Query psy16
Match_columns 87
No_of_seqs 100 out of 1050
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 18:20:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02880 PGM_PMM_III: Phosphog 99.9 1.5E-25 3.2E-30 141.3 6.9 77 3-87 36-112 (113)
2 PTZ00150 phosphoglucomutase-2- 99.9 1.3E-22 2.7E-27 156.6 8.9 85 3-87 364-449 (584)
3 PLN02307 phosphoglucomutase 99.9 1.6E-21 3.5E-26 150.6 7.6 79 3-87 357-441 (579)
4 KOG1220|consensus 99.8 7E-21 1.5E-25 145.7 7.7 86 2-87 380-466 (607)
5 cd03085 PGM1 Phosphoglucomutas 99.8 6.6E-20 1.4E-24 140.9 7.1 75 3-86 333-407 (548)
6 cd05799 PGM2 This CD includes 99.8 2.5E-19 5.4E-24 135.4 9.1 84 3-86 322-405 (487)
7 cd05801 PGM_like3 This bacteri 99.8 2.8E-19 6E-24 136.6 7.5 76 3-86 341-421 (522)
8 cd03089 PMM_PGM The phosphoman 99.8 2.9E-19 6.3E-24 133.7 7.5 76 3-86 284-360 (443)
9 PRK15414 phosphomannomutase Cp 99.8 4.7E-19 1E-23 133.3 8.2 76 3-86 296-371 (456)
10 PRK07564 phosphoglucomutase; V 99.8 6.2E-19 1.4E-23 135.2 7.4 76 3-86 356-436 (543)
11 TIGR01132 pgm phosphoglucomuta 99.8 8.6E-19 1.9E-23 134.4 7.6 76 3-86 357-437 (543)
12 cd05803 PGM_like4 This PGM-lik 99.8 2.1E-18 4.5E-23 129.3 7.8 76 3-86 293-368 (445)
13 cd05805 MPG1_transferase GTP-m 99.8 2E-18 4.3E-23 129.1 6.8 75 3-86 287-361 (441)
14 PRK14324 glmM phosphoglucosami 99.7 3.8E-18 8.3E-23 128.1 8.1 74 3-84 295-368 (446)
15 cd03084 phosphohexomutase The 99.7 4.8E-18 1E-22 124.0 8.1 76 3-86 234-309 (355)
16 KOG0625|consensus 99.7 2.6E-18 5.7E-23 128.4 5.2 77 2-87 339-416 (558)
17 PRK09542 manB phosphomannomuta 99.7 8.6E-18 1.9E-22 126.1 7.6 73 3-83 285-357 (445)
18 cd05800 PGM_like2 This PGM-lik 99.7 1.2E-17 2.6E-22 125.5 8.1 76 3-86 294-369 (461)
19 PRK14317 glmM phosphoglucosami 99.7 1.2E-17 2.6E-22 126.0 7.7 76 3-86 308-383 (465)
20 PRK14315 glmM phosphoglucosami 99.7 1E-17 2.2E-22 125.7 7.1 74 3-84 296-369 (448)
21 TIGR01455 glmM phosphoglucosam 99.7 1.4E-17 3E-22 124.8 7.7 74 3-84 292-365 (443)
22 PRK10887 glmM phosphoglucosami 99.7 2.1E-17 4.6E-22 123.9 7.3 74 3-84 290-363 (443)
23 PRK14323 glmM phosphoglucosami 99.7 3.1E-17 6.6E-22 122.8 8.0 74 3-84 287-360 (440)
24 cd03087 PGM_like1 This archaea 99.7 2.8E-17 6.1E-22 122.8 7.5 73 3-84 283-355 (439)
25 PRK14321 glmM phosphoglucosami 99.7 2.7E-17 5.8E-22 123.6 7.4 74 3-85 284-357 (449)
26 COG1109 {ManB} Phosphomannomut 99.7 2.9E-17 6.3E-22 124.0 7.5 73 3-83 298-370 (464)
27 PRK14314 glmM phosphoglucosami 99.7 4.5E-17 9.8E-22 122.3 8.0 73 3-83 297-369 (450)
28 PRK14316 glmM phosphoglucosami 99.7 6.8E-17 1.5E-21 121.1 7.7 74 3-84 293-366 (448)
29 cd05802 GlmM GlmM is a bacteri 99.7 7.7E-17 1.7E-21 120.4 7.8 74 3-84 289-362 (434)
30 PRK14322 glmM phosphoglucosami 99.7 6.4E-17 1.4E-21 120.9 7.3 74 3-84 283-356 (429)
31 PRK14318 glmM phosphoglucosami 99.7 1.4E-16 2.9E-21 119.7 8.0 74 3-84 295-368 (448)
32 PRK14319 glmM phosphoglucosami 99.7 1.2E-16 2.7E-21 119.4 7.4 74 3-84 280-353 (430)
33 cd03088 ManB ManB is a bacteri 99.7 2.4E-16 5.3E-21 118.7 8.9 76 8-86 283-368 (459)
34 PRK14320 glmM phosphoglucosami 99.7 2E-16 4.4E-21 118.6 7.2 72 3-82 290-361 (443)
35 PLN02371 phosphoglucosamine mu 99.6 2.7E-15 6E-20 116.1 8.8 83 3-85 385-469 (583)
36 cd03086 PGM3 PGM3 (phosphogluc 99.4 2.6E-13 5.7E-18 104.0 7.4 69 7-83 329-429 (513)
37 COG0033 Pgm Phosphoglucomutase 99.4 3.8E-14 8.3E-19 106.8 0.9 75 2-84 334-413 (524)
38 PTZ00302 N-acetylglucosamine-p 99.1 5.9E-10 1.3E-14 86.9 7.6 71 5-83 389-493 (585)
39 PLN02895 phosphoacetylglucosam 99.0 8.1E-10 1.7E-14 85.8 7.0 72 4-83 357-467 (562)
40 PF01368 DHH: DHH family; Int 59.5 16 0.00035 22.6 3.4 23 48-70 12-34 (145)
41 COG0140 HisI Phosphoribosyl-AT 52.2 12 0.00027 22.9 1.8 48 39-86 37-86 (92)
42 TIGR00644 recJ single-stranded 42.3 76 0.0016 24.9 5.2 17 53-69 64-80 (539)
43 PF04099 Sybindin: Sybindin-li 35.2 11 0.00024 24.4 -0.3 18 5-22 73-90 (142)
44 PF10405 BHD_3: Rad4 beta-hair 35.1 11 0.00024 22.2 -0.3 19 2-20 31-49 (76)
45 cd07977 TFIIE_beta_winged_heli 33.9 72 0.0016 18.5 3.1 24 61-84 9-35 (75)
46 KOG1017|consensus 33.3 15 0.00032 26.1 0.1 15 10-24 118-132 (267)
47 COG4321 Uncharacterized protei 29.9 89 0.0019 19.5 3.1 20 65-87 41-60 (102)
48 TIGR01999 iscU FeS cluster ass 29.4 96 0.0021 19.4 3.4 21 57-82 65-85 (124)
49 PF00975 Thioesterase: Thioest 28.6 1.6E+02 0.0035 19.2 4.6 18 59-76 76-93 (229)
50 PF06799 DUF1230: Protein of u 28.1 32 0.00069 22.8 1.0 40 15-62 84-129 (144)
51 PRK11325 scaffold protein; Pro 27.5 1.1E+02 0.0023 19.3 3.4 28 54-82 60-87 (127)
52 PF03569 Peptidase_C8: Peptida 27.1 68 0.0015 22.2 2.5 51 13-64 124-184 (212)
53 COG0822 IscU NifU homolog invo 27.0 1.1E+02 0.0024 20.1 3.4 23 57-84 68-90 (150)
54 TIGR03419 NifU_clost FeS clust 26.2 1.2E+02 0.0027 18.9 3.4 20 59-83 63-82 (121)
55 COG0608 RecJ Single-stranded D 26.1 55 0.0012 25.2 2.1 20 51-70 44-63 (491)
56 PF10415 FumaraseC_C: Fumarase 25.2 1.3E+02 0.0027 16.4 3.2 23 58-83 12-34 (55)
57 TIGR03188 histidine_hisI phosp 23.7 49 0.0011 19.8 1.2 46 39-84 37-84 (84)
58 PF01548 DEDD_Tnp_IS110: Trans 23.7 56 0.0012 20.3 1.5 36 9-48 26-61 (144)
59 TIGR01994 SUF_scaf_2 SUF syste 23.6 1.4E+02 0.0031 19.0 3.5 21 58-83 66-86 (137)
60 PF00731 AIRC: AIR carboxylase 22.9 79 0.0017 20.9 2.1 28 55-85 116-143 (150)
61 KOG2873|consensus 22.4 28 0.00061 25.5 -0.1 38 24-69 196-233 (284)
62 PRK02759 bifunctional phosphor 21.5 79 0.0017 22.1 2.0 48 40-87 153-202 (203)
63 PF02186 TFIIE_beta: TFIIE bet 21.4 1.5E+02 0.0033 16.7 2.9 23 62-84 6-30 (65)
64 PF13693 HTH_35: Winged helix- 21.3 1.3E+02 0.0029 17.7 2.7 20 64-83 5-24 (78)
65 PF11044 TMEMspv1-c74-12: Plec 21.3 1E+02 0.0022 16.5 2.0 27 56-85 7-33 (49)
66 TIGR03446 mycothiol_Mca mycoth 21.0 1.1E+02 0.0025 22.1 2.8 30 32-61 121-150 (283)
67 PF01296 Galanin: Galanin; In 20.9 57 0.0012 15.7 0.8 11 42-52 6-16 (29)
68 PF05402 PqqD: Coenzyme PQQ sy 20.8 1.4E+02 0.0031 16.0 2.7 23 59-85 18-40 (68)
69 COG2845 Uncharacterized protei 20.8 42 0.00092 25.3 0.6 44 3-58 256-300 (354)
70 PRK00400 hisE phosphoribosyl-A 20.6 2.3E+02 0.0049 17.6 3.9 48 40-87 42-91 (105)
71 cd06664 IscU_like Iron-sulfur 20.6 2.1E+02 0.0045 17.5 3.7 30 53-83 54-83 (123)
72 PRK13983 diaminopimelate amino 20.5 1.2E+02 0.0025 22.0 2.8 16 54-69 119-134 (400)
73 cd00959 DeoC 2-deoxyribose-5-p 20.4 1.1E+02 0.0024 20.6 2.5 28 2-29 138-171 (203)
74 PF12637 TSCPD: TSCPD domain; 20.1 2.1E+02 0.0046 17.1 3.8 28 55-85 37-65 (95)
75 PF02852 Pyr_redox_dim: Pyridi 20.1 1.2E+02 0.0025 18.1 2.4 76 4-84 21-96 (110)
No 1
>PF02880 PGM_PMM_III: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; InterPro: IPR005846 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain III found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B 3UW2_A 2F7L_B 3I3W_B 2Z0F_A ....
