Query psy16
Match_columns 87
No_of_seqs 100 out of 1050
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 18:21:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na5_A Phosphoglucomutase; iso 99.8 5.3E-21 1.8E-25 146.2 6.8 76 3-86 382-462 (570)
2 3pmg_A Alpha-D-glucose-1,6-bis 99.8 5.6E-21 1.9E-25 145.8 6.2 77 2-87 342-418 (561)
3 2z0f_A Putative phosphoglucomu 99.8 2E-20 6.8E-25 141.3 8.4 76 3-86 338-418 (524)
4 1tuo_A Putative phosphomannomu 99.8 8.8E-21 3E-25 141.7 6.3 76 3-86 300-375 (464)
5 1kfi_A Phosphoglucomutase 1; p 99.8 3.5E-20 1.2E-24 141.4 6.3 78 3-86 360-440 (572)
6 1wqa_A Phospho-sugar mutase; a 99.8 4.3E-20 1.5E-24 137.5 5.6 75 3-85 294-368 (455)
7 2f7l_A 455AA long hypothetical 99.8 6.7E-20 2.3E-24 136.4 6.5 73 3-83 294-366 (455)
8 3pdk_A Phosphoglucosamine muta 99.8 3.6E-19 1.2E-23 133.4 5.9 74 3-84 314-387 (469)
9 1p5d_X PMM, phosphomannomutase 99.7 1.7E-18 5.9E-23 129.1 6.5 76 3-86 293-369 (463)
10 4hjh_A Phosphomannomutase; str 99.7 3.2E-18 1.1E-22 128.3 5.2 76 7-86 294-379 (481)
11 3i3w_A Phosphoglucosamine muta 99.7 1.1E-18 3.9E-23 129.8 1.8 74 3-84 290-363 (443)
12 3uw2_A Phosphoglucomutase/phos 99.6 5.2E-16 1.8E-20 116.8 5.9 74 3-85 315-389 (485)
13 2dka_A Phosphoacetylglucosamin 99.4 2.8E-13 9.5E-18 102.9 6.1 58 4-66 356-427 (544)
14 2dka_A Phosphoacetylglucosamin 52.4 4.3 0.00015 30.6 0.9 30 52-84 431-460 (544)
15 1wpn_A Manganese-dependent ino 51.9 21 0.00071 22.6 4.1 23 47-69 7-29 (188)
16 2zxr_A Single-stranded DNA spe 33.9 89 0.0031 24.4 5.7 38 22-70 62-99 (666)
17 3dma_A Exopolyphosphatase-rela 30.2 46 0.0016 23.4 3.3 22 48-69 28-49 (343)
18 1d8j_A General transcription f 29.6 71 0.0024 18.3 3.5 24 61-84 11-41 (81)
19 2qq4_A Iron-sulfur cluster bio 27.8 64 0.0022 19.8 3.3 22 57-83 68-89 (138)
20 3lvl_A NIFU-like protein; prot 26.8 63 0.0022 19.6 3.1 21 57-82 68-88 (129)
21 1xjs_A NIFU-like protein; SR17 26.6 69 0.0024 19.9 3.3 22 57-83 70-91 (147)
22 2z7e_A ISCU protein, NIFU-like 25.4 74 0.0025 20.1 3.3 22 56-82 66-87 (157)
23 1su0_B NIFU like protein ISCU; 25.0 87 0.003 19.7 3.7 22 57-83 69-90 (159)
24 2haw_A Manganese-dependent ino 24.0 99 0.0034 21.1 4.1 23 47-69 7-29 (309)
25 3kk4_A Uncharacterized protein 20.7 87 0.003 19.4 2.9 27 55-86 36-62 (125)
No 1
>3na5_A Phosphoglucomutase; isomerase, metal binding; HET: BTB; 1.70A {Salmonella enterica subsp} PDB: 3olp_A 2fuv_A*
Probab=99.83 E-value=5.3e-21 Score=146.22 Aligned_cols=76 Identities=25% Similarity=0.256 Sum_probs=71.2
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecC-----CccCchHHHHHHHHHHHHHHHhhCCCCH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGT-----HVLDKDGVTAAVRMAELVAYLDSQGKDL 77 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~-----~~~dkDGi~aa~l~~e~~~~~~~~~~~l 77 (87)
+|+++|+++++||||||||+++|.+ .+++||||||+|++|.+ |++||||++++++++|+++. +|++|
T Consensus 382 ia~~~G~~~~~t~tG~k~i~~~m~~-----~~~~~ggEeSgg~~f~~~~g~~~~~dkDGi~aal~~le~~a~---~g~~l 453 (570)
T 3na5_A 382 VVNDLGRKLVEVPVGFKWFVDGLFD-----GSFGFGGEESAGASFLRFDGTPWSTDKDGIIMCLLAAEITAV---TGKNP 453 (570)
T ss_dssp HHHHHTCCEEEECSSTHHHHHHHHT-----TSEEEEEETTTEEEECCTTSCCSCSSCCHHHHHHHHHHHHHH---HSSCH
