RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16
(87 letters)
>gnl|CDD|100092 cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and
PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2
is thought to be a phosphopentomutase that catalyzes the
conversion of the nucleoside breakdown products,
ribose-1-phosphate and deoxyribose-1-phosphate to the
corresponding 5-phosphopentoses. PGM2L1 is thought to
catalyze the 1,3-bisphosphoglycerate-dependent synthesis
of glucose 1,6-bisphosphate and other
aldose-bisphosphates that serve as cofactors for several
sugar phosphomutases and possibly also as regulators of
glycolytic enzymes. PGM2 and PGM2L1 belong to the
alpha-D-phosphohexomutase superfamily which includes
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Other members of this superfamily include
phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 487
Score = 113 bits (286), Expect = 2e-31
Identities = 40/75 (53%), Positives = 53/75 (70%)
Query: 13 ETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDS 72
ETLTGFKW+G K +LE GK L FEE+IG++ G V DKDG++AA +AE+ AYL +
Sbjct: 332 ETLTGFKWIGNKIEELESGGKKFLFGFEESIGYLVGPFVRDKDGISAAALLAEMAAYLKA 391
Query: 73 QGKDLHQLLADVYDK 87
QGK L L ++Y+K
Sbjct: 392 QGKTLLDRLDELYEK 406
>gnl|CDD|240294 PTZ00150, PTZ00150, phosphoglucomutase-2-like protein; Provisional.
Length = 584
Score = 98.2 bits (245), Expect = 1e-25
Identities = 41/76 (53%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 13 ETLTGFKWMGTKTYDL-EQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLD 71
ETLTGFKW+G K +L + G L A+EEAIGFM GT V DKDGVTAA +AE+ YL
Sbjct: 374 ETLTGFKWIGNKAIELNAENGLTTLFAYEEAIGFMLGTRVRDKDGVTAAAVVAEMALYLY 433
Query: 72 SQGKDLHQLLADVYDK 87
+GK L + L +Y +
Sbjct: 434 ERGKTLVEHLESLYKQ 449
>gnl|CDD|217265 pfam02880, PGM_PMM_III, Phosphoglucomutase/phosphomannomutase,
alpha/beta/alpha domain III.
Length = 112
Score = 52.4 bits (127), Expect = 2e-10
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 7 NNLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAEL 66
T G K++ K + +L EE+ + KDG+ AA+ + E+
Sbjct: 39 LGGKLVRTKVGDKYVKEKMRE-----GGAVLGGEESGHIIFLDFATTKDGILAALLVLEI 93
Query: 67 VAYLDSQGKDLHQLLADVYDK 87
+A GK L +LL ++ ++
Sbjct: 94 LAE---TGKSLSELLEELPER 111
>gnl|CDD|100086 cd03084, phosphohexomutase, The alpha-D-phosphohexomutase
superfamily includes several related enzymes that
catalyze a reversible intramolecular phosphoryl transfer
on their sugar substrates. Members of this family
include the phosphoglucomutases (PGM1 and PGM2),
phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). These
enzymes play important and diverse roles in carbohydrate
metabolism in organisms from bacteria to humans. Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 355
Score = 54.7 bits (132), Expect = 2e-10
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 13 ETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDS 72
T TGFKW+G + V+L EE+ G + +DG++AA+ + E++A
Sbjct: 244 RTKTGFKWVGEAMQE-----GDVVLGGEESGGVIFPEFHPGRDGISAALLLLEILAN--- 295
Query: 73 QGKDLHQLLADVYD 86
GK L +L +++
Sbjct: 296 LGKSLSELFSELPR 309
>gnl|CDD|224034 COG1109, {ManB}, Phosphomannomutase [Carbohydrate transport and
metabolism].
Length = 464
Score = 50.0 bits (120), Expect = 8e-09
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 13 ETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDS 72
T G K++ K + + G + EE+ + HV DG+ AA+ + EL+A
Sbjct: 308 RTKVGDKYIAEK---MRENGA--VFGGEESGHIIFPDHVRTGDGLLAALLVLELLAES-- 360
Query: 73 QGKDLHQLLA 82
GK L +LLA
Sbjct: 361 -GKSLSELLA 369
>gnl|CDD|100093 cd05800, PGM_like2, This PGM-like (phosphoglucomutase-like) protein
of unknown function belongs to the
alpha-D-phosphohexomutase superfamily and is found in
both archaea and bacteria. The
alpha-D-phosphohexomutases include several related
enzymes that catalyze a reversible intramolecular
phosphoryl transfer on their sugar substrates. Other
members of this superfamily include phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four structural domains (subdomains)
with a centrally located active site formed by four
loops, one from each subdomain. All four subdomains are
included in this alignment model.
