999999999999999999988776543
No 378
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=65.35 E-value=17 Score=36.00 Aligned_cols=62 Identities=13% Similarity=0.163 Sum_probs=42.0
Q ss_pred cCeeEEEECCCCCEEEEEeCC------------CeEEEEECCCCccccccceeeecccEEEEEecCCCCeEEEee
Q psy15995 565 GPVTDCSFSPSNEYLVASDAH------------RKVVLYRVPDFELAHNKEWGFHSAKVNCVAWSPDSALVASGS 627 (683)
Q Consensus 565 ~~v~~~~~s~~~~~l~~~~~d------------~~i~i~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~~~~ 627 (683)
.....|.|+++|.+.++.+.. ..+..++..++++....... ....++.++||||++.|.++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P-~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP-IGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECC-TTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCC-CCccccCCEECCCCCEEEEEE
Confidence 456789999999888754421 25666666677764332110 235789999999999887753
No 379
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=61.19 E-value=19 Score=36.20 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=41.7
Q ss_pred CcEEEEccCCCEEEEEcCC------------CcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEE
Q psy15995 524 PSSISLDHEHGLVAVGGAD------------SKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS 582 (683)
Q Consensus 524 ~~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 582 (683)
+-.++|+|.|+++++-..+ ..+.+.+..++++.+.........++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4568899999876664432 2355666666766544444567889999999999988765
No 380
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=56.73 E-value=1.3e+02 Score=28.12 Aligned_cols=245 Identities=13% Similarity=0.112 Sum_probs=127.5
Q ss_pred eCCCCEEEEEeCCCcEEEEcCCC-------CCcceeccCCCCcceeEEEEe--CCeEEEEEcCCeEEEEeCCCCcccCCc
Q psy15995 411 SPDRGTVFTGSHDGFITRWNAKT-------GENDRVQGAGHGNQINGMKAT--GELLYTCGIDDTIKQVDLSSNAYSGPE 481 (683)
Q Consensus 411 ~~~~~~l~~~~~dg~i~~w~~~~-------~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~ 481 (683)
-|+..++++.+.+|.|+--.+.. ++-...........+..+... .+.++..+..|.+..+....-.....
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r- 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS- 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT-
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc-
Confidence 46778899999999998764322 111111112233444444333 66788888888877665432211100
Q ss_pred eecCCCCceeeecCCeEEEEEeceEEEEeCCceeeeecCCCCCcEEEEc---cCCCEEEEEcCCCcEEEEEcCCCccCc-
Q psy15995 482 VKLGSQPRGLDIDENTLVTVTVKQISIVENGAKVSSLPIDYEPSSISLD---HEHGLVAVGGADSKVHIYELNNKSLSP- 557 (683)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~- 557 (683)
...+... .....+.....+.++..- .+..+|+.++..|.++...+..-....
T Consensus 83 -----~a~G~~i-------------------~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~ 138 (370)
T 3l6v_A 83 -----NARGRPI-------------------INWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLA 138 (370)
T ss_dssp -----TSCCEEG-------------------GGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCT
T ss_pred -----ccCCcCH-------------------hhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccC
Confidence 0000000 000011112233333222 245689999999999988875432211
Q ss_pred ----ceeecCCcCeeEEEECCCCCEEEEEeCCCeEEEEECCCCcccc-------ccceeeecccEEEEEecC--------
Q psy15995 558 ----KAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFELAH-------NKEWGFHSAKVNCVAWSP-------- 618 (683)
Q Consensus 558 ----~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~-------~~~~~~h~~~v~~~~~s~-------- 618 (683)
...+...+.+-.+....+...++..+..|.+..++...-.... ...+. ....|.++...+
T Consensus 139 ~G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~ 217 (370)
T 3l6v_A 139 RGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDE 217 (370)