Probab=99.92 E-value=1.5e-25 Score=141.32 Aligned_cols=77 Identities=31% Similarity=0.404 Sum_probs=71.3
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+|+++|+++.+||||||||.+.|++ .+++||||||+|++|+++.++|||++++++++++++. +|+||+++++
T Consensus 36 ~~~~~g~~~~~t~vG~~~i~~~~~~-----~~~~~ggE~sgg~~~~~~~~~~Dgi~a~~~~l~~l~~---~~~~ls~ll~ 107 (113)
T PF02880_consen 36 IAEKHGGKVIRTKVGFKNIAEKMRE-----ENAVFGGEESGGFIFPDFSYDKDGIYAALLLLELLAE---EGKTLSELLD 107 (113)
T ss_dssp HHHHTTSEEEEESSSHHHHHHHHHH-----TTESEEEETTSEEEETTTESSE-HHHHHHHHHHHHHH---HTS-HHHHHH
T ss_pred HHHHCCCEEEEecCCcHHHHHHHhh-----hceeEEecccCeEEecCCCCCCcHHHHHHHHHHHHHH---hCCCHHHHHH
Confidence 6789999999999999999999998 5799999999999999999999999999999999998 8999999999
Q ss_pred HHHhC
Q psy16 83 DVYDK 87 (87)
Q Consensus 83 ~i~~~ 87 (87)
+++++
T Consensus 108 ~l~~~ 112 (113)
T PF02880_consen 108 ELPKK 112 (113)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 99874
No 2
>PTZ00150 phosphoglucomutase-2-like protein; Provisional
Probab=99.88 E-value=1.3e-22 Score=156.62 Aligned_cols=85 Identities=48% Similarity=0.737 Sum_probs=78.1
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCC-eeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGK-HVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLL 81 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~-~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l 81 (87)
+|+++|+++++||||||||+++|.++.+.+. +++||||||+||++++|++||||++|+++++|++++++.+|+||++++
T Consensus 364 ia~~~g~~v~~t~tGfk~I~~~m~~~~~~~~~~~~~ggEeSgG~~~~~~~~~kDgi~aal~ile~~~~l~~~g~sL~e~l 443 (584)
T PTZ00150 364 MAEKEGFQYDETLTGFKWIGNKAIELNAENGLTTLFAYEEAIGFMLGTRVRDKDGVTAAAVVAEMALYLYERGKTLVEHL 443 (584)
T ss_pred HHHHcCCEEEECCCChHHHHHHHHHHHhcCCceEEEEEeccCcccCCCCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 6789999999999999999999987655443 599999999999999999999999999999999988888999999999
Q ss_pred HHHHhC
Q psy16 82 ADVYDK 87 (87)
Q Consensus 82 ~~i~~~ 87 (87)
++||++
T Consensus 444 ~~l~~~ 449 (584)
T PTZ00150 444 ESLYKQ 449 (584)
T ss_pred HHHHHH
Confidence 999974
No 3
>PLN02307 phosphoglucomutase
Probab=99.85 E-value=1.6e-21 Score=150.65 Aligned_cols=79 Identities=24% Similarity=0.379 Sum_probs=72.0
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhC----CC--C
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQ----GK--D 76 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~----~~--~ 76 (87)
+|+++|+++++||||||||+++|.+ .+++||||||+|++ ++|++||||++++++++|++++.+.+ |+ |
T Consensus 357 ia~~~G~~~~~t~vGfk~I~~~m~e-----~~~~~GgEeSgG~~-~~~~~dkDGi~aallllel~a~~~~~~~~~~~~~t 430 (579)
T PLN02307 357 VAKKLNLPFFEVPTGWKFFGNLMDA-----GKLSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKDVLPGGKLVT 430 (579)
T ss_pred HHHHcCCeEEEcCchHHHHHHHHHh-----CCcEEEEcccCCCC-CCCCCCCcHHHHHHHHHHHHHHhCCCcccccCcCC
Confidence 6889999999999999999999987 46999999999996 99999999999999999999997655 54 8
Q ss_pred HHHHHHHHHhC
Q psy16 77 LHQLLADVYDK 87 (87)
Q Consensus 77 l~~~l~~i~~~ 87 (87)
|.++|++||++
T Consensus 431 l~~~l~el~~~ 441 (579)
T PLN02307 431 VEDIVREHWAT 441 (579)
T ss_pred HHHHHHHHHHH
Confidence 99999999974
No 4
>KOG1220|consensus
Probab=99.84 E-value=7e-21 Score=145.71 Aligned_cols=86 Identities=43% Similarity=0.762 Sum_probs=81.1
Q ss_pred cccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHh-hCCCCHHHH
Q psy16 2 MVDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLD-SQGKDLHQL 80 (87)
Q Consensus 2 ~v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~-~~~~~l~~~ 80 (87)
.+|+..|++..+|+|||||++++..+++++|+.+.||+|||+||+++.++.||||+.+++.+++++++++ ..+.||.+.
T Consensus 380 ~ia~~eGf~~~~tltGFKwvgnrAieL~k~G~~v~fA~Ees~gym~g~~~~dkDGv~a~v~~a~~~~~lr~~~~~sl~e~ 459 (607)
T KOG1220|consen 380 FIAEIEGFHHEETLTGFKWVGNRAIELEKDGKEVHFAFEESIGYMFGENHLDKDGVSAAVKFASMACRLRLAGNLSLSEV 459 (607)
T ss_pred HHHHHhCceeeeccccchhhhHHHHHHHhcCceeeeeehhhcCcccccCccCcchHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 3688999999999999999999999999999889999999999999999999999999999999999997 467899999
Q ss_pred HHHHHhC
Q psy16 81 LADVYDK 87 (87)
Q Consensus 81 l~~i~~~ 87 (87)
|.++|++
T Consensus 460 l~~l~e~ 466 (607)
T KOG1220|consen 460 LEDLYER 466 (607)
T ss_pred HHHHHHh
Confidence 9999974
No 5
>cd03085 PGM1 Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes. In one direction, G-1-P produced from sucrose catabolism is converted to G-6-P, the first intermediate in glycolysis. In the other direction, conversion of G-6-P to G-1-P generates a substrate for synthesis of UDP-glucose which is required for synthesis of a variety of cellular constituents including cell wall polymers and glycoproteins. The PGM1 family also includes a non-enzymatic PGM-related protein (PGM-RP) thought to play a structural role in eukaryotes, as well as pp63/parafusin, a phosphoglycoprotein that plays an important role in calcium-regulated exocytosis in ciliated protozoans. PGM1 belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl t
Probab=99.80 E-value=6.6e-20 Score=140.95 Aligned_cols=75 Identities=23% Similarity=0.347 Sum_probs=70.7
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+|+++|+++++|+||||||++.|++ .+++||+|||+|++ ++|+++|||++|+++++|++++ +|+||+++++
T Consensus 333 ia~~~G~~v~~t~vG~k~I~~~m~~-----~~~~~GgEeSgg~~-~~~~~~kDGi~aal~llella~---~g~tLsell~ 403 (548)
T cd03085 333 VAKKLGIPLFETPTGWKFFGNLMDA-----GKLSLCGEESFGTG-SDHIREKDGLWAVLAWLSILAH---RNVSVEDIVK 403 (548)
T ss_pred HHHHcCCcEEEcCchHHHHHHHHhc-----CCceEEEeccCCcc-CCCccCCcHHHHHHHHHHHHHH---HCcCHHHHHH
Confidence 6789999999999999999999986 46899999999997 9999999999999999999998 8999999999
Q ss_pred HHHh
Q psy16 83 DVYD 86 (87)
Q Consensus 83 ~i~~ 86 (87)
+||+
T Consensus 404 ~i~~ 407 (548)
T cd03085 404 EHWQ 407 (548)
T ss_pred HHHH
Confidence 9985
No 6
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/ph
Probab=99.80 E-value=2.5e-19 Score=135.36 Aligned_cols=84 Identities=46% Similarity=0.790 Sum_probs=77.3
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+|+++|+++.+|+||||||.+.|.+..+.+.+++||+|||+|++|++|.+++||++++++++|+++.++.++++|+++++
T Consensus 322 ia~~~g~~v~~t~~G~~~i~~~m~~~~~~~~~~~~ggE~sgg~~~~~~~~~~Dgi~a~~~lle~la~~~~~~~~Ls~l~~ 401 (487)
T cd05799 322 IAKKYGVKVEETLTGFKWIGNKIEELESGGKKFLFGFEESIGYLVGPFVRDKDGISAAALLAEMAAYLKAQGKTLLDRLD 401 (487)
T ss_pred HHHHcCCeEEECCCCchHHHHHHHHHhccCceEEEEEeccceeeeCCCCCCchHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 57899999999999999999999876544457999999999999999999999999999999999988778999999999
Q ss_pred HHHh
Q psy16 83 DVYD 86 (87)
Q Consensus 83 ~i~~ 86 (87)
++++
T Consensus 402 ~l~~ 405 (487)
T cd05799 402 ELYE 405 (487)
T ss_pred HHHH
Confidence 9875
No 7
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.79 E-value=2.8e-19 Score=136.57 Aligned_cols=76 Identities=29% Similarity=0.344 Sum_probs=70.8
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecC-----CccCchHHHHHHHHHHHHHHHhhCCCCH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGT-----HVLDKDGVTAAVRMAELVAYLDSQGKDL 77 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~-----~~~dkDGi~aa~l~~e~~~~~~~~~~~l 77 (87)
+|+++|+++++|+||||||++.|.+ .+++||+|||+|++|++ |.++|||++++++++|+++. +|++|
T Consensus 341 ia~~~g~~~~~t~vG~k~i~~~m~~-----~~~~~ggEeSgg~~~~~~~~~~~~~~~Dgi~a~l~~le~la~---~~~~L 412 (522)
T cd05801 341 VAAALGRKLYEVPVGFKWFVDGLLD-----GSLGFGGEESAGASFLRRDGTVWTTDKDGIIMCLLAAEILAV---TGKDP 412 (522)
T ss_pred HHHHcCCeeeecCccHHHHHHHHhc-----CCeEEEEeccCceEeccCCCCCcccCchHHHHHHHHHHHHHH---hCCCH
Confidence 6789999999999999999999986 46899999999999977 89999999999999999997 89999
Q ss_pred HHHHHHHHh
Q psy16 78 HQLLADVYD 86 (87)
Q Consensus 78 ~~~l~~i~~ 86 (87)
+++++++++
T Consensus 413 ~~~l~~l~~ 421 (522)
T cd05801 413 GQLYQELTE 421 (522)
T ss_pred HHHHHHHHH
Confidence 999999863
No 8
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=99.79 E-value=2.9e-19 Score=133.71 Aligned_cols=76 Identities=28% Similarity=0.191 Sum_probs=71.4
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecC-CccCchHHHHHHHHHHHHHHHhhCCCCHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGT-HVLDKDGVTAAVRMAELVAYLDSQGKDLHQLL 81 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~-~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l 81 (87)
+|+++|+++++|+||||||.+.|.+ .+++||+|||+|+++++ |.++|||++++++++|+++. +|++|++++
T Consensus 284 ia~~~g~~v~~t~vG~k~v~~~m~~-----~~~~~ggE~sgg~~~~~~~~~~~Dgi~a~l~ile~la~---~~~~Lsel~ 355 (443)
T cd03089 284 FIEEAGGKPIMWKTGHSFIKAKMKE-----TGALLAGEMSGHIFFKDRWYGFDDGIYAALRLLELLSK---SGKTLSELL 355 (443)
T ss_pred HHHHcCCeEEEecCcHHHHHHHHHH-----hCCcEEEeccceEEEcCCcCCCccHHHHHHHHHHHHHh---cCCCHHHHH
Confidence 6788999999999999999999987 57999999999999999 99999999999999999998 899999999
Q ss_pred HHHHh
Q psy16 82 ADVYD 86 (87)
Q Consensus 82 ~~i~~ 86 (87)
+++++
T Consensus 356 ~~~p~ 360 (443)
T cd03089 356 ADLPK 360 (443)
T ss_pred Hhccc
Confidence 98653
No 9
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=99.78 E-value=4.7e-19 Score=133.35 Aligned_cols=76 Identities=18% Similarity=0.154 Sum_probs=71.4
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+++++|+++++|+||||||.++|.+ .+++||||||+|++|++|.+++||++++++++|+++. +|++|+++++
T Consensus 296 ~~~~~g~~~~~t~vG~~~i~~~m~~-----~~~~~ggE~sgg~~~~~~~~~~Dgi~a~~~ile~la~---~~~~L~~l~~ 367 (456)
T PRK15414 296 VVTAAGGTPVMSKTGHAFIKERMRK-----EDAIYGGEMSAHHYFRDFAYCDSGMIPWLLVAELVCL---KGKTLGELVR 367 (456)
T ss_pred HHHHcCCEEEEecCcHHHHHHHHHh-----cCCeEEEcccceEEeCCCCCCccHHHHHHHHHHHHHc---cCCCHHHHHH
Confidence 5788999999999999999999987 4699999999999999999999999999999999997 8999999999
Q ss_pred HHHh
Q psy16 83 DVYD 86 (87)
Q Consensus 83 ~i~~ 86 (87)
++|+
T Consensus 368 ~~~~ 371 (456)
T PRK15414 368 DRMA 371 (456)
T ss_pred HHHH
Confidence 8775
No 10
>PRK07564 phosphoglucomutase; Validated
Probab=99.77 E-value=6.2e-19 Score=135.21 Aligned_cols=76 Identities=26% Similarity=0.328 Sum_probs=70.1
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeec-----CCccCchHHHHHHHHHHHHHHHhhCCCCH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDG-----THVLDKDGVTAAVRMAELVAYLDSQGKDL 77 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~-----~~~~dkDGi~aa~l~~e~~~~~~~~~~~l 77 (87)
+|+++|+++++|+||||||++.|.+ .+++||+|||+|++|. .|+++|||++|+++++|+++. ++++|
T Consensus 356 ia~~~g~~v~~t~vG~k~i~~~m~~-----~~~~~ggEeSgg~~~~~~~~~~~~~~~Dgi~a~l~ile~la~---~~~~L 427 (543)
T PRK07564 356 VAAKLGRKLYEVPVGFKWFVNGLDD-----GSLGFGGEESAGASFLRRDGSVWTTDKDGLIAVLLAAEILAV---TGKSP 427 (543)
T ss_pred HHHHhCCeeeecchHHHHHHHHHhc-----CceEEEecCcCCeeecccCCCCccccchHHHHHHHHHHHHHH---hCCCH
Confidence 6889999999999999999999986 4699999999999773 389999999999999999997 89999
Q ss_pred HHHHHHHHh
Q psy16 78 HQLLADVYD 86 (87)
Q Consensus 78 ~~~l~~i~~ 86 (87)
+++++++++
T Consensus 428 ~ell~~l~~ 436 (543)
T PRK07564 428 SEIYRELWA 436 (543)
T ss_pred HHHHHHHHH
Confidence 999999885
No 11
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific. This enzyme interconverts alpha-D-glucose-1-P and alpha-D-glucose-6-P.