Length = 461
Score = 48.3 bits (116), Expect = 3e-08
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 8 NLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELV 67
L +ET GFK++ K + +E VL+ EE+ G H+ ++DG+ A + + E V
Sbjct: 299 GLPVYETPVGFKYIAEK---MLEED--VLIGGEESGGLGIRGHIPERDGILAGLLLLEAV 353
Query: 68 AYLDSQGKDLHQLLADVYDK 87
A GK L +L+A++ ++
Sbjct: 354 AKT---GKPLSELVAELEEE 370
>gnl|CDD|236050 PRK07564, PRK07564, phosphoglucomutase; Validated.
Length = 543
Score = 37.8 bits (89), Expect = 2e-04
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 17/80 (21%)
Query: 11 CWETLTGFKWMGTKTYDLEQEGKHVLLAF--EEAIG----FMDGT-HVLDKDGVTAAVRM 63
+E GFKW + +G L F EE+ G DG+ DKDG+ A +
Sbjct: 364 LYEVPVGFKWFV----NGLDDGS---LGFGGEESAGASFLRRDGSVWTTDKDGLIAVLLA 416
Query: 64 AELVAYLDSQGKDLHQLLAD 83
AE++A GK ++ +
Sbjct: 417 AEILA---VTGKSPSEIYRE 433
>gnl|CDD|100089 cd03087, PGM_like1, This archaeal PGM-like
(phosphoglucomutase-like) protein of unknown function
belongs to the alpha-D-phosphohexomutase superfamily
which includes several related enzymes that catalyze a
reversible intramolecular phosphoryl transfer on their
sugar substrates. The alpha-D-phosphohexomutases include
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Members of this superfamily include the
phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 439
Score = 36.0 bits (84), Expect = 7e-04
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 29 EQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLADV 84
E + E G++ H L +DG+ A + EL+A + K L +LL ++
Sbjct: 304 EMIENGAVFGGEPNGGWIFPDHQLCRDGIMTAALLLELLA----EEKPLSELLDEL 355
>gnl|CDD|234431 TIGR03990, Arch_GlmM, phosphoglucosamine mutase. The MMP1680
protein from Methanococcus maripaludis has been
characterized as the archaeal protein responsible for
the second step of UDP-GlcNAc biosynthesis. This GlmM
protein catalyzes the conversion of
glucosamine-6-phosphate to glucosamine-1-phosphate. The
first-characterized bacterial GlmM protein is modeled by
TIGR01455. These two families are members of the larger
phosphoglucomutase/phosphomannomutase family
(characterized by three domains: pfam02878, pfam02879
and pfam02880), but are not nearest neighbors to each
other. This model also includes a number of sequences
from non-archaea in the Bacteroides, Chlorobi,
Chloroflexi, Planctomycetes and Spirochaetes lineages.
Evidence supporting their inclusion in this equivalog as
having the same activity comes from genomic context and
phylogenetic profiling. A large number of these
organisms are known to produce exo-polysaccharide and
yet only appeared to contain the GlmS enzyme of the
GlmSMU pathway for UDP-GlcNAc biosynthesis
(GenProp0750). In some organisms including Leptospira,
this archaeal GlmM is found adjacent to the GlmS as well
as a putative GlmU non-orthologous homolog. Phylogenetic
profiling of the GlmS-only pattern using PPP identifies
members of this archaeal GlmM family as the
highest-scoring result [Central intermediary metabolism,
Amino sugars].
Length = 443
Score = 32.5 bits (75), Expect = 0.012
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 35 VLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLADV 84
+ E G++ H +DG+ AA EL+A +GK L +LLA++
Sbjct: 315 AVFGGEGNGGWIFPDHHYCRDGLMAAALFLELLA---EEGKPLSELLAEL 361
>gnl|CDD|100091 cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase
(PMM/PGM) bifunctional enzyme catalyzes the reversible
conversion of 1-phospho to 6-phospho-sugars (e.g.
between mannose-1-phosphate and mannose-6-phosphate or
glucose-1-phosphate and glucose-6-phosphate) via a
bisphosphorylated sugar intermediate. The reaction
involves two phosphoryl transfers, with an intervening
180 degree reorientation of the reaction intermediate
during catalysis. Reorientation of the intermediate
occurs without dissociation from the active site of the
enzyme and is thus, a simple example of processivity, as
defined by multiple rounds of catalysis without release
of substrate. Glucose-6-phosphate and
glucose-1-phosphate are known to be utilized for energy
metabolism and cell surface construction, respectively.
PMM/PGM belongs to the alpha-D-phosphohexomutase
superfamily which includes several related enzymes that
catalyze a reversible intramolecular phosphoryl transfer
on their sugar substrates. Other members of this
superfamily include phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the
phosphoglucomutases (PGM1 and PGM2). Each of these
enzymes has four domains with a centrally located active
site formed by four loops, one from each domain. All
four domains are included in this alignment model.