T ss_dssp TCEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC------
T ss_pred CceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEeccccccccc
Confidence 1112234555555555556678888889998888865322111 11111 234555555443
Q ss_pred ---------------------------CCCeEEEeecCCcEEEEeCCCCcee-------eEeecCCCCCCeeEEEEc-cC
Q psy15995 619 ---------------------------DSALVASGSLDTTIIIWSLASPAKH-------IIIKNAHPQSQITRLQWL-DN 663 (683)
Q Consensus 619 ---------------------------d~~~l~~~~~d~~v~iw~~~~~~~~-------~~~~~~~~~~~v~~l~~~-~~ 663 (683)
++..|++.+..|..+...+..-... ..++.....+.+..+.+. ++
T Consensus 218 ~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~ 297 (370)
T 3l6v_A 218 VEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGST 297 (370)
T ss_dssp -----------------------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTT
T ss_pred cccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCC
Confidence 4568889999998888877542221 112222223456665544 55
Q ss_pred CeEEEeeCCCcEEEEeec
Q psy15995 664 DLLVSVGQDCNTKIWEIA 681 (683)
Q Consensus 664 ~~l~s~~~d~~v~vw~~~ 681 (683)
+.++..+..|.+.-..++
T Consensus 298 d~i~liT~~G~~iR~~v~ 315 (370)
T 3l6v_A 298 DEVMLISDGGTLVRTRGS 315 (370)
T ss_dssp CEEEEEETTCCEEEEEGG
T ss_pred ceEEEEcCCCeEEEeeHh
Confidence 566666777766555443
No 381
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=53.97 E-value=1.1e+02 Score=26.64 Aligned_cols=146 Identities=13% Similarity=0.078 Sum_probs=78.5
Q ss_pred EEEEeeCCCeEEEEcCCCCce-eeeccccccCeEEEEECCCCCEEEEEcCCCcEEEEeCC---C----CeeEEeccCCcc
Q psy15995 244 RIITGSEDNTIAVFEGPPFKF-KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGA---S----ADLVSELGNPAH 315 (683)
Q Consensus 244 ~l~~~~~d~~i~iw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~---~----~~~~~~~~~~~~ 315 (683)
..++.+.+|.|+--....... ...+.. .+.+..+........|+..+..|.++-+... . |..+...-....
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke-~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~ 82 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKA-GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPP 82 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCT-TCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCT
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCC-CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCC
Confidence 366677788877665433211 112222 3344444444444456666678887665432 2 222111111113
Q ss_pred ccCeEEEEEccCCCEEEEEECCCcEEEEECCCCce-----eeEEEecCcceeceEEEE-ecCCEEEEEecCCcEEEEecC
Q psy15995 316 KGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSV-----VSEFIMGNQVEDQQVSCL-WQGDYLLTVSLSGFISYLDVN 389 (683)
Q Consensus 316 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~g~i~~~~~~ 389 (683)
...|.++....++.+++.++..|.++...+..-.. ...+.............. ..++.++..+.+|.+..+...
T Consensus 83 ~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ 162 (256)
T 1zvt_A 83 GATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVS 162 (256)
T ss_dssp TCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHH
Confidence 45677775444667788899999999988743211 111111122222233333 346688889999988888775
Q ss_pred C
Q psy15995 390 N 390 (683)
Q Consensus 390 ~ 390 (683)
.
T Consensus 163 e 163 (256)
T 1zvt_A 163 D 163 (256)
T ss_dssp G
T ss_pred H
Confidence 4
No 382
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=53.40 E-value=1.1e+02 Score=26.58 Aligned_cols=143 Identities=10% Similarity=0.033 Sum_probs=81.0
Q ss_pred EEEEEcCCCcEEEEEcCCCccCcceeecCCcCeeEEEECCCCCEEEEEeCCCeEEEEECC---CC----ccc-cccceee
Q psy15995 535 LVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP---DF----ELA-HNKEWGF 606 (683)
Q Consensus 535 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~---~~----~~~-~~~~~~~ 606 (683)
.+++.+.+|.|+--........ ...+...+.+..+........|+..+..|.++-+... .+ ..+ ....+.