T ss_pred HHHHCCCceEEecccHHHHHHHHHh-----cCCeEEEeccCCcccccccccceeecCcHHHHHHHHHHHHHH---hCCCH
Confidence 6789999999999999999999986 57999999999999986 89999999999999999998 79999
Q ss_pred HHHHHHHHh
Q psy16 78 HQLLADVYD 86 (87)
Q Consensus 78 ~~~l~~i~~ 86 (87)
+++++++++
T Consensus 454 sell~~l~~ 462 (570)
T 3na5_A 454 QEHYNELAA 462 (570)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999976
No 2
>3pmg_A Alpha-D-glucose-1,6-bisphosphate; phosphoglucomutase, phosphotransferase; HET: SEP; 2.40A {Oryctolagus cuniculus} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1c4g_A* 1jdy_A* 1lxt_A 1vkl_A* 1c47_A*
Probab=99.83 E-value=5.6e-21 Score=145.83 Aligned_cols=77 Identities=26% Similarity=0.419 Sum_probs=70.8
Q ss_pred cccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHH
Q psy16 2 MVDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLL 81 (87)
Q Consensus 2 ~v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l 81 (87)
.+|+++|++++|||||||||++.|.+ .+++||||||+|+ +++|+++|||++++++++++++. +|++|+|++
T Consensus 342 ~va~~~G~~v~~t~vG~k~i~~~m~~-----~~~~~gGEeS~G~-~~~~~~~kDGi~aal~~le~la~---~g~~lsell 412 (561)
T 3pmg_A 342 RVANATKIALYETPTGWKFFGNLMDA-----SKLSLCGEESFGT-GSDHIREKDGLWAVLAWLSILAT---RKQSVEDIL 412 (561)
T ss_dssp HHHHTSSSCEEEECSSHHHHHHHHHT-----TCCSEEEETTTEE-EETTSSSCCHHHHHHHHHHHHHH---HCSCHHHHH
T ss_pred HHHHHcCCCEEEEeccHHHHHHHhcc-----CCeEEEEEecCCc-CCCeeecCCHHHHHHHHHHHHHH---hCCCHHHHH
Confidence 36889999999999999999999986 4789999999997 58999999999999999999987 899999999
Q ss_pred HHHHhC
Q psy16 82 ADVYDK 87 (87)
Q Consensus 82 ~~i~~~ 87 (87)
+++|++
T Consensus 413 ~~l~~~ 418 (561)
T 3pmg_A 413 KDHWHK 418 (561)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999863
No 3
>2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding, structural genomics; 2.52A {Thermus thermophilus}
Probab=99.82 E-value=2e-20 Score=141.27 Aligned_cols=76 Identities=26% Similarity=0.246 Sum_probs=71.5
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCC-----ccCchHHHHHHHHHHHHHHHhhCCCCH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTH-----VLDKDGVTAAVRMAELVAYLDSQGKDL 77 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~-----~~dkDGi~aa~l~~e~~~~~~~~~~~l 77 (87)
+|+++|+++++|+||||||.+.|.+ .+++||||||+|++|+++ +++|||++++++++|++++ +|+||
T Consensus 338 ia~~~G~~~~~t~tG~k~i~~~m~~-----~~~~~ggEeSgg~~~~~~~~~~~~~~~Dgi~aal~~le~~a~---~g~~L 409 (524)
T 2z0f_A 338 VAQALGREVYETPVGFKHFVAGLLE-----GWLGFAGEESAGASFLRFDGRPFSTDKDGILMGLLAAELMAK---RGQAP 409 (524)
T ss_dssp HHHHTTCCEEEECSSTHHHHHHHHH-----SSEEEEEETTTEEEECCTTSCCSCSSCCHHHHHHHHHHHHHH---HSSCH
T ss_pred HHHHhCceEEEcCCcHHHHHHHHhh-----CCcEEEEEccCcEEECCCCcccccccchHHHHHHHHHHHHHH---hCCCH
Confidence 5788999999999999999999986 579999999999999987 9999999999999999998 79999
Q ss_pred HHHHHHHHh
Q psy16 78 HQLLADVYD 86 (87)
Q Consensus 78 ~~~l~~i~~ 86 (87)
+++++++|+
T Consensus 410 ~ell~~l~~ 418 (524)
T 2z0f_A 410 DALYEALAE 418 (524)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999976
No 4
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis of alginate, structural genomics; 1.70A {Thermus thermophilus}