Probab=99.77 E-value=8.6e-19 Score=134.43 Aligned_cols=76 Identities=26% Similarity=0.265 Sum_probs=70.4
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecC-----CccCchHHHHHHHHHHHHHHHhhCCCCH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGT-----HVLDKDGVTAAVRMAELVAYLDSQGKDL 77 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~-----~~~dkDGi~aa~l~~e~~~~~~~~~~~l 77 (87)
+|+++|+++++|+||||||.+.|.+ .+++||+|||+|++|++ |.+++||++++++++|+++. +|+||
T Consensus 357 ia~~~g~~v~~t~vG~k~i~~~m~~-----~~~~~ggEeSgg~~~~~~~~~~~~~~~Dgi~a~l~ile~la~---~~~~L 428 (543)
T TIGR01132 357 VVADLGRQLVEVPVGFKWFVDGLFD-----GSFGFGGEESAGASFLRFDGTPWSTDKDGIIMCLLAAEITAV---TGKNP 428 (543)
T ss_pred HHHHcCCceeecCccHHHHHHHHhc-----CCeEEEEeccCceEecccCCCCcccCcHHHHHHHHHHHHHHH---hCCCH
Confidence 5789999999999999999999986 46999999999999954 89999999999999999998 89999
Q ss_pred HHHHHHHHh
Q psy16 78 HQLLADVYD 86 (87)
Q Consensus 78 ~~~l~~i~~ 86 (87)
+++++++++
T Consensus 429 ~~ll~~lp~ 437 (543)
T TIGR01132 429 QQHYNELAA 437 (543)
T ss_pred HHHHHHHHH
Confidence 999998874
No 12
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.76 E-value=2.1e-18 Score=129.26 Aligned_cols=76 Identities=13% Similarity=0.170 Sum_probs=71.5
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+|+++|+++++|||||||+.+.|.+ .+++||+|||+|++|++|.+++||++++++++|+++. ++++|+++++
T Consensus 293 ia~~~g~~v~~t~vG~~~i~~~~~~-----~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~la~---~~~~L~~l~~ 364 (445)
T cd05803 293 IARKHGVPVFRSAVGEANVVEKMKE-----VDAVIGGEGNGGVILPDVHYGRDSLVGIALVLQLLAA---SGKPLSEIVD 364 (445)
T ss_pred HHHHcCCEEEEecccHHHHHHHHHh-----cCCeEEEeccCCeecCCccccccHHHHHHHHHHHHHh---cCCCHHHHHH
Confidence 6789999999999999999999986 4699999999999999999999999999999999998 8999999999
Q ss_pred HHHh
Q psy16 83 DVYD 86 (87)
Q Consensus 83 ~i~~ 86 (87)
++++
T Consensus 365 ~~~~ 368 (445)
T cd05803 365 ELPQ 368 (445)
T ss_pred hchh
Confidence 8764
No 13
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=99.75 E-value=2e-18 Score=129.14 Aligned_cols=75 Identities=19% Similarity=0.146 Sum_probs=70.4
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+|+++|+++++|+||||||+++|.+ +++||+|||+|++|++|.++|||++++++++|+++. ++++|+++++
T Consensus 287 ~a~~~g~~~~~t~vG~~~i~~~m~~------~~~~ggE~sG~~~~~~~~~~~Dgi~a~l~lle~la~---~~~~l~~l~~ 357 (441)
T cd05805 287 LAERYGGRVIRTKTSPQALMEAALE------NVVLAGDGDGGFIFPEFHPGFDAIAALVKILEMLAR---TNISLSQIVD 357 (441)
T ss_pred HHHHcCCEEEEEeCChHHHHHHHHh------cccccccCCCcEEccccccCchHHHHHHHHHHHHHh---cCCCHHHHHH
Confidence 5788999999999999999999975 489999999999999999999999999999999998 8999999999
Q ss_pred HHHh
Q psy16 83 DVYD 86 (87)
Q Consensus 83 ~i~~ 86 (87)
++++
T Consensus 358 ~l~~ 361 (441)
T cd05805 358 ELPR 361 (441)
T ss_pred hCch
Confidence 8765
No 14
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=99.75 E-value=3.8e-18 Score=128.12 Aligned_cols=74 Identities=12% Similarity=0.049 Sum_probs=69.7
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+|+++|+++++||||||||.++|.+ .+++||+|||+|++|++|.+++||++++++++|+++. ++++|+++++
T Consensus 295 ia~~~g~~v~~t~vG~~~i~~~m~~-----~~~~~ggE~sG~~~~~~~~~~~Dgi~a~l~lle~la~---~~~~ls~l~~ 366 (446)
T PRK14324 295 YLKKHGIELKRCNVGDKYVLECMKE-----NGINFGGEQSGHIIFSDYAKTGDGLVSALQVSALMLE---SKKKASEALN 366 (446)
T ss_pred HHHHcCCeEEEeCChHHHHHHHHHh-----cCCEEEEcCcccEEecCcCCCCcHHHHHHHHHHHHHH---cCCCHHHHHH
Confidence 5789999999999999999999987 4699999999999999999999999999999999998 8999999998
Q ss_pred HH
Q psy16 83 DV 84 (87)
Q Consensus 83 ~i 84 (87)
++
T Consensus 367 ~~ 368 (446)
T PRK14324 367 PF 368 (446)
T ss_pred hh
Confidence 54
No 15
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.75 E-value=4.8e-18 Score=123.96 Aligned_cols=76 Identities=30% Similarity=0.447 Sum_probs=71.2
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+|+++|+++.+|||||||+.+.|.+ .+++||+|+|+|++|+++.+++||++++++++++++. ++++|+++++
T Consensus 234 ia~~~g~~v~~t~~G~~~i~~~m~~-----~~~~~ggE~sg~~~~~~~~~~~Dgi~a~l~~le~la~---~~~~Ls~l~~ 305 (355)
T cd03084 234 VAKKLGIKVIRTKTGFKWVGEAMQE-----GDVVLGGEESGGVIFPEFHPGRDGISAALLLLEILAN---LGKSLSELFS 305 (355)
T ss_pred HHHHcCCcEEEecCcHHHHHHHHHh-----cCceEEecCcCCEEECCcCCCCCHHHHHHHHHHHHHH---hCCCHHHHHH
Confidence 6788999999999999999999986 4799999999999999999999999999999999998 7999999999
Q ss_pred HHHh
Q psy16 83 DVYD 86 (87)
Q Consensus 83 ~i~~ 86 (87)
++++
T Consensus 306 ~~p~ 309 (355)
T cd03084 306 ELPR 309 (355)
T ss_pred HhhH
Confidence 8764
No 16
>KOG0625|consensus
Probab=99.73 E-value=2.6e-18 Score=128.44 Aligned_cols=77 Identities=22% Similarity=0.354 Sum_probs=70.1
Q ss_pred cccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCC-HHHH
Q psy16 2 MVDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKD-LHQL 80 (87)
Q Consensus 2 ~v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~-l~~~ 80 (87)
+||++.|.+++|||||||++++.|+. .+..+|||||.|-. ++|+|+|||+||.+.|+.|++. ++++ +.++
T Consensus 339 rVak~~gl~~yEvPTGWKfF~nLmDA-----gklsiCGEESFGTG-SdHIREKDGiWAvlaWlsIlA~---~k~~~vedI 409 (558)
T KOG0625|consen 339 RVAKKLGLPVYEVPTGWKFFGNLMDA-----GKLSICGEESFGTG-SDHIREKDGIWAVLAWLSILAH---NKQNVVEDI 409 (558)
T ss_pred HHHHHcCCceEEcCchHHHHHhhhcc-----cceeecccccccCC-ccccccccchhhHHHHHHHHHh---cccccHHHH
Confidence 58899999999999999999999986 58999999999988 8999999999999999999999 3443 9999
Q ss_pred HHHHHhC
Q psy16 81 LADVYDK 87 (87)
Q Consensus 81 l~~i~~~ 87 (87)
+.++|++
T Consensus 410 ~~~~W~~ 416 (558)
T KOG0625|consen 410 VKEHWAK 416 (558)
T ss_pred HHHHHHH
Confidence 9999864
No 17
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=99.73 E-value=8.6e-18 Score=126.11 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=68.6
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+|+++|+++++|+||||||.+.|.+ .+++||||||+|++|+++.+++||++++++++|+++. ++++|+++++
T Consensus 285 ~a~~~g~~~~~t~vG~~~i~~~m~~-----~~~~~ggE~sgg~~f~~~~~~~Dgi~a~~~lle~l~~---~~~~l~~l~~ 356 (445)
T PRK09542 285 LVAERGGTPVRTRVGHSFIKALMAE-----TGAIFGGEHSAHYYFRDFWGADSGMLAALHVLAALGE---QDRPLSELMA 356 (445)
T ss_pred HHHHcCCeEEEecCcHHHHHHHHHH-----hCCcEEEeeeccEEecCcCCCCcHHHHHHHHHHHHHh---cCCCHHHHHH
Confidence 6789999999999999999999986 4589999999999999999999999999999999988 8999999887
Q ss_pred H
Q psy16 83 D 83 (87)
Q Consensus 83 ~ 83 (87)
+
T Consensus 357 ~ 357 (445)
T PRK09542 357 D 357 (445)
T ss_pred h
Confidence 6
No 18
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=99.73 E-value=1.2e-17 Score=125.47 Aligned_cols=76 Identities=32% Similarity=0.493 Sum_probs=71.5
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+|+++|+++++|+|||+|+.+.|.+ .+++||+|+|+|++|+++.+++||++++++++|+++. ++++|+++++
T Consensus 294 ~a~~~g~~v~~t~~G~~~v~~~~~~-----~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ile~la~---~~~~L~~l~~ 365 (461)
T cd05800 294 IAEKHGLPVYETPVGFKYIAEKMLE-----EDVLIGGEESGGLGIRGHIPERDGILAGLLLLEAVAK---TGKPLSELVA 365 (461)
T ss_pred HHHHhCCeeeeCCCCHHHHHHHHhh-----CCeEEEEcCcCceeCCCCCCCchHHHHHHHHHHHHHh---hCCCHHHHHH
Confidence 5788999999999999999999986 4699999999999999999999999999999999998 8999999999
Q ss_pred HHHh
Q psy16 83 DVYD 86 (87)
Q Consensus 83 ~i~~ 86 (87)
++++
T Consensus 366 ~l~~ 369 (461)
T cd05800 366 ELEE 369 (461)
T ss_pred HHHH
Confidence 9874
No 19
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=99.73 E-value=1.2e-17 Score=125.95 Aligned_cols=76 Identities=20% Similarity=0.196 Sum_probs=71.0
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+++++|+++++||||||||.++|.+ .+++||+|||+|++|++|.+++||++++++++++++. ++++|+++++
T Consensus 308 ~~~~~g~~v~~t~vG~~~i~~~m~~-----~~~~~ggE~sg~~~~~~~~~~~Dgi~a~l~ile~la~---~~~~lsel~~ 379 (465)
T PRK14317 308 AWQQRGGQLERTAVGDQHVHAAMLE-----TGAMLGGEQSGHILCHHHGLSGDGLLTALHLATLVHQ---SGVSLAELVD 379 (465)
T ss_pred HHHHcCCeEEEcCCchHHHHHHHHH-----cCcEeeccccceEEEeccccCCcHHHHHHHHHHHHHH---hCCCHHHHHH
Confidence 5778999999999999999999987 4699999999999999999999999999999999988 8999999999
Q ss_pred HHHh
Q psy16 83 DVYD 86 (87)
Q Consensus 83 ~i~~ 86 (87)
++|.