Length = 443
Score = 31.3 bits (72), Expect = 0.040
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 6/51 (11%)
Query: 36 LLAFEEA--IGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLADV 84
LLA E + I F D + D DG+ AA+R+ EL++ GK L +LLAD+
Sbjct: 312 LLAGEMSGHIFFKDRWYGFD-DGIYAALRLLELLSK---SGKTLSELLADL 358
>gnl|CDD|226003 COG3472, COG3472, Uncharacterized conserved protein [Function
unknown].
Length = 342
Score = 29.8 bits (67), Expect = 0.11
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 38 AFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLADVYDK 87
F EA GF+ H++ +D +M L+A + D D+
Sbjct: 73 GFIEAAGFLRKQHIVKRDEFIYYEQMVPLLAIYTYLTERNVD--PDHRDQ 120
>gnl|CDD|223111 COG0033, Pgm, Phosphoglucomutase [Carbohydrate transport and
metabolism].
Length = 524
Score = 28.9 bits (65), Expect = 0.30
Identities = 23/83 (27%), Positives = 29/83 (34%), Gaps = 17/83 (20%)
Query: 8 NLMCWETLTGFKWMGTKTYDLEQEGKHVLLAF--EEAIG-----FMDGTHVLDKDGVTAA 60
+E GFKW D G F EE+ G G DKDG A
Sbjct: 340 GRGLYEVPVGFKWFV----DGLDAGS---FGFGGEESAGASFLREKGGVWATDKDGNILA 392
Query: 61 VRMAELVAYLDSQGKDLHQLLAD 83
+ AE+ A GK + A+
Sbjct: 393 LLAAEITA---VTGKIPQEHYAE 412
>gnl|CDD|224018 COG1093, SUI2, Translation initiation factor 2, alpha subunit
(eIF-2alpha) [Translation, ribosomal structure and
biogenesis].
Length = 269
Score = 26.5 bits (59), Expect = 1.7
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 26 YDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGV 57
+ LE+E + AFE A +G VLD +GV
Sbjct: 127 WKLEEEFGSLYDAFEAAA--KEGGEVLDDEGV 156
>gnl|CDD|219460 pfam07541, EIF_2_alpha, Eukaryotic translation initiation factor
2 alpha subunit. These proteins share a region of
similarity that falls towards the C terminus from
pfam00575.
Length = 112
Score = 26.0 bits (58), Expect = 2.1
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 26 YDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVR 62
+ LE++ H AFE A + G VLD G+ +
Sbjct: 7 WPLEEKYGHAYDAFEAAA--IPGEEVLDDLGIPEEWK 41
>gnl|CDD|237876 PRK14975, PRK14975, bifunctional 3'-5' exonuclease/DNA polymerase;
Provisional.
Length = 553
Score = 26.1 bits (58), Expect = 2.7
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
Query: 62 RMAELVAYLDSQGKDLHQLLADV 84
RM E A+ G DLH+L A V
Sbjct: 348 RMIE--AF--RTGGDLHRLTASV 366
>gnl|CDD|225246 COG2371, UreE, Urease accessory protein UreE [Posttranslational
modification, protein turnover, chaperones].
Length = 155
Score = 25.7 bits (57), Expect = 3.0
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 32 GKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQL 80
G+ V L + DG +L +DG VR A L + K +L
Sbjct: 43 GREVGLRLPRGVLLRDGDVLLAEDGELIVVR-AAPEDVLVIRAKTPLEL 90
>gnl|CDD|193168 pfam12692, Methyltransf_17, S-adenosyl-L-methionine
methyltransferase. This domain is found in bacterial
proteins. The structure of the proteins in this family
suggest that they function as a methyltransferase.
Length = 160
Score = 25.4 bits (56), Expect = 3.9
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 48 GTHVLDKDGVTAAVRMAELVAYLDSQG 74
GT +KD A ++ L+A L + G
Sbjct: 102 GTGNKEKDDAFAT-WLSPLIAPLLAPG 127
>gnl|CDD|189857 pfam01146, Caveolin, Caveolin. All three known Caveolin forms
have the FEDVIAEP caveolin 'signature motif' within
their hydrophilic N-terminal domain. Caveolin 2 (Cav-2)
is co-localised and co-expressed with Cav-1/VIP21,
forms heterodimers with it and needs Cav-1 for proper
membrane localisation. Cav-3 has greater protein
sequence similarity to Cav-1 than to Cav-2. Cellular
processes caveolins are involved in include vesicular
transport, cholesterol homeostasis, signal
transduction, and tumour suppression.