Probab=99.82 E-value=8.8e-21 Score=141.68 Aligned_cols=76 Identities=25% Similarity=0.346 Sum_probs=71.7
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+|+++|+++++||||||||.++|++ .+++||||||+|++|++|.++|||++++++++|+++. +|+||+|+++
T Consensus 300 ~a~~~g~~~~~t~tG~k~i~~~m~~-----~~~~~ggE~Sgg~~~~~~~~~~Dgi~a~l~~le~~a~---~g~~L~ell~ 371 (464)
T 1tuo_A 300 LGERLGFGVTTTPVGFKWIKEEFLK-----GDCFIGGEESGGVGYPEHLPERDGILTSLLLLESVAA---TGKDLAEQFK 371 (464)
T ss_dssp HHHHHTCCEEEECSSHHHHHHHHTT-----TCEEEEECTTSBEEETTTEEEECHHHHHHHHHHHHHH---HSCCHHHHHH
T ss_pred HHHHcCCeEEEecCcHHHHHHHHHh-----cCcEEEEccceeEEECCcCcCCCHHHHHHHHHHHHHh---hCCCHHHHHH
Confidence 5688999999999999999999986 5799999999999999999999999999999999997 8999999999
Q ss_pred HHHh
Q psy16 83 DVYD 86 (87)
Q Consensus 83 ~i~~ 86 (87)
++|+
T Consensus 372 ~l~~ 375 (464)
T 1tuo_A 372 EVEA 375 (464)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9876
No 5
>1kfi_A Phosphoglucomutase 1; parafusin, phosphoprotein PP63, exocytosis, isomerase; 2.40A {Paramecium tetraurelia} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1kfq_A
Probab=99.80 E-value=3.5e-20 Score=141.41 Aligned_cols=78 Identities=23% Similarity=0.386 Sum_probs=70.5
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCC---CHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGK---DLHQ 79 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~---~l~~ 79 (87)
+|+++|+++++|+||||||++.|++ ++++||||||+|+ +++|+++|||+++++++++++++++.+|+ ||+|
T Consensus 360 ia~~~G~~~~~t~tG~k~i~~~m~~-----~~~~~ggEeSgg~-~~~~~~~kDgi~a~l~~le~la~~~~~g~~~~tL~e 433 (572)
T 1kfi_A 360 VAAKNGIKLFETPTGWKFFGNLMDA-----GLINLCGEESFGT-GSNHIREKDGIWAVLAWLTILAHKNKNTDHFVTVEE 433 (572)
T ss_dssp HHHHHTCCEEEECSSTHHHHHHHHT-----TSCSEEEETTTEE-EETTSSSCCHHHHHHHHHHHHHHHTSSCSSCCCHHH
T ss_pred HHHHcCCeEEEeCCcHHHHHHHHhc-----CCcEEEEeccCCc-cccccCCCccHHHHHHHHHHHHHhccccCCCCCHHH
Confidence 6788999999999999999999986 4789999999998 68999999999999999999999665443 9999
Q ss_pred HHHHHHh
Q psy16 80 LLADVYD 86 (87)
Q Consensus 80 ~l~~i~~ 86 (87)
+++++|+
T Consensus 434 ll~~l~~ 440 (572)
T 1kfi_A 434 IVTQYWQ 440 (572)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 6
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form, enzyme-metal COMP isomerase; 2.00A {Pyrococcus horikoshii}
Probab=99.80 E-value=4.3e-20 Score=137.47 Aligned_cols=75 Identities=21% Similarity=0.309 Sum_probs=70.6
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+|+++|+++++||||||||.++|++ .+++||||||+|++|++|.++|||++++++++++++. +|+||+++++
T Consensus 294 ~a~~~g~~~~~t~tG~k~i~~~m~~-----~~~~~ggE~sgg~~~~~~~~~~Dgi~a~l~~le~l~~---~g~~L~~~~~ 365 (455)
T 1wqa_A 294 IAKKHGAKVMRTKVGDLIVARALYE-----NNGTIGGEENGGVIFPEHVLGRDGAMTVAKVVEIFAK---SGKKFSELID 365 (455)
T ss_dssp HHHHTTCEEEEECSSTTHHHHHHHH-----TTCSEEEETTEEEECTTTCSSCCHHHHHHHHHHHHHH---HCSCHHHHHH
T ss_pred HHHHCCCEEEEEcCcHHHHHHHHHh-----CCceEEEcCcCcEEECCcCcCccHHHHHHHHHHHHHh---cCCCHHHHHH
Confidence 5788999999999999999999987 5799999999999999999999999999999999987 8999999999
Q ss_pred HHH
Q psy16 83 DVY 85 (87)
Q Consensus 83 ~i~ 85 (87)
