Query psy160
Match_columns 346
No_of_seqs 283 out of 3143
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 18:21:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190|consensus 100.0 4.2E-40 9E-45 304.9 22.0 281 1-296 47-473 (493)
2 PTZ00102 disulphide isomerase; 100.0 6.8E-34 1.5E-38 275.0 28.8 289 1-297 54-466 (477)
3 KOG0191|consensus 100.0 1.3E-33 2.8E-38 264.5 17.3 269 1-272 52-355 (383)
4 TIGR01130 ER_PDI_fam protein d 100.0 9E-32 1.9E-36 259.2 29.3 289 1-299 23-457 (462)
5 KOG0190|consensus 100.0 1.5E-27 3.3E-32 221.5 16.9 230 76-314 14-253 (493)
6 KOG0191|consensus 99.9 3E-26 6.5E-31 214.8 17.2 204 89-297 31-253 (383)
7 TIGR02187 GlrX_arch Glutaredox 99.9 9.1E-25 2E-29 188.6 16.9 179 1-187 24-214 (215)
8 TIGR02187 GlrX_arch Glutaredox 99.9 2.8E-24 6E-29 185.6 17.0 173 104-281 19-204 (215)
9 KOG4277|consensus 99.9 6.9E-23 1.5E-27 175.1 16.7 260 1-277 48-330 (468)
10 TIGR01130 ER_PDI_fam protein d 99.9 2.3E-21 5E-26 186.8 20.1 220 88-314 2-233 (462)
11 KOG4277|consensus 99.9 5.1E-22 1.1E-26 169.8 12.3 212 86-311 27-246 (468)
12 PTZ00102 disulphide isomerase; 99.9 3.6E-20 7.7E-25 179.3 19.6 213 86-315 31-249 (477)
13 cd03006 PDI_a_EFP1_N PDIa fami 99.8 7.6E-20 1.7E-24 140.5 10.9 97 87-185 9-113 (113)
14 KOG0912|consensus 99.8 2.7E-19 5.8E-24 153.5 13.9 220 92-326 1-233 (375)
15 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 6.8E-19 1.5E-23 133.6 11.1 96 88-185 2-101 (101)
16 cd02996 PDI_a_ERp44 PDIa famil 99.8 2.1E-18 4.5E-23 132.6 10.9 97 88-185 2-108 (108)
17 cd03007 PDI_a_ERp29_N PDIa fam 99.8 2.8E-18 6E-23 131.0 11.0 95 88-188 2-115 (116)
18 PF00085 Thioredoxin: Thioredo 99.8 3.7E-18 7.9E-23 129.8 11.3 98 89-188 1-103 (103)
19 cd03006 PDI_a_EFP1_N PDIa fami 99.8 3.1E-18 6.7E-23 131.5 10.7 91 192-283 9-107 (113)
20 cd02994 PDI_a_TMX PDIa family, 99.8 4.3E-18 9.4E-23 129.2 11.3 97 88-187 2-101 (101)
21 KOG0912|consensus 99.8 9.3E-18 2E-22 144.1 14.3 224 1-239 18-255 (375)
22 cd03004 PDI_a_ERdj5_C PDIa fam 99.7 1.3E-17 2.8E-22 127.3 11.1 97 88-185 2-104 (104)
23 KOG0910|consensus 99.7 1.3E-17 2.8E-22 130.6 9.2 98 193-294 44-146 (150)
24 cd03003 PDI_a_ERdj5_N PDIa fam 99.7 2.8E-17 6E-22 124.7 10.1 89 193-282 2-94 (101)
25 cd02993 PDI_a_APS_reductase PD 99.7 9.5E-17 2.1E-21 123.5 11.1 97 88-185 2-109 (109)
26 cd03065 PDI_b_Calsequestrin_N 99.7 8.5E-17 1.8E-21 124.4 10.3 103 85-188 7-118 (120)
27 cd02996 PDI_a_ERp44 PDIa famil 99.7 1.1E-16 2.3E-21 123.0 10.6 90 193-282 2-101 (108)
28 cd02994 PDI_a_TMX PDIa family, 99.7 1.4E-16 2.9E-21 120.9 10.7 95 193-292 2-99 (101)
29 cd03002 PDI_a_MPD1_like PDI fa 99.7 1.8E-16 3.9E-21 121.9 10.9 96 89-186 2-109 (109)
30 PTZ00443 Thioredoxin domain-co 99.7 2.4E-16 5.1E-21 135.2 12.2 102 86-189 29-139 (224)
31 PF00085 Thioredoxin: Thioredo 99.7 2.4E-16 5.2E-21 119.8 10.7 96 194-293 1-101 (103)
32 cd03005 PDI_a_ERp46 PDIa famil 99.7 2.4E-16 5.1E-21 119.7 10.5 95 89-185 2-102 (102)
33 cd03001 PDI_a_P5 PDIa family, 99.7 3.6E-16 7.8E-21 118.9 11.4 95 89-185 2-102 (103)
34 cd03065 PDI_b_Calsequestrin_N 99.7 1.7E-16 3.6E-21 122.8 9.4 98 192-293 9-116 (120)
35 cd02963 TRX_DnaJ TRX domain, D 99.7 2.6E-16 5.5E-21 121.4 10.5 97 90-187 7-110 (111)
36 cd03004 PDI_a_ERdj5_C PDIa fam 99.7 2.6E-16 5.7E-21 120.0 10.4 88 193-281 2-95 (104)
37 cd02954 DIM1 Dim1 family; Dim1 99.7 3.5E-16 7.7E-21 119.1 10.9 82 199-281 2-89 (114)
38 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 6.4E-16 1.4E-20 117.7 10.6 97 88-185 1-104 (104)
39 cd02999 PDI_a_ERp44_like PDIa 99.7 5.5E-16 1.2E-20 117.1 9.1 80 103-185 17-100 (100)
40 cd02997 PDI_a_PDIR PDIa family 99.7 1E-15 2.2E-20 116.6 10.7 96 89-185 2-104 (104)
41 cd02948 TRX_NDPK TRX domain, T 99.7 1.5E-15 3.3E-20 115.3 11.4 94 92-187 5-101 (102)
42 TIGR01126 pdi_dom protein disu 99.7 1.1E-15 2.4E-20 115.9 10.6 96 92-188 1-101 (102)
43 KOG0910|consensus 99.6 9E-16 1.9E-20 120.3 9.6 99 88-188 44-147 (150)
44 PHA02278 thioredoxin-like prot 99.6 1.7E-15 3.7E-20 114.4 10.6 83 198-281 3-93 (103)
45 PHA02278 thioredoxin-like prot 99.6 1.8E-15 4E-20 114.3 10.7 91 93-184 3-100 (103)
46 PTZ00062 glutaredoxin; Provisi 99.6 1.1E-14 2.5E-19 122.8 15.8 169 92-280 4-182 (204)
47 cd02948 TRX_NDPK TRX domain, T 99.6 4.3E-15 9.3E-20 112.8 11.6 84 196-279 4-89 (102)
48 cd03000 PDI_a_TMX3 PDIa family 99.6 2.1E-15 4.6E-20 115.0 9.6 93 94-188 6-103 (104)
49 PRK10996 thioredoxin 2; Provis 99.6 5.3E-15 1.1E-19 118.6 12.2 99 88-188 36-138 (139)
50 cd03002 PDI_a_MPD1_like PDI fa 99.6 2.2E-15 4.7E-20 115.9 9.2 88 194-282 2-101 (109)
51 PRK09381 trxA thioredoxin; Pro 99.6 5.4E-15 1.2E-19 113.7 11.4 101 86-188 2-107 (109)
52 COG3118 Thioredoxin domain-con 99.6 1.8E-15 3.8E-20 131.2 9.1 100 192-295 23-129 (304)
53 cd02999 PDI_a_ERp44_like PDIa 99.6 1.6E-15 3.5E-20 114.5 7.3 74 1-77 23-100 (100)
54 cd02998 PDI_a_ERp38 PDIa famil 99.6 4.9E-15 1.1E-19 112.9 10.0 96 89-185 2-105 (105)
55 TIGR00424 APS_reduc 5'-adenyly 99.6 6.7E-15 1.5E-19 138.4 12.7 102 85-187 349-461 (463)
56 cd02956 ybbN ybbN protein fami 99.6 6.4E-15 1.4E-19 110.6 10.2 89 96-186 2-96 (96)
57 COG3118 Thioredoxin domain-con 99.6 5.3E-15 1.1E-19 128.2 10.9 102 88-191 24-132 (304)
58 cd03007 PDI_a_ERp29_N PDIa fam 99.6 3.8E-15 8.2E-20 113.8 8.8 93 194-294 3-114 (116)
59 cd03005 PDI_a_ERp46 PDIa famil 99.6 7E-15 1.5E-19 111.6 10.3 88 194-282 2-95 (102)
60 cd03001 PDI_a_P5 PDIa family, 99.6 6.6E-15 1.4E-19 111.9 10.1 88 194-282 2-95 (103)
61 PLN02309 5'-adenylylsulfate re 99.6 6.9E-15 1.5E-19 138.3 12.3 103 85-188 343-456 (457)
62 cd02961 PDI_a_family Protein D 99.6 1E-14 2.2E-19 110.0 10.6 94 91-185 2-101 (101)
63 cd02963 TRX_DnaJ TRX domain, D 99.6 8.3E-15 1.8E-19 112.9 10.1 95 196-293 8-109 (111)
64 cd02962 TMX2 TMX2 family; comp 99.6 1.4E-14 3E-19 117.0 11.5 91 83-173 24-126 (152)
65 cd02993 PDI_a_APS_reductase PD 99.6 1E-14 2.2E-19 112.2 10.3 89 193-281 2-101 (109)
66 PTZ00443 Thioredoxin domain-co 99.6 1E-14 2.2E-19 125.2 11.3 90 191-281 29-127 (224)
67 cd02954 DIM1 Dim1 family; Dim1 99.6 1.1E-14 2.3E-19 111.0 10.0 81 94-175 2-88 (114)
68 cd02985 TRX_CDSP32 TRX family, 99.6 1.5E-14 3.3E-19 109.9 10.8 90 93-186 2-100 (103)
69 cd02965 HyaE HyaE family; HyaE 99.6 1.5E-14 3.3E-19 109.3 9.8 90 88-178 11-106 (111)
70 cd02956 ybbN ybbN protein fami 99.6 1.9E-14 4.1E-19 108.0 10.0 80 201-281 2-87 (96)
71 cd02962 TMX2 TMX2 family; comp 99.6 3.6E-14 7.7E-19 114.6 12.1 87 192-278 28-126 (152)
72 cd02992 PDI_a_QSOX PDIa family 99.6 3.2E-14 6.9E-19 110.1 11.4 88 88-175 2-102 (114)
73 cd02997 PDI_a_PDIR PDIa family 99.6 2.2E-14 4.7E-19 109.2 10.3 88 194-281 2-96 (104)
74 PF13848 Thioredoxin_6: Thiore 99.6 5.3E-13 1.1E-17 112.4 19.6 167 13-187 7-184 (184)
75 cd02995 PDI_a_PDI_a'_C PDIa fa 99.6 2.1E-14 4.6E-19 109.2 9.8 88 194-281 2-96 (104)
76 PF01216 Calsequestrin: Calseq 99.6 4.7E-13 1E-17 117.8 19.3 235 84-331 31-278 (383)
77 PRK10996 thioredoxin 2; Provis 99.6 4E-14 8.8E-19 113.5 11.7 97 193-293 36-136 (139)
78 cd02985 TRX_CDSP32 TRX family, 99.6 3.1E-14 6.8E-19 108.2 10.4 81 198-280 2-91 (103)
79 cd02965 HyaE HyaE family; HyaE 99.6 3.2E-14 6.9E-19 107.6 10.0 88 193-281 11-104 (111)
80 PRK09381 trxA thioredoxin; Pro 99.6 4.6E-14 1E-18 108.5 10.8 88 193-281 4-96 (109)
81 cd02957 Phd_like Phosducin (Ph 99.6 4.3E-14 9.3E-19 109.4 10.6 85 192-279 4-95 (113)
82 cd02986 DLP Dim1 family, Dim1- 99.5 5.3E-14 1.2E-18 106.2 10.4 77 199-276 2-83 (114)
83 cd02957 Phd_like Phosducin (Ph 99.5 4.2E-14 9.2E-19 109.4 9.4 85 87-173 4-94 (113)
84 cd02989 Phd_like_TxnDC9 Phosdu 99.5 7.4E-14 1.6E-18 107.8 10.7 85 193-279 5-94 (113)
85 cd03000 PDI_a_TMX3 PDIa family 99.5 3.7E-14 7.9E-19 108.1 8.6 91 200-294 7-102 (104)
86 cd02953 DsbDgamma DsbD gamma f 99.5 5.5E-14 1.2E-18 107.1 9.3 89 95-185 2-103 (104)
87 TIGR01126 pdi_dom protein disu 99.5 5.7E-14 1.2E-18 106.4 9.1 94 197-293 1-99 (102)
88 TIGR01068 thioredoxin thioredo 99.5 1.5E-13 3.2E-18 103.8 11.0 95 92-188 1-100 (101)
89 cd02984 TRX_PICOT TRX domain, 99.5 1.4E-13 3E-18 103.4 10.7 90 93-185 1-96 (97)
90 PTZ00062 glutaredoxin; Provisi 99.5 7.1E-14 1.5E-18 118.0 9.9 142 1-162 22-174 (204)
91 cd02989 Phd_like_TxnDC9 Phosdu 99.5 1.4E-13 3E-18 106.3 10.3 81 87-169 4-88 (113)
92 PF01216 Calsequestrin: Calseq 99.5 2.8E-11 6.1E-16 106.7 25.8 240 18-269 79-337 (383)
93 cd02984 TRX_PICOT TRX domain, 99.5 2.1E-13 4.7E-18 102.4 11.0 81 198-279 1-87 (97)
94 cd02998 PDI_a_ERp38 PDIa famil 99.5 9.8E-14 2.1E-18 105.7 9.0 88 194-281 2-97 (105)
95 TIGR00424 APS_reduc 5'-adenyly 99.5 1.9E-13 4.2E-18 128.6 11.2 101 191-294 350-461 (463)
96 cd02992 PDI_a_QSOX PDIa family 99.5 2.2E-13 4.7E-18 105.4 9.5 80 193-272 2-89 (114)
97 cd02961 PDI_a_family Protein D 99.5 2.1E-13 4.5E-18 102.7 9.0 86 196-281 2-93 (101)
98 PTZ00051 thioredoxin; Provisio 99.5 7.2E-13 1.6E-17 99.7 11.1 83 196-280 5-91 (98)
99 PLN02309 5'-adenylylsulfate re 99.5 3.4E-13 7.3E-18 127.0 11.0 101 191-294 344-455 (457)
100 KOG0907|consensus 99.5 4.5E-13 9.7E-18 101.3 9.2 71 208-280 20-94 (106)
101 PTZ00051 thioredoxin; Provisio 99.4 6.8E-13 1.5E-17 99.9 10.0 85 90-176 3-92 (98)
102 PLN00410 U5 snRNP protein, DIM 99.4 7.9E-13 1.7E-17 104.7 10.7 81 197-278 9-97 (142)
103 cd02950 TxlA TRX-like protein 99.4 6.8E-13 1.5E-17 106.7 10.3 95 94-189 10-110 (142)
104 PF13848 Thioredoxin_6: Thiore 99.4 9.8E-12 2.1E-16 104.7 17.8 144 121-269 7-159 (184)
105 TIGR01295 PedC_BrcD bacterioci 99.4 1.4E-12 3E-17 101.9 11.6 98 88-186 7-121 (122)
106 TIGR01068 thioredoxin thioredo 99.4 1.4E-12 3.1E-17 98.3 10.0 93 197-293 1-98 (101)
107 cd02953 DsbDgamma DsbD gamma f 99.4 5.4E-13 1.2E-17 101.6 7.6 82 200-282 2-96 (104)
108 cd02987 Phd_like_Phd Phosducin 99.4 2.7E-12 5.8E-17 106.7 12.0 82 192-275 62-149 (175)
109 KOG1731|consensus 99.4 4.6E-13 1E-17 125.0 7.8 182 85-274 37-249 (606)
110 cd02949 TRX_NTR TRX domain, no 99.4 2.1E-12 4.6E-17 97.0 9.9 85 100-186 9-97 (97)
111 KOG0907|consensus 99.4 2.4E-12 5.3E-17 97.3 9.9 79 104-186 21-103 (106)
112 cd02986 DLP Dim1 family, Dim1- 99.4 2.3E-12 4.9E-17 97.4 9.1 76 94-170 2-82 (114)
113 cd02950 TxlA TRX-like protein 99.4 2.3E-12 5E-17 103.6 9.4 95 200-295 11-113 (142)
114 PLN00410 U5 snRNP protein, DIM 99.4 4.9E-12 1.1E-16 100.2 11.0 80 93-173 10-97 (142)
115 cd02949 TRX_NTR TRX domain, no 99.4 5.5E-12 1.2E-16 94.7 10.5 76 205-281 9-88 (97)