T Consensus 380 ~~~~ 383 (465)
T PRK14317 380 QSFQ 383 (465)
T ss_pred hHHH
Confidence 8754
No 20
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=99.72 E-value=1e-17 Score=125.73 Aligned_cols=74 Identities=15% Similarity=0.112 Sum_probs=69.4
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+|+++|+++++||||||||.++|.+ .+++||+|||+|++|++|.+++||++++++++|+++. ++++|+++++
T Consensus 296 ~a~~~g~~v~~t~vG~~~i~~~m~~-----~~~~~ggE~sg~~~f~~~~~~~Dgi~a~l~lle~la~---~~~~L~~l~~ 367 (448)
T PRK14315 296 FLADRGLTLERTAVGDRYVVEHMRE-----GGFNLGGEQSGHIVLSDYATTGDGLVAALQVLAVVVR---SGRPASEVCR 367 (448)
T ss_pred HHHHcCCeEEEeCChHHHHHHHHHh-----CCCceeecccccEeecccCCCCcHHHHHHHHHHHHHH---hCCCHHHHhh
Confidence 6789999999999999999999986 4699999999999999999999999999999999998 8999999998
Q ss_pred HH
Q psy16 83 DV 84 (87)
Q Consensus 83 ~i 84 (87)
++
T Consensus 368 ~~ 369 (448)
T PRK14315 368 RF 369 (448)
T ss_pred hc
Confidence 54
No 21
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=99.72 E-value=1.4e-17 Score=124.78 Aligned_cols=74 Identities=16% Similarity=0.122 Sum_probs=69.1
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+|+++|+++++|||||||+.+.|.+ .+++||+|||+|++|++|.+++||++++++++|+++. ++++|+++++
T Consensus 292 ~a~~~g~~v~~t~vG~~~i~~~m~~-----~~~~~ggE~sG~~~~~~~~~~~Dgi~a~l~ile~la~---~~~~l~~l~~ 363 (443)
T TIGR01455 292 ALEKLGLTLIRTAVGDRYVLEEMRE-----SGYNLGGEQSGHIILLDYSTTGDGIVSALQVLTIMKK---SGSTLSELAA 363 (443)
T ss_pred HHHHcCCeEEEeCChHHHHHHHHHh-----cCCEEEEcCcceEEecCCCcCCcHHHHHHHHHHHHHH---hCCCHHHHHh
Confidence 5788999999999999999999986 4689999999999999999999999999999999988 8999999998
Q ss_pred HH
Q psy16 83 DV 84 (87)
Q Consensus 83 ~i 84 (87)
++
T Consensus 364 ~~ 365 (443)
T TIGR01455 364 EF 365 (443)
T ss_pred hc
Confidence 54
No 22
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=99.71 E-value=2.1e-17 Score=123.88 Aligned_cols=74 Identities=16% Similarity=0.103 Sum_probs=69.3
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+|+++|+++.+|+||||||.++|.+ .+++||+|||+|++|++|.+++||++++++++|+++. ++++|+++++
T Consensus 290 ~a~~~g~~v~~t~vG~~~i~~~m~~-----~~~~~ggE~sg~~~~~~~~~~~Dgi~a~l~ile~la~---~~~~Ls~l~~ 361 (443)
T PRK10887 290 ALKQLGIPFVRAKVGDRYVLEKLQE-----KGWRLGGENSGHILCLDKTTTGDGIVAALQVLAAMVR---SGMSLADLCS 361 (443)
T ss_pred HHHHcCCcEEEcCCchHHHHHHHHh-----cCcEEEEecccceeccCccccCcHHHHHHHHHHHHHH---hCCCHHHHHh
Confidence 5788999999999999999999976 4689999999999999999999999999999999998 8999999998
Q ss_pred HH
Q psy16 83 DV 84 (87)
Q Consensus 83 ~i 84 (87)
++
T Consensus 362 ~~ 363 (443)
T PRK10887 362 GM 363 (443)
T ss_pred hc
Confidence 65
No 23
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=99.71 E-value=3.1e-17 Score=122.84 Aligned_cols=74 Identities=19% Similarity=0.124 Sum_probs=69.4
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+|+++|+++.+||||||||.++|.+ .+++||+|+|+|++|++|.+++||++++++++|+++. ++++|+++++
T Consensus 287 ~~~~~g~~v~~t~vG~~~i~~~m~~-----~~~~~ggE~sG~~~f~~~~~~~Dgi~a~l~~le~la~---~~~~ls~l~~ 358 (440)
T PRK14323 287 KLREAGIAFHRTAVGDRYVHEKLHA-----KGLTLGGEQSGHVLFLDHAPTGDGVLTALLTLAAMKA---LGTDLDAWYD 358 (440)
T ss_pred HHHHcCCeEEEeCChHHHHHHHHHh-----cCCeEEEcCcccEEeCCCCCCCcHHHHHHHHHHHHHH---hCCCHHHHHH
Confidence 5788999999999999999999986 4699999999999999999999999999999999998 8999999998
Q ss_pred HH
Q psy16 83 DV 84 (87)
Q Consensus 83 ~i 84 (87)
++
T Consensus 359 ~~ 360 (440)
T PRK14323 359 AL 360 (440)
T ss_pred hh
Confidence 64
No 24
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.71 E-value=2.8e-17 Score=122.83 Aligned_cols=73 Identities=23% Similarity=0.239 Sum_probs=68.6
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+|+++|+++++|+|||||+.++|.+ .+++||+|||+|++|+++.+++||++++++++|+++. + ++|+++++
T Consensus 283 ~a~~~g~~~~~~~~G~k~i~~~m~~-----~~~~~ggE~sgg~~~~~~~~~~Dgi~a~~~lle~l~~---~-~~l~~~~~ 353 (439)
T cd03087 283 VVEEAGGEVIRTPVGDVHVAEEMIE-----NGAVFGGEPNGGWIFPDHQLCRDGIMTAALLLELLAE---E-KPLSELLD 353 (439)
T ss_pred HHHHcCCEEEEEecChHHHHHHHHh-----cCCeEEecCCCCEecCCcCCcCCHHHHHHHHHHHHhc---C-CCHHHHHH
Confidence 6788999999999999999999986 4699999999999999999999999999999999998 7 99999998
Q ss_pred HH
Q psy16 83 DV 84 (87)
Q Consensus 83 ~i 84 (87)
++
T Consensus 354 ~~ 355 (439)
T cd03087 354 EL 355 (439)
T ss_pred hc
Confidence 75
No 25
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=99.71 E-value=2.7e-17 Score=123.60 Aligned_cols=74 Identities=15% Similarity=0.040 Sum_probs=68.3
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+|+++|+++++|||||+||.+.|.+ .+++||+|||+|++|++|.+++||++++++++|+++. ++ +|+++++
T Consensus 284 ~a~~~g~~v~~t~vG~~~i~~~m~~-----~~~~~ggE~sGg~~~~~~~~~~Dgi~a~~~ile~la~---~~-~Ls~l~~ 354 (449)
T PRK14321 284 YIRPLGGEVIRTRVGDVAVAEELAK-----HGGVFGGEPSGTWIIPQWNLTPDGIFAGALVLEMIDR---LG-PISELAK 354 (449)
T ss_pred HHHHcCCEEEEEecChHHHHHHHHh-----hCCEEEecCCCCEEeCCcCCCCCHHHHHHHHHHHHHc---CC-CHHHHHH
Confidence 5788999999999999999999986 4589999999999999999999999999999999998 77 9999998
Q ss_pred HHH
Q psy16 83 DVY 85 (87)
Q Consensus 83 ~i~ 85 (87)
++.
T Consensus 355 ~~~ 357 (449)
T PRK14321 355 EVP 357 (449)
T ss_pred hcc
Confidence 753
No 26
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=2.9e-17 Score=123.97 Aligned_cols=73 Identities=29% Similarity=0.296 Sum_probs=68.2
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+++.+|+++++|+||||||.++|++ .+.+||+|||+|++|++|++++||+.+++++++++++ .++++++++.
T Consensus 298 i~~~~g~~~~~t~vG~~~i~~~~~~-----~~~~~g~E~sg~~~~~~~~~~~Dgi~aal~ilel~~~---~~~~lsel~~ 369 (464)
T COG1109 298 IAKKLGGKVVRTKVGDKYIAEKMRE-----NGAVFGGEESGHIIFPDHVRTGDGLLAALLVLELLAE---SGKSLSELLA 369 (464)
T ss_pred HHHHcCCeEEEecCchHHHHHHHHh-----cCCeEEEcccCCEEECCCCcCCcHHHHHHHHHHHHHH---hCCCHHHHHH
Confidence 5788999999999999999999987 4579999999999999999999999999999999998 6779999988
Q ss_pred H
Q psy16 83 D 83 (87)
Q Consensus 83 ~ 83 (87)
.
T Consensus 370 ~ 370 (464)
T COG1109 370 E 370 (464)
T ss_pred h
Confidence 7
No 27
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=99.70 E-value=4.5e-17 Score=122.31 Aligned_cols=73 Identities=16% Similarity=0.086 Sum_probs=68.9
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+|+++|+++++||||||||.+.|.+ .+++||+|||+|++|++|.+++||++++++++|+++. ++++|+++++
T Consensus 297 ia~~~g~~v~~t~vG~~~i~~~m~~-----~~~~~ggE~sg~~~~~~~~~~~Dgi~a~l~~le~la~---~~~~Ls~l~~ 368 (450)
T PRK14314 297 AMKELGGQVLRTPVGDRYVVEEMRR-----GGANLGGEQSGHLIFLDHNTTGDGILSALQVLRIMIE---SGKPLSELAG 368 (450)
T ss_pred HHHHcCCEEEEeCChHHHHHHHHHh-----cCCEEEEeCcccEEEeCCCCCCcHHHHHHHHHHHHHH---hCCCHHHHHh
Confidence 5788999999999999999999987 4699999999999999999999999999999999998 8999999998
Q ss_pred H
Q psy16 83 D 83 (87)
Q Consensus 83 ~ 83 (87)
+
T Consensus 369 ~ 369 (450)
T PRK14314 369 L 369 (450)
T ss_pred h
Confidence 4
No 28
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=99.69 E-value=6.8e-17 Score=121.10 Aligned_cols=74 Identities=18% Similarity=0.140 Sum_probs=69.1
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+++++|+++++|||||||+.++|.+ .+++||+|+|+|++|++|.+++||++++++++++++. ++++|+++++
T Consensus 293 ~~~~~g~~v~~~~vG~~~i~~~m~~-----~~~~~ggE~sG~~~f~~~~~~~Dgi~a~l~ile~l~~---~~~~ls~l~~ 364 (448)
T PRK14316 293 ALEEEGINSVKTKVGDRYVVEEMRK-----GGYNLGGEQSGHIIFLDYNTTGDGLLTALQLAKVMKE---TGKKLSELAA 364 (448)
T ss_pred HHHHcCCeEEEeCChHHHHHHHHHh-----cCCeEEEcCcccEEecccCCCCcHHHHHHHHHHHHHH---hCCCHHHHHh
Confidence 4678999999999999999999986 4699999999999999999999999999999999988 8999999998
Q ss_pred HH
Q psy16 83 DV 84 (87)
Q Consensus 83 ~i 84 (87)
++
T Consensus 365 ~~ 366 (448)
T PRK14316 365 EM 366 (448)
T ss_pred hh
Confidence 65
No 29
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.69 E-value=7.7e-17 Score=120.41 Aligned_cols=74 Identities=18% Similarity=0.167 Sum_probs=69.4
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+++++|+++++||||||||.++|.+ .+++||+|+|+|++|++|.+++||++++++++++++. ++++|+++++
T Consensus 289 ~~~~~g~~v~~~~~G~~~i~~~~~~-----~~~~~ggE~sG~~~f~~~~~~~Dgi~a~l~lle~la~---~~~~ls~l~~ 360 (434)
T cd05802 289 ALKELGIKLVRTKVGDRYVLEEMLK-----HGANLGGEQSGHIIFLDHSTTGDGLLTALQLLAIMKR---SGKSLSELAS 360 (434)
T ss_pred HHHHcCCeEEEEcChHHHHHHHHHh-----cCCEEEEecCCCEEecCcCCCCcHHHHHHHHHHHHHH---hCCCHHHHHh
Confidence 5788999999999999999999986 4699999999999999999999999999999999988 8999999998
Q ss_pred HH
Q psy16 83 DV 84 (87)
Q Consensus 83 ~i 84 (87)
++
T Consensus 361 ~l 362 (434)
T cd05802 361 DM 362 (434)
T ss_pred hc
Confidence 64
No 30
>PRK14322 glmM phosphoglucosamine mutase; Provisional
Probab=99.69 E-value=6.4e-17 Score=120.90 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=69.3
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+++++|+++++|||||+||.++|.+ .+++||+|+|+|++|+++.+++||+++++.++++++. ++++|+++++