+++
T Consensus 366 ~l~ 368 (455)
T 1wqa_A 366 ELP 368 (455)
T ss_dssp TSC
T ss_pred hcc
Confidence 875
No 7
>2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase, phosphoglucomutase, isomerase; 2.80A {Sulfolobus tokodaii}
Probab=99.79 E-value=6.7e-20 Score=136.45 Aligned_cols=73 Identities=27% Similarity=0.238 Sum_probs=68.9
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+|+++|+++++|+||||||.++|++ .+++||||||+|++|++|+++|||++++++++++++. +|+||+|+++
T Consensus 294 ~a~~~g~~~~~t~~G~k~i~~~m~~-----~~~~~ggE~Sgg~~~~~~~~~~Dgi~a~l~~le~~a~---~g~~L~ell~ 365 (455)
T 2f7l_A 294 YLSKYNIQVDWTKVGSVDIAHKVAD-----ENALAGFEENGGFMYPPHQYVRDGAMSFALMLELLAN---ENVSSAELFD 365 (455)
T ss_dssp HHHTTTCEEEEECSCHHHHHHHHHH-----TTCSEEEETTEEEEBTTTBSSCCHHHHHHHHHHHHHH---HTCCHHHHHH
T ss_pred HHHHcCCEEEEEcCcHHHHHHHHHh-----cCcEEEEcCcCcEEECCcCCCCCHHHHHHHHHHHHHh---hCCCHHHHHH
Confidence 5788999999999999999999987 5799999999999999999999999999999999987 8999999996
Q ss_pred H
Q psy16 83 D 83 (87)
Q Consensus 83 ~ 83 (87)
+
T Consensus 366 ~ 366 (455)
T 2f7l_A 366 R 366 (455)
T ss_dssp T
T ss_pred h
Confidence 5
No 8
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold, phosphohexomutase; 2.70A {Bacillus anthracis}
Probab=99.76 E-value=3.6e-19 Score=133.40 Aligned_cols=74 Identities=15% Similarity=0.133 Sum_probs=68.6
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+++++|+++++|+||||||.++|.+ .+++||||||+|++|+++.++|||++++++++++++. +|+||+++++
T Consensus 314 ~~~~~G~~~~~t~tG~k~i~~~m~~-----~~~~~ggE~SG~~~~~~~~~~~Dgi~aal~~le~l~~---~g~~Lsel~~ 385 (469)
T 3pdk_A 314 ALEANGITSDKTAVGDRYVMEEMKR-----GGYNLGGEQSGHIILLDYITTGDGMLSALQLVNIMKM---TKKPLSELAG 385 (469)
T ss_dssp HHHHTTCEEEEECSSHHHHHHHHHH-----HTCCEEECTTSBEEETTTCSSCCHHHHHHHHHHHHHH---HTCCHHHHHT
T ss_pred HHHHcCCEEEEEcCchHHHHHHHhh-----cCCeEEEcccCCEecCCCCCCCCHHHHHHHHHHHHHH---cCCCHHHHHH
Confidence 5688999999999999999999987 4689999999999999999999999999999999987 8999999987
Q ss_pred HH
Q psy16 83 DV 84 (87)
Q Consensus 83 ~i 84 (87)
++
T Consensus 386 ~l 387 (469)
T 3pdk_A 386 EM 387 (469)
T ss_dssp TS
T ss_pred HH
Confidence 64
No 9
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase, phosphoserine, enzyme complex, enzyme-metal complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A* 3rsm_A 3bkq_X* 3c04_A* 2fkm_X*
Probab=99.74 E-value=1.7e-18 Score=129.07 Aligned_cols=76 Identities=17% Similarity=0.061 Sum_probs=70.5
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecC-CccCchHHHHHHHHHHHHHHHhhCCCCHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGT-HVLDKDGVTAAVRMAELVAYLDSQGKDLHQLL 81 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~-~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l 81 (87)
+++++|+++++||||||||.++|++ .++.||||||+|++|++ |..+|||+++++++++++++ +|++|+|++
T Consensus 293 ~~~~~g~~~~~t~tG~k~i~~~m~~-----~~~~~ggE~sG~~~~~~~~~~~~Dgi~aal~~le~~a~---~g~~Ls~ll 364 (463)
T 1p5d_X 293 LISGYGGRPVMWKTGHSLIKKKMKE-----TGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQ---DQRDSEHVF 364 (463)
T ss_dssp HHHHTTCEEEEECSSHHHHHHHHHH-----HCCSEEECTTSBEEETTTTCSSBCHHHHHHHHHHHHHT---CSSCHHHHH