116 cd02975 PfPDO_like_N Pyrococcu 99.4 4.1E-12 8.9E-17 98.1 9.7 88 97-187 15-108 (113)
117 cd02947 TRX_family TRX family; 99.3 7.8E-12 1.7E-16 92.3 9.8 87 96-185 2-92 (93)
118 cd02987 Phd_like_Phd Phosducin 99.3 7.4E-12 1.6E-16 104.1 9.2 82 86-169 61-148 (175)
119 cd02975 PfPDO_like_N Pyrococcu 99.3 1.2E-11 2.7E-16 95.4 9.7 78 202-281 15-98 (113)
120 cd02988 Phd_like_VIAF Phosduci 99.3 1.7E-11 3.7E-16 103.3 10.9 86 191-278 81-170 (192)
121 cd02988 Phd_like_VIAF Phosduci 99.3 2.5E-11 5.5E-16 102.2 11.4 83 85-169 80-165 (192)
122 cd02982 PDI_b'_family Protein 99.3 2.9E-11 6.3E-16 91.8 10.7 90 96-187 4-101 (103)
123 TIGR00412 redox_disulf_2 small 99.3 1.8E-11 3.9E-16 87.4 8.1 73 1-77 3-75 (76)
124 TIGR01295 PedC_BrcD bacterioci 99.3 4.8E-11 1E-15 93.2 10.3 86 194-280 8-110 (122)
125 KOG0908|consensus 99.2 3E-11 6.6E-16 101.6 9.0 84 194-279 4-93 (288)
126 cd02947 TRX_family TRX family; 99.2 6E-11 1.3E-15 87.5 9.7 79 201-281 2-84 (93)
127 cd02952 TRP14_like Human TRX-r 99.2 5.2E-11 1.1E-15 91.9 8.9 76 197-273 7-102 (119)
128 KOG0908|consensus 99.2 6.2E-11 1.4E-15 99.8 9.7 97 89-189 3-106 (288)
129 KOG1731|consensus 99.2 3.7E-11 7.9E-16 112.5 9.1 160 1-169 62-249 (606)
130 cd02951 SoxW SoxW family; SoxW 99.2 1E-10 2.2E-15 92.2 10.2 92 95-188 4-118 (125)
131 TIGR00412 redox_disulf_2 small 99.2 7.9E-11 1.7E-15 84.0 8.2 73 109-185 3-75 (76)
132 cd02982 PDI_b'_family Protein 99.2 1E-10 2.2E-15 88.7 8.4 70 209-279 12-88 (103)
133 cd02951 SoxW SoxW family; SoxW 99.2 1.4E-10 3E-15 91.4 9.1 81 200-281 4-107 (125)
134 TIGR00411 redox_disulf_1 small 99.2 2.7E-10 5.9E-15 82.5 9.0 76 107-187 2-80 (82)
135 cd02952 TRP14_like Human TRX-r 99.1 2.5E-10 5.5E-15 88.1 8.3 74 93-167 8-101 (119)
136 TIGR03143 AhpF_homolog putativ 99.1 2E-09 4.4E-14 106.0 16.0 177 2-185 372-554 (555)
137 TIGR00411 redox_disulf_1 small 99.1 7.2E-10 1.6E-14 80.3 8.5 65 213-281 3-70 (82)
138 cd02959 ERp19 Endoplasmic reti 99.1 5.8E-10 1.3E-14 86.5 7.6 74 200-273 10-89 (117)
139 cd02959 ERp19 Endoplasmic reti 99.0 2.1E-09 4.6E-14 83.4 8.9 75 94-168 9-89 (117)
140 TIGR03143 AhpF_homolog putativ 98.9 2.4E-08 5.3E-13 98.4 16.0 171 105-281 367-546 (555)
141 PHA02125 thioredoxin-like prot 98.9 5.3E-09 1.1E-13 74.4 7.7 56 1-66 3-62 (75)
142 PHA02125 thioredoxin-like prot 98.9 7.7E-09 1.7E-13 73.5 8.0 57 108-174 2-62 (75)
143 PF13098 Thioredoxin_2: Thiore 98.9 4.6E-09 1E-13 80.9 7.2 81 103-185 4-112 (112)
144 PRK00293 dipZ thiol:disulfide 98.9 1.4E-08 3.1E-13 99.8 10.8 93 93-188 459-569 (571)
145 cd02955 SSP411 TRX domain, SSP 98.8 2.5E-08 5.5E-13 77.8 8.9 76 198-274 4-94 (124)
146 cd02973 TRX_GRX_like Thioredox 98.8 3.6E-08 7.7E-13 68.4 8.0 61 213-278 3-66 (67)
147 cd02955 SSP411 TRX domain, SSP 98.8 4.6E-08 1E-12 76.3 9.5 77 92-169 3-94 (124)
148 cd02973 TRX_GRX_like Thioredox 98.8 1.8E-08 3.9E-13 69.9 6.3 54 107-162 2-58 (67)
149 PRK14018 trifunctional thiored 98.8 2.5E-08 5.5E-13 95.5 8.5 86 102-188 54-172 (521)
150 KOG0913|consensus 98.7 3.3E-09 7.2E-14 88.8 1.8 117 193-314 25-144 (248)
151 TIGR02740 TraF-like TraF-like 98.7 5.3E-08 1.1E-12 86.7 9.5 85 104-190 166-265 (271)
152 PRK00293 dipZ thiol:disulfide 98.7 3.1E-08 6.8E-13 97.4 8.6 82 198-281 459-558 (571)
153 cd03008 TryX_like_RdCVF Trypar 98.7 4.6E-08 1E-12 78.4 8.0 69 208-276 24-128 (146)
154 PF13098 Thioredoxin_2: Thiore 98.7 2.8E-08 6E-13 76.5 6.6 75 207-282 3-105 (112)
155 cd02967 mauD Methylamine utili 98.7 6.5E-08 1.4E-12 74.6 8.4 57 208-265 20-82 (114)
156 TIGR02738 TrbB type-F conjugat 98.7 1.9E-07 4.2E-12 75.7 11.5 85 101-187 47-151 (153)
157 cd03009 TryX_like_TryX_NRX Try 98.7 5.9E-08 1.3E-12 76.9 8.1 67 208-274 17-113 (131)
158 PRK03147 thiol-disulfide oxido 98.7 9.4E-08 2E-12 79.6 9.1 85 103-188 60-171 (173)
159 PRK14018 trifunctional thiored 98.7 3.7E-08 8E-13 94.4 7.3 123 207-335 54-213 (521)
160 cd03011 TlpA_like_ScsD_MtbDsbE 98.7 8.7E-08 1.9E-12 75.0 8.2 81 102-183 18-120 (123)
161 PF13905 Thioredoxin_8: Thiore 98.7 9.6E-08 2.1E-12 71.1 8.0 62 209-270 1-91 (95)
162 cd02964 TryX_like_family Trypa 98.7 9E-08 2E-12 76.0 8.2 71 208-278 16-117 (132)
163 KOG0913|consensus 98.7 8.4E-09 1.8E-13 86.5 2.3 104 82-188 19-125 (248)
164 cd03026 AhpF_NTD_C TRX-GRX-lik 98.7 1.4E-07 3.1E-12 69.2 8.0 75 104-182 12-87 (89)
165 KOG0914|consensus 98.6 3.3E-08 7.2E-13 81.8 5.0 85 84-168 121-217 (265)
166 cd03009 TryX_like_TryX_NRX Try 98.6 1E-07 2.2E-12 75.5 7.5 66 103-168 17-112 (131)
167 cd03008 TryX_like_RdCVF Trypar 98.6 1.1E-07 2.4E-12 76.3 7.6 68 103-170 24-127 (146)
168 PRK15317 alkyl hydroperoxide r 98.6 9.5E-07 2.1E-11 86.5 15.6 167 3-188 25-197 (517)
169 cd02964 TryX_like_family Trypa 98.6 1.6E-07 3.5E-12 74.5 7.6 67 103-169 16-113 (132)
170 PRK11509 hydrogenase-1 operon 98.6 4E-07 8.8E-12 71.1 9.6 99 91-190 21-125 (132)
171 TIGR02740 TraF-like TraF-like 98.6 2.4E-07 5.2E-12 82.5 8.7 72 209-281 166-252 (271)
172 PF13905 Thioredoxin_8: Thiore 98.6 3E-07 6.5E-12 68.4 7.9 62 104-165 1-91 (95)
173 KOG0914|consensus 98.6 9E-08 1.9E-12 79.3 5.3 84 191-274 123-218 (265)
174 PRK15317 alkyl hydroperoxide r 98.6 6.5E-06 1.4E-10 80.7 19.4 160 105-281 20-186 (517)
175 TIGR00385 dsbE periplasmic pro 98.6 3.8E-07 8.3E-12 76.0 9.0 83 103-188 62-170 (173)
176 cd02967 mauD Methylamine utili 98.6 2.9E-07 6.2E-12 71.0 7.6 57 103-160 20-82 (114)
177 cd03010 TlpA_like_DsbE TlpA-li 98.5 3E-07 6.6E-12 72.4 7.8 73 103-176 24-122 (127)
178 PRK03147 thiol-disulfide oxido 98.5 3.7E-07 8.1E-12 75.9 8.3 75 208-282 60-161 (173)
179 TIGR02738 TrbB type-F conjugat 98.5 3.5E-07 7.6E-12 74.2 7.8 76 1-78 55-150 (153)
180 cd03026 AhpF_NTD_C TRX-GRX-lik 98.5 6.4E-07 1.4E-11 65.7 8.1 66 210-280 13-81 (89)
181 cd02966 TlpA_like_family TlpA- 98.5 3.1E-07 6.8E-12 70.2 6.5 64 104-167 19-109 (116)
182 PRK15412 thiol:disulfide inter 98.5 8.5E-07 1.9E-11 74.7 9.4 82 103-187 67-174 (185)
183 PRK11509 hydrogenase-1 operon 98.5 1.3E-06 2.8E-11 68.3 9.6 98 180-281 9-112 (132)
184 cd03011 TlpA_like_ScsD_MtbDsbE 98.5 4.9E-07 1.1E-11 70.7 7.2 72 208-281 19-114 (123)
185 cd03010 TlpA_like_DsbE TlpA-li 98.5 9.3E-07 2E-11 69.6 8.5 70 209-281 25-122 (127)
186 TIGR03140 AhpF alkyl hydropero 98.4 6.9E-06 1.5E-10 80.4 15.6 167 4-188 26-198 (515)
187 PF13899 Thioredoxin_7: Thiore 98.4 6.5E-07 1.4E-11 64.7 6.3 69 200-269 8-81 (82)
188 PLN02919 haloacid dehalogenase 98.4 9.2E-07 2E-11 92.9 9.6 85 103-188 419-535 (1057)
189 cd02966 TlpA_like_family TlpA- 98.4 1.6E-06 3.5E-11 66.2 8.5 65 209-273 19-110 (116)
190 cd03012 TlpA_like_DipZ_like Tl 98.4 1.7E-06 3.6E-11 68.1 8.4 65 103-167 22-117 (126)
191 PRK15412 thiol:disulfide inter 98.4 1.6E-06 3.4E-11 73.1 8.3 71 208-282 67-165 (185)
192 cd03012 TlpA_like_DipZ_like Tl 98.4 2.4E-06 5.1E-11 67.2 8.8 65 208-272 22-117 (126)
193 TIGR00385 dsbE periplasmic pro 98.4 2E-06 4.4E-11 71.6 8.7 70 208-281 62-159 (173)
194 PLN02919 haloacid dehalogenase 98.3 1.8E-06 4E-11 90.7 9.2 74 208-281 419-524 (1057)
195 cd02958 UAS UAS family; UAS is 98.3 7.6E-06 1.7E-10 63.1 10.2 90 97-188 10-110 (114)
196 COG4232 Thiol:disulfide interc 98.3 2.2E-06 4.9E-11 81.8 7.9 98 90-188 457-567 (569)
197 PF13192 Thioredoxin_3: Thiore 98.3 3.6E-06 7.8E-11 59.8 7.2 73 2-78 4-76 (76)
198 TIGR02661 MauD methylamine deh 98.3 6E-06 1.3E-10 69.8 9.8 83 103-186 73-176 (189)
199 cd02960 AGR Anterior Gradient 98.3 4.3E-06 9.4E-11 65.3 8.2 68 202-272 16-91 (130)
200 smart00594 UAS UAS domain. 98.3 9.9E-06 2.1E-10 63.3 10.3 86 98-185 21-121 (122)
201 cd02981 PDI_b_family Protein D 98.3 1.4E-05 3E-10 59.6 10.3 89 93-187 6-96 (97)
202 PRK13728 conjugal transfer pro 98.2 7.2E-06 1.6E-10 67.9 9.2 79 108-188 73-170 (181)
203 PF13899 Thioredoxin_7: Thiore 98.2 5.1E-06 1.1E-10 60.0 7.2 69 95-164 8-81 (82)
204 PF08534 Redoxin: Redoxin; In 98.2 6.5E-06 1.4E-10 66.4 8.4 67 208-274 27-128 (146)
205 PRK13728 conjugal transfer pro 98.2 5.8E-06 1.2E-10 68.4 8.0 74 1-78 74-168 (181)
206 cd02958 UAS UAS family; UAS is 98.2 1.1E-05 2.4E-10 62.2 8.7 78 203-281 11-99 (114)
207 TIGR03140 AhpF alkyl hydropero 98.1 7.9E-05 1.7E-09 73.0 15.6 161 105-281 20-187 (515)
208 smart00594 UAS UAS domain. 98.1 1.7E-05 3.8E-10 61.9 8.5 66 203-269 21-94 (122)
209 TIGR02661 MauD methylamine deh 98.1 1.5E-05 3.2E-10 67.4 8.5 71 208-280 73-165 (189)
210 PF13192 Thioredoxin_3: Thiore 98.1 2.4E-05 5.1E-10 55.6 8.3 73 110-186 4-76 (76)
211 cd02981 PDI_b_family Protein D 98.1 2.3E-05 4.9E-10 58.4 8.6 88 198-293 6-95 (97)
212 PF08534 Redoxin: Redoxin; In 98.1 1.9E-05 4E-10 63.7 8.1 65 103-167 27-126 (146)
213 cd02960 AGR Anterior Gradient 98.0 2.1E-05 4.6E-10 61.5 7.7 71 94-167 13-91 (130)
214 KOG2501|consensus 98.0 6.1E-06 1.3E-10 65.8 3.7 67 103-169 32-129 (157)
215 TIGR02196 GlrX_YruB Glutaredox 98.0 3E-05 6.5E-10 54.2 7.0 68 108-186 2-74 (74)
216 cd03067 PDI_b_PDIR_N PDIb fami 98.0 6.3E-05 1.4E-09 54.8 8.4 98 89-188 3-111 (112)
217 KOG2501|consensus 97.9 5.6E-06 1.2E-10 66.1 2.2 65 1-65 38-133 (157)
218 PF00578 AhpC-TSA: AhpC/TSA fa 97.9 7.6E-05 1.6E-09 58.2 8.7 69 208-276 24-123 (124)
219 TIGR02196 GlrX_YruB Glutaredox 97.9 1.2E-05 2.5E-10 56.4 3.5 63 2-77 4-73 (74)
220 KOG0911|consensus 97.9 0.00013 2.7E-09 61.5 10.1 174 94-280 9-208 (227)
221 PF00578 AhpC-TSA: AhpC/TSA fa 97.9 5.3E-05 1.2E-09 59.0 7.6 68 103-170 24-122 (124)
222 cd02969 PRX_like1 Peroxiredoxi 97.9 7.2E-05 1.6E-09 62.1 8.7 71 208-278 24-126 (171)
223 PF02114 Phosducin: Phosducin; 97.9 0.00011 2.3E-09 65.1 10.1 81 192-274 125-211 (265)
224 COG0526 TrxA Thiol-disulfide i 97.9 4.5E-05 9.8E-10 58.0 6.5 64 209-273 32-101 (127)
225 COG4232 Thiol:disulfide interc 97.8 2.3E-05 5.1E-10 75.0 5.4 77 196-272 458-546 (569)
226 COG2143 Thioredoxin-related pr 97.8 0.00014 3E-09 57.5 8.6 92 95-187 33-150 (182)
227 PF14595 Thioredoxin_9: Thiore 97.8 6.9E-05 1.5E-09 58.9 7.1 86 197-282 28-119 (129)
228 PF07912 ERp29_N: ERp29, N-ter 97.8 0.00049 1.1E-08 52.4 11.1 97 88-189 5-119 (126)
229 KOG1672|consensus 97.8 9.4E-05 2E-09 60.6 7.5 79 197-277 72-153 (211)
230 cd02969 PRX_like1 Peroxiredoxi 97.8 0.00011 2.5E-09 60.9 8.2 71 103-173 24-126 (171)
231 cd01659 TRX_superfamily Thiore 97.8 9.2E-05 2E-09 49.5 6.5 57 108-166 1-63 (69)
232 COG0526 TrxA Thiol-disulfide i 97.8 7.7E-05 1.7E-09 56.7 6.7 65 104-168 32-101 (127)
233 PF06110 DUF953: Eukaryotic pr 97.8 0.00024 5.1E-09 54.7 9.0 73 200-273 6-101 (119)