T Consensus 283 ~a~~~g~~v~~t~vG~~~i~~~m~~-----~~~~~ggE~sG~~~~~~~~~~~Dgi~a~l~lle~la~---~~~~Ls~l~~ 354 (429)
T PRK14322 283 FLKERGIKLLRTKVGDKYVLEKMLE-----SGANLGGERSGHIIILDRSTTGDGLITALELMRVLKR---SGRNLSDFAK 354 (429)
T ss_pred HHHHcCCeEEEeCCccHHHHHHHhh-----cCcceeccCCceEEecCCCCCCcHHHHHHHHHHHHHH---hCCCHHHHHh
Confidence 5788999999999999999999987 4699999999999999999999999999999999998 8999999998
Q ss_pred HH
Q psy16 83 DV 84 (87)
Q Consensus 83 ~i 84 (87)
++
T Consensus 355 ~l 356 (429)
T PRK14322 355 EI 356 (429)
T ss_pred hc
Confidence 54
No 31
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=99.68 E-value=1.4e-16 Score=119.68 Aligned_cols=74 Identities=18% Similarity=0.174 Sum_probs=68.7
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+++++|+++.+|||||||+.+.|.+ .+++||+|+|+|++|+++.+++||++++++++++++. ++++|+++++
T Consensus 295 ~~~~~g~~v~~t~vG~~~i~~~~~~-----~~~~~ggE~sG~~~~~~~~~~~Dgi~a~l~ile~la~---~~~~ls~l~~ 366 (448)
T PRK14318 295 AMREAGITVVTTAVGDRYVLEEMRA-----GGYSLGGEQSGHIVMPDHATTGDGILTGLRLMARMAQ---TGKSLAELAS 366 (448)
T ss_pred HHHHcCCcEEEeCChHHHHHHHHHh-----cCcEEEEcCcCcEEecCCCCCCCHHHHHHHHHHHHHH---hCCCHHHHHh
Confidence 4678999999999999999999986 4699999999999999999999999999999999998 8999999997
Q ss_pred HH
Q psy16 83 DV 84 (87)
Q Consensus 83 ~i 84 (87)
++
T Consensus 367 ~~ 368 (448)
T PRK14318 367 AM 368 (448)
T ss_pred hh
Confidence 53
No 32
>PRK14319 glmM phosphoglucosamine mutase; Provisional
Probab=99.67 E-value=1.2e-16 Score=119.37 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=69.2
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+++++|+++.+||||+||+.++|.+ .+++||+|+|+|++|++|.+++||+++++.++++++. ++++|+++++
T Consensus 280 ~~~~~g~~v~~t~~G~~~i~~~m~~-----~~~~~ggE~sG~~~f~~~~~~~Dgi~a~l~lle~l~~---~~~~ls~l~~ 351 (430)
T PRK14319 280 FLKNNGIKVVRTKVGDRYVLEEMLK-----LNATLGGERSGHIIYLDKSTTGDGLITALETLSVMVK---SGKKLSDLSN 351 (430)
T ss_pred HHHHCCCcEEEeCCchHHHHHHHHH-----cCCEEEEcccceEEEhhccCCCcHHHHHHHHHHHHHH---hCCCHHHHHh
Confidence 5778999999999999999999987 5699999999999999999999999999999999998 8999999998
Q ss_pred HH
Q psy16 83 DV 84 (87)
Q Consensus 83 ~i 84 (87)
++
T Consensus 352 ~~ 353 (430)
T PRK14319 352 EI 353 (430)
T ss_pred hc
Confidence 54
No 33
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=99.67 E-value=2.4e-16 Score=118.69 Aligned_cols=76 Identities=17% Similarity=0.207 Sum_probs=68.4
Q ss_pred CceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecC----------CccCchHHHHHHHHHHHHHHHhhCCCCH
Q psy16 8 NLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGT----------HVLDKDGVTAAVRMAELVAYLDSQGKDL 77 (87)
Q Consensus 8 g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~----------~~~dkDGi~aa~l~~e~~~~~~~~~~~l 77 (87)
++++++||||||||.++|.+..+.+.++++|+|||+|++|++ |.++|||++++++++++++. ++++|
T Consensus 283 ~~~~~~t~vG~~~i~~~m~~~~~~~~~~~~g~E~sg~~~~~~~~~~~~~~~~~~~~~Dgi~a~l~ile~l~~---~~~~L 359 (459)
T cd03088 283 FKRVVRTRIGSPYVIAAMAEAAAAGAGRVVGYEANGGFLLGSDIERNGRTLKALPTRDAVLPILAVLAAAKE---AGIPL 359 (459)
T ss_pred ceeEEECCCccHHHHHHHHHHHhcCCceEEEEecccceeccchhhccccccccCCCccHHHHHHHHHHHHHh---cCCCH
Confidence 379999999999999999876655556899999999999996 57899999999999999987 89999
Q ss_pred HHHHHHHHh
Q psy16 78 HQLLADVYD 86 (87)
Q Consensus 78 ~~~l~~i~~ 86 (87)
+++++++++
T Consensus 360 s~ll~~l~~ 368 (459)
T cd03088 360 SELVASLPA 368 (459)
T ss_pred HHHHHHHhh
Confidence 999999875
No 34
>PRK14320 glmM phosphoglucosamine mutase; Provisional
Probab=99.66 E-value=2e-16 Score=118.61 Aligned_cols=72 Identities=10% Similarity=0.056 Sum_probs=68.1
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+|+++|+++.+||||+++|.+.|.+ .+++||+|+|+|++|++|.+++||++++++++|+++. ++++|++++.
T Consensus 290 ~~~~~g~~~~~t~vG~~~i~~~m~~-----~~~~~ggE~sG~~~~~~~~~~~Dgi~a~~~lle~la~---~~~~ls~l~~ 361 (443)
T PRK14320 290 HYRANKIPFIRSKVGDRYVLEDLVK-----YGYKIGGESSGHVINLNFGTTGDGLFTAIQLLAIFSQ---ADKPVSEFKL 361 (443)
T ss_pred HHHHCCCCEEEecCchHHHHHHHHh-----CCCcEeecCCccEEccCCCCcCCHHHHHHHHHHHHHH---cCCCHHHHhc
Confidence 5788999999999999999999987 4699999999999999999999999999999999998 8999999986
No 35
>PLN02371 phosphoglucosamine mutase family protein
Probab=99.61 E-value=2.7e-15 Score=116.13 Aligned_cols=83 Identities=18% Similarity=0.125 Sum_probs=72.3
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhC--CCCHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQ--GKDLHQL 80 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~--~~~l~~~ 80 (87)
+|+++|+++++|+||||||.++|.+....+++++||+|||+|++++++...+||++++++++++++..+.. +++|+++
T Consensus 385 ia~~~G~~v~rt~vG~k~v~~~m~~~~~~~~~~~~ggEeSG~~~~~~~~~~dDg~~a~~~ile~la~~~~~~~~~~Lsel 464 (583)
T PLN02371 385 FIEKKGGKHHRFKRGYKNVIDKGVRLNSDGEETHLMIETSGHGALKENHFLDDGAYLAVKIIIELVRMRAAGAGGGLGDL 464 (583)
T ss_pred HHHHcCCeEEEecCchHHHHHHHHHhhccCCceEEEEcccCeEEECCCCCCCcHHHHHHHHHHHHHHHHhccCCCCHHHH
Confidence 57889999999999999999999886544456999999999999999999999999999999999874422 6779999
Q ss_pred HHHHH
Q psy16 81 LADVY 85 (87)
Q Consensus 81 l~~i~ 85 (87)
++++.
T Consensus 465 ~~~lp 469 (583)
T PLN02371 465 IEDLE 469 (583)
T ss_pred HHhch
Confidence 98754
No 36
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.44 E-value=2.6e-13 Score=104.05 Aligned_cols=69 Identities=13% Similarity=0.015 Sum_probs=64.2
Q ss_pred CCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccc--eeecCC------------------------------ccCc
Q psy16 7 NNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIG--FMDGTH------------------------------VLDK 54 (87)
Q Consensus 7 ~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G--~~~~~~------------------------------~~dk 54 (87)
+|+++++|+||||||.++|.+ .++.+|||+|+| ++|+++ ...+
T Consensus 329 ~G~~~~~t~vG~k~v~~~m~e-----~~~~~ggE~sGHgtvif~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~~g 403 (513)
T cd03086 329 LKVPVVCTPTGVKHLHHAAEE-----FDIGVYFEANGHGTVLFSESALAKIEENSSLSDEQEKAAKTLLAFSRLINQTVG 403 (513)
T ss_pred cCceEEEeCCcHHHHHHHHHH-----hCcceEEeccCCEEEEECchHHhhhhhhccccchhhhHHHHHHHHHHhhCCCCc
Confidence 799999999999999999987 469999999999 999998 5689
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy16 55 DGVTAAVRMAELVAYLDSQGKDLHQLLAD 83 (87)
Q Consensus 55 DGi~aa~l~~e~~~~~~~~~~~l~~~l~~ 83 (87)
||+.++++++++++. .|++++|+++.
T Consensus 404 Dgi~~al~vl~~l~~---~~~~lsel~~~ 429 (513)
T cd03086 404 DAISDMLAVELILAA---LGWSPQDWDNL 429 (513)
T ss_pred HHHHHHHHHHHHHHH---hCCCHHHHHhh
Confidence 999999999999998 79999999884
No 37
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=3.8e-14 Score=106.75 Aligned_cols=75 Identities=24% Similarity=0.270 Sum_probs=61.3
Q ss_pred cccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhh-----CCCC
Q psy16 2 MVDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDS-----QGKD 76 (87)
Q Consensus 2 ~v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~-----~~~~ 76 (87)
+|+++.|.+++||||||||+++.+.. .++.||||||-| ..|+|+|||+|+...+.-|++-++. .++.
T Consensus 334 RV~~~lGr~lyEvPvG~K~F~~~l~~-----g~~~~~GEESaG---a~~lRek~g~Wa~~~~~~Ilall~aei~a~t~~~ 405 (524)
T COG0033 334 RVVAKLGRGLYEVPVGFKWFVDGLDA-----GSFGFGGEESAG---ASFLREKGGVWATDKDGNILALLAAEITAVTGKI 405 (524)
T ss_pred HHHHHhCCceEEcCCcceeeeccccc-----cceeeccccccc---ccceecCCCceeeechhHHHHHHhhhchhhhccC
Confidence 57899999999999999999999986 589999999987 6688888888888777777766652 4666
Q ss_pred HHHHHHHH
Q psy16 77 LHQLLADV 84 (87)
Q Consensus 77 l~~~l~~i 84 (87)
.++..+++
T Consensus 406 ~~~~y~~~ 413 (524)
T COG0033 406 PQEHYAEL 413 (524)
T ss_pred HHHHHHHH
Confidence 66666554
No 38
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=99.06 E-value=5.9e-10 Score=86.89 Aligned_cols=71 Identities=15% Similarity=0.121 Sum_probs=64.9
Q ss_pred cc-CC-ceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccc--eeecC------------------------------C
Q psy16 5 FT-NN-LMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIG--FMDGT------------------------------H 50 (87)
Q Consensus 5 ~~-~g-~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G--~~~~~------------------------------~ 50 (87)
++ .| +++.+||||.||+.++|.+ .++.++||.||| ++|++ +
T Consensus 389 ~~~lg~~~v~~t~tGvk~l~~~a~e-----~di~iyfEaNGHGTvif~~~~~~~~~~~~~~~~~~~~a~~~L~~~~~l~n 463 (585)
T PTZ00302 389 NELLGRLRVYCAPTGVKNLHPKAHK-----YDIGIYFEANGHGTVLFNEKALAEWAKFLAKQNALNSACRQLEKFLRLFN 463 (585)
T ss_pred HHhcCCeeEEEEeCchHHHHHHHHh-----cCCeEEEccCCCEEEEECcHHHhhhhhhccccchhhhHHHHHHHhHhhhc
Confidence 44 78 9999999999999999987 579999999999 99999 7
Q ss_pred ccCchHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy16 51 VLDKDGVTAAVRMAELVAYLDSQGKDLHQLLAD 83 (87)
Q Consensus 51 ~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~~ 83 (87)
....|||++++++.+++++ +|.+++|.++.