T ss_pred HHHHcCCEEEEeCCcHHHHHHHHHh-----cCCceeecCCCcEEeccccCCCCcHHHHHHHHHHHHHH---hCCCHHHHH
Confidence 5678999999999999999999987 46899999999999998 78899999999999999998 899999999
Q ss_pred HHHHh
Q psy16 82 ADVYD 86 (87)
Q Consensus 82 ~~i~~ 86 (87)
+++++
T Consensus 365 ~~l~~ 369 (463)
T 1p5d_X 365 SAFPS 369 (463)
T ss_dssp HTSCC
T ss_pred HHhhH
Confidence 98875
No 10
>4hjh_A Phosphomannomutase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SEP G6Q; 2.10A {Brucella melitensis BV}
Probab=99.72 E-value=3.2e-18 Score=128.33 Aligned_cols=76 Identities=12% Similarity=0.095 Sum_probs=65.7
Q ss_pred CCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCC----------ccCchHHHHHHHHHHHHHHHhhCCCC
Q psy16 7 NNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTH----------VLDKDGVTAAVRMAELVAYLDSQGKD 76 (87)
Q Consensus 7 ~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~----------~~dkDGi~aa~l~~e~~~~~~~~~~~ 76 (87)
+| ++++|+||||||.+.|++..++|++++||||||+||+|+++ .++|||++++++++++++. +|++
T Consensus 294 ~~-~~~~t~vG~~~i~~~m~~~~~~g~~~~~GgEeSgg~~~~~~~~~d~~~~~~~~~~Dgi~a~l~~le~~a~---~g~~ 369 (481)
T 4hjh_A 294 FP-KVLRTRVGSPYVIASMAQVSTGNSGPVIGFEANGGVLLGSTVERNGRSLTALPTRDALLPILACLATVHE---KKTP 369 (481)
T ss_dssp CS-CEEEECSSHHHHHHHHHHCC----CCEEEECTTCCEEECSCEEETTEEECCEEEEESHHHHHHHHHHHHH---HTCC
T ss_pred cC-ceEEeccchHHHHHHHHHhhccCCCeEEEEeCCCCEEECchhcccccccccCCCccHHHHHHHHHHHHHH---cCCC
Confidence 44 89999999999999999866554579999999999999874 4699999999999999987 8999
Q ss_pred HHHHHHHHHh
Q psy16 77 LHQLLADVYD 86 (87)
Q Consensus 77 l~~~l~~i~~ 86 (87)
|+++++++++
T Consensus 370 Lsell~~l~~ 379 (481)
T 4hjh_A 370 LSTIARSYGF 379 (481)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 11
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne metal-binding, phosphoprotein, structural genomics; HET: SEP; 2.30A {Francisella tularensis subsp}
Probab=99.71 E-value=1.1e-18 Score=129.81 Aligned_cols=74 Identities=9% Similarity=0.044 Sum_probs=67.9
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+++++|+++++|+||||||.++|.+ .+++||||+|+|++|++|.+++||++++++++++++. +|++|+++++
T Consensus 290 ~~~~~G~~~~~t~~G~k~i~~~m~~-----~~~~~ggE~SG~~~~~~~~~~~Dgi~a~l~~le~l~~---~g~~Lsel~~ 361 (443)
T 3i3w_A 290 HYRANKIPFIRSKVGDRYVLEDLVK-----YGYKIGGESSGHVINLNFGTTGDGLFTAIQLLAIFSQ---ADKPVSEFKL 361 (443)
T ss_dssp HHHHTTCCEEEESSSTTHHHHHHHH-----HTCCEEECTTSBEEETTTCSSCCHHHHHHHHHHHTTT---CSSCGGGTSC
T ss_pred HHHHCCCeEEEEeChHHHHHHHHhh-----cCcEEEEEeeCcEEEcCcCcCCCHHHHHHHHHHHHHH---cCCCHHHHHH
Confidence 5688999999999999999999987 4689999999999999999999999999999999877 8999999876
Q ss_pred HH
Q psy16 83 DV 84 (87)
Q Consensus 83 ~i 84 (87)
++
T Consensus 362 ~~ 363 (443)
T 3i3w_A 362 QG 363 (443)
T ss_dssp SS
T ss_pred hh
Confidence 53
No 12
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural genomics, seattle structural genomics center for infectious disease; 1.95A {Burkholderia thailandensis}
Probab=99.61 E-value=5.2e-16 Score=116.82 Aligned_cols=74 Identities=19% Similarity=0.019 Sum_probs=66.3
Q ss_pred ccccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccceeecCC-ccCchHHHHHHHHHHHHHHHhhCCCCHHHHH