234 cd01659 TRX_superfamily Thiore 97.8 0.00012 2.6E-09 48.9 6.7 57 213-271 1-63 (69)
235 PF13728 TraF: F plasmid trans 97.7 0.0002 4.4E-09 61.6 9.3 78 104-183 120-212 (215)
236 PF02114 Phosducin: Phosducin; 97.7 0.00014 3E-09 64.4 8.5 101 86-188 124-237 (265)
237 COG2143 Thioredoxin-related pr 97.7 0.00015 3.3E-09 57.2 7.3 92 203-295 36-151 (182)
238 TIGR02200 GlrX_actino Glutared 97.7 0.00012 2.6E-09 51.7 6.1 54 108-167 2-61 (77)
239 TIGR02200 GlrX_actino Glutared 97.6 0.00012 2.7E-09 51.7 5.6 56 213-274 2-63 (77)
240 PTZ00056 glutathione peroxidas 97.6 0.00031 6.7E-09 59.8 9.0 41 103-143 38-78 (199)
241 PF07912 ERp29_N: ERp29, N-ter 97.6 0.0011 2.4E-08 50.5 10.8 98 194-296 6-119 (126)
242 cd03072 PDI_b'_ERp44 PDIb' fam 97.6 0.0005 1.1E-08 52.6 9.2 97 89-189 1-108 (111)
243 PF14595 Thioredoxin_9: Thiore 97.6 0.00019 4E-09 56.5 6.6 85 92-176 28-118 (129)
244 PLN02399 phospholipid hydroper 97.6 0.0005 1.1E-08 59.8 9.7 40 103-142 98-137 (236)
245 cd02970 PRX_like2 Peroxiredoxi 97.6 0.00042 9.1E-09 55.8 8.8 40 209-248 24-63 (149)
246 PRK10877 protein disulfide iso 97.6 0.00063 1.4E-08 59.3 10.2 78 105-188 108-230 (232)
247 KOG0911|consensus 97.6 0.00089 1.9E-08 56.5 10.2 162 1-176 22-209 (227)
248 PLN02412 probable glutathione 97.6 0.00036 7.9E-09 57.6 8.0 41 103-143 28-68 (167)
249 KOG1672|consensus 97.6 0.00038 8.1E-09 57.2 7.7 84 86-171 65-152 (211)
250 PTZ00056 glutathione peroxidas 97.5 0.00032 6.8E-09 59.7 7.3 35 1-35 44-78 (199)
251 cd03017 PRX_BCP Peroxiredoxin 97.5 0.00058 1.3E-08 54.4 8.3 72 104-175 23-130 (140)
252 cd02970 PRX_like2 Peroxiredoxi 97.5 0.00053 1.2E-08 55.1 7.9 39 105-143 24-63 (149)
253 TIGR02180 GRX_euk Glutaredoxin 97.5 0.00043 9.4E-09 49.8 6.6 56 213-273 1-64 (84)
254 TIGR02180 GRX_euk Glutaredoxin 97.5 0.0003 6.6E-09 50.6 5.6 55 108-167 1-63 (84)
255 cd03069 PDI_b_ERp57 PDIb famil 97.5 0.0019 4.2E-08 48.7 10.2 89 93-188 7-103 (104)
256 TIGR01626 ytfJ_HI0045 conserve 97.5 0.00065 1.4E-08 56.6 8.1 80 103-183 58-174 (184)
257 cd02983 P5_C P5 family, C-term 97.4 0.0019 4.2E-08 50.9 10.3 99 194-295 4-114 (130)
258 KOG3425|consensus 97.4 0.001 2.2E-08 50.3 8.0 70 200-270 13-104 (128)
259 TIGR01626 ytfJ_HI0045 conserve 97.4 0.00037 8E-09 58.1 6.3 75 209-283 59-170 (184)
260 TIGR02739 TraF type-F conjugat 97.4 0.0012 2.6E-08 58.0 9.4 81 105-187 151-246 (256)
261 PF13728 TraF: F plasmid trans 97.4 0.00071 1.5E-08 58.2 7.8 62 209-271 120-193 (215)
262 PF06110 DUF953: Eukaryotic pr 97.4 0.00073 1.6E-08 52.0 7.0 71 95-166 6-99 (119)
263 cd03017 PRX_BCP Peroxiredoxin 97.4 0.00091 2E-08 53.2 7.9 40 209-248 23-63 (140)
264 cd03066 PDI_b_Calsequestrin_mi 97.4 0.0039 8.4E-08 46.9 10.9 95 89-189 2-101 (102)
265 KOG3414|consensus 97.4 0.0014 3E-08 49.9 8.1 78 198-275 10-91 (142)
266 PF03190 Thioredox_DsbH: Prote 97.4 0.00053 1.2E-08 55.7 6.3 91 182-274 9-116 (163)
267 cd03069 PDI_b_ERp57 PDIb famil 97.4 0.0013 2.7E-08 49.8 8.0 88 198-294 7-102 (104)
268 PF11009 DUF2847: Protein of u 97.3 0.0021 4.6E-08 48.1 8.2 78 197-274 5-91 (105)
269 PRK11200 grxA glutaredoxin 1; 97.3 0.0012 2.6E-08 47.8 6.9 74 107-188 2-82 (85)
270 cd03066 PDI_b_Calsequestrin_mi 97.3 0.0028 6E-08 47.7 8.9 90 198-295 7-100 (102)
271 cd00340 GSH_Peroxidase Glutath 97.2 0.00061 1.3E-08 55.3 5.5 39 209-248 22-60 (152)
272 PRK13703 conjugal pilus assemb 97.2 0.0023 5.1E-08 55.8 9.3 81 105-187 144-239 (248)
273 cd00340 GSH_Peroxidase Glutath 97.2 0.00058 1.3E-08 55.5 5.0 41 103-144 21-61 (152)
274 KOG3425|consensus 97.2 0.0023 5.1E-08 48.3 7.7 70 95-165 13-104 (128)
275 cd03073 PDI_b'_ERp72_ERp57 PDI 97.2 0.0044 9.5E-08 47.4 9.5 95 90-188 2-110 (111)
276 cd02983 P5_C P5 family, C-term 97.1 0.0066 1.4E-07 47.8 10.3 102 88-190 3-116 (130)
277 PF07449 HyaE: Hydrogenase-1 e 97.1 0.0028 6E-08 47.7 7.6 83 193-276 10-97 (107)
278 TIGR02540 gpx7 putative glutat 97.1 0.00091 2E-08 54.4 5.2 40 209-248 22-61 (153)
279 cd03018 PRX_AhpE_like Peroxire 97.1 0.0028 6.1E-08 51.0 8.0 40 209-248 28-68 (149)
280 PLN02399 phospholipid hydroper 97.1 0.00091 2E-08 58.2 5.3 40 209-248 99-138 (236)
281 TIGR02540 gpx7 putative glutat 97.1 0.00084 1.8E-08 54.6 4.8 41 103-143 21-61 (153)
282 PRK10877 protein disulfide iso 97.1 0.0016 3.5E-08 56.8 6.6 72 1-80 112-230 (232)
283 PRK09437 bcp thioredoxin-depen 97.0 0.0047 1E-07 50.1 8.8 41 103-143 29-70 (154)
284 cd03015 PRX_Typ2cys Peroxiredo 97.0 0.0042 9.2E-08 51.5 8.5 39 103-141 28-67 (173)
285 KOG2603|consensus 97.0 0.0063 1.4E-07 53.9 9.5 103 87-190 40-167 (331)
286 cd02971 PRX_family Peroxiredox 97.0 0.0042 9.1E-08 49.3 7.8 41 208-248 21-62 (140)
287 cd03020 DsbA_DsbC_DsbG DsbA fa 96.9 0.0025 5.4E-08 54.1 6.6 75 104-185 77-197 (197)
288 cd02971 PRX_family Peroxiredox 96.9 0.0046 1E-07 49.1 7.7 41 103-143 21-62 (140)
289 PLN02412 probable glutathione 96.9 0.0015 3.4E-08 53.9 5.0 40 209-248 29-68 (167)
290 PRK00522 tpx lipid hydroperoxi 96.9 0.0021 4.6E-08 53.1 5.8 53 103-155 43-100 (167)
291 cd03018 PRX_AhpE_like Peroxire 96.9 0.0047 1E-07 49.7 7.7 39 105-143 29-68 (149)
292 PF00462 Glutaredoxin: Glutare 96.9 0.0037 7.9E-08 41.9 5.7 50 108-162 1-55 (60)
293 PRK00522 tpx lipid hydroperoxi 96.8 0.0066 1.4E-07 50.1 8.3 38 209-248 44-82 (167)
294 cd02976 NrdH NrdH-redoxin (Nrd 96.8 0.0064 1.4E-07 42.0 7.1 50 108-162 2-56 (73)
295 TIGR02739 TraF type-F conjugat 96.8 0.0076 1.7E-07 53.0 8.9 62 209-271 150-223 (256)
296 cd03020 DsbA_DsbC_DsbG DsbA fa 96.8 0.0019 4.2E-08 54.8 5.0 36 37-76 161-196 (197)
297 TIGR03137 AhpC peroxiredoxin. 96.8 0.0054 1.2E-07 51.7 7.6 39 209-247 31-70 (187)
298 cd03015 PRX_Typ2cys Peroxiredo 96.8 0.0059 1.3E-07 50.7 7.8 40 209-248 29-69 (173)
299 PRK11200 grxA glutaredoxin 1; 96.8 0.0037 8E-08 45.2 5.7 59 213-273 3-68 (85)
300 PRK09437 bcp thioredoxin-depen 96.8 0.0075 1.6E-07 48.9 8.2 40 209-248 30-70 (154)
301 TIGR03137 AhpC peroxiredoxin. 96.8 0.0043 9.4E-08 52.2 6.9 36 103-138 30-66 (187)
302 PF07449 HyaE: Hydrogenase-1 e 96.8 0.0048 1E-07 46.5 6.2 80 88-168 10-94 (107)
303 PRK13703 conjugal pilus assemb 96.7 0.0055 1.2E-07 53.5 7.3 62 209-271 143-216 (248)
304 cd02991 UAS_ETEA UAS family, E 96.7 0.011 2.4E-07 45.5 8.1 83 102-187 15-111 (116)
305 PF03190 Thioredox_DsbH: Prote 96.7 0.0082 1.8E-07 48.8 7.7 94 73-169 8-116 (163)
306 KOG3414|consensus 96.7 0.018 4E-07 43.9 8.9 75 95-169 12-90 (142)
307 cd03014 PRX_Atyp2cys Peroxired 96.7 0.0038 8.2E-08 50.0 5.8 54 103-158 25-85 (143)
308 cd03419 GRX_GRXh_1_2_like Glut 96.7 0.005 1.1E-07 44.0 5.9 53 108-167 2-62 (82)
309 cd03072 PDI_b'_ERp44 PDIb' fam 96.7 0.0073 1.6E-07 46.2 7.0 80 194-276 1-88 (111)
310 cd03419 GRX_GRXh_1_2_like Glut 96.7 0.0013 2.9E-08 47.0 2.7 67 1-80 3-77 (82)
311 PTZ00256 glutathione peroxidas 96.7 0.0032 6.8E-08 52.9 5.2 38 211-248 43-80 (183)
312 PF11009 DUF2847: Protein of u 96.6 0.014 3E-07 43.7 7.8 76 93-168 6-90 (105)
313 PRK10382 alkyl hydroperoxide r 96.6 0.013 2.8E-07 49.3 8.6 39 103-141 30-69 (187)
314 TIGR02183 GRXA Glutaredoxin, G 96.6 0.0078 1.7E-07 43.7 6.2 73 108-188 2-81 (86)
315 cd03068 PDI_b_ERp72 PDIb famil 96.5 0.06 1.3E-06 40.8 10.7 94 90-188 3-107 (107)
316 PRK10382 alkyl hydroperoxide r 96.5 0.016 3.5E-07 48.7 8.2 64 209-272 31-130 (187)
317 PF00462 Glutaredoxin: Glutare 96.4 0.014 3.1E-07 38.9 6.2 54 213-273 1-59 (60)
318 PTZ00256 glutathione peroxidas 96.4 0.0053 1.2E-07 51.5 4.9 42 103-144 39-81 (183)
319 cd03014 PRX_Atyp2cys Peroxired 96.4 0.0092 2E-07 47.7 6.0 38 209-248 26-64 (143)
320 cd02976 NrdH NrdH-redoxin (Nrd 96.4 0.0022 4.7E-08 44.4 2.0 49 1-54 3-56 (73)
321 PF02966 DIM1: Mitosis protein 96.3 0.096 2.1E-06 40.6 10.6 76 198-275 7-88 (133)
322 PHA03050 glutaredoxin; Provisi 96.3 0.025 5.5E-07 42.9 7.4 62 97-162 6-75 (108)
323 cd02991 UAS_ETEA UAS family, E 96.2 0.022 4.8E-07 43.9 7.1 75 204-282 12-102 (116)
324 cd02968 SCO SCO (an acronym fo 96.2 0.008 1.7E-07 47.8 4.8 33 103-135 21-54 (142)
325 PRK11657 dsbG disulfide isomer 96.1 0.028 6E-07 49.7 8.2 80 105-186 118-249 (251)
326 cd02968 SCO SCO (an acronym fo 96.1 0.01 2.2E-07 47.2 5.1 41 208-248 21-65 (142)
327 cd02066 GRX_family Glutaredoxi 96.1 0.023 5E-07 38.9 6.2 50 108-162 2-56 (72)
328 TIGR02183 GRXA Glutaredoxin, G 96.1 0.018 3.9E-07 41.8 5.6 59 213-273 2-67 (86)
329 cd03068 PDI_b_ERp72 PDIb famil 96.0 0.086 1.9E-06 39.9 9.5 78 197-279 6-92 (107)
330 TIGR02190 GlrX-dom Glutaredoxi 96.0 0.025 5.5E-07 40.2 6.0 68 105-185 7-78 (79)
331 PRK10606 btuE putative glutath 96.0 0.012 2.6E-07 49.2 5.0 39 209-248 25-63 (183)
332 PRK13190 putative peroxiredoxi 95.9 0.044 9.6E-07 46.7 8.4 34 104-137 27-61 (202)
333 cd03073 PDI_b'_ERp72_ERp57 PDI 95.9 0.042 9.1E-07 42.0 7.4 77 196-276 3-91 (111)
334 PRK13190 putative peroxiredoxi 95.9 0.047 1E-06 46.6 8.4 63 210-272 28-128 (202)
335 PRK15000 peroxidase; Provision 95.9 0.042 9.1E-07 46.8 7.9 40 209-248 34-74 (200)
336 PRK15000 peroxidase; Provision 95.9 0.031 6.8E-07 47.6 7.0 39 103-141 33-72 (200)
337 PRK11657 dsbG disulfide isomer 95.8 0.03 6.6E-07 49.4 6.8 39 39-78 210-249 (251)
338 cd02066 GRX_family Glutaredoxi 95.7 0.006 1.3E-07 41.9 1.9 53 1-60 3-60 (72)
339 PHA03050 glutaredoxin; Provisi 95.7 0.061 1.3E-06 40.8 7.3 66 202-273 6-79 (108)
340 TIGR02181 GRX_bact Glutaredoxi 95.6 0.035 7.6E-07 39.3 5.4 50 108-162 1-55 (79)
341 PRK10606 btuE putative glutath 95.6 0.019 4.1E-07 48.1 4.5 40 103-143 24-63 (183)
342 KOG2640|consensus 95.6 0.007 1.5E-07 53.6 2.0 120 104-234 76-199 (319)
343 KOG2640|consensus 95.6 0.0037 8.1E-08 55.3 0.2 118 1-132 81-202 (319)
344 TIGR02189 GlrX-like_plant Glut 95.5 0.041 8.9E-07 41.1 5.8 52 108-166 10-69 (99)
345 KOG3171|consensus 95.5 0.083 1.8E-06 44.3 7.9 79 193-273 139-223 (273)
346 TIGR02194 GlrX_NrdH Glutaredox 95.4 0.05 1.1E-06 37.8 5.7 49 109-162 2-54 (72)
347 cd03418 GRX_GRXb_1_3_like Glut 95.4 0.053 1.1E-06 37.8 5.7 50 108-162 2-57 (75)
348 cd03027 GRX_DEP Glutaredoxin ( 95.4 0.013 2.8E-07 41.0 2.4 50 108-162 3-57 (73)
349 PF05768 DUF836: Glutaredoxin- 95.3 0.16 3.5E-06 36.2 8.2 76 108-186 2-81 (81)
350 cd02972 DsbA_family DsbA famil 95.1 0.077 1.7E-06 38.5 6.3 55 214-269 2-91 (98)
351 cd03029 GRX_hybridPRX5 Glutare 95.1 0.028 6E-07 39.1 3.5 65 108-185 3-71 (72)
352 PRK13599 putative peroxiredoxi 95.0 0.1 2.2E-06 45.0 7.5 38 211-248 31-68 (215)
353 cd03016 PRX_1cys Peroxiredoxin 94.9 0.11 2.4E-06 44.3 7.3 38 211-248 28-65 (203)