T Consensus 464 ~~vGDai~~~L~v~~iL~~---~~~sl~e~~~~ 493 (585)
T PTZ00302 464 QTIGDAISDLLAVELALAF---LGLSFQDWLNL 493 (585)
T ss_pred CCCccHHHHHHHHHHHHHh---hCCCHHHHHhh
Confidence 8889999999999999998 89999998873
No 39
>PLN02895 phosphoacetylglucosamine mutase
Probab=99.02 E-value=8.1e-10 Score=85.80 Aligned_cols=72 Identities=18% Similarity=0.142 Sum_probs=64.9
Q ss_pred ccc-CCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccc--eeecCCcc----------------------------
Q psy16 4 DFT-NNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIG--FMDGTHVL---------------------------- 52 (87)
Q Consensus 4 ~~~-~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G--~~~~~~~~---------------------------- 52 (87)
.++ .|++++.||||.||+.++|.+ .++.++||.||| ++|+++..
T Consensus 357 l~~~lg~~v~~t~tGvk~l~~~a~e-----~digvyfEaNGHGTviFs~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~ 431 (562)
T PLN02895 357 LKQVLGLEVVCTPTGVKYLHEAAAE-----FDIGVYFEANGHGTVLFSERFLDWLEAAAAELSSKAKGSEAHKAARRLLA 431 (562)
T ss_pred HHHhcCCeEEEEeCchHHHHHHHHh-----cCceEEEccCCCeEEEEChHHHHHHhhhhhccccccccchhhHHHHHHHH
Confidence 345 899999999999999999987 579999999999 99998776
Q ss_pred --------CchHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy16 53 --------DKDGVTAAVRMAELVAYLDSQGKDLHQLLAD 83 (87)
Q Consensus 53 --------dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~~ 83 (87)
..|||++++++.+++++ +|.++++.++.
T Consensus 432 ~~~linq~vGDai~~~L~vl~iL~~---~~~sl~e~~~~ 467 (562)
T PLN02895 432 VSRLINQAVGDALSGLLLVEAILQY---RGWSLAEWNAL 467 (562)
T ss_pred HHHhhcCCccHHHHHHHHHHHHHHH---hCCCHHHHHhh
Confidence 68999999999999998 89999998873
No 40
>PF01368 DHH: DHH family; InterPro: IPR001667 This is a domain of predicted phosphoesterases that includes Drosophila prune protein and bacterial RecJ exonuclease []. The RecJ protein of Escherichia coli plays an important role in a number of DNA repair and recombination pathways. RecJ catalyzes processive degradation of single-stranded DNA in a 5'-to-3' direction. Sequences highly related to those encoding RecJ can be found in many of the eubacterial genomes sequenced to date [].; GO: 0016787 hydrolase activity, 0030145 manganese ion binding; PDB: 3DEV_A 2HAW_A 1WPN_A 1WPM_B 2IW4_B 1K23_D 2EB0_A 1I74_A 2ZXR_A 2ZXO_A ....
Probab=59.48 E-value=16 Score=22.59 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=18.0
Q ss_pred cCCccCchHHHHHHHHHHHHHHH
Q psy16 48 GTHVLDKDGVTAAVRMAELVAYL 70 (87)
Q Consensus 48 ~~~~~dkDGi~aa~l~~e~~~~~ 70 (87)
+...+|-||+.|++++..++..+
T Consensus 12 ~H~~~D~Dgl~Sa~~l~~~l~~~ 34 (145)
T PF01368_consen 12 GHINPDADGLGSAIALAKILKRL 34 (145)
T ss_dssp EBSS-SHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCchHHHHHHHHHHHHHHc
Confidence 34568999999999999988763
No 41
>COG0140 HisI Phosphoribosyl-ATP pyrophosphohydrolase [Amino acid transport and metabolism]
Probab=52.15 E-value=12 Score=22.92 Aligned_cols=48 Identities=25% Similarity=0.298 Sum_probs=32.3
Q ss_pred eccccceeecCCccCchHHHH--HHHHHHHHHHHhhCCCCHHHHHHHHHh
Q psy16 39 FEEAIGFMDGTHVLDKDGVTA--AVRMAELVAYLDSQGKDLHQLLADVYD 86 (87)
Q Consensus 39 ~EEs~G~~~~~~~~dkDGi~a--a~l~~e~~~~~~~~~~~l~~~l~~i~~ 86 (87)
|||+.-.++.....|++++.. |=++-.++.-+..+|.++.++++++-+
T Consensus 37 GEEa~E~~iAa~~~d~e~l~~E~ADLlYH~lVlL~~~gv~l~dV~~eL~~ 86 (92)
T COG0140 37 GEEAVEVILAAKDEDKEELVSEAADLLYHLLVLLAAQGLSLEDVLRELER 86 (92)
T ss_pred hHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 466666555556677888764 444444444455589999999998764
No 42
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=42.25 E-value=76 Score=24.90 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=15.9
Q ss_pred CchHHHHHHHHHHHHHH
Q psy16 53 DKDGVTAAVRMAELVAY 69 (87)
Q Consensus 53 dkDGi~aa~l~~e~~~~ 69 (87)
|-||+.|++++...+..
T Consensus 64 D~DGi~S~~~L~~~L~~ 80 (539)
T TIGR00644 64 DVDGITSTAILVEFLKD 80 (539)
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 99999999999999976
No 43
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=35.22 E-value=11 Score=24.42 Aligned_cols=18 Identities=44% Similarity=0.632 Sum_probs=11.4
Q ss_pred ccCCceEEEeccchhhHH
Q psy16 5 FTNNLMCWETLTGFKWMG 22 (87)
Q Consensus 5 ~~~g~~~~~t~vGfk~i~ 22 (87)
..+.+.+.+||||.|++.
T Consensus 73 ~~yklh~~eT~TGlKFvl 90 (142)
T PF04099_consen 73 DTYKLHCFETPTGLKFVL 90 (142)
T ss_dssp SS-EEEEEE-TTS-EEEE
T ss_pred CCEEEEEEEcCcCcEEEE
Confidence 456778889999988754
No 44
>PF10405 BHD_3: Rad4 beta-hairpin domain 3; InterPro: IPR018328 Mutations in the nucleotide excision repair (NER) pathway can cause the xeroderma pigmentosum skin cancer predisposition syndrome. NER lesions are limited to one DNA strand, but otherwise they are chemically and structurally diverse, being caused by a wide variety of genotoxic chemicals and ultraviolet radiation. The xeroderma pigmentosum C (XPC) protein has a central role in initiating global-genome NER by recognising the lesion and recruiting downstream factors. In NER in eukaryotes, DNA is incised on both sides of the lesion, resulting in the removal of a fragment ~25-30 nucleotides long. This is followed by repair synthesis and ligation. This reaction, in yeast, requires the damage binding factors Rad14, RPA, and the Rad4-Rad23 complex, the transcription factor TFIIH which contains the two DNA helicases Rad3 and Rad25, essential for creating a bubble structure, and the two endonucleases, the Rad1-Rad10 complex and Rad2, which incise the damaged DNA strand on the 5'- and 3'-side of the lesion, respectively []. The crystal structure of the yeast XPC orthologue Rad4 bound to DNA containing a cyclobutane pyrimidine dimer lesion has been determined. The structure shows that Rad4 inserts a beta-hairpin through the DNA duplex, causing the two damaged base pairs to flip out of the double helix. The expelled nucleotides of the undamaged strand are recognised by Rad4, whereas the two cyclobutane pyrimidine dimer-linked nucleotides become disordered. This indicates that the lesions recognised by Rad4/XPC thermodynamically destabilise the double helix in a manner that facilitates the flipping-out of two base pairs []. Homologues of all the above mentioned yeast genes, except for RAD7, RAD16, and MMS19, have been identified in humans, and mutations in these human genes affect NER in a similar fashion as they do in yeast, with the exception of XPC, the human counterpart of yeast RAD4. Deletion of RAD4 causes the same high level of UV sensitivity as do mutations in the other class 1 genes, and rad4 mutants are completely defective in incision. By contrast, XPC is required for the repair of nontranscribed regions of the genome but not for the repair of the transcribed DNA strand. This entry represents the DNA-binding domain of Rad4, which has a beta-hairpin structure []. Rad4 inserts a beta-hairpin through the DNA duplex, causing the two damaged base pairs to flip out of the double helix. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0005634 nucleus; PDB: 2QSG_A 2QSF_A 2QSH_A.
Probab=35.08 E-value=11 Score=22.17 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=13.6
Q ss_pred cccccCCceEEEeccchhh
Q psy16 2 MVDFTNNLMCWETLTGFKW 20 (87)
Q Consensus 2 ~v~~~~g~~~~~t~vGfk~ 20 (87)
.+|++.|+++.+.-|||.+
T Consensus 31 ~~a~~l~Idya~AV~GF~f 49 (76)
T PF10405_consen 31 KVAKKLGIDYAPAVVGFDF 49 (76)
T ss_dssp HHHHHTT---EEEEEEEEE
T ss_pred HHHHHcCCcEEeeecceeE
Confidence 3678899999999999988
No 45
>cd07977 TFIIE_beta_winged_helix TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity. Transcription Factor IIE (TFIIE) beta winged-helix (or forkhead) domain is located at the central core region of TFIIE beta. The winged-helix is a form of helix-turn-helix (HTH) domain which typically binds DNA with the 3rd helix. The winged-helix domain is distinguished by the presence of a C-terminal beta-strand hairpin unit (the wing) that packs against the cleft of the tri-helical core. Although most winged-helix domains are multi-member families, TFIIE beta winged-helix domain is typically found as a single orthologous group. TFIIE is one of the six eukaryotic general transcription factors (TFIIA, TFIIB, TFIID, TFIIE, TFIIF and TFIIH) that are required for transcription initiation of protein-coding genes. TFIIE is a heterotetramer consisting of two copies each of alpha and beta subunits. TFIIE beta contains several functional
Probab=33.88 E-value=72 Score=18.49 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhCC---CCHHHHHHHH
Q psy16 61 VRMAELVAYLDSQG---KDLHQLLADV 84 (87)
Q Consensus 61 ~l~~e~~~~~~~~~---~~l~~~l~~i 84 (87)
..++.++.++|.++ .|+.|+++++
T Consensus 9 t~l~~aV~ymK~r~~~Plt~~EIl~~l 35 (75)
T cd07977 9 TQLAKIVDYMKKRHQHPLTLDEILDYL 35 (75)
T ss_pred hhHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 34566677777677 4788888765
No 46
>KOG1017|consensus
Probab=33.31 E-value=15 Score=26.13 Aligned_cols=15 Identities=47% Similarity=0.594 Sum_probs=11.3
Q ss_pred eEEEeccchhhHHHH
Q psy16 10 MCWETLTGFKWMGTK 24 (87)
Q Consensus 10 ~~~~t~vGfk~i~~~ 24 (87)
.-++|||||||-+-+
T Consensus 118 c~VtTPTG~kYEGik 132 (267)
T KOG1017|consen 118 CTVTTPTGFKYEGIK 132 (267)
T ss_pred eeeecCCcceeecee
Confidence 457899999996543
No 47
>COG4321 Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis [General function prediction only]
Probab=29.91 E-value=89 Score=19.53 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=14.5
Q ss_pred HHHHHHhhCCCCHHHHHHHHHhC
Q psy16 65 ELVAYLDSQGKDLHQLLADVYDK 87 (87)
Q Consensus 65 e~~~~~~~~~~~l~~~l~~i~~~ 87 (87)
+|++. ++.|+..++.+||++
T Consensus 41 eIA~~---r~lt~a~LIaei~d~ 60 (102)
T COG4321 41 EIAER---RKLTVAALIAEIDDE 60 (102)
T ss_pred HHHHh---cCCcHHHHHHHHHhc
Confidence 45555 778888888888863
No 48
>TIGR01999 iscU FeS cluster assembly scaffold IscU. This model represents IscU, a homolog of the N-terminal region of NifU, an Fe-S cluster assembly protein found mostly in nitrogen-fixing bacteria. IscU is considered part of the IscSUA-hscAB-fdx system of Fe-S assembly, whereas NifU is found in nitrogenase-containing (nitrogen-fixing) species. A NifU-type protein is also found in Helicobacter and Campylobacter. IscU and NifU are considered scaffold proteins on which Fe-S clusters are assembled before transfer to apoproteins. This model excludes true NifU proteins as in Klebsiella pneumoniae and Anabaena sp. as well as archaeal homologs. It includes largely proteobacterial and eukaryotic forms.
Probab=29.37 E-value=96 Score=19.42 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 57 VTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 57 i~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+.++.++++++ .|+|+.|...