Q psy16 3 VDFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTH-VLDKDGVTAAVRMAELVAYLDSQGKDLHQLL 81 (87)
Q Consensus 3 v~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G~~~~~~-~~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l 81 (87)
+++++|+++++|+||||||.+.|++ .+++||||||+|++|+++ ..+|||++++++++|+++. ++ +|++++
T Consensus 315 ~~~~~g~~~~~t~vG~k~i~~~m~~-----~~~~~ggE~SG~~~f~~~~~~~~Dgi~aal~lle~la~---~~-~lsel~ 385 (485)
T 3uw2_A 315 WVREKGGEPLMWKTGHSLVKAKLRE-----TGAPLAGEMSGHVFFKDRWYGFDDGLYTGARLLEILAR---VA-DPSALL 385 (485)
T ss_dssp HHHHTTCEEEEECSSHHHHHHHHHH-----HCCSEEECTTSCEEETTTTCSSBCHHHHHHHHHHHHTT---SS-CHHHHH
T ss_pred HHHHcCCEEEEEcCChHHHHHHHHh-----hcccceecccCcEeeccccCCCCcHHHHHHHHHHHHHh---cC-CHHHHH
Confidence 4578999999999999999999987 468999999999999985 4689999999999999988 78 999999
Q ss_pred HHHH
Q psy16 82 ADVY 85 (87)
Q Consensus 82 ~~i~ 85 (87)
+++.
T Consensus 386 ~~lp 389 (485)
T 3uw2_A 386 NGLP 389 (485)
T ss_dssp HTSC
T ss_pred HHhh
Confidence 8764
No 13
>2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida albicans} PDB: 2dkc_A* 2dkd_A*
Probab=99.40 E-value=2.8e-13 Score=102.94 Aligned_cols=58 Identities=12% Similarity=0.086 Sum_probs=45.8
Q ss_pred cccCCceEEEeccchhhHHHHhHHhHhcCCeeEEEeccccc--eeecCCc------------cCchHHHHHHHHHHH
Q psy16 4 DFTNNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIG--FMDGTHV------------LDKDGVTAAVRMAEL 66 (87)
Q Consensus 4 ~~~~g~~~~~t~vGfk~i~~~~~~~~~~~~~~~~g~EEs~G--~~~~~~~------------~dkDGi~aa~l~~e~ 66 (87)
++++|+++++||||||||.++|++ .++.||||+|+| ++|+++. .+|||+.++++++++
T Consensus 356 ~~~~G~~v~~t~vG~k~v~~~m~~-----~~~~~ggE~sGhg~~if~~~~~~~~~~~~~~~~~~kd~~~~~~~~~~l 427 (544)
T 2dka_A 356 EDVLKIPVRCTPTGVKHLHHEAEN-----FDIGVYFEANGHGTVIFNPEAEKKIFDYKPNNDNEAKAIKVLQNFSQL 427 (544)
T ss_dssp HHTSCCCEEECCSSHHHHHHHHTT-----SSEEEEECTTSCEEEEECHHHHHHHHHCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHcCCceEEEeCcHHHHHHHHHh-----cCCcEEEcccCCeeEEECchhhhhhcccccCChhHHHHHHHHHHHHHH
Confidence 345999999999999999999987 579999999998 9999873 245555555554444
No 14
>2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida albicans} PDB: 2dkc_A* 2dkd_A*
Probab=52.44 E-value=4.3 Score=30.58 Aligned_cols=30 Identities=10% Similarity=0.056 Sum_probs=25.2
Q ss_pred cCchHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy16 52 LDKDGVTAAVRMAELVAYLDSQGKDLHQLLADV 84 (87)
Q Consensus 52 ~dkDGi~aa~l~~e~~~~~~~~~~~l~~~l~~i 84 (87)
+..||+.+++.++++++. .|+++++++..+
T Consensus 431 ~tgd~l~~~l~vl~~~~~---~g~~lsel~~~~ 460 (544)
T 2dka_A 431 TVGDAISDLLAVLIVVHY---LKLSPSDWDNEY 460 (544)
T ss_dssp SSCCHHHHHHHHHHHHHH---TTCCHHHHHTTS
T ss_pred ccCCCHHHHHHHHHHHHH---hCCCHHHHHhhh
Confidence 568999999999999888 899999887653
No 15
>1wpn_A Manganese-dependent inorganic pyrophosphatase; metal binding, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.107.1.1
Probab=51.94 E-value=21 Score=22.55 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=18.9
Q ss_pred ecCCccCchHHHHHHHHHHHHHH
Q psy16 47 DGTHVLDKDGVTAAVRMAELVAY 69 (87)
Q Consensus 47 ~~~~~~dkDGi~aa~l~~e~~~~ 69 (87)
++...+|-|++.|++.+..++..