354 PTZ00137 2-Cys peroxiredoxin; 94.9 0.11 2.3E-06 46.0 7.3 35 104-138 98-133 (261)
355 cd02972 DsbA_family DsbA famil 94.8 0.13 2.8E-06 37.4 6.7 56 108-164 1-91 (98)
356 TIGR02181 GRX_bact Glutaredoxi 94.8 0.018 3.8E-07 40.9 1.9 51 2-59 3-58 (79)
357 PF02966 DIM1: Mitosis protein 94.8 0.6 1.3E-05 36.3 10.1 73 94-167 8-85 (133)
358 PRK10329 glutaredoxin-like pro 94.7 0.15 3.3E-06 36.4 6.6 50 108-162 3-56 (81)
359 PRK13189 peroxiredoxin; Provis 94.7 0.12 2.7E-06 44.7 7.2 38 211-248 38-75 (222)
360 cd03027 GRX_DEP Glutaredoxin ( 94.7 0.021 4.5E-07 39.9 1.9 45 1-52 4-55 (73)
361 cd03016 PRX_1cys Peroxiredoxin 94.7 0.16 3.5E-06 43.3 7.7 36 106-141 28-63 (203)
362 TIGR02190 GlrX-dom Glutaredoxi 94.6 0.038 8.2E-07 39.3 3.2 56 211-273 8-67 (79)
363 cd03029 GRX_hybridPRX5 Glutare 94.6 0.034 7.5E-07 38.6 2.9 62 1-77 4-71 (72)
364 PTZ00137 2-Cys peroxiredoxin; 94.6 0.18 3.8E-06 44.7 8.0 63 210-272 99-199 (261)
365 KOG3170|consensus 94.6 0.24 5.1E-06 41.3 8.0 79 192-272 91-172 (240)
366 TIGR00365 monothiol glutaredox 94.6 0.19 4E-06 37.3 6.9 61 95-162 3-73 (97)
367 PRK13189 peroxiredoxin; Provis 94.6 0.2 4.2E-06 43.4 8.1 35 107-141 39-73 (222)
368 KOG3170|consensus 94.5 0.61 1.3E-05 38.9 10.3 97 88-186 92-198 (240)
369 cd03067 PDI_b_PDIR_N PDIb fami 94.5 0.18 3.9E-06 37.1 6.4 82 198-281 8-100 (112)
370 cd03023 DsbA_Com1_like DsbA fa 94.4 0.075 1.6E-06 42.6 4.9 31 104-134 5-35 (154)
371 PRK13599 putative peroxiredoxi 94.3 0.16 3.4E-06 43.8 6.9 35 107-141 32-66 (215)
372 PRK10329 glutaredoxin-like pro 94.3 0.12 2.5E-06 37.0 5.1 65 2-79 5-75 (81)
373 cd03418 GRX_GRXb_1_3_like Glut 94.2 0.027 5.9E-07 39.4 1.7 50 2-60 4-61 (75)
374 KOG2603|consensus 94.2 0.25 5.5E-06 44.0 7.9 82 189-270 37-135 (331)
375 PRK10638 glutaredoxin 3; Provi 94.1 0.18 3.8E-06 36.2 5.9 50 108-162 4-58 (83)
376 PF13743 Thioredoxin_5: Thiore 94.1 0.086 1.9E-06 43.9 4.8 25 2-26 2-26 (176)
377 PTZ00253 tryparedoxin peroxida 94.1 0.24 5.2E-06 42.1 7.6 40 209-248 36-76 (199)
378 TIGR02194 GlrX_NrdH Glutaredox 94.1 0.14 3E-06 35.5 5.1 49 214-267 2-54 (72)
379 TIGR00365 monothiol glutaredox 93.9 0.23 5E-06 36.9 6.3 69 200-280 3-81 (97)
380 TIGR02189 GlrX-like_plant Glut 93.9 0.098 2.1E-06 39.0 4.3 59 213-281 10-76 (99)
381 PTZ00253 tryparedoxin peroxida 93.9 0.2 4.4E-06 42.5 6.7 39 104-142 36-75 (199)
382 PRK13191 putative peroxiredoxi 93.9 0.32 7E-06 41.9 7.9 38 211-248 36-73 (215)
383 COG0695 GrxC Glutaredoxin and 93.8 0.14 3E-06 36.5 4.8 50 108-162 3-59 (80)
384 KOG3171|consensus 93.1 0.44 9.4E-06 40.1 7.1 81 86-168 137-223 (273)
385 KOG1752|consensus 93.0 0.74 1.6E-05 34.6 7.7 60 96-162 6-73 (104)
386 PRK10824 glutaredoxin-4; Provi 93.0 0.53 1.2E-05 36.1 7.1 61 95-162 6-76 (115)
387 cd03028 GRX_PICOT_like Glutare 93.0 0.33 7.2E-06 35.4 5.8 60 99-167 3-72 (90)
388 cd03023 DsbA_Com1_like DsbA fa 92.4 0.28 6.1E-06 39.1 5.2 31 209-239 5-35 (154)
389 PRK10638 glutaredoxin 3; Provi 92.3 0.095 2.1E-06 37.5 2.0 52 2-60 6-62 (83)
390 COG0695 GrxC Glutaredoxin and 91.6 0.31 6.7E-06 34.7 4.0 50 213-267 3-59 (80)
391 PF05768 DUF836: Glutaredoxin- 90.8 0.92 2E-05 32.3 5.8 54 213-268 2-56 (81)
392 cd03028 GRX_PICOT_like Glutare 90.7 0.47 1E-05 34.6 4.3 48 219-273 21-73 (90)
393 cd03019 DsbA_DsbA DsbA family, 89.4 0.68 1.5E-05 38.1 4.8 31 103-133 14-44 (178)
394 cd03019 DsbA_DsbA DsbA family, 88.9 0.75 1.6E-05 37.8 4.8 40 208-248 14-53 (178)
395 PRK13191 putative peroxiredoxi 88.9 0.63 1.4E-05 40.1 4.4 40 104-143 33-73 (215)
396 PRK12759 bifunctional gluaredo 88.2 1.5 3.2E-05 41.8 6.8 50 108-162 4-66 (410)
397 PF13462 Thioredoxin_4: Thiore 88.1 1.4 3.1E-05 35.5 5.9 39 209-248 12-52 (162)
398 PF13462 Thioredoxin_4: Thiore 87.9 1.2 2.5E-05 36.0 5.2 40 104-143 12-52 (162)
399 cd03013 PRX5_like Peroxiredoxi 87.6 1.1 2.3E-05 36.4 4.8 54 105-158 30-93 (155)
400 cd03013 PRX5_like Peroxiredoxi 87.1 1.2 2.6E-05 36.1 4.8 50 210-259 30-88 (155)
401 PRK10824 glutaredoxin-4; Provi 86.1 1.7 3.6E-05 33.4 4.7 69 200-280 6-84 (115)
402 KOG1752|consensus 86.0 2.3 4.9E-05 32.0 5.3 53 1-60 17-77 (104)
403 COG1331 Highly conserved prote 83.8 1.7 3.8E-05 43.1 4.9 79 195-274 29-122 (667)
404 PRK12759 bifunctional gluaredo 82.0 2.6 5.6E-05 40.2 5.2 47 1-54 5-66 (410)
405 cd02974 AhpF_NTD_N Alkyl hydro 81.7 12 0.00026 27.5 7.6 70 105-186 20-91 (94)
406 COG1225 Bcp Peroxiredoxin [Pos 81.0 4.7 0.0001 32.7 5.6 55 103-158 29-90 (157)
407 cd02974 AhpF_NTD_N Alkyl hydro 80.4 7.4 0.00016 28.6 6.1 65 2-78 25-91 (94)
408 PRK10954 periplasmic protein d 79.9 2.8 6E-05 35.8 4.3 37 105-142 38-77 (207)
409 cd03060 GST_N_Omega_like GST_N 79.6 8.3 0.00018 26.2 5.9 49 109-162 2-54 (71)
410 cd03041 GST_N_2GST_N GST_N fam 79.3 3.3 7.1E-05 28.9 3.8 66 2-80 4-76 (77)
411 COG1225 Bcp Peroxiredoxin [Pos 79.2 4.7 0.0001 32.7 5.1 51 209-259 30-87 (157)
412 PF06491 Disulph_isomer: Disul 79.1 28 0.00061 27.1 9.2 95 180-277 4-111 (136)
413 PHA03075 glutaredoxin-like pro 78.4 2.6 5.5E-05 32.0 3.0 39 210-248 2-40 (123)
414 PRK10954 periplasmic protein d 77.1 3.3 7.2E-05 35.3 3.9 38 210-248 38-78 (207)
415 TIGR02654 circ_KaiB circadian 74.1 7.1 0.00015 28.2 4.3 71 3-73 9-82 (87)
416 COG3019 Predicted metal-bindin 72.8 6.4 0.00014 31.0 4.1 74 106-189 26-104 (149)
417 cd03041 GST_N_2GST_N GST_N fam 71.9 5.1 0.00011 27.9 3.2 70 108-188 2-76 (77)
418 COG4545 Glutaredoxin-related p 71.2 2.7 5.9E-05 29.1 1.5 25 1-25 5-29 (85)
419 cd03060 GST_N_Omega_like GST_N 71.0 7 0.00015 26.6 3.7 47 2-53 3-53 (71)
420 cd03051 GST_N_GTT2_like GST_N 70.7 7.3 0.00016 26.4 3.8 54 109-162 2-57 (74)
421 cd03031 GRX_GRX_like Glutaredo 70.5 3.2 7E-05 33.3 2.1 50 108-162 2-66 (147)
422 PRK09301 circadian clock prote 69.8 10 0.00022 28.3 4.4 75 3-77 12-89 (103)
423 cd00570 GST_N_family Glutathio 69.8 6.3 0.00014 25.9 3.2 48 2-54 3-55 (71)
424 COG4545 Glutaredoxin-related p 68.8 9.4 0.0002 26.6 3.7 25 214-238 5-29 (85)
425 cd00570 GST_N_family Glutathio 68.4 5.6 0.00012 26.2 2.7 49 109-162 2-55 (71)
426 PHA03075 glutaredoxin-like pro 68.1 8 0.00017 29.4 3.6 29 105-133 2-30 (123)
427 cd02978 KaiB_like KaiB-like fa 67.3 7.8 0.00017 26.9 3.1 52 3-54 7-61 (72)
428 cd02978 KaiB_like KaiB-like fa 67.0 18 0.0004 25.1 4.9 56 107-162 3-61 (72)
429 PF13743 Thioredoxin_5: Thiore 65.6 12 0.00027 30.9 4.7 33 215-248 2-34 (176)
430 cd02977 ArsC_family Arsenate R 64.8 7.1 0.00015 29.1 2.9 21 109-129 2-22 (105)
431 KOG2792|consensus 64.2 31 0.00068 30.3 6.9 40 105-144 140-185 (280)
432 COG3531 Predicted protein-disu 64.1 11 0.00025 31.5 4.1 44 145-188 163-208 (212)
433 cd03031 GRX_GRX_like Glutaredo 63.3 4.6 9.9E-05 32.5 1.6 21 1-21 3-29 (147)
434 COG3634 AhpF Alkyl hydroperoxi 62.9 1.3E+02 0.0029 28.0 11.6 129 47-187 59-196 (520)
435 PF09673 TrbC_Ftype: Type-F co 62.2 19 0.00041 27.4 4.8 44 226-270 36-80 (113)
436 TIGR02654 circ_KaiB circadian 61.6 38 0.00082 24.5 5.9 76 106-181 4-82 (87)
437 cd03035 ArsC_Yffb Arsenate Red 61.6 9 0.00019 28.7 2.9 21 109-129 2-22 (105)
438 PRK09301 circadian clock prote 61.3 40 0.00087 25.2 6.1 80 105-184 6-88 (103)
439 cd03036 ArsC_like Arsenate Red 60.9 6 0.00013 30.0 1.8 20 109-128 2-21 (111)
440 COG1999 Uncharacterized protei 60.7 30 0.00066 29.5 6.3 61 103-163 66-137 (207)
441 COG1331 Highly conserved prote 59.2 27 0.00059 35.0 6.4 79 90-169 29-122 (667)
442 cd03051 GST_N_GTT2_like GST_N 58.8 19 0.00041 24.2 4.1 53 215-267 3-57 (74)
443 cd03045 GST_N_Delta_Epsilon GS 58.6 13 0.00029 25.2 3.2 49 109-162 2-57 (74)
444 cd03059 GST_N_SspA GST_N famil 56.9 38 0.00083 22.7 5.4 66 109-187 2-71 (73)
445 PF02630 SCO1-SenC: SCO1/SenC; 56.4 25 0.00053 29.0 5.0 31 103-133 51-82 (174)
446 cd02977 ArsC_family Arsenate R 55.9 9.6 0.00021 28.4 2.2 22 214-235 2-23 (105)
447 PF13417 GST_N_3: Glutathione 55.4 64 0.0014 22.0 7.3 68 110-190 1-72 (75)
448 cd03040 GST_N_mPGES2 GST_N fam 55.2 58 0.0013 22.2 6.1 70 108-188 2-75 (77)
449 PRK01655 spxA transcriptional 55.0 16 0.00034 28.6 3.4 21 108-128 2-22 (131)
450 PF00837 T4_deiodinase: Iodoth 54.1 18 0.00039 31.4 3.8 56 192-248 82-140 (237)
451 cd03035 ArsC_Yffb Arsenate Red 53.3 14 0.0003 27.7 2.7 21 214-234 2-22 (105)
452 cd03036 ArsC_like Arsenate Red 50.8 14 0.00031 27.9 2.5 19 2-20 3-21 (111)
453 PLN02182 cytidine deaminase 50.1 9.2 0.0002 35.0 1.5 16 3-19 128-143 (339)
454 TIGR02742 TrbC_Ftype type-F co 50.0 28 0.0006 27.3 4.0 22 145-166 60-81 (130)
455 COG1651 DsbG Protein-disulfide 49.7 23 0.00051 30.7 4.0 38 145-187 204-241 (244)
456 COG0295 Cdd Cytidine deaminase 49.3 11 0.00024 29.6 1.7 14 5-19 86-99 (134)
457 PRK13730 conjugal transfer pil 48.6 1.6E+02 0.0034 25.1 8.3 33 249-281 150-182 (212)
458 PRK12559 transcriptional regul 48.5 23 0.00051 27.7 3.4 22 108-129 2-23 (131)
459 TIGR01617 arsC_related transcr 48.3 19 0.00042 27.4 2.9 20 109-128 2-21 (117)
460 TIGR01617 arsC_related transcr 48.2 16 0.00035 27.8 2.5 19 2-20 3-21 (117)
461 cd03045 GST_N_Delta_Epsilon GS 47.8 25 0.00055 23.7 3.2 50 214-266 2-56 (74)
462 COG1651 DsbG Protein-disulfide 46.9 38 0.00082 29.4 4.9 30 105-134 85-114 (244)
463 PF09673 TrbC_Ftype: Type-F co 46.6 60 0.0013 24.6 5.3 21 37-57 60-80 (113)
464 PF06053 DUF929: Domain of unk 46.6 45 0.00097 29.3 5.1 60 100-165 54-114 (249)
465 PF07689 KaiB: KaiB domain; I 46.3 4.5 9.9E-05 28.9 -0.8 52 3-54 3-57 (82)
466 cd03032 ArsC_Spx Arsenate Redu 45.5 28 0.00061 26.4 3.4 22 108-129 2-23 (115)
467 TIGR02742 TrbC_Ftype type-F co 45.0 99 0.0021 24.2 6.4 23 37-59 60-82 (130)
468 cd03037 GST_N_GRX2 GST_N famil 43.4 79 0.0017 21.1 5.2 65 110-186 3-70 (71)
469 KOG0833|consensus 43.1 17 0.00037 29.8 1.9 19 3-22 101-119 (173)
470 PF00837 T4_deiodinase: Iodoth 42.4 45 0.00097 29.0 4.4 58 86-143 81-142 (237)
471 PRK01655 spxA transcriptional 42.4 31 0.00067 27.0 3.3 23 213-235 2-24 (131)
472 cd03055 GST_N_Omega GST_N fami 41.1 48 0.001 23.7 3.9 51 107-162 18-72 (89)
473 cd03056 GST_N_4 GST_N family, 40.0 38 0.00082 22.6 3.1 49 109-162 2-57 (73)
474 COG1999 Uncharacterized protei 39.4 1.4E+02 0.0031 25.4 7.1 61 208-268 66-137 (207)
475 PRK13344 spxA transcriptional 39.2 39 0.00083 26.5 3.3 21 108-128 2-22 (132)
476 PF02630 SCO1-SenC: SCO1/SenC; 38.1 73 0.0016 26.2 5.1 41 208-248 51-94 (174)
477 PRK12559 transcriptional regul 36.0 45 0.00097 26.1 3.3 23 213-235 2-24 (131)
478 PF01323 DSBA: DSBA-like thior 36.0 52 0.0011 27.0 3.9 36 108-143 2-37 (193)