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~-~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~- 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAP-GLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP- 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCST-TSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC-
T ss_pred EEEEEeCCCEEEEeeCCcCCce-eccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC-
Confidence 3455567777766554432211 1122344455555544455566667778876655443 22 111 111222
Q ss_pred ecccEEEEEecCCCCeEEEeecCCcEEEEeCCCC-------ceeeEeecCCCCCCeeEEEEc--cCCeEEEeeCCCcEEE
Q psy15995 607 HSAKVNCVAWSPDSALVASGSLDTTIIIWSLASP-------AKHIIIKNAHPQSQITRLQWL--DNDLLVSVGQDCNTKI 677 (683)
Q Consensus 607 h~~~v~~~~~s~d~~~l~~~~~d~~v~iw~~~~~-------~~~~~~~~~~~~~~v~~l~~~--~~~~l~s~~~d~~v~v 677 (683)
....|.++....++.+|+.++..|.++...+..- .....+.. .+.+..+... +++.++..+.+|.+..
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~---~d~lv~~~~~~~~~~~i~l~T~~G~~lr 158 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE---NAHVMPPVVIEDASDMLLAITQAGRMLM 158 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT---TCCBCCCEECCCTTCEEEEEETTSEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC---CCEEEEEEEecCCCCEEEEEcCCCeEEE
Confidence 3456777755456677888999999999887432 11122222 3455555554 4567888899999888
Q ss_pred Eeecc
Q psy15995 678 WEIAP 682 (683)
Q Consensus 678 w~~~~ 682 (683)
+.++.
T Consensus 159 f~~~e 163 (256)
T 1zvt_A 159 FPVSD 163 (256)
T ss_dssp EEGGG
T ss_pred EEHHH
Confidence 87754
No 383
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=48.28 E-value=2.3e+02 Score=29.24 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=27.0
Q ss_pred eccceEEEeecCCccEEEEeccccceeeeccc
Q psy15995 150 LSIGFYIASGDISGKVRIWDTVNKEHILKNEF 181 (683)
Q Consensus 150 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 181 (683)
..+..+|++-+.|.++|+||+.+++++....+
T Consensus 228 ~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 228 LFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 33577999999999999999999987766665
No 384
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=47.23 E-value=82 Score=23.10 Aligned_cols=60 Identities=10% Similarity=-0.002 Sum_probs=36.9
Q ss_pred eEEEeeCCCCCeEEEecCCeEEEEeCCCCcccccccCcccceEEEEECCCCcEEEEecCCCCEEEEeCCC
Q psy15995 47 PIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 116 (683)
Q Consensus 47 ~~~~~~s~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~dg~i~iwd~~~ 116 (683)
...+.+..||.++.+..+..-.+|...+... + .-..+.+..+|.+++.-. ++.+ +|...+
T Consensus 25 ~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~-----~---~~~~l~l~~dGNLVl~d~-~~~~-iW~S~t 84 (113)
T 3mez_B 25 DYSLVMRDDCNLVLTKGSKTNIVWESGTSGR-----G---QHCFMRLGHSGELDITDD-RLNT-VFVSNT 84 (113)
T ss_dssp TEEEEECTTSCEEEEETTTTEEEEECCCTTS-----C---SSCEEEECTTSCEEEECT-TSCE-EEECSC
T ss_pred CEEEEEcCCCEEEEEECCCCEEEEECCcccC-----C---cCEEEEEeCCCcEEEECC-CCCE-EEECCC
Confidence 3456678888888876533445787654321 1 123567888998877643 4444 787554
No 385
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=45.54 E-value=31 Score=38.46 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=33.0
Q ss_pred cceeeeEeeccceEEEeecCCccEEEEeccccceeeeccc
Q psy15995 142 TSIRNILVLSIGFYIASGDISGKVRIWDTVNKEHILKNEF 181 (683)
Q Consensus 142 ~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 181 (683)
..+.+++..++..++++-+.|+++|+|++.+++++....+
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 3456677778888999999999999999999987766554
No 386
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=38.99 E-value=3.6e+02 Score=28.15 Aligned_cols=52 Identities=8% Similarity=0.097 Sum_probs=28.4
Q ss_pred eeeccCCCCCCceeecCCCCCCceeeecccceeecCCCccc------CCCeEEEeeCCC
Q psy15995 3 FATLPRTQRGQPIVLGGDPKGKNFLYTNGNKYIFATLPRTQ------RGQPIVLGGDPK 55 (683)
Q Consensus 3 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~ 55 (683)
+.+|.|+|....+++.+...+-.+.... ....+..+.... ...+..++++|.