T Consensus 7 ~gH~~pD~DaigSa~al~~~l~~ 29 (188)
T 1wpn_A 7 FGHQNPDTDTICSAIAYADLKNK 29 (188)
T ss_dssp ECCSSCCHHHHHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHHHHHH
Confidence 34456999999999999998876
No 16
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=33.95 E-value=89 Score=24.38 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=25.2
Q ss_pred HHHhHHhHhcCCeeEEEeccccceeecCCccCchHHHHHHHHHHHHHHH
Q psy16 22 GTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYL 70 (87)
Q Consensus 22 ~~~~~~~~~~~~~~~~g~EEs~G~~~~~~~~dkDGi~aa~l~~e~~~~~ 70 (87)
.+++.+..++++++++-+ |. |-||+.|++++...+..+
T Consensus 62 v~~i~~aI~~~ekI~I~G----------H~-D~DGi~Saa~L~~~L~~l 99 (666)
T 2zxr_A 62 AALLEEALRQGKRIRVHG----------DY-DADGLTGTAILVRGLAAL 99 (666)
T ss_dssp HHHHHHHHHTTCEEEEEC----------CS-SHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCeEEEEe----------cc-CCchHHHHHHHHHHHHHc
Confidence 344444444554555433 33 999999999999998773
No 17
>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.25A {Bacteroides fragilis}
Probab=30.17 E-value=46 Score=23.44 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=18.7
Q ss_pred cCCccCchHHHHHHHHHHHHHH
Q psy16 48 GTHVLDKDGVTAAVRMAELVAY 69 (87)
Q Consensus 48 ~~~~~dkDGi~aa~l~~e~~~~ 69 (87)
+...+|-|++.|++.+..++..
T Consensus 28 ~H~~pD~DaiGS~~~l~~~l~~ 49 (343)
T 3dma_A 28 SHVSPDGDAIGSSLGLYHFLDS 49 (343)
T ss_dssp ECSSCCHHHHHHHHHHHHHHHH
T ss_pred ecCCCChHHHHHHHHHHHHHHH
Confidence 3456999999999999999876
No 18
>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A
Probab=29.60 E-value=71 Score=18.28 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhh-----CC--CCHHHHHHHH
Q psy16 61 VRMAELVAYLDS-----QG--KDLHQLLADV 84 (87)
Q Consensus 61 ~l~~e~~~~~~~-----~~--~~l~~~l~~i 84 (87)
..++.++.++|. .+ .||.|+|+++
T Consensus 11 ~~lakiV~~mK~rh~~g~~~PltL~EILde~ 41 (81)
T 1d8j_A 11 GVLAKIVNYMKTRHQRGDTHPLTLDEILDET 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHTCCSCBCHHHHHHHH
T ss_pred ehHHHHHHHHHHhhccCCCCCccHHHHHHHH
Confidence 356777777775 33 5899999875
No 19
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=27.82 E-value=64 Score=19.78 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy16 57 VTAAVRMAELVAYLDSQGKDLHQLLAD 83 (87)
Q Consensus 57 i~aa~l~~e~~~~~~~~~~~l~~~l~~ 83 (87)
+.++.++++++ .|+|+.|.+.-
T Consensus 68 ~ASaS~~te~i-----~Gkt~~ea~~i 89 (138)
T 2qq4_A 68 TASASLMTEAV-----KGKKVAEALEL 89 (138)
T ss_dssp HHHHHHHHHHH-----TTSBHHHHHHH
T ss_pred HHHHHHHHHHH-----cCCcHHHHHHH
Confidence 44566777777 69999988763
No 20
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=26.79 E-value=63 Score=19.61 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 57 VTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 57 i~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
+.++.++++++ .|+|+.|.+.