479 cd03032 ArsC_Spx Arsenate Redu 35.3 41 0.0009 25.5 2.9 22 214-235 3-24 (115)
480 PF04134 DUF393: Protein of un 35.2 61 0.0013 24.3 3.9 60 3-66 2-67 (114)
481 cd03033 ArsC_15kD Arsenate Red 35.1 53 0.0011 25.0 3.4 21 108-128 2-22 (113)
482 COG3531 Predicted protein-disu 34.6 33 0.00072 28.9 2.3 27 107-133 3-29 (212)
483 COG3019 Predicted metal-bindin 34.2 97 0.0021 24.6 4.7 103 212-334 27-140 (149)
484 KOG2507|consensus 29.8 1.5E+02 0.0033 28.2 5.9 85 103-188 17-110 (506)
485 PRK13730 conjugal transfer pil 29.5 2.1E+02 0.0045 24.4 6.2 41 37-78 151-191 (212)
486 PRK13344 spxA transcriptional 29.0 67 0.0015 25.2 3.2 21 214-234 3-23 (132)
487 PF01323 DSBA: DSBA-like thior 28.5 1.2E+02 0.0027 24.7 5.0 36 213-248 2-37 (193)
488 PF07689 KaiB: KaiB domain; I 27.7 34 0.00074 24.4 1.2 53 110-162 2-57 (82)
489 PF06764 DUF1223: Protein of u 27.4 56 0.0012 27.8 2.6 23 2-24 4-26 (202)
490 cd03070 PDI_b_ERp44 PDIb famil 27.3 2.5E+02 0.0054 20.5 7.0 76 200-282 8-86 (91)
491 PF11072 DUF2859: Protein of u 25.4 80 0.0017 25.1 3.0 24 138-161 113-136 (142)
492 PF11287 DUF3088: Protein of u 25.2 1.3E+02 0.0028 22.8 3.9 48 8-57 24-77 (112)
493 TIGR03765 ICE_PFL_4695 integra 25.1 74 0.0016 23.8 2.6 35 122-161 64-98 (105)
494 COG1550 Uncharacterized protei 24.8 1.1E+02 0.0025 22.3 3.3 45 3-47 10-55 (95)
495 cd03033 ArsC_15kD Arsenate Red 24.8 96 0.0021 23.5 3.3 22 214-235 3-24 (113)
496 cd03025 DsbA_FrnE_like DsbA fa 24.7 63 0.0014 26.6 2.5 26 108-133 3-28 (193)
497 COG2761 FrnE Predicted dithiol 24.4 1.2E+02 0.0027 26.2 4.2 39 145-187 173-211 (225)
498 cd03025 DsbA_FrnE_like DsbA fa 24.4 84 0.0018 25.9 3.2 27 213-239 3-29 (193)
499 PF02645 DegV: Uncharacterised 24.4 5E+02 0.011 23.0 9.2 97 145-248 13-116 (280)
500 PF10865 DUF2703: Domain of un 24.1 2E+02 0.0043 22.2 4.8 46 7-54 14-67 (120)
No 1
>KOG0190|consensus
Probab=100.00 E-value=4.2e-40 Score=304.91 Aligned_cols=281 Identities=17% Similarity=0.378 Sum_probs=224.6
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhccc--CCeEEEcC---ChHHHHhcCCCCCCeEEEEeCCc-eeeecCCCCCHHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQY--GIDMVKIS---DTEAAAKYNIINLPSLVYFRKQV-PLLYDGDLFDEEKIL 74 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~--~i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~~-~~~y~G~~~~~~~i~ 74 (346)
|.||||||+||++++|+|+++|+.|... .|.++++| +.++|++|+|++||||.+|++|. +..|.|.+.. ++|+
T Consensus 47 VeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrnG~~~~~Y~G~r~a-dgIv 125 (493)
T KOG0190|consen 47 VEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFRNGRSAQDYNGPREA-DGIV 125 (493)
T ss_pred EEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEecCCcceeccCcccH-HHHH
Confidence 6899999999999999999999999655 68999987 57999999999999999999998 5899999888 6999
Q ss_pred HHHhccCCccccCceeecC-HHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhC
Q psy160 75 TWLTSQDVFEIKNEIEEVN-RRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWG 153 (346)
Q Consensus 75 ~~i~~~~~p~~~~~v~~l~-~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~ 153 (346)
.|+.++..| .+..+. .+.++.++...+.++|-|+..--+.- ..+-.+|..+.. ++.|+..+..+++.+++
T Consensus 126 ~wl~kq~gP----a~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~----~~~~~~a~~l~~-d~~F~~ts~~~~~~~~~ 196 (493)
T KOG0190|consen 126 KWLKKQSGP----ASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLA----ESFFDAASKLRD-DYKFAHTSDSDVAKKLE 196 (493)
T ss_pred HHHHhccCC----CceecccHHHHHhhccCCceEEEEEecccccch----HHHHHHHHhccc-cceeeccCcHhHHhhcc
Confidence 999999999 888886 68888888887777777776543332 233344444432 37888777889999888
Q ss_pred CC--CcceEEEEecCC--cceecCCcchhHHHHHHHhhcc----------------------------------------
Q psy160 154 VT--KLPAVVYFRHRF--PSIYRGDLSEEEEVLQWLITQK---------------------------------------- 189 (346)
Q Consensus 154 i~--~~Ptl~~~~~g~--~~~y~g~~~~~~~i~~fi~~~~---------------------------------------- 189 (346)
.. +.|-+.+++... ...|+|....+ .|.+|+..+.
T Consensus 197 ~~~~~~~~i~l~kk~d~~~~~~~~~~~~~-~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 275 (493)
T KOG0190|consen 197 LNTEGTFPIVLFKKFDELLVKYDGSFTPE-LLKKFIQENSLPLVTEFTVANNAKIYSSFVKLGLDFFVFFKCNRFEELRK 275 (493)
T ss_pred CCCCCcceEEeccccccchhhcccccCHH-HHHHHHHHhcccccceecccccceeeccccccceeEEeccccccHHHHHH
Confidence 75 355677777643 45578888855 6888998621
Q ss_pred --------------------------------------------------------------------------------
Q psy160 190 -------------------------------------------------------------------------------- 189 (346)
Q Consensus 190 -------------------------------------------------------------------------------- 189 (346)
T Consensus 276 ~~~~vAk~f~~~l~Fi~~d~e~~~~~~~~~Gl~~~~~~~~~v~~~~~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~~p~~k 355 (493)
T KOG0190|consen 276 KFEEVAKKFKGKLRFILIDPESFARVLEFFGLEEEQLPIRAVILNEDGSKYPLEEEELDQENIESFVKDFLDGKVKPHLK 355 (493)
T ss_pred HHHHHHHhcccceEEEEEChHHhhHHHHhcCcccccCCeeEEeeccccccccCccccccHHHHHHHHHHHhcCccccccc
Confidence
Q ss_pred --------ccCcEEEccHHHHHHH-HhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcC-ceEEEEE--cChhhhhhC
Q psy160 190 --------TEDRIELITRVMLETM-VEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIY-GIHMVKI--QDPQLAKRY 257 (346)
Q Consensus 190 --------~~~~v~~l~~~~~~~~-~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~-~i~~~~i--~~~~~~~~~ 257 (346)
..+.|..+.+++|+++ +++++.+||.||||||+||+++.|.|++||+.+++. ++.++++ ...++ ..+
T Consensus 356 SqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~-~~~ 434 (493)
T KOG0190|consen 356 SQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV-PSL 434 (493)
T ss_pred cCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC-ccc
Confidence 0146889999999996 678999999999999999999999999999999864 5999999 23333 345
Q ss_pred CCccccEEEEEeCCe---EEEeecCccccccchhhhhhhccC
Q psy160 258 SIKTFPALVYFRNGN---PLIFEGENKILKGTYIGTYISTKA 296 (346)
Q Consensus 258 ~i~~~Pti~~~~~g~---~~~y~g~~~~~~~~~~~~~i~~~~ 296 (346)
.+.+||||++|+.|. ++.|+|+|+.+. +..|+....
T Consensus 435 ~~~~fPTI~~~pag~k~~pv~y~g~R~le~---~~~fi~~~a 473 (493)
T KOG0190|consen 435 KVDGFPTILFFPAGHKSNPVIYNGDRTLED---LKKFIKKSA 473 (493)
T ss_pred cccccceEEEecCCCCCCCcccCCCcchHH---HHhhhccCC
Confidence 788899999999774 899999997544 666666554
No 2
>PTZ00102 disulphide isomerase; Provisional
Probab=100.00 E-value=6.8e-34 Score=275.02 Aligned_cols=289 Identities=15% Similarity=0.312 Sum_probs=216.7
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcc--cCCeEEEcC---ChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQ--YGIDMVKIS---DTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILT 75 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~--~~i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~ 75 (346)
|+||||||+||+++.|+|.++++.+.. .++.++.+| +.++|.+|+|++|||+++|++|.+..|.|.++. +++.+
T Consensus 54 v~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~-~~l~~ 132 (477)
T PTZ00102 54 VKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGNPVNYSGGRTA-DGIVS 132 (477)
T ss_pred EEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCceEEecCCCCH-HHHHH
Confidence 689999999999999999999998843 347787765 689999999999999999999988899998776 58999
Q ss_pred HHhccCCcccc---------------------------------------------------------------------
Q psy160 76 WLTSQDVFEIK--------------------------------------------------------------------- 86 (346)
Q Consensus 76 ~i~~~~~p~~~--------------------------------------------------------------------- 86 (346)
|+.+...|...
T Consensus 133 ~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~ 212 (477)
T PTZ00102 133 WIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKHREHAKFFVKKHEGKNKIYVLHKDEEGVE 212 (477)
T ss_pred HHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCCcHHHHHHHHHHHhccccceEEEEcCCCCCcEEEEecCCCCcc
Confidence 99876554100
Q ss_pred -------------------CceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---
Q psy160 87 -------------------NEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA--- 144 (346)
Q Consensus 87 -------------------~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~--- 144 (346)
..+.+++.+++..++.+.... +.|. ..+.....+.+.++++|+.+++. +.|+.+|
T Consensus 213 ~~~~~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~A~~~~~~-~~f~~vd~~~ 289 (477)
T PTZ00102 213 LFMGKTKEELEEFVSTESFPLFAEINAENYRRYISSGKDL-VWFC-GTTEDYDKYKSVVRKVARKLREK-YAFVWLDTEQ 289 (477)
T ss_pred cCCCCCHHHHHHHHHHcCCCceeecCccchHHHhcCCccE-EEEe-cCHHHHHHHHHHHHHHHHhccCc-eEEEEEechh
Confidence 011222333333333333332 2222 24566678899999999999654 6777776
Q ss_pred Chh-hHHhhCCCCcceEEEEecCCcceecCC----cchhHHHHHHHhhccc----------------cCcEEEccHHHHH
Q psy160 145 DPR-YARKWGVTKLPAVVYFRHRFPSIYRGD----LSEEEEVLQWLITQKT----------------EDRIELITRVMLE 203 (346)
Q Consensus 145 ~~~-l~~~~~i~~~Ptl~~~~~g~~~~y~g~----~~~~~~i~~fi~~~~~----------------~~~v~~l~~~~~~ 203 (346)
.+. ++..+|+..+|++++...+..+.+.+. ++ .++|.+|+.+... ...+..+++++|+
T Consensus 290 ~~~~~~~~~gi~~~P~~~i~~~~~~y~~~~~~~~~~~-~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~ 368 (477)
T PTZ00102 290 FGSHAKEHLLIEEFPGLAYQSPAGRYLLPPAKESFDS-VEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFE 368 (477)
T ss_pred cchhHHHhcCcccCceEEEEcCCcccCCCccccccCC-HHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchH
Confidence 332 788999999999988874434445443 34 5589999986331 2357788999999
Q ss_pred HH-HhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcC-ceEEEEE---cChhhhhhCCCccccEEEEEeCCe--EEEe
Q psy160 204 TM-VEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIY-GIHMVKI---QDPQLAKRYSIKTFPALVYFRNGN--PLIF 276 (346)
Q Consensus 204 ~~-~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~-~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~--~~~y 276 (346)
+. ++++++++|.|||+||++|+.+.|.|+++|+.+++. .+.++.+ .+...++.++++++||+++|++|+ +..|
T Consensus 369 ~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~ 448 (477)
T PTZ00102 369 EIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERTPIPY 448 (477)
T ss_pred HHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCcceeEe
Confidence 86 677889999999999999999999999999988642 4788888 466678999999999999999875 4579
Q ss_pred ecCccccccchhhhhhhccCC
Q psy160 277 EGENKILKGTYIGTYISTKAF 297 (346)
Q Consensus 277 ~g~~~~~~~~~~~~~i~~~~~ 297 (346)
.|.++.+. +..|++....