T Consensus 65 ~Asas~~~e~i-----~Gktl~ea~~ 85 (124)
T TIGR01999 65 IASSSLATELI-----KGKSLEEALK 85 (124)
T ss_pred HHHHHHHHHHH-----cCCCHHHHHh
Confidence 34445555555 5899888765
No 49
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=28.60 E-value=1.6e+02 Score=19.20 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhhCCCC
Q psy16 59 AAVRMAELVAYLDSQGKD 76 (87)
Q Consensus 59 aa~l~~e~~~~~~~~~~~ 76 (87)
.+.+..|++..+..+|..
T Consensus 76 Gg~lA~E~A~~Le~~G~~ 93 (229)
T PF00975_consen 76 GGILAFEMARQLEEAGEE 93 (229)
T ss_dssp HHHHHHHHHHHHHHTT-S
T ss_pred cHHHHHHHHHHHHHhhhc
Confidence 366777777777666653
No 50
>PF06799 DUF1230: Protein of unknown function (DUF1230); InterPro: IPR009631 This family represents Ycf36, which is found in plants, encoded in the genomes of algal chloroplasts and in cyanobacteria. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=28.10 E-value=32 Score=22.82 Aligned_cols=40 Identities=23% Similarity=0.538 Sum_probs=24.9
Q ss_pred ccchhhHHHHhHHhHhcCCeeEEEeccccceeecC------CccCchHHHHHHH
Q psy16 15 LTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGT------HVLDKDGVTAAVR 62 (87)
Q Consensus 15 ~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~------~~~dkDGi~aa~l 62 (87)
-.|+.||.+++.. ...-||||| +.-+. .++.||=+.+.--
T Consensus 84 yLGW~YV~~RL~s-------~tV~YEESG-WYDGQ~W~Kp~e~l~rDrLi~~yq 129 (144)
T PF06799_consen 84 YLGWSYVGDRLLS-------ATVEYEESG-WYDGQVWVKPPEVLARDRLIGSYQ 129 (144)
T ss_pred HhChHHHHhhhcc-------CcccccccC-ccCCccccCCHHHHHHHHHHhhhh
Confidence 3599999999864 344489996 43332 3556665554433
No 51
>PRK11325 scaffold protein; Provisional
Probab=27.51 E-value=1.1e+02 Score=19.34 Aligned_cols=28 Identities=32% Similarity=0.394 Sum_probs=14.8
Q ss_pred chHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 54 KDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 54 kDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
-+|...+..-+++++.+- .|+|+.|..+
T Consensus 60 ~~GC~is~Asas~~~e~~-~Gktl~ea~~ 87 (127)
T PRK11325 60 TYGCGSAIASSSLVTEWV-KGKTLDEALA 87 (127)
T ss_pred eeCCHHHHHHHHHHHHHH-cCCCHHHHHh
Confidence 344444333344433322 5899988765
No 52
>PF03569 Peptidase_C8: Peptidase family C8; InterPro: IPR005315 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C8 (clan CA). The peptidases are encoded by the double stranded viral RNAs belonging to the genus Hypovirus.
Probab=27.06 E-value=68 Score=22.15 Aligned_cols=51 Identities=22% Similarity=0.258 Sum_probs=34.5
Q ss_pred EeccchhhHHHHhHHhHhcCCe-eEEEeccc---------cceeecCCccCchHHHHHHHHH
Q psy16 13 ETLTGFKWMGTKTYDLEQEGKH-VLLAFEEA---------IGFMDGTHVLDKDGVTAAVRMA 64 (87)
Q Consensus 13 ~t~vGfk~i~~~~~~~~~~~~~-~~~g~EEs---------~G~~~~~~~~dkDGi~aa~l~~ 64 (87)
+|..||+-|...++...-+.++ ++.|.||. ++|+| .|..-|.|+--|--++
T Consensus 124 etfr~y~eIkAvL~~~l~n~p~~ilvGA~~~~v~DYV~A~~~FL~-~~qW~rNGLklA~~~~ 184 (212)
T PF03569_consen 124 ETFRNYKEIKAVLKVILWNSPEPILVGAEEGSVADYVKAGKHFLF-EHQWVRNGLKLAKGLA 184 (212)
T ss_pred cccccHHHHHHHHHHHHccCCcceEEecccCcHHHHHhccceeec-chHHHHhHHHHhhccC
Confidence 5788999999988877655455 78888763 23343 3677777776554443
No 53
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=26.98 E-value=1.1e+02 Score=20.09 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy16 57 VTAAVRMAELVAYLDSQGKDLHQLLADV 84 (87)
Q Consensus 57 i~aa~l~~e~~~~~~~~~~~l~~~l~~i 84 (87)
+.++.++++++ .|+|+.|.+.-.
T Consensus 68 ~ASss~~te~v-----~Gkti~EAl~i~ 90 (150)
T COG0822 68 IASSSMMTELV-----KGKTLDEALKIT 90 (150)
T ss_pred HHHHHHHHHHH-----cCCCHHHHHHHH
Confidence 34456666666 599999988754
No 54
>TIGR03419 NifU_clost FeS cluster assembly scaffold protein NifU, Clostridium type. NifU and NifS form a pair of iron-sulfur (FeS) cluster biosynthesis proteins much simpler than the ISC and SUF systems. Members of this protein family are a distinct group of NifU-like proteins, found always to a NifS-like protein and restricted to species that lack a SUF system. Typically, NIF systems service a smaller number of FeS-containing proteins than do ISC or SUF. Members of this particular branch typically are found, almost half the time, near the mnmA gene, involved in the carboxymethylaminomethyl modification of U34 in some tRNAs (see GenProp0704). While other NifU proteins are associated with nitrogen fixation, this family is not.
Probab=26.17 E-value=1.2e+02 Score=18.87 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHH
Q psy16 59 AAVRMAELVAYLDSQGKDLHQLLAD 83 (87)
Q Consensus 59 aa~l~~e~~~~~~~~~~~l~~~l~~ 83 (87)
++.++++++ .|+|+.|..+-
T Consensus 63 sas~~~e~i-----~Gk~l~ea~~i 82 (121)
T TIGR03419 63 SSSMATEMI-----KGKTLEEAWEL 82 (121)
T ss_pred HHHHHHHHH-----cCCCHHHHHHh
Confidence 345555555 58999886653
No 55
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=26.07 E-value=55 Score=25.25 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=17.9
Q ss_pred ccCchHHHHHHHHHHHHHHH
Q psy16 51 VLDKDGVTAAVRMAELVAYL 70 (87)
Q Consensus 51 ~~dkDGi~aa~l~~e~~~~~ 70 (87)
..|-||+.|++++.+.+..+
T Consensus 44 d~DaDGitS~ail~~~L~~~ 63 (491)
T COG0608 44 DYDADGITSAAILAKALRRL 63 (491)
T ss_pred ecCcccHHHHHHHHHHHHHc
Confidence 47999999999999999874
No 56
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=25.25 E-value=1.3e+02 Score=16.37 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy16 58 TAAVRMAELVAYLDSQGKDLHQLLAD 83 (87)
Q Consensus 58 ~aa~l~~e~~~~~~~~~~~l~~~l~~ 83 (87)
-.++-++..+.. +|+|+.|++.+
T Consensus 12 e~aa~iAk~A~~---~g~svre~v~~ 34 (55)
T PF10415_consen 12 EKAAEIAKEALA---EGRSVREVVLE 34 (55)
T ss_dssp HHHHHHHHHHHH---HT--HHHHHHH
T ss_pred HHHHHHHHHHHH---cCCCHHHHHHH
Confidence 345555555444 69999988764
No 57
>TIGR03188 histidine_hisI phosphoribosyl-ATP pyrophosphohydrolase. This enzyme, phosphoribosyl-ATP pyrophosphohydrolase, catalyses the second step in the histidine biosynthesis pathway. It often occurs as a fusion protein. This model a somewhat narrower scope than Pfam model pfam01503, as some paralogs that appear to be functionally distinct are excluded from this model.
Probab=23.72 E-value=49 Score=19.76 Aligned_cols=46 Identities=28% Similarity=0.322 Sum_probs=28.8
Q ss_pred eccccceeecCCccCchHHHH--HHHHHHHHHHHhhCCCCHHHHHHHH
Q psy16 39 FEEAIGFMDGTHVLDKDGVTA--AVRMAELVAYLDSQGKDLHQLLADV 84 (87)
Q Consensus 39 ~EEs~G~~~~~~~~dkDGi~a--a~l~~e~~~~~~~~~~~l~~~l~~i 84 (87)
+||+.-.+..-...|+|.+.. |=++-.++.-+..+|.++.++++++
T Consensus 37 gEEa~E~iiAa~~~d~~~~~~E~ADLlYHllVlL~~~gi~~~dV~~eL 84 (84)
T TIGR03188 37 GEEAVEVVIAAKNGDKEELVYEAADLLYHLLVLLAAQGVSLEDVLAEL 84 (84)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhC
Confidence 355554444434567777654 4455555555566899999988764
No 58
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=23.72 E-value=56 Score=20.31 Aligned_cols=36 Identities=17% Similarity=0.133 Sum_probs=25.7
Q ss_pred ceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeec
Q psy16 9 LMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDG 48 (87)
Q Consensus 9 ~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~ 48 (87)
.++..++.|+..+.+.+.++ ..+.++.|..+||..+
T Consensus 26 ~~~~~~~~~~~~l~~~l~~~----~~~~v~~E~tg~y~~~ 61 (144)
T PF01548_consen 26 FKFENDPAGLEKLLDWLASL----GPVLVVMEATGGYWRP 61 (144)
T ss_pred EEEeccccchhHHhhhhccc----cccccccccccccchh
Confidence 44556788888777777653 2689999999887643
No 59
>TIGR01994 SUF_scaf_2 SUF system FeS assembly protein, NifU family. Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred.
Probab=23.58 E-value=1.4e+02 Score=18.98 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy16 58 TAAVRMAELVAYLDSQGKDLHQLLAD 83 (87)
Q Consensus 58 ~aa~l~~e~~~~~~~~~~~l~~~l~~ 83 (87)
.++.++++++ .|+++.|...-
T Consensus 66 Asas~~~e~i-----~Gk~~~ea~~l 86 (137)
T TIGR01994 66 ASASMMTELI-----KGKTVEEALSL 86 (137)
T ss_pred HHHHHHHHHH-----cCCCHHHHHHH
Confidence 3345555555 58998887653
No 60
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=22.87 E-value=79 Score=20.94 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy16 55 DGVTAAVRMAELVAYLDSQGKDLHQLLADVY 85 (87)
Q Consensus 55 DGi~aa~l~~e~~~~~~~~~~~l~~~l~~i~ 85 (87)
+|..|+++.++|++. ....+.+.|....
T Consensus 116 ~~~nAA~~A~~ILa~---~d~~l~~kl~~~~ 143 (150)
T PF00731_consen 116 NGFNAALLAARILAL---KDPELREKLRAYR 143 (150)
T ss_dssp HHHHHHHHHHHHHHT---T-HHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhc---CCHHHHHHHHHHH
Confidence 889999999999987 5667777776543
No 61
>KOG2873|consensus
Probab=22.37 E-value=28 Score=25.49 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=25.4
Q ss_pred HhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHH
Q psy16 24 KTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAY 69 (87)
Q Consensus 24 ~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~ 69 (87)
-|+++.++-...+|||.| |++ ..|+++|+++|=.....
T Consensus 196 ~mk~l~~qf~gaifaYDe--G~l------~dD~vLA~alWRnlF~~ 233 (284)
T KOG2873|consen 196 YMKDLERQFYGAIFAYDE--GFL------SDDRVLATALWRNLFSG 233 (284)
T ss_pred HHHHHHHHHHHHHHHhcc--ccc------ccchHHHHHHHHHHhCC
Confidence 344444442357999998 665 35778899988777654
No 62
>PRK02759 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; Reviewed
Probab=21.52 E-value=79 Score=22.09 Aligned_cols=48 Identities=25% Similarity=0.365 Sum_probs=29.9
Q ss_pred ccccceeecCCccCchHHHH--HHHHHHHHHHHhhCCCCHHHHHHHHHhC
Q psy16 40 EEAIGFMDGTHVLDKDGVTA--AVRMAELVAYLDSQGKDLHQLLADVYDK 87 (87)
Q Consensus 40 EEs~G~~~~~~~~dkDGi~a--a~l~~e~~~~~~~~~~~l~~~l~~i~~~ 87 (87)
||+.-.+..-...++|.+.. |=++-.++.-+..+|.++.++++++-+|
T Consensus 153 EEA~E~iiAak~~d~~~li~E~ADLlYHllVlL~~~gv~l~dV~~eL~~R 202 (203)
T PRK02759 153 EEAVEVVLAAKNNDKEELINEAADLLYHLLVLLADQGLSLSDVIAELKER 202 (203)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 44443333323466776653 4455555555566899999999998764
No 63
>PF02186 TFIIE_beta: TFIIE beta subunit core domain; InterPro: IPR003166 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This entry represents the beta subunit of the transcription factor TFIIE.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005673 transcription factor TFIIE complex; PDB: 1D8K_A 1D8J_A.