Length = 148
Score = 25.3 bits (56), Expect = 4.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 34 HVLLAFEEAIGFMDGTHVLDK 54
H+ + FE+ I +GTH D
Sbjct: 34 HLKVGFEDVIAEPEGTHSFDG 54
>gnl|CDD|237215 PRK12815, carB, carbamoyl phosphate synthase large subunit;
Reviewed.
Length = 1068
Score = 25.3 bits (56), Expect = 4.9
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 22 GTKTYDLEQEGKHVLLAFEEAIGF---MDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLH 78
G D E+ AF + IG+ + ++V+ G+ L AYL L+
Sbjct: 688 GLTATDEEE-----AFAFAKRIGYPVLIRPSYVIGGQGMAVVYDEPALEAYLAENASQLY 742
Query: 79 QLLADVY 85
+L D +
Sbjct: 743 PILIDQF 749
>gnl|CDD|237559 PRK13921, PRK13921, CRISPR-associated Cse2 family protein;
Provisional.
Length = 173
Score = 25.2 bits (55), Expect = 5.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 51 VLDKDGVTAAVRMAELVAYLDSQGKDLHQLLADV 84
+L D A R+ + +A L QG D +LL D+
Sbjct: 104 LLGADADQLAHRLRQAIALLKEQGIDFEELLRDL 137
>gnl|CDD|177942 PLN02307, PLN02307, phosphoglucomutase.
Length = 579
Score = 25.4 bits (56), Expect = 5.2
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 8 NLMCWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELV 67
NL +E TG+K+ G +L GK + + EE+ G H+ +KDG+ A + ++
Sbjct: 362 NLPFFEVPTGWKFFG----NLMDAGK-LSICGEESFG-TGSDHIREKDGIWAVLAWLSIL 415
Query: 68 AY 69
A+
Sbjct: 416 AH 417
>gnl|CDD|215110 PLN00412, PLN00412, NADP-dependent glyceraldehyde-3-phosphate
dehydrogenase; Provisional.
Length = 496
Score = 25.1 bits (55), Expect = 5.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 54 KDGVTAAVRMAELVAYLDSQG 74
KD VT VR +L++Y +G
Sbjct: 108 KDAVTEVVRSGDLISYTAEEG 128
>gnl|CDD|184169 PRK13591, ubiA, prenyltransferase; Provisional.
Length = 307
Score = 25.0 bits (55), Expect = 6.4
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 42 AIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQG 74
+ F+ GT++L DG+ + + YL S+G
Sbjct: 106 LLAFLLGTYILAMDGMLLLAFLPFITGYLYSKG 138
>gnl|CDD|182543 PRK10554, PRK10554, outer membrane porin protein C; Provisional.
Length = 355
Score = 24.8 bits (54), Expect = 7.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 67 VAYLDSQGKDLHQLLADVYD 86
VAYL S+GKDL + Y
Sbjct: 280 VAYLQSKGKDLGNINGRNYG 299
>gnl|CDD|148553 pfam06998, DUF1307, Protein of unknown function (DUF1307). This
family consists of several hypothetical bacterial
proteins of around 150 residues in length. Some family
members are described as putative lipoproteins but the
function of the family is unknown.
Length = 123
Score = 24.2 bits (53), Expect = 7.6
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 23 TKTYDLEQEGKHVLLAF 39
TKTY + GK + L +
Sbjct: 2 TKTYVGDLNGKDIKLTY 18
>gnl|CDD|224149 COG1228, HutI, Imidazolonepropionase and related amidohydrolases
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 406
Score = 24.6 bits (54), Expect = 7.8
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 15 LTGFKWMGTKTYDLEQEGKHVLLAF--EEAIGFMDGTHVLDKDGV---TAAVRMA 64
+T + DLE EG H+ A +E+ G+ L GV A R A
Sbjct: 133 VTTGERKSGYGLDLETEGGHLRAAAGLKESRPVAVGSTPLAAHGVPEERKATREA 187
>gnl|CDD|182567 PRK10581, PRK10581, geranyltranstransferase; Provisional.
Length = 299
Score = 24.3 bits (53), Expect = 9.0
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 9/49 (18%)
Query: 22 GTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDG--VTAAVRMAELVA 68
G + DLE EGK V L E I H K G + AAVR+ L A
Sbjct: 156 GGQALDLEAEGKQVPLDALERI----HRH---KTGALIRAAVRLGALSA 197
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.414
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,504,775
Number of extensions: 370814
Number of successful extensions: 382
Number of sequences better than 10.0: 1
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 37
Length of query: 87
Length of database: 10,937,602
Length adjustment: 55
Effective length of query: 32
Effective length of database: 8,498,132
Effective search space: 271940224
Effective search space used: 271940224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)