T Consensus 449 ~G~~~~~~---l~~~i~~~~~ 466 (477)
T PTZ00102 449 EGERTVEG---FKEFVNKHAT 466 (477)
T ss_pred cCcCCHHH---HHHHHHHcCC
Confidence 99886433 6666666543
No 3
>KOG0191|consensus
Probab=100.00 E-value=1.3e-33 Score=264.49 Aligned_cols=269 Identities=16% Similarity=0.266 Sum_probs=211.9
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC---ChHHHHhcCCCCCCeEEEEeCC-ceeeecCCCCCHHHHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKIS---DTEAAAKYNIINLPSLVYFRKQ-VPLLYDGDLFDEEKILTW 76 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~-~~~~y~G~~~~~~~i~~~ 76 (346)
|+||+|||+||+++.|+|+++++.++. -+.++.+| +.++|.+|+|++|||+.+|.++ .+..|.|...+ +.+.+|
T Consensus 52 v~fyapwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~~-~~~~~~ 129 (383)
T KOG0191|consen 52 VEFYAPWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGPRNA-ESLAEF 129 (383)
T ss_pred EEEECCCCcchhhhchHHHHHHHHhcC-ceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceeeccCcccH-HHHHHH
Confidence 689999999999999999999999854 34555555 7899999999999999999998 78899996666 589999
Q ss_pred HhccCCc---cccCc-eeecCHHHHHHHHhc-CCcEEEEEECCCChhHHHHHHHHHHHHhhcc-CCCcEEEEeC---Chh
Q psy160 77 LTSQDVF---EIKNE-IEEVNRRMLDKLLEE-NEFVTVFFYETDHKDSVKVLERLEKIDGETD-NMDITFVKMA---DPR 147 (346)
Q Consensus 77 i~~~~~p---~~~~~-v~~l~~~~~~~~~~~-~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~-~~~i~~~~~~---~~~ 147 (346)
+.....+ ..... +.+++..+++..... +..|+|.||+|||+||+.+.|+|+++++.+. +..+.++.++ ...
T Consensus 130 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~ 209 (383)
T KOG0191|consen 130 LIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKS 209 (383)
T ss_pred HHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHH
Confidence 8776554 22334 888999999887644 5789999999999999999999999999885 3558888777 678
Q ss_pred hHHhhCCCCcceEEEEecCCc--ceecCCcchhHHHHHHHhhccccC----cEEEccH-----------HHHHHHHhccc
Q psy160 148 YARKWGVTKLPAVVYFRHRFP--SIYRGDLSEEEEVLQWLITQKTED----RIELITR-----------VMLETMVEETQ 210 (346)
Q Consensus 148 l~~~~~i~~~Ptl~~~~~g~~--~~y~g~~~~~~~i~~fi~~~~~~~----~v~~l~~-----------~~~~~~~~~~~ 210 (346)
+|++++|++|||+.+|++|.. ..|.|.++. +.+++|+.+...+. .+..... +++-.......
T Consensus 210 ~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~-~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 288 (383)
T KOG0191|consen 210 LASRLEVRGYPTLKLFPPGEEDIYYYSGLRDS-DSIVSFVEKKERRNIPEPELKEIEDKDTFSPTFLDTAEFLDSLEKKK 288 (383)
T ss_pred HhhhhcccCCceEEEecCCCcccccccccccH-HHHHHHHHhhcCCCCCCcccccccCccccccchhhhhhhhhhhHHhh
Confidence 999999999999999998775 556777774 49999999865431 1111111 11111222445
Q ss_pred eEEEEEEcCCChhhHHHHHHHHHHHhh-cCc-CceEEEEE---cChhhhhhCCCccccEEEEEeCCe
Q psy160 211 YLAVYFYKLNCNICDQILEGLEKVDDE-CDI-YGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGN 272 (346)
Q Consensus 211 ~~lv~F~~~~c~~c~~~~~~~~~la~~-~~~-~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~ 272 (346)
.+++.|+++||++|....|.++..+.. ... ..+.+.++ ....+|.+..++.+|++.+++.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (383)
T KOG0191|consen 289 NKFVKFYAPWCGHCGGFAPVYEDKAELGYPDLSKIKAAKLDCALLKSLCQKAIVRGYPTIKLYNYGK 355 (383)
T ss_pred hhHhhhhcchhhcccccchhHHHHHhccccccccceeeccccccccchhhHhhhhcCceeEeecccc
Confidence 789999999999999999999999988 111 14666666 344488999999999999998875
No 4
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=100.00 E-value=9e-32 Score=259.19 Aligned_cols=289 Identities=18% Similarity=0.341 Sum_probs=214.8
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccC--CeEEEcC---ChHHHHhcCCCCCCeEEEEeCCce--eeecCCCCCHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYG--IDMVKIS---DTEAAAKYNIINLPSLVYFRKQVP--LLYDGDLFDEEKI 73 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~--i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~~~--~~y~G~~~~~~~i 73 (346)
|.||||||++|+++.|.+.++++.+...+ +.++.+| +.++|.+|+|.++||+++|++|.. ..|.|.++. +++
T Consensus 23 v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~-~~l 101 (462)
T TIGR01130 23 VEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRDA-DGI 101 (462)
T ss_pred EEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeCCccceeEecCCCCH-HHH
Confidence 68999999999999999999999885444 7777765 578999999999999999999875 789998877 589
Q ss_pred HHHHhccCCccccCceeecC-H----------------------------------------------------------
Q psy160 74 LTWLTSQDVFEIKNEIEEVN-R---------------------------------------------------------- 94 (346)
Q Consensus 74 ~~~i~~~~~p~~~~~v~~l~-~---------------------------------------------------------- 94 (346)
.+|+.+...| .+.+++ .
T Consensus 102 ~~~i~~~~~~----~~~~i~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (462)
T TIGR01130 102 VKYMKKQSGP----AVKEIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSVAEKLRDVYFFFAHSSDVAAFAKLGAF 177 (462)
T ss_pred HHHHHHhcCC----CceeecCHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHHHHhhhccceEEecCCHHHHhhcCCC
Confidence 9999776544 122221 1
Q ss_pred ---------------------------HHHHHHHhcC-------------------CcEEEEEE--CCCChhHHHHHHHH
Q psy160 95 ---------------------------RMLDKLLEEN-------------------EFVTVFFY--ETDHKDSVKVLERL 126 (346)
Q Consensus 95 ---------------------------~~~~~~~~~~-------------------~~~lv~F~--~~~C~~c~~~~~~~ 126 (346)
+++..++..+ ++.+++|+ ......|..+...+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 257 (462)
T TIGR01130 178 PDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESGPLVVLYYNVDESLDPFEELRNRF 257 (462)
T ss_pred CCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCCCceeEEEEecCCchHHHHHHHHH
Confidence 2222233211 13333333 23444568888899
Q ss_pred HHHHhhccCCCcEEEEeC---ChhhHHhhCCC--CcceEEEEecC--CcceecC-CcchhHHHHHHHhhccc--------
Q psy160 127 EKIDGETDNMDITFVKMA---DPRYARKWGVT--KLPAVVYFRHR--FPSIYRG-DLSEEEEVLQWLITQKT-------- 190 (346)
Q Consensus 127 ~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~--~~Ptl~~~~~g--~~~~y~g-~~~~~~~i~~fi~~~~~-------- 190 (346)
+++|+.+.+..+.|+.+| .+.+++.+|+. .+|+++++... ..+.+.+ ..+ .+.|.+|+.+...
T Consensus 258 ~~~a~~~~~~~i~f~~~d~~~~~~~~~~~~~~~~~~P~~vi~~~~~~~~y~~~~~~~~-~~~i~~fi~~~~~g~~~~~~~ 336 (462)
T TIGR01130 258 LEAAKKFRGKFVNFAVADEEDFGRELEYFGLKAEKFPAVAIQDLEGNKKYPMDQEEFS-SENLEAFVKDFLDGKLKPYLK 336 (462)
T ss_pred HHHHHHCCCCeEEEEEecHHHhHHHHHHcCCCccCCceEEEEeCCcccccCCCcCCCC-HHHHHHHHHHHhcCCCCeeec
Confidence 999988864347777766 56899999998 69999999753 2345555 455 4589999987431
Q ss_pred --------cCcEEEccHHHHHHHH-hccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc-C-ceEEEEE--cChhhhhhC
Q psy160 191 --------EDRIELITRVMLETMV-EETQYLAVYFYKLNCNICDQILEGLEKVDDECDI-Y-GIHMVKI--QDPQLAKRY 257 (346)
Q Consensus 191 --------~~~v~~l~~~~~~~~~-~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~-~-~i~~~~i--~~~~~~~~~ 257 (346)
...+..++.++|++++ +.+++++|.||++||++|+.+.|.++++++.+++ . .+.++++ +..++.. +
T Consensus 337 se~~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~~-~ 415 (462)
T TIGR01130 337 SEPIPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVPP-F 415 (462)
T ss_pred cCCCCccCCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccCC-C
Confidence 2367788999999964 5688999999999999999999999999999985 2 5888988 3445555 9
Q ss_pred CCccccEEEEEeCCe---EEEeecCccccccchhhhhhhccCCCC
Q psy160 258 SIKTFPALVYFRNGN---PLIFEGENKILKGTYIGTYISTKAFSL 299 (346)
Q Consensus 258 ~i~~~Pti~~~~~g~---~~~y~g~~~~~~~~~~~~~i~~~~~~~ 299 (346)
+|+++|++++|++|. +..|.|.++.+. +..|+.......
T Consensus 416 ~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~---l~~~l~~~~~~~ 457 (462)
T TIGR01130 416 EVEGFPTIKFVPAGKKSEPVPYDGDRTLED---FSKFIAKHATFP 457 (462)
T ss_pred CccccCEEEEEeCCCCcCceEecCcCCHHH---HHHHHHhcCCCC
Confidence 999999999999884 468999876333 566666554433
No 5
>KOG0190|consensus
Probab=99.95 E-value=1.5e-27 Score=221.50 Aligned_cols=230 Identities=16% Similarity=0.246 Sum_probs=190.8
Q ss_pred HHhccCCccccCceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCC--CcEEEEeC---ChhhHH
Q psy160 76 WLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNM--DITFVKMA---DPRYAR 150 (346)
Q Consensus 76 ~i~~~~~p~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~--~i~~~~~~---~~~l~~ 150 (346)
++.....|.....|..|+.+||+.++..++.++|.||||||+||+++.|+|+++|+.+... .+..+++| +.++|.
T Consensus 14 ~~~~a~~~~~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~ 93 (493)
T KOG0190|consen 14 SSEAASVPKAEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLAS 93 (493)
T ss_pred hhhhhhcCCcccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHh
Confidence 3333333345679999999999999999999999999999999999999999999999654 68899988 788999
Q ss_pred hhCCCCcceEEEEecCC-cceecCCcchhHHHHHHHhhccccCcEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHH
Q psy160 151 KWGVTKLPAVVYFRHRF-PSIYRGDLSEEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILE 229 (346)
Q Consensus 151 ~~~i~~~Ptl~~~~~g~-~~~y~g~~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~ 229 (346)
+|+|++|||+.+|++|+ +..|+|.+..+ +|+.|+.++..|.....-+.+.+..++..+..++|.|+..--+. . .
T Consensus 94 ~y~v~gyPTlkiFrnG~~~~~Y~G~r~ad-gIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~--~--~ 168 (493)
T KOG0190|consen 94 KYEVRGYPTLKIFRNGRSAQDYNGPREAD-GIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKDLESL--A--E 168 (493)
T ss_pred hhcCCCCCeEEEEecCCcceeccCcccHH-HHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecccccc--h--H
Confidence 99999999999999999 58999999955 99999999999988777778888888888788888888764432 1 4
Q ss_pred HHHHHHhhcCcCceEEEEEcChhhhhhCCCc--cccEEEEEeCCe--EEEeecCccccccchhhhhhhccCCCCCCcccC
Q psy160 230 GLEKVDDECDIYGIHMVKIQDPQLAKRYSIK--TFPALVYFRNGN--PLIFEGENKILKGTYIGTYISTKAFSLIPFCFS 305 (346)
Q Consensus 230 ~~~~la~~~~~~~i~~~~i~~~~~~~~~~i~--~~Pti~~~~~g~--~~~y~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 305 (346)
.+..+|..+.+ ++.|+..++.+++++++.. +.|-+++++... ...|.|..+.+. +..|++.++.|++.+.|.
T Consensus 169 ~~~~~a~~l~~-d~~F~~ts~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~---l~~Fi~~~~~plv~~ft~ 244 (493)
T KOG0190|consen 169 SFFDAASKLRD-DYKFAHTSDSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPEL---LKKFIQENSLPLVTEFTV 244 (493)
T ss_pred HHHHHHHhccc-cceeeccCcHhHHhhccCCCCCcceEEeccccccchhhcccccCHHH---HHHHHHHhcccccceecc
Confidence 55556666664 7888866899999999874 356688887653 456778876443 899999999999999999
Q ss_pred CCCCCccch
Q psy160 306 EKHPGAFQT 314 (346)
Q Consensus 306 ~~~~~~~~~ 314 (346)
++...++++
T Consensus 245 ~~~~~~~~~ 253 (493)
T KOG0190|consen 245 ANNAKIYSS 253 (493)
T ss_pred cccceeecc
Confidence 998888877
No 6
>KOG0191|consensus
Probab=99.94 E-value=3e-26 Score=214.76 Aligned_cols=204 Identities=20% Similarity=0.333 Sum_probs=165.4
Q ss_pred eeecC-HHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEe
Q psy160 89 IEEVN-RRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 89 v~~l~-~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 164 (346)
...++ .......+..+..++|+||+|||+||+++.|+|.+++..+++ .+.++.+| +..+|++|+|+++||+.+|.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~ 109 (383)
T KOG0191|consen 31 VSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCDEHKDLCEKYGIQGFPTLKVFR 109 (383)
T ss_pred hhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcC-ceEEEEeCchhhHHHHHhcCCccCcEEEEEc
Confidence 33344 444455566778999999999999999999999999999977 47778777 88999999999999999999
Q ss_pred cC-CcceecCCcchhHHHHHHHhhcccc------Cc-EEEccHHHHHHH-HhccceEEEEEEcCCChhhHHHHHHHHHHH
Q psy160 165 HR-FPSIYRGDLSEEEEVLQWLITQKTE------DR-IELITRVMLETM-VEETQYLAVYFYKLNCNICDQILEGLEKVD 235 (346)
Q Consensus 165 ~g-~~~~y~g~~~~~~~i~~fi~~~~~~------~~-v~~l~~~~~~~~-~~~~~~~lv~F~~~~c~~c~~~~~~~~~la 235 (346)
+| .++.|.|..+.+ .+.+|+.....+ .. +..++..+++.. .+.+..|+|.||+|||++|+.+.|.|++++
T Consensus 110 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a 188 (383)
T KOG0191|consen 110 PGKKPIDYSGPRNAE-SLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLA 188 (383)
T ss_pred CCCceeeccCcccHH-HHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHH
Confidence 98 588899988754 899999876542 34 778888888885 566789999999999999999999999999
Q ss_pred hhcCc-CceEEEEEc---ChhhhhhCCCccccEEEEEeCCeE--EEeecCccccccchhhhhhhccCC
Q psy160 236 DECDI-YGIHMVKIQ---DPQLAKRYSIKTFPALVYFRNGNP--LIFEGENKILKGTYIGTYISTKAF 297 (346)
Q Consensus 236 ~~~~~-~~i~~~~i~---~~~~~~~~~i~~~Pti~~~~~g~~--~~y~g~~~~~~~~~~~~~i~~~~~ 297 (346)
..++. ..+.++.++ ...++++++|.++||+.+|++|.. ..|.|.|+.+. +..|+.....
T Consensus 189 ~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~---i~~~v~~~~~ 253 (383)
T KOG0191|consen 189 KLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDS---IVSFVEKKER 253 (383)
T ss_pred HHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccccccccHHH---HHHHHHhhcC
Confidence 98863 368888874 678999999999999999998865 45666675333 5555555443
No 7
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.93 E-value=9.1e-25 Score=188.62 Aligned_cols=179 Identities=18% Similarity=0.276 Sum_probs=139.9
Q ss_pred CeecC---CCChhhHHHHHHHHHHHhhhcccCCeEEEcC---ChHHHHhcCCCCCCeEEEEeCCcee--eecCCCCCHHH
Q psy160 1 MYIND---ENCPECDDILEELEHIDGDADQYGIDMVKIS---DTEAAAKYNIINLPSLVYFRKQVPL--LYDGDLFDEEK 72 (346)
Q Consensus 1 v~Fy~---~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~~~~--~y~G~~~~~~~ 72 (346)
+.|++ +||++|+.+.|.++++++.++...+.++++| +++++.+|+|.++||+++|++|... .|.|.... +.