T Consensus 25 i~~i~~~p~~~~~~~~~~~~ggv~rS~D-~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~ 82 (737)
T 2cn3_A 25 MPGIVFNETEKDLIYARAAIGGAYRWDP-STETWIPLLDHFQMDEYSYYGVESIATDPV 82 (737)
T ss_dssp CCEEEECSSSTTCEEEECSSSCEEEEET-TTTEEEECCTTCCGGGGGGGCEEEEEECSS
T ss_pred eeEEEECCCCCCEEEEEecCCcEEEeCC-CCCCEEECcCccCcccccCCCcceEEeCCC
Confidence 4678899986555555555555544442 223333332211 134778889883
No 387
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=37.46 E-value=3.9e+02 Score=28.16 Aligned_cols=156 Identities=10% Similarity=0.009 Sum_probs=70.8
Q ss_pred ccceEEEEECCC-CcEEEEecCCCCEEEEeCCCcccccccccccCCCCcccceeeeeecceeeeEeecc-ceEEEeecCC
Q psy15995 85 SCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIGTLLSLTSIRNILVLSI-GFYIASGDIS 162 (683)
Q Consensus 85 ~~~v~~~~~s~d-~~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~d 162 (683)
.+.|.+|+++|. ...+..+...+.|...+ ..++.-..+.... . . .......+..+++.|. ...+..+..+
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~-~----~--~~~~~~~i~~ia~dp~~~~~i~~~~g~ 85 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFI-E----A--QDMNIMGTESIALDPNNPDRLYLAQGR 85 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTC-C----G--GGGGGCSEEEEEEETTEEEEEEEEECS
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCC-C----c--ccccCCceeEEEECCCCCCEEEEEeCc
Confidence 468999999995 34555566666665554 2232211111100 0 0 0001145888889874 3333333222
Q ss_pred cc----EEEEeccccceeeec-cc--c-----ccCCCeeEEEEcCCC-CeEEEEecCCceEEEEEEccCCCceeeeec--
Q psy15995 163 GK----VRIWDTVNKEHILKN-EF--H-----PIGGPIKDIAWSPDN-QRMVVVGEGRERFGHVFMSETGTSVGEISG-- 227 (683)
Q Consensus 163 ~~----i~iwd~~~~~~~~~~-~~--~-----~~~~~i~~~~~s~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 227 (683)
.. -.||.-.++-..... .. . .....+..+++.|.. ..++++.... ......+.|+.-..+..
T Consensus 86 ~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~---gl~~S~DgG~TW~~~~~~~ 162 (789)
T 1sqj_A 86 YVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTE---GIWKSSDRAKTWTNVTSIP 162 (789)
T ss_dssp CTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSS---CEEEESSTTSSCEEETTSC
T ss_pred cCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccC---CEEEECCCCcccCCCccCc
Confidence 11 334433332111111 11 0 001135678888754 3444443222 12233333443332221
Q ss_pred ----CCcCeEEEEeecCCCeEEEEeeCC
Q psy15995 228 ----QSKPINSCDFKPSRPFRIITGSED 251 (683)
Q Consensus 228 ----~~~~v~~~~~~~~~~~~l~~~~~d 251 (683)
....+..+.++|..+..++.+..+
T Consensus 163 ~~~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 163 DAFTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CCCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred cccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 124578899988654346666554
No 388
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=37.09 E-value=3.8e+02 Score=27.93 Aligned_cols=107 Identities=12% Similarity=0.035 Sum_probs=54.0
Q ss_pred ceeeeEeeccc-eEEEeecCCccEEEEeccccceeeecccc--c----cCCCeeEEEEcCC-CCeEEEEecCC------c
Q psy15995 143 SIRNILVLSIG-FYIASGDISGKVRIWDTVNKEHILKNEFH--P----IGGPIKDIAWSPD-NQRMVVVGEGR------E 208 (683)
Q Consensus 143 ~i~~~~~s~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~----~~~~i~~~~~s~~-~~~l~~~~~~~------~ 208 (683)
.|..++++|.. ..+.++...+.|..++-.... ...... . ....+.++++.|. ...++++.... .