T Consensus 68 ~ASaS~~te~i-----~Gkt~~ea~~ 88 (129)
T 3lvl_A 68 IASSSLVTEWV-----KGKSLDEAQA 88 (129)
T ss_dssp HHHHHHHHHHH-----TTCCHHHHHT
T ss_pred HHHHHHHHHHH-----cCCcHHHHHH
Confidence 44556777776 6999988764
No 21
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=26.59 E-value=69 Score=19.90 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy16 57 VTAAVRMAELVAYLDSQGKDLHQLLAD 83 (87)
Q Consensus 57 i~aa~l~~e~~~~~~~~~~~l~~~l~~ 83 (87)
+.++.++++++ .|+|+.|.+.-
T Consensus 70 ~ASaS~mte~v-----~Gkt~~Ea~~i 91 (147)
T 1xjs_A 70 MASASMMTQAI-----KGKDIETALSM 91 (147)
T ss_dssp HHHHHHHHHHH-----TTSBHHHHHHH
T ss_pred HHHHHHHHHHH-----cCCcHHHHHHH
Confidence 44566777777 69999988763
No 22
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=25.37 E-value=74 Score=20.14 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy16 56 GVTAAVRMAELVAYLDSQGKDLHQLLA 82 (87)
Q Consensus 56 Gi~aa~l~~e~~~~~~~~~~~l~~~l~ 82 (87)
++.++.++++++ .|+|+.|.+.
T Consensus 66 s~ASaS~mte~v-----~Gkt~~EA~~ 87 (157)
T 2z7e_A 66 AIAVSSMLTEMV-----KGKPIQYALN 87 (157)
T ss_dssp HHHHHHHHHHHH-----TTSBHHHHHH
T ss_pred HHHHHHHHHHHH-----cCCcHHHHHH
Confidence 456677888887 6999998775
No 23
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=25.03 E-value=87 Score=19.73 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy16 57 VTAAVRMAELVAYLDSQGKDLHQLLAD 83 (87)
Q Consensus 57 i~aa~l~~e~~~~~~~~~~~l~~~l~~ 83 (87)
+.++.++++++ .|+|+.|.+.-
T Consensus 69 ~ASaS~mte~v-----~Gkt~~Ea~~i 90 (159)
T 1su0_B 69 TASSSMMTDAV-----IGKSKEEALAL 90 (159)
T ss_dssp HHHHHHHHHHH-----TTCCHHHHHHH
T ss_pred HHHHHHHHHHH-----cCCcHHHHHHH
Confidence 44566777777 69999988763
No 24
>2haw_A Manganese-dependent inorganic pyrophosphatase; substrate complex, hydrolase; HET: 1PE PG4; 1.75A {Bacillus subtilis} SCOP: c.107.1.1 PDB: 1k23_A* 1wpm_A* 2iw4_A*
Probab=24.02 E-value=99 Score=21.06 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=18.9
Q ss_pred ecCCccCchHHHHHHHHHHHHHH
Q psy16 47 DGTHVLDKDGVTAAVRMAELVAY 69 (87)
Q Consensus 47 ~~~~~~dkDGi~aa~l~~e~~~~ 69 (87)
++-..+|-|++.|++.++.++..
T Consensus 7 ~gH~~pD~DaigSalal~~~l~~ 29 (309)
T 2haw_A 7 FGHQNPDTDTICSAIAYADLKNK 29 (309)
T ss_dssp ECCSSCCHHHHHHHHHHHHHHHH
T ss_pred EcCCCCChHHHHHHHHHHHHHHH
Confidence 34456999999999999988876
No 25
>3kk4_A Uncharacterized protein BP1543; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: CME; 1.95A {Bordetella pertussis tohama I}
Probab=20.67 E-value=87 Score=19.37 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHh
Q psy16 55 DGVTAAVRMAELVAYLDSQGKDLHQLLADVYD 86 (87)
Q Consensus 55 DGi~aa~l~~e~~~~~~~~~~~l~~~l~~i~~ 86 (87)
+-++.+ +-+|++. +|.|+.+++.+||+
T Consensus 36 ~~FW~~--L~eIA~~---~g~tv~~Lia~I~~ 62 (125)
T 3kk4_A 36 QLFWDV--LEEIAAR---DGMRVTQLIERLYD 62 (125)
T ss_dssp HHHHHH--HHHHHHH---TTCCHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHH---cCCCHHHHHHHHHH
Confidence 344443 3456666 78888888888863
Done!