T Consensus 24 ~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~~-~~ 102 (215)
T TIGR02187 24 VVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIPAG-YE 102 (215)
T ss_pred EEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecCCH-HH
Confidence 36888 9999999999999999998865456677775 6899999999999999999998764 58896665 47
Q ss_pred HHHHHhccCCccccCceeecCHHHHHHHHhcCCcE-EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---Chhh
Q psy160 73 ILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFV-TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRY 148 (346)
Q Consensus 73 i~~~i~~~~~p~~~~~v~~l~~~~~~~~~~~~~~~-lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l 148 (346)
+.+|+.....- ......++++..+.+...++++ ++.|+++||++|+.+.+.+++++.... ++.+..+| ++.+
T Consensus 103 l~~~i~~~~~~--~~~~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~~~~~~ 178 (215)
T TIGR02187 103 FAALIEDIVRV--SQGEPGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND--KILGEMIEANENPDL 178 (215)
T ss_pred HHHHHHHHHHh--cCCCCCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCCCCHHH
Confidence 77777654322 1134567777677665545554 555999999999999999999987743 36665555 7889
Q ss_pred HHhhCCCCcceEEEEecCCcceecCCcchhHHHHHHHhh
Q psy160 149 ARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 149 ~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~~ 187 (346)
+++|+|.++||++++.+|. .+.|... .+++.+|+.+
T Consensus 179 ~~~~~V~~vPtl~i~~~~~--~~~G~~~-~~~l~~~l~~ 214 (215)
T TIGR02187 179 AEKYGVMSVPKIVINKGVE--EFVGAYP-EEQFLEYILS 214 (215)
T ss_pred HHHhCCccCCEEEEecCCE--EEECCCC-HHHHHHHHHh
Confidence 9999999999999997765 3888777 4489998865
No 8
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.92 E-value=2.8e-24 Score=185.59 Aligned_cols=173 Identities=17% Similarity=0.245 Sum_probs=136.3
Q ss_pred CCcEEEEEEC---CCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCCcc--eecCCc
Q psy160 104 NEFVTVFFYE---TDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFPS--IYRGDL 175 (346)
Q Consensus 104 ~~~~lv~F~~---~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~~--~y~g~~ 175 (346)
+...++.|++ +||++|+.+.|.++++++.+.+..+.++++| .++++++|+|.++||+++|++|+.. +|.|..
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~ 98 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIP 98 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecC
Confidence 3455777888 9999999999999999998865557788876 7899999999999999999998853 688977
Q ss_pred chhHHHHHHHhhccc-cCcEEEccHHHHHHHHhccceEE-EEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cC
Q psy160 176 SEEEEVLQWLITQKT-EDRIELITRVMLETMVEETQYLA-VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QD 250 (346)
Q Consensus 176 ~~~~~i~~fi~~~~~-~~~v~~l~~~~~~~~~~~~~~~l-v~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~ 250 (346)
+.. ++.+|+..... ......++.+..+.+.+.++++. +.|+++||++|+.+.+.+++++.... .+.+..+ .+
T Consensus 99 ~~~-~l~~~i~~~~~~~~~~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~~~ 175 (215)
T TIGR02187 99 AGY-EFAALIEDIVRVSQGEPGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND--KILGEMIEANEN 175 (215)
T ss_pred CHH-HHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCCCC
Confidence 744 78888776532 11334566666666555455544 44999999999999999999998743 5777666 67
Q ss_pred hhhhhhCCCccccEEEEEeCCeEEEeecCcc
Q psy160 251 PQLAKRYSIKTFPALVYFRNGNPLIFEGENK 281 (346)
Q Consensus 251 ~~~~~~~~i~~~Pti~~~~~g~~~~y~g~~~ 281 (346)
++++++|+|.++||++++++|+. +.|...
T Consensus 176 ~~~~~~~~V~~vPtl~i~~~~~~--~~G~~~ 204 (215)
T TIGR02187 176 PDLAEKYGVMSVPKIVINKGVEE--FVGAYP 204 (215)
T ss_pred HHHHHHhCCccCCEEEEecCCEE--EECCCC
Confidence 89999999999999999988863 778665
No 9
>KOG4277|consensus
Probab=99.90 E-value=6.9e-23 Score=175.10 Aligned_cols=260 Identities=16% Similarity=0.266 Sum_probs=191.3
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccC--CeEEEcC---ChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYG--IDMVKIS---DTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILT 75 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~--i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~ 75 (346)
|.||||||+||+++.|.|.++--++++.| |.+.++| -+.++++++|++|||+.+|+++....|.|++.. ++|++
T Consensus 48 VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYRG~R~K-d~iie 126 (468)
T KOG4277|consen 48 VDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYRGGREK-DAIIE 126 (468)
T ss_pred EEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeecCCCccH-HHHHH
Confidence 68999999999999999999999997665 6777776 479999999999999999999999999999887 69999
Q ss_pred HHhccCCccccCceeecCH--HHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe--CChhhHH-
Q psy160 76 WLTSQDVFEIKNEIEEVNR--RMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM--ADPRYAR- 150 (346)
Q Consensus 76 ~i~~~~~p~~~~~v~~l~~--~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~~~~l~~- 150 (346)
|...-..| .+..+++ ..|+.+-..+.+.+|+|.+...+ +...+..+|... +.+++. ....++-
T Consensus 127 FAhR~a~a----iI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~P----L~d~fidAASe~----~~~a~FfSaseeVaPe 194 (468)
T KOG4277|consen 127 FAHRCAAA----IIEPINENQIEFEHLQARHQPFFVFFGTGEGP----LFDAFIDAASEK----FSVARFFSASEEVAPE 194 (468)
T ss_pred HHHhcccc----eeeecChhHHHHHHHhhccCceEEEEeCCCCc----HHHHHHHHhhhh----eeeeeeeccccccCCc
Confidence 99998887 7777775 45566656678889999875544 445566666552 322221 1223333
Q ss_pred hhCCCCcceEEEEecCC-cceecCCcchhHHHHHHHhhccccCcEEEccHHHHHHHHhccceEEEEEEcC-----CChhh
Q psy160 151 KWGVTKLPAVVYFRHRF-PSIYRGDLSEEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKL-----NCNIC 224 (346)
Q Consensus 151 ~~~i~~~Ptl~~~~~g~-~~~y~g~~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~-----~c~~c 224 (346)
.-..+..|.+.+|++.. .+..+|.. + .+.+|+++..-|..+ ..++..+.++-.+.+.+.+..-.. ...+.
T Consensus 195 ~~~~kempaV~VFKDetf~i~de~dd--~-dLseWinRERf~~fL-a~dgflL~EiG~sGKLVaLaVidEkhk~nns~eh 270 (468)
T KOG4277|consen 195 ENDAKEMPAVAVFKDETFEIEDEGDD--E-DLSEWINRERFPGFL-AADGFLLAEIGASGKLVALAVIDEKHKFNNSSEH 270 (468)
T ss_pred ccchhhccceEEEccceeEEEecCch--h-HHHHHHhHhhccchh-hcccchHHHhCcCCceEEEEEeccccccCCcchh
Confidence 23356779999998875 33345543 3 899999998877544 556667777766777766655432 34556
Q ss_pred HHHHHHHHHHHhhcCcC-----ceEEEEEcChhhhhhCCC--ccccEEEEEeCCeEEEee
Q psy160 225 DQILEGLEKVDDECDIY-----GIHMVKIQDPQLAKRYSI--KTFPALVYFRNGNPLIFE 277 (346)
Q Consensus 225 ~~~~~~~~~la~~~~~~-----~i~~~~i~~~~~~~~~~i--~~~Pti~~~~~g~~~~y~ 277 (346)
..+..+.+++|+.+++. +++|+.++..+++...-+ -+.|++++|.-.+...|-
T Consensus 271 ~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD~~nqilM~als~P~l~i~NtsnqeYfL 330 (468)
T KOG4277|consen 271 REFHKIAEEAAKDLRDHPDFHNDFQFAHLDGNDLANQILMAALSEPHLFIFNTSNQEYFL 330 (468)
T ss_pred HHHHHHHHHHHHHHHhChhhhhhceeeccchhHHHHHHHHHhhcCCeEEEEecCchheee
Confidence 78899999999988532 588999977777766533 357999999866544443
No 10
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.88 E-value=2.3e-21 Score=186.85 Aligned_cols=220 Identities=18% Similarity=0.253 Sum_probs=174.3
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCC--CcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNM--DITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~--~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
.|.+++.++|++++.+++.++|.||||||++|+++.|.|.++++.+.+. ++.++.+| +..+|++++|.++||+++
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI 81 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence 5788999999999999999999999999999999999999999988543 48888876 678999999999999999
Q ss_pred EecCCc--ceecCCcchhHHHHHHHhhccccCcEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc
Q psy160 163 FRHRFP--SIYRGDLSEEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDI 240 (346)
Q Consensus 163 ~~~g~~--~~y~g~~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~ 240 (346)
|++|.. ..|.|.++.. +|.+|+.+...+.....-+.++++.++..+...+|.|+..- -......+.++|..+..
T Consensus 82 ~~~g~~~~~~~~g~~~~~-~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~---~~~~~~~~~~~a~~~~~ 157 (462)
T TIGR01130 82 FRNGEDSVSDYNGPRDAD-GIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDL---DSELNDTFLSVAEKLRD 157 (462)
T ss_pred EeCCccceeEecCCCCHH-HHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCC---CcHHHHHHHHHHHHhhh
Confidence 999885 7899999855 89999999988766555568999998888888888887642 23677889999999875
Q ss_pred CceE-EEEEcChhhhhhCCCccccEEEEEeCC-e---EEEeecCccccccchhhhhhhccCCCCCCcccCCCCCCccch
Q psy160 241 YGIH-MVKIQDPQLAKRYSIKTFPALVYFRNG-N---PLIFEGENKILKGTYIGTYISTKAFSLIPFCFSEKHPGAFQT 314 (346)
Q Consensus 241 ~~i~-~~~i~~~~~~~~~~i~~~Pti~~~~~g-~---~~~y~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 314 (346)
... ++...+..+.+.+++. -|++++|+.. . ...|.|....+. ..|..|+.....|.+++++.++...++..
T Consensus 158 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~fi~~~~~p~v~~~~~~~~~~~~~~ 233 (462)
T TIGR01130 158 -VYFFFAHSSDVAAFAKLGAF-PDSVVLFKPKDEDEKFSKVDGEMDTDV-SDLEKFIRAESLPLVGEFTQETAAKYFES 233 (462)
T ss_pred -ccceEEecCCHHHHhhcCCC-CCcEEEecccccccccccccCcccCCH-HHHHHHHHHcCCCceEeeCCcchhhHhCC
Confidence 333 4444666777888765 3666666532 1 235777664322 23888999999999999999876655543
No 11
>KOG4277|consensus
Probab=99.88 E-value=5.1e-22 Score=169.81 Aligned_cols=212 Identities=16% Similarity=0.262 Sum_probs=148.7
Q ss_pred cCceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCC--CcEEEEeC---ChhhHHhhCCCCcceE
Q psy160 86 KNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNM--DITFVKMA---DPRYARKWGVTKLPAV 160 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~--~i~~~~~~---~~~l~~~~~i~~~Ptl 160 (346)
+..|..|+++-.+. +....|+|.||||||+||+++.|.|.++.-.++.. .|.+++.| .+.++.++||++||||
T Consensus 27 pt~VeDLddkFkdn--kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTI 104 (468)
T KOG4277|consen 27 PTAVEDLDDKFKDN--KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTI 104 (468)
T ss_pred chhhhhhhHHhhhc--ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceE
Confidence 34555555443221 34578999999999999999999999999998554 47778776 7899999999999999
Q ss_pred EEEecCCcceecCCcchhHHHHHHHhhccccCcEEEccH--HHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhc
Q psy160 161 VYFRHRFPSIYRGDLSEEEEVLQWLITQKTEDRIELITR--VMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDEC 238 (346)
Q Consensus 161 ~~~~~g~~~~y~g~~~~~~~i~~fi~~~~~~~~v~~l~~--~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~ 238 (346)
.+|+++..+.|.|.+.++ +|++|..+-..+ .+..++. ..+..+.+.+++.+|.|.+.- + .+...+.++|...
T Consensus 105 k~~kgd~a~dYRG~R~Kd-~iieFAhR~a~a-iI~pi~enQ~~fehlq~Rhq~ffVf~Gtge-~---PL~d~fidAASe~ 178 (468)
T KOG4277|consen 105 KFFKGDHAIDYRGGREKD-AIIEFAHRCAAA-IIEPINENQIEFEHLQARHQPFFVFFGTGE-G---PLFDAFIDAASEK 178 (468)
T ss_pred EEecCCeeeecCCCccHH-HHHHHHHhcccc-eeeecChhHHHHHHHhhccCceEEEEeCCC-C---cHHHHHHHHhhhh
Confidence 999999999999999965 999999998766 5555654 455556778899999887533 3 2345556665542
Q ss_pred CcCceEEEEEcChhhhhhCCCccccEEEEEeCCeEEEe-ecCccccccchhhhhhhccCCCCCCcccCCCCCCc
Q psy160 239 DIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPLIF-EGENKILKGTYIGTYISTKAFSLIPFCFSEKHPGA 311 (346)
Q Consensus 239 ~~~~i~~~~i~~~~~~~~~~i~~~Pti~~~~~g~~~~y-~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 311 (346)
-. -..|...++.-....-..+..|.+.+|++.....| +|.. ..+..|++++++|.+-..+.-...++
T Consensus 179 ~~-~a~FfSaseeVaPe~~~~kempaV~VFKDetf~i~de~dd-----~dLseWinRERf~~fLa~dgflL~Ei 246 (468)
T KOG4277|consen 179 FS-VARFFSASEEVAPEENDAKEMPAVAVFKDETFEIEDEGDD-----EDLSEWINRERFPGFLAADGFLLAEI 246 (468)
T ss_pred ee-eeeeeccccccCCcccchhhccceEEEccceeEEEecCch-----hHHHHHHhHhhccchhhcccchHHHh
Confidence 11 23333322222222233456799999999875444 4442 22888999999886655555443333
No 12
>PTZ00102 disulphide isomerase; Provisional
Probab=99.85 E-value=3.6e-20 Score=179.34 Aligned_cols=213 Identities=15% Similarity=0.224 Sum_probs=162.6
Q ss_pred cCceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccC--CCcEEEEeC---ChhhHHhhCCCCcceE
Q psy160 86 KNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDN--MDITFVKMA---DPRYARKWGVTKLPAV 160 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~--~~i~~~~~~---~~~l~~~~~i~~~Ptl 160 (346)
++.+..++.++|++++.+++.++|.||+|||++|+++.|.|.++++.+.. .++.++.+| +..+|++|+|+++||+
T Consensus 31 ~~~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~ 110 (477)
T PTZ00102 31 SEHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTI 110 (477)
T ss_pred CCCcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEE
Confidence 45789999999999999999999999999999999999999999988843 358888876 7899999999999999
Q ss_pred EEEecCCcceecCCcchhHHHHHHHhhccccCcEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc
Q psy160 161 VYFRHRFPSIYRGDLSEEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDI 240 (346)
Q Consensus 161 ~~~~~g~~~~y~g~~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~ 240 (346)
++|++|....|.|.++.+ +|.+|+.+...|.....-+.+......+....+++.++.. ....+...+.++|..+++
T Consensus 111 ~~~~~g~~~~y~g~~~~~-~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~f~~~a~~~~~ 186 (477)
T PTZ00102 111 KFFNKGNPVNYSGGRTAD-GIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTS---KDSELYKKFEEVADKHRE 186 (477)
T ss_pred EEEECCceEEecCCCCHH-HHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEecc---CCcHHHHHHHHHHHhccc
Confidence 999999877999999855 9999999998886554444555554444555555555543 234677888999999876
Q ss_pred CceEEEEEcChhhhhhCCCccccEEEEEeCC-eEEEeecCccccccchhhhhhhccCCCCCCcccCCCCCCccchh
Q psy160 241 YGIHMVKIQDPQLAKRYSIKTFPALVYFRNG-NPLIFEGENKILKGTYIGTYISTKAFSLIPFCFSEKHPGAFQTE 315 (346)
Q Consensus 241 ~~i~~~~i~~~~~~~~~~i~~~Pti~~~~~g-~~~~y~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 315 (346)
...|+.+.+. ..|.+.+++.. ....+.++.+ . .-+..|++....|.+.+++.++...++.++
T Consensus 187 -~~~F~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~--~-~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~ 249 (477)
T PTZ00102 187 -HAKFFVKKHE---------GKNKIYVLHKDEEGVELFMGKT--K-EELEEFVSTESFPLFAEINAENYRRYISSG 249 (477)
T ss_pred -cceEEEEcCC---------CCCcEEEEecCCCCcccCCCCC--H-HHHHHHHHHcCCCceeecCccchHHHhcCC
Confidence 5666654222 23667777653 3333333332 2 227889999999999999999877666543
No 13
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.82 E-value=7.6e-20 Score=140.47 Aligned_cols=97 Identities=13% Similarity=0.262 Sum_probs=85.1
Q ss_pred CceeecCHHHHHHH---HhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhH-HhhCCCCcce
Q psy160 87 NEIEEVNRRMLDKL---LEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYA-RKWGVTKLPA 159 (346)
Q Consensus 87 ~~v~~l~~~~~~~~---~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~-~~~~i~~~Pt 159 (346)
..|.++++++|++. +.+++.++|.||||||++|+.+.|.|+++|+.+++. +.++++| +.++| ++|+|+++||
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~~~~l~~~~~~I~~~PT 87 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWWPQGKCRKQKHFFYFPV 87 (113)
T ss_pred CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCCChHHHHHhcCCcccCE
Confidence 47999999999987 567789999999999999999999999999998653 7778776 66799 5899999999
Q ss_pred EEEEecCC-cceecCCcchhHHHHHHH
Q psy160 160 VVYFRHRF-PSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 160 l~~~~~g~-~~~y~g~~~~~~~i~~fi 185 (346)
+++|++|+ +..|.|.++.+ .|+.|+
T Consensus 88 l~lf~~g~~~~~y~G~~~~~-~i~~~~ 113 (113)
T cd03006 88 IHLYYRSRGPIEYKGPMRAP-YMEKFV 113 (113)
T ss_pred EEEEECCccceEEeCCCCHH-HHHhhC
Confidence 99999987 77899999865 888874
No 14
>KOG0912|consensus
Probab=99.82 E-value=2.7e-19 Score=153.54 Aligned_cols=220 Identities=19% Similarity=0.194 Sum_probs=156.7
Q ss_pred cCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhcc----CCCcEEEEeC---ChhhHHhhCCCCcceEEEEe
Q psy160 92 VNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETD----NMDITFVKMA---DPRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 92 l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~----~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 164 (346)
++.+|++.++.++..++|.|||.||+.++.+.|.|+++|..++ ..++.++++| +..++.+|.|+.|||+.+|+
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 4678899999999999999999999999999999999999882 2358888887 77899999999999999999
Q ss_pred cCCc--ceecCCcchhHHHHHHHhhccccCcEEEccHHHHHHHHh-ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcC
Q psy160 165 HRFP--SIYRGDLSEEEEVLQWLITQKTEDRIELITRVMLETMVE-ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIY 241 (346)
Q Consensus 165 ~g~~--~~y~g~~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~~~-~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~ 241 (346)
+|.. ..|.|.++.+ ++.+|++.+.+.+.-.-.+..+++.+.. +++.++..|-....+. ...+.++|..+++
T Consensus 81 nG~~~~rEYRg~RsVe-aL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspe----y~~~~kva~~lr~- 154 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVE-ALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPE----YDNLRKVASLLRD- 154 (375)
T ss_pred ccchhhhhhccchhHH-HHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCch----HHHHHHHHHHHhh-
Confidence 9993 3699999955 9999999998764222223344444433 4555655565455443 4577788888875
Q ss_pred ceEEEEEcChhhhhhCCCccccEEEEEeCCeE---EEeecCccccccchhhhhhhccCCCCCCcccCCCCCCccchhhHH
Q psy160 242 GIHMVKIQDPQLAKRYSIKTFPALVYFRNGNP---LIFEGENKILKGTYIGTYISTKAFSLIPFCFSEKHPGAFQTELVL 318 (346)
Q Consensus 242 ~i~~~~i~~~~~~~~~~i~~~Pti~~~~~g~~---~~y~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (346)
+..|.-- -.++.....-.+.+ +++|+++.. ..|.|.+++-+ .+..||+....|++.|+|-+|..++ +.