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~t--W~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~ 101 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPSTET--WIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPN 101 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETTTTE--EEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCCCCC--EEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccC
Confidence 68889999863 345555555655554422221 111111 0 1245899999984 44555554210 0
Q ss_pred eEEEEEEccCCCceeeeec-C--------CcCeEEEEeecCCCeEEEEeeCC
Q psy15995 209 RFGHVFMSETGTSVGEISG-Q--------SKPINSCDFKPSRPFRIITGSED 251 (683)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~-~--------~~~v~~~~~~~~~~~~l~~~~~d 251 (683)
........+.|+.-..+.. . ...+..++++|..+..++.+...
T Consensus 102 ~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 102 MGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp CCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred CccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 1123333444543333221 1 11246799998765556666633
No 389
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=29.26 E-value=3.7e+02 Score=25.34 Aligned_cols=197 Identities=11% Similarity=0.049 Sum_probs=100.7
Q ss_pred cCeEEEEECCCCCEEEEEcCCCcEEEEeCCC-C----------eeEEeccCCccccCeEEEEEccCCCEEEEEECC-CcE
Q psy15995 273 RFVQAVRYSPSGSHFASAGFDGKVFLYDGAS-A----------DLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD-KTC 340 (683)
Q Consensus 273 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~----------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i 340 (683)
..|..++... ...+.-..+|.|+.|=... + .....+.. .....|..++... .+.+....+ +.|
T Consensus 16 ~~v~~ia~G~--~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~-l~~~~i~~va~G~--~ht~al~~~gg~v 90 (406)
T 4d9s_A 16 RKVLIISAGA--SHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSA-LDGHQIVSVTCGA--DHTVAYSQSGMEV 90 (406)
T ss_dssp CCEEEEEECS--SEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGG-GTTSCEEEEEECS--SEEEEEETTTTEE
T ss_pred cceEEEecCC--CeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecc-cCCCCEEEEEeCc--ceEEEEECCCCEE
Confidence 3455554433 3444455678888884322 1 11111111 1233577776653 334444455 488
Q ss_pred EEEECCCC------ce---eeEEEecCcceeceEEEEecCCEEEEEecCCcEEEEecCCCCcc-------e---eeeee-
Q psy15995 341 KLWDIETK------SV---VSEFIMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTP-------I---RVIKG- 400 (683)
Q Consensus 341 ~iwd~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~-------~---~~~~~- 400 (683)
..|-.... .. ................+.....+.++...+|.++.|-.....+. . ..+..
T Consensus 91 ~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~ 170 (406)
T 4d9s_A 91 YSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF 170 (406)
T ss_dssp EEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGG
T ss_pred EEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEeccc
Confidence 88854321 11 11111111111123444456677788889999999976542211 0 00111
Q ss_pred ccccEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCCcc-----------eeccCCCCcceeEEEEeCCeEEEEEcCCeEEE
Q psy15995 401 HNKPITALALSPDRGTVFTGSHDGFITRWNAKTGEND-----------RVQGAGHGNQINGMKATGELLYTCGIDDTIKQ 469 (683)
Q Consensus 401 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~ 469 (683)
....|..++.. ..+.+.-..+|.|..|-....... ..........+..++......+....+|.+..
T Consensus 171 ~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~ 248 (406)
T 4d9s_A 171 EGIRIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYT 248 (406)
T ss_dssp TTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEE
T ss_pred CCCcEEEEecC--CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEE
Confidence 12246655543 345555668899999954322110 11111123456667666777788889999999
Q ss_pred EeCCCCc
Q psy15995 470 VDLSSNA 476 (683)
Q Consensus 470 ~~~~~~~ 476 (683)
|-.....
