BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16
(87 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F7L|A Chain A, Crystal Structure Of Sulfolobus Tokodaii
PhosphomannomutasePHOSPHOGLUCOMUTASE
pdb|2F7L|B Chain B, Crystal Structure Of Sulfolobus Tokodaii
PhosphomannomutasePHOSPHOGLUCOMUTASE
Length = 455
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 20 WMGTKTYDLEQE--GKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDL 77
W + D+ + ++ L FEE GFM H +DG + M EL+A + +L
Sbjct: 304 WTKVGSVDIAHKVADENALAGFEENGGFMYPPHQYVRDGAMSFALMLELLANENVSSAEL 363
Query: 78 HQLLADVY 85
L Y
Sbjct: 364 FDRLPKYY 371
>pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From
Stenotrophomonas Maltophilia
Length = 741
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 26 YDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLAD 83
YDL+QEGK + GF + K G + +R L + G+ + QL AD
Sbjct: 134 YDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQM-QLTAD 190
>pdb|1NSM|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant D243a Complexed With
Galactose
pdb|1NSM|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant D243a Complexed With
Galactose
pdb|1NSS|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant D243a Complexed With Glucose
pdb|1NSS|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant D243a Complexed With Glucose
Length = 347
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 18 FKWMGTKTYDLEQEGKHVLLAFEEAIGFMD 47
F +G + D +++GKH++L F+ A +++
Sbjct: 27 FTNLGARIVDWQKDGKHLILGFDSAKEYLE 56
>pdb|1NS8|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant D243n Complexed With
Galactose
pdb|1NS8|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant D243n Complexed With
Galactose
pdb|1NSR|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant D243n Complexed With Glucose
pdb|1NSR|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant D243n Complexed With Glucose
Length = 347
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 18 FKWMGTKTYDLEQEGKHVLLAFEEAIGFMD 47
F +G + D +++GKH++L F+ A +++
Sbjct: 27 FTNLGARIVDWQKDGKHLILGFDSAKEYLE 56
>pdb|1NS2|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant E304a Complexed With
Galactose
pdb|1NS2|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant E304a Complexed With
Galactose
pdb|1NS7|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant E304a Complexed With Glucose
pdb|1NS7|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant E304a Complexed With Glucose
Length = 347
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 18 FKWMGTKTYDLEQEGKHVLLAFEEAIGFMD 47
F +G + D +++GKH++L F+ A +++
Sbjct: 27 FTNLGARIVDWQKDGKHLILGFDSAKEYLE 56
>pdb|1NSU|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant H96n Complexed With Galactose
pdb|1NSU|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant H96n Complexed With Galactose
pdb|1NSV|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant H96n Complexed With Glucose
pdb|1NSV|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant H96n Complexed With Glucose
Length = 347
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 18 FKWMGTKTYDLEQEGKHVLLAFEEAIGFMD 47
F +G + D +++GKH++L F+ A +++
Sbjct: 27 FTNLGARIVDWQKDGKHLILGFDSAKEYLE 56
>pdb|1NSX|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant H170n Complexed With
Galactose
pdb|1NSX|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant H170n Complexed With
Galactose
pdb|1NSZ|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant H170n Complexed With Glucose
pdb|1NSZ|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant H170n Complexed With Glucose
Length = 347
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 18 FKWMGTKTYDLEQEGKHVLLAFEEAIGFMD 47
F +G + D +++GKH++L F+ A +++
Sbjct: 27 FTNLGARIVDWQKDGKHLILGFDSAKEYLE 56
>pdb|1NS0|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant E304q Complexed With
Galactose
pdb|1NS0|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant E304q Complexed With
Galactose
pdb|1NS4|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant E304q Complexed With Glucose
pdb|1NS4|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant E304q Complexed With Glucose
Length = 347
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 18 FKWMGTKTYDLEQEGKHVLLAFEEAIGFMD 47
F +G + D +++GKH++L F+ A +++
Sbjct: 27 FTNLGARIVDWQKDGKHLILGFDSAKEYLE 56
>pdb|1L7J|A Chain A, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis (Apo)
pdb|1L7J|B Chain B, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis (Apo)
pdb|1L7K|A Chain A, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With Galactose