Probab=21.40 E-value=1.5e+02 Score=16.66 Aligned_cols=23 Identities=22% Similarity=0.471 Sum_probs=13.6
Q ss_pred HHHHHHHHHhhCC--CCHHHHHHHH
Q psy16 62 RMAELVAYLDSQG--KDLHQLLADV 84 (87)
Q Consensus 62 l~~e~~~~~~~~~--~~l~~~l~~i 84 (87)
.++.++.++|+++ .|+.|+++++
T Consensus 6 ql~~~VeymK~r~~Plt~~eI~d~l 30 (65)
T PF02186_consen 6 QLAKAVEYMKKRDHPLTLEEILDYL 30 (65)
T ss_dssp HHHHHHHHHHHH-S-B-HHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHH
Confidence 4555666666555 4788888765
No 64
>PF13693 HTH_35: Winged helix-turn-helix DNA-binding; PDB: 1NEQ_A 1NER_A.
Probab=21.28 E-value=1.3e+02 Score=17.72 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=12.5
Q ss_pred HHHHHHHhhCCCCHHHHHHH
Q psy16 64 AELVAYLDSQGKDLHQLLAD 83 (87)
Q Consensus 64 ~e~~~~~~~~~~~l~~~l~~ 83 (87)
+.|.+.++.+|.||+++-.+
T Consensus 5 adI~AaL~krG~sL~~lsr~ 24 (78)
T PF13693_consen 5 ADIKAALRKRGTSLAALSRE 24 (78)
T ss_dssp HHHHHHHCTTS--HHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 45667777788888877544
No 65
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=21.25 E-value=1e+02 Score=16.53 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy16 56 GVTAAVRMAELVAYLDSQGKDLHQLLADVY 85 (87)
Q Consensus 56 Gi~aa~l~~e~~~~~~~~~~~l~~~l~~i~ 85 (87)
-|.++++++.+.++ -|.++.+-+..|.
T Consensus 7 ~iFsvvIil~If~~---iGl~IyQkikqIr 33 (49)
T PF11044_consen 7 TIFSVVIILGIFAW---IGLSIYQKIKQIR 33 (49)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 36778888888877 5666666665553
No 66
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=20.95 E-value=1.1e+02 Score=22.07 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=23.2
Q ss_pred CCeeEEEeccccceeecCCccCchHHHHHH
Q psy16 32 GKHVLLAFEEAIGFMDGTHVLDKDGVTAAV 61 (87)
Q Consensus 32 ~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~ 61 (87)
.+++++.+.+++||..++|...-.....|.
T Consensus 121 ~PdvVvT~d~~GgygHpDH~~v~~a~~~A~ 150 (283)
T TIGR03446 121 RPHVITTYDENGGYPHPDHIMCHEVSVEAF 150 (283)
T ss_pred CCEEEEecCCCCCCCChhHHHHHHHHHHHH
Confidence 468999999999999999876655555544
No 67
>PF01296 Galanin: Galanin; InterPro: IPR008174 Galanin is a peptide hormone that controls various biological activities []. Galanin-like immuno-reactivity has been found in the central and peripheral nervous systems of mammals, with high concentrations demonstrated in discrete regions of the central nervous system, including the median eminence, hypothalamus, arcuate nucleus, septum, neuro-intermediate lobe of the pituitary, and the spinal cord. Its localisation within neurosecretory granules suggests that galanin may function as a neurotransmitter, and it has been shown to coexist with a variety of other peptide and amine neurotransmitters within individual neurons []. Although the precise physiological role of galanin is uncertain, it has a number of pharmacological properties: it stimulates food intake, when injected into the third ventricle of rats; it increases levels of plasma growth hormone and prolactin, and decreases dopamine levels in the median eminence []; and infusion into humans results in hyperglycemia and glucose intolerance, and inhibits pancreatic release of insulin, somatostatin and pancreatic peptide. Galanin also modulates smooth muscle contractility within the gastro-intestinal and genito-urinary tracts, all such activities suggesting that the hormone may play an important role in the nervous modulation of endocrine and smooth muscle function []. Galanin is a 29 amino acid peptide processed from a larger precursor protein. Except in human, galanin is C-terminally amidated. Its sequence is highly conserved and the first 14 residues are identical in all currently known sequences.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=20.92 E-value=57 Score=15.70 Aligned_cols=11 Identities=27% Similarity=0.800 Sum_probs=7.8
Q ss_pred ccceeecCCcc
Q psy16 42 AIGFMDGTHVL 52 (87)
Q Consensus 42 s~G~~~~~~~~ 52 (87)
|.||+.++|..
T Consensus 6 sagyLlGPhai 16 (29)
T PF01296_consen 6 SAGYLLGPHAI 16 (29)
T ss_pred ccceEeccccc
Confidence 66888887643
No 68
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=20.82 E-value=1.4e+02 Score=16.04 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy16 59 AAVRMAELVAYLDSQGKDLHQLLADVY 85 (87)
Q Consensus 59 aa~l~~e~~~~~~~~~~~l~~~l~~i~ 85 (87)
++..+++++. .+.|+.++++.+.
T Consensus 18 ~a~~Iw~~~~----g~~t~~ei~~~l~ 40 (68)
T PF05402_consen 18 TAAFIWELLD----GPRTVEEIVDALA 40 (68)
T ss_dssp HHHHHHHH------SSS-HHHHHHHHH
T ss_pred HHHHHHHHcc----CCCCHHHHHHHHH
Confidence 4566666663 4678888877654
No 69
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.77 E-value=42 Score=25.34 Aligned_cols=44 Identities=18% Similarity=0.110 Sum_probs=27.9
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEE-eccccceeecCCccCchHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLA-FEEAIGFMDGTHVLDKDGVT 58 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g-~EEs~G~~~~~~~~dkDGi~ 58 (87)
+++++|.+.+...+||.... |.++.-. ..+++-. -++|.+|||-
T Consensus 256 ~vE~~~gk~i~i~d~~v~e~---------G~~f~~~~~D~NGq~---vrlR~~DGIh 300 (354)
T COG2845 256 AVEKLGGKFIDIWDGFVDEG---------GKDFVTTGVDINGQP---VRLRAKDGIH 300 (354)
T ss_pred HHHHhCCeEEEecccccccC---------CceeEEeccccCCce---EEEeccCCce
Confidence 46788888888888886421 2224433 3444332 2789999984
No 70
>PRK00400 hisE phosphoribosyl-ATP pyrophosphatase; Validated
Probab=20.59 E-value=2.3e+02 Score=17.61 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=30.5
Q ss_pred ccccceeecCCccCchHHHH--HHHHHHHHHHHhhCCCCHHHHHHHHHhC
Q psy16 40 EEAIGFMDGTHVLDKDGVTA--AVRMAELVAYLDSQGKDLHQLLADVYDK 87 (87)
Q Consensus 40 EEs~G~~~~~~~~dkDGi~a--a~l~~e~~~~~~~~~~~l~~~l~~i~~~ 87 (87)
||+.-.+.--...|+|.+.. |=++-.++.-+..+|.++.++++++-++
T Consensus 42 EEa~E~i~A~~~~d~~~~i~E~ADLlYHllVlL~~~gv~~~dV~~eL~~R 91 (105)
T PRK00400 42 EEATEVVIAAKDGDREELVYEIADLLYHLLVLLAARGISLEDVLAELERR 91 (105)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45444443333456676653 4455556556666899999999988653
No 71
>cd06664 IscU_like Iron-sulfur cluster scaffold-like proteins. IscU_like and NifU_like proteins. IscU and NifU function as a scaffold for the assembly of [2Fe-2S] clusters before they are transferred to apo target proteins. They are highly conserved and play vital roles in the ISC and NIF systems of Fe-S protein maturation. NIF genes participate in nitrogen fixation in several isolated bacterial species. The NifU domain, however, is also found in bacteria that do not fix nitrogen, so it may have wider significance in the cell. Human IscU interacts with frataxin, the Friedreich ataxia gene product, and incorrectly spliced IscU has been shown to disrupt iron homeostasis in skeletal muscle and cause myopathy.
Probab=20.57 E-value=2.1e+02 Score=17.49 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=15.6
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy16 53 DKDGVTAAVRMAELVAYLDSQGKDLHQLLAD 83 (87)
Q Consensus 53 dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~~ 83 (87)
.-+|...+..-+.+++.+- .|+++.+..+-
T Consensus 54 ~~~GC~i~~Asas~~~~~~-~Gk~~~ea~~i 83 (123)
T cd06664 54 QGFGCAISIASASLLTELI-KGKTLDEALKL 83 (123)
T ss_pred EecCcHHHHHHHHHHHHHH-cCCcHHHHHHH
Confidence 3344444433344433321 58898887764
No 72
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=20.47 E-value=1.2e+02 Score=22.05 Aligned_cols=16 Identities=6% Similarity=0.162 Sum_probs=12.3
Q ss_pred chHHHHHHHHHHHHHH
Q psy16 54 KDGVTAAVRMAELVAY 69 (87)
Q Consensus 54 kDGi~aa~l~~e~~~~ 69 (87)
|+|+.+++..++.+..
T Consensus 119 K~g~~a~l~a~~~l~~ 134 (400)
T PRK13983 119 GQGIVSSLLALKALMD 134 (400)
T ss_pred cchHHHHHHHHHHHHH
Confidence 8999888777776654
No 73
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=20.44 E-value=1.1e+02 Score=20.61 Aligned_cols=28 Identities=14% Similarity=-0.046 Sum_probs=20.2
Q ss_pred cccccCCceEEEeccchh------hHHHHhHHhH
Q psy16 2 MVDFTNNLMCWETLTGFK------WMGTKTYDLE 29 (87)
Q Consensus 2 ~v~~~~g~~~~~t~vGfk------~i~~~~~~~~ 29 (87)
++|...|..++.|.|||. .-...|.+..
T Consensus 138 ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~ 171 (203)
T cd00959 138 EIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAV 171 (203)
T ss_pred HHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh
Confidence 456778999999999996 4445555543
No 74
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=20.09 E-value=2.1e+02 Score=17.08 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=19.7
Q ss_pred hHHHH-HHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy16 55 DGVTA-AVRMAELVAYLDSQGKDLHQLLADVY 85 (87)
Q Consensus 55 DGi~a-a~l~~e~~~~~~~~~~~l~~~l~~i~ 85 (87)
+|... ...++.++.+ .|.++.++++.+-
T Consensus 37 ~~~~~ai~rliS~~Lr---~G~~~~~ii~~L~ 65 (95)
T PF12637_consen 37 SGNLEAIARLISLALR---SGVPPEEIIDQLR 65 (95)
T ss_pred hHHHHHHHHHHHHHHH---cCCCHHHHHHHhc
Confidence 44443 4566666666 7999999998764
No 75
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=20.08 E-value=1.2e+02 Score=18.11 Aligned_cols=76 Identities=20% Similarity=0.249 Sum_probs=34.4
Q ss_pred cccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy16 4 DFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLAD 83 (87)
Q Consensus 4 ~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~~ 83 (87)
|++.|+++....+-|+........-...+ -+-+-++...|-+++-+.-.+++--..-.+.-++ . ++.|+.++...
T Consensus 21 a~~~g~~~~~~~~~~~~~~~~~~~~~~~g-~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~~ai-~---~~~t~~~l~~~ 95 (110)
T PF02852_consen 21 ARKQGIDYEVVTVPFKSNDRARYYPETEG-FVKLIFDKKTGRILGAQIVGPNASELINELALAI-Q---NGLTVEDLADD 95 (110)
T ss_dssp HHHHTSGEEEEEEEEGGEHHHHHTTTTEE-EEEEEEETTTTBEEEEEEEETTHHHHHHHHHHHH-H---TTSBHHHHHTS
T ss_pred HHhccCceeeeeecccccchhcccCCcce-eeEEEEEeeccceeeeeeecCchHHHHHHHHHHH-H---cCCCHHHHhCC
Confidence 44566444433333433333322211122 2333345555666676665555443222222233 2 68888865544
Q ss_pred H
Q psy16 84 V 84 (87)
Q Consensus 84 i 84 (87)
+
T Consensus 96 ~ 96 (110)
T PF02852_consen 96 I 96 (110)
T ss_dssp B
T ss_pred e
Confidence 3
Done!