RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16
         (87 letters)



>d3pmga3 c.84.1.1 (A:304-420) Phosphoglucomutase {Rabbit
           (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 117

 Score = 42.3 bits (99), Expect = 3e-07
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 9/77 (11%)

Query: 11  CWETLTGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYL 70
            +ET TG+K+ G        +   + L  EE+ G     H+ +KDG+ A +    ++A  
Sbjct: 48  LYETPTGWKFFGNL-----MDASKLSLCGEESFGTGSD-HIREKDGLWAVLAWLSILAT- 100

Query: 71  DSQGKDLHQLLADVYDK 87
             + + +  +L D + K
Sbjct: 101 --RKQSVEDILKDHWHK 115


>d1ogla_ a.204.1.1 (A:) Type II deoxyuridine triphosphatase
           {Trypanosoma cruzi [TaxId: 5693]}
          Length = 270

 Score = 31.7 bits (71), Expect = 0.006
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 8/63 (12%)

Query: 32  GKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQG--------KDLHQLLAD 83
            K+ L    +  G+ +G +V  ++GV     + E V  +  +         K   ++   
Sbjct: 188 AKYTLNQIRQLKGYKEGVYVKVREGVEDNELLHECVQSVSVEDVLNEGTYLKAWEKIACS 247

Query: 84  VYD 86
           V+D
Sbjct: 248 VFD 250


>d2ahob1 a.60.14.1 (B:85-175) Eukaryotic initiation factor 2alpha,
          eIF2alpha, domain 2 {Sulfolobus solfataricus [TaxId:
          2287]}
          Length = 91

 Score = 25.4 bits (56), Expect = 0.51
 Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 26 YDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVR 62
          + LE +    + A E+A+   +G  +L   GV     
Sbjct: 43 WKLEAKYGDPITAIEKAV--KEGEKILIDAGVPEIWV 77


>d1m0wa2 d.142.1.6 (A:6-210,A:324-491) Eukaryotic glutathione
           synthetase ATP-binding domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 373

 Score = 24.4 bits (53), Expect = 2.2
 Identities = 15/68 (22%), Positives = 23/68 (33%)

Query: 16  TGFKWMGTKTYDLEQEGKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGK 75
             F  +  K   L            +   + D   V+   G   +  +A+ V    SQ K
Sbjct: 147 VSFAGLSEKVDRLHSYLNRANKYDPKGPIYNDQNMVISDSGYLLSKALAKAVESYKSQQK 206

Query: 76  DLHQLLAD 83
            + QLL D
Sbjct: 207 KIQQLLTD 214


>d1w2ya_ a.204.1.1 (A:) Type II deoxyuridine triphosphatase
           {Campylobacter jejuni [TaxId: 197]}
          Length = 229

 Score = 24.3 bits (52), Expect = 2.5
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 32  GKHVLLAFEEAIGFMDGTHVLDKDGVTAAVRMAELVAYLDSQGKDLHQLLADVYDK 87
           GK+VL  F +  G+ DG++    +G      +A+++         +++ L + Y K
Sbjct: 174 GKNVLNIFRQNNGYKDGSYKKTWNGKEDNEVLAQILEQELDF-DTIYKKLEECYKK 228


>d2joea1 d.371.1.1 (A:2-131) Hypothetical lipoprotein YehR
          {Escherichia coli [TaxId: 562]}
          Length = 130

 Score = 23.2 bits (50), Expect = 4.2
 Identities = 2/18 (11%), Positives = 7/18 (38%)

Query: 23 TKTYDLEQEGKHVLLAFE 40
          +K +     G  + + + 
Sbjct: 6  SKKFSANLNGTEIAITYV 23


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0546    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 332,974
Number of extensions: 13058
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 11
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.3 bits)