T Consensus 249 wG~n~~G 255 (406)
T 4d9s_A 249 YGWSKYG 255 (406)
T ss_dssp EECCTTS
T ss_pred eeCCCCC
Confidence 9866543
No 390
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=28.48 E-value=4.6e+02 Score=26.19 Aligned_cols=34 Identities=15% Similarity=-0.017 Sum_probs=23.2
Q ss_pred ecceeeeEeec-cceEEEeecCCccEEEEecccccee
Q psy15995 141 LTSIRNILVLS-IGFYIASGDISGKVRIWDTVNKEHI 176 (683)
Q Consensus 141 ~~~i~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~ 176 (683)
..-++++.+.+ ++.+|+++-.- .|...|. +++..
T Consensus 354 w~HiNsv~~d~~dd~~liSsR~~-~I~~Id~-tG~V~ 388 (571)
T 3elq_A 354 WAHVNSIAYDAKDDSIILSSRHQ-GVVKIGR-DKQVK 388 (571)
T ss_dssp SCCEEEEEEETTTTEEEEEETTT-EEEEEET-TSCEE
T ss_pred CcEecceeEcCCCCEEEEECCcc-EEEEEcC-CCcEE
Confidence 34578888887 56788888777 6655564 55543
No 391
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=26.87 E-value=1.9e+02 Score=21.13 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=15.0
Q ss_pred eEEEECCCCCEEEEEeCCCeEEEEECCC
Q psy15995 568 TDCSFSPSNEYLVASDAHRKVVLYRVPD 595 (683)
Q Consensus 568 ~~~~~s~~~~~l~~~~~d~~i~i~~~~~ 595 (683)
..+.+..+|.+++... ++.+ +|.-.+
T Consensus 59 ~~l~l~~dGNLVl~d~-~~~~-iW~S~t 84 (113)
T 3mez_B 59 CFMRLGHSGELDITDD-RLNT-VFVSNT 84 (113)
T ss_dssp CEEEECTTSCEEEECT-TSCE-EEECSC
T ss_pred EEEEEeCCCcEEEECC-CCCE-EEECCC
Confidence 4567777777766533 3433 676543
No 392
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=26.85 E-value=1.8e+02 Score=20.90 Aligned_cols=41 Identities=7% Similarity=0.022 Sum_probs=23.0
Q ss_pred ceeecCCCcccCCCeEEEeeCCCCCeEEEecCCeEEEEeCCC
Q psy15995 33 KYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN 74 (683)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~i~v~~~~~ 74 (683)
..++.+-...+......+.+..||.++.+-.++. .||...+
T Consensus 38 ~~vW~ant~~~~~~~~~L~l~~dGnLvL~d~~~~-~vWss~t 78 (105)
T 4h3o_A 38 TSTWASNTEIGGKSGCSAVLQSDGNFVVYDSSGR-SLWASHS 78 (105)
T ss_dssp EEEEECCCCCTTCCSCEEEECTTSCEEEECTTCC-EEEECCC
T ss_pred EEEEEecCCCCCCccEEEEEeCCccEEEECCCcE-EEEEecC
Confidence 3455554443333344566788888777765544 3676443
No 393
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A*
Probab=20.48 E-value=2.5e+02 Score=20.42 Aligned_cols=26 Identities=15% Similarity=0.107 Sum_probs=15.1
Q ss_pred EEEeeCCCCCeEEEecCCeEEEEeCCC
Q psy15995 48 IVLGGDPKGKNFLYTNGNSVIIRNIEN 74 (683)
Q Consensus 48 ~~~~~s~~~~~l~~~~~~~i~v~~~~~ 74 (683)
..+.+..+|.++++-.++. .+|...+
T Consensus 53 ~~l~l~~~GnLvl~d~~~~-~vW~S~~ 78 (115)
T 2dpf_A 53 CRLTLLSDGNLVIYDHNNN-DVWGSAC 78 (115)
T ss_dssp CEEEECTTSCEEEECTTCC-EEEECCC
T ss_pred eEEEECCCCcEEEECCCce-EEEEcCC
Confidence 4455677777777654433 4675433
Done!