pdb|1L7K|B Chain B, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With Galactose
pdb|1MMU|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Complexed With D-Glucose
pdb|1MMU|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Complexed With D-Glucose
pdb|1MMX|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Complexed With D-Fucose
pdb|1MMX|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Complexed With D-Fucose
pdb|1MMY|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Complexed With D-Quinovose
pdb|1MMY|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Complexed With D-Quinovose
pdb|1MMZ|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Complexed With L-Arabinose
pdb|1MMZ|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Complexed With L-Arabinose
pdb|1MN0|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Complexed With D-xylose
pdb|1MN0|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Complexed With D-xylose
Length = 347
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 18 FKWMGTKTYDLEQEGKHVLLAFEEAIGFMD 47
F +G + D +++GKH++L F+ A +++
Sbjct: 27 FTNLGARIVDWQKDGKHLILGFDSAKEYLE 56
>pdb|3LPO|A Chain A, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|B Chain B, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|C Chain C, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|D Chain D, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPP|A Chain A, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|B Chain B, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|C Chain C, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|D Chain D, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
Length = 898
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 18 FKWMGTKTYDLEQEGKHVLLAFEEAIGFMD--GTHVLDKDGVTAAVRMAELVAYLDS 72
F W +T D Q G ++L F + +D TH ++G T A + +++ DS
Sbjct: 797 FFWDDGETKDTIQNGNYILYTFSVSNNTLDIVCTHSSYQEGTTLAFQTVKILGLTDS 853
>pdb|2P0Y|A Chain A, Crystal Structure Of Q88yi3_lacpl From Lactobacillus
Plantarum. Northeast Structural Genomics Consortium
Target Lpr6
Length = 341
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 34 HVLLAFEEAI----GFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKD 76
HV A EA+ F DGT ++ + +TAA + E V D GK+
Sbjct: 129 HVYPAANEALTLHGKFSDGTELVGEAEITAAHKSLERVWVTDKNGKE 175
>pdb|2A2O|A Chain A, Crystal Structure Of A Putativetena Family Transcriptional
Regulator (Bt_3146) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.16 A Resolution
pdb|2A2O|B Chain B, Crystal Structure Of A Putativetena Family Transcriptional
Regulator (Bt_3146) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.16 A Resolution
pdb|2A2O|C Chain C, Crystal Structure Of A Putativetena Family Transcriptional
Regulator (Bt_3146) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.16 A Resolution
pdb|2A2O|D Chain D, Crystal Structure Of A Putativetena Family Transcriptional
Regulator (Bt_3146) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.16 A Resolution
pdb|2A2O|E Chain E, Crystal Structure Of A Putativetena Family Transcriptional
Regulator (Bt_3146) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.16 A Resolution
pdb|2A2O|F Chain F, Crystal Structure Of A Putativetena Family Transcriptional
Regulator (Bt_3146) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.16 A Resolution
pdb|2A2O|G Chain G, Crystal Structure Of A Putativetena Family Transcriptional
Regulator (Bt_3146) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.16 A Resolution
pdb|2A2M|A Chain A, Crystal Structure Of A Putativetena Family Transcriptional
Regulator (Bt_3146) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.88 A Resolution
pdb|2A2M|B Chain B, Crystal Structure Of A Putativetena Family Transcriptional
Regulator (Bt_3146) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.88 A Resolution
Length = 258
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 13 ETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLD 53
ETL F K+YD E H EA G + GT + D
Sbjct: 112 ETLREFFKAKAKSYDEYNETYHQTWHLREASGLIPGTDIKD 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,821,184
Number of Sequences: 62578
Number of extensions: 104051
Number of successful extensions: 298
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 288
Number of HSP's gapped (non-prelim): 12
length of query: 87
length of database: 14,973,337
effective HSP length: 55
effective length of query: 32
effective length of database: 11,531,547
effective search space: 369009504
effective search space used: 369009504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)