T Consensus 155 dc~f~V~-~gD~~~~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~--el~~Wi~dKcvpLVREiTFeN~EEL-----tE 225 (375)
T KOG0912|consen 155 DCVFLVG-FGDLLKPHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFD--ELKQWIQDKCVPLVREITFENAEEL-----TE 225 (375)
T ss_pred ccEEEee-ccccccCCCCCCCc-eEEeCCCcCCcCcccccccccHH--HHHHHHHhcchhhhhhhhhccHHHH-----hh
Confidence 5444321 11222222222333 455555432 25999988533 3889999999999999999985544 44
Q ss_pred hhcceeEE
Q psy160 319 RSLKIKII 326 (346)
Q Consensus 319 ~~~~~~~~ 326 (346)
.++|..|.
T Consensus 226 EGlPflIL 233 (375)
T KOG0912|consen 226 EGLPFLIL 233 (375)
T ss_pred cCCceEEE
Confidence 45555543
No 15
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.79 E-value=6.8e-19 Score=133.60 Aligned_cols=96 Identities=24% Similarity=0.381 Sum_probs=85.0
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEe
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 164 (346)
.+.+++.++|++.+.++++++|.||+|||++|+.+.|.|+++++.+++. +.|+.+| ++.+|++++|+++||+++|+
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 80 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCGDDRMLCRSQGVNSYPSLYVFP 80 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCCccHHHHHHcCCCccCEEEEEc
Confidence 5788999999999988899999999999999999999999999998654 7777766 77899999999999999999
Q ss_pred cCC-cceecCCcchhHHHHHHH
Q psy160 165 HRF-PSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 165 ~g~-~~~y~g~~~~~~~i~~fi 185 (346)
+|+ ...|.|.++.+ +|.+|.
T Consensus 81 ~g~~~~~~~G~~~~~-~l~~f~ 101 (101)
T cd03003 81 SGMNPEKYYGDRSKE-SLVKFA 101 (101)
T ss_pred CCCCcccCCCCCCHH-HHHhhC
Confidence 987 56799998855 888773
No 16
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.78 E-value=2.1e-18 Score=132.61 Aligned_cols=97 Identities=23% Similarity=0.378 Sum_probs=84.6
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccC-----CCcEEEEeC---ChhhHHhhCCCCcce
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDN-----MDITFVKMA---DPRYARKWGVTKLPA 159 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~-----~~i~~~~~~---~~~l~~~~~i~~~Pt 159 (346)
.|.+++.++|++.+.++++++|.||+|||++|+++.|.|+++++.+++ ..+.++.+| ++++|++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt 81 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT 81 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCE
Confidence 578899999999998889999999999999999999999999987632 137777765 789999999999999
Q ss_pred EEEEecCC--cceecCCcchhHHHHHHH
Q psy160 160 VVYFRHRF--PSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 160 l~~~~~g~--~~~y~g~~~~~~~i~~fi 185 (346)
+++|++|+ ...|.|.++.+ +|.+|+
T Consensus 82 l~~~~~g~~~~~~~~g~~~~~-~l~~fi 108 (108)
T cd02996 82 LKLFRNGMMMKREYRGQRSVE-ALAEFV 108 (108)
T ss_pred EEEEeCCcCcceecCCCCCHH-HHHhhC
Confidence 99999998 36799988855 899885
No 17
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.77 E-value=2.8e-18 Score=131.01 Aligned_cols=95 Identities=11% Similarity=0.235 Sum_probs=83.3
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEEC--CCCh---hHHHHHHHHHHHHhhccCCCcEEEEeC--------ChhhHHhhCC
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYE--TDHK---DSVKVLERLEKIDGETDNMDITFVKMA--------DPRYARKWGV 154 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~--~~C~---~c~~~~~~~~~~a~~~~~~~i~~~~~~--------~~~l~~~~~i 154 (346)
.+.+|+++||++.+.+++.+||.||| |||+ ||+++.|++.+++.. +.++.+| +.+||++|+|
T Consensus 2 g~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~-----v~lakVd~~d~~~~~~~~L~~~y~I 76 (116)
T cd03007 2 GCVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD-----LLVAEVGIKDYGEKLNMELGERYKL 76 (116)
T ss_pred CeeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc-----eEEEEEecccccchhhHHHHHHhCC
Confidence 46789999999999999999999999 9999 999999999988864 6666665 3789999999
Q ss_pred C--CcceEEEEecCC---cceecCC-cchhHHHHHHHhhc
Q psy160 155 T--KLPAVVYFRHRF---PSIYRGD-LSEEEEVLQWLITQ 188 (346)
Q Consensus 155 ~--~~Ptl~~~~~g~---~~~y~g~-~~~~~~i~~fi~~~ 188 (346)
+ +||||++|++|. +..|+|. ++.+ +|++|++++
T Consensus 77 ~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~-~lv~~v~~~ 115 (116)
T cd03007 77 DKESYPVIYLFHGGDFENPVPYSGADVTVD-ALQRFLKGN 115 (116)
T ss_pred CcCCCCEEEEEeCCCcCCCccCCCCcccHH-HHHHHHHhc
Confidence 9 999999999884 6789996 8855 999999875
No 18
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.77 E-value=3.7e-18 Score=129.82 Aligned_cols=98 Identities=20% Similarity=0.462 Sum_probs=88.1
Q ss_pred eeecCHHHHHHHHhc-CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEe
Q psy160 89 IEEVNRRMLDKLLEE-NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 89 v~~l~~~~~~~~~~~-~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 164 (346)
|..+|+++|++.+.+ +++++|+||++||++|+.+.|.|+++++.+.+ ++.++.+| ++.+|++|+|+++||+++|+
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 79 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDENKELCKKYGVKSVPTIIFFK 79 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTSHHHHHHTTCSSSSEEEEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhccchhhhccCCCCCCEEEEEE
Confidence 568899999999987 79999999999999999999999999999876 68888877 77899999999999999999
Q ss_pred cCC-cceecCCcchhHHHHHHHhhc
Q psy160 165 HRF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 165 ~g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
+|+ ...|.|.++.+ +|.+||+++
T Consensus 80 ~g~~~~~~~g~~~~~-~l~~~i~~~ 103 (103)
T PF00085_consen 80 NGKEVKRYNGPRNAE-SLIEFIEKH 103 (103)
T ss_dssp TTEEEEEEESSSSHH-HHHHHHHHH
T ss_pred CCcEEEEEECCCCHH-HHHHHHHcC
Confidence 998 44799998844 999999864
No 19
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.77 E-value=3.1e-18 Score=131.55 Aligned_cols=91 Identities=13% Similarity=0.166 Sum_probs=80.4
Q ss_pred CcEEEccHHHHHHH---HhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhh-hhCCCccccE
Q psy160 192 DRIELITRVMLETM---VEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLA-KRYSIKTFPA 264 (346)
Q Consensus 192 ~~v~~l~~~~~~~~---~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~-~~~~i~~~Pt 264 (346)
+.|..++.++|+++ ++++++++|.||||||++|+.+.|.++++|+.+++ .+.|+++ .+.++| ++|+|.++||
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-~v~~~~Vd~d~~~~l~~~~~~I~~~PT 87 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD-QVLFVAINCWWPQGKCRKQKHFFYFPV 87 (113)
T ss_pred CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCCChHHHHHhcCCcccCE
Confidence 46779999999986 57889999999999999999999999999999986 6889999 467788 5899999999
Q ss_pred EEEEeCCe-EEEeecCcccc
Q psy160 265 LVYFRNGN-PLIFEGENKIL 283 (346)
Q Consensus 265 i~~~~~g~-~~~y~g~~~~~ 283 (346)
+++|++|+ +..|.|.++.+
T Consensus 88 l~lf~~g~~~~~y~G~~~~~ 107 (113)
T cd03006 88 IHLYYRSRGPIEYKGPMRAP 107 (113)
T ss_pred EEEEECCccceEEeCCCCHH
Confidence 99999986 67899998743
No 20
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.77 E-value=4.3e-18 Score=129.16 Aligned_cols=97 Identities=18% Similarity=0.286 Sum_probs=84.2
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEe
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 164 (346)
.|.+++.++|++.++. .++|.||++||++|+.+.|.|+++++.+...++.++.+| ++.+|++|+|+++||+++|+
T Consensus 2 ~v~~l~~~~f~~~~~~--~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02994 2 NVVELTDSNWTLVLEG--EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAK 79 (101)
T ss_pred ceEEcChhhHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeC
Confidence 5788999999998743 389999999999999999999999998765567778776 67899999999999999999
Q ss_pred cCCcceecCCcchhHHHHHHHhh
Q psy160 165 HRFPSIYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 165 ~g~~~~y~g~~~~~~~i~~fi~~ 187 (346)
+|+...|.|.++.+ +|.+|+++
T Consensus 80 ~g~~~~~~G~~~~~-~l~~~i~~ 101 (101)
T cd02994 80 DGVFRRYQGPRDKE-DLISFIEE 101 (101)
T ss_pred CCCEEEecCCCCHH-HHHHHHhC
Confidence 99877899998854 89999864
No 21
>KOG0912|consensus
Probab=99.77 E-value=9.3e-18 Score=144.12 Aligned_cols=224 Identities=17% Similarity=0.183 Sum_probs=156.2
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhc----ccCCeEEEcC---ChHHHHhcCCCCCCeEEEEeCCcee--eecCCCCCHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDAD----QYGIDMVKIS---DTEAAAKYNIINLPSLVYFRKQVPL--LYDGDLFDEE 71 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~----~~~i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~~~~--~y~G~~~~~~ 71 (346)
|.|||+||+-++.+.|.|+++|..+. +..+.++.+| +..++++|.|.+|||+.+|++|.-. .|.|.++. +
T Consensus 18 v~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~~~rEYRg~RsV-e 96 (375)
T KOG0912|consen 18 VNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEMMKREYRGQRSV-E 96 (375)
T ss_pred eeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccchhhhhhccchhH-H
Confidence 67999999999999999999999882 2347777776 5689999999999999999999643 69999988 4
Q ss_pred HHHHHHhccCCccccCceeecC-HHHHHHHHhcC-CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhH
Q psy160 72 KILTWLTSQDVFEIKNEIEEVN-RRMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYA 149 (346)
Q Consensus 72 ~i~~~i~~~~~p~~~~~v~~l~-~~~~~~~~~~~-~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~ 149 (346)
++++|+.++..- .+.+.. .+.+..+...+ ..++.+|-....+.-. .++++|..++.. ..|.. -..++.
T Consensus 97 aL~efi~kq~s~----~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey~----~~~kva~~lr~d-c~f~V-~~gD~~ 166 (375)
T KOG0912|consen 97 ALIEFIEKQLSD----PINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEYD----NLRKVASLLRDD-CVFLV-GFGDLL 166 (375)
T ss_pred HHHHHHHHHhcc----HHHHHHhHHHHHhhhccccceEEEEeccCCCchHH----HHHHHHHHHhhc-cEEEe-eccccc
Confidence 999999998775 566664 35555555433 4555556555655443 455666665332 22221 111122
Q ss_pred HhhCCCCcceEEEEecCCc---ceecCCcchhHHHHHHHhhccccCcEEEccHHHHHHHHhccceEEEEEEcCCChhhHH
Q psy160 150 RKWGVTKLPAVVYFRHRFP---SIYRGDLSEEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQ 226 (346)
Q Consensus 150 ~~~~i~~~Ptl~~~~~g~~---~~y~g~~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~ 226 (346)
....-.+.+ +++|+.+.. ..|.|..+.-+.+.+|+.+..-| -|.++|-+|.+++..+..|.+|+|+.+.-...
T Consensus 167 ~~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvp-LVREiTFeN~EELtEEGlPflILf~~kdD~~s-- 242 (375)
T KOG0912|consen 167 KPHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVP-LVREITFENAEELTEEGLPFLILFRKKDDKES-- 242 (375)
T ss_pred cCCCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcchh-hhhhhhhccHHHHhhcCCceEEEEecCCcccH--
Confidence 211112222 455554432 25999999888999999999887 77899999999999999999999998754332
Q ss_pred HHHHHHHHHhhcC
Q psy160 227 ILEGLEKVDDECD 239 (346)
Q Consensus 227 ~~~~~~~la~~~~ 239 (346)
....-..+++++.
T Consensus 243 ~k~F~~aI~ReL~ 255 (375)
T KOG0912|consen 243 EKIFKNAIARELD 255 (375)
T ss_pred HHHHHHHHHHHhh
Confidence 2222334566654
No 22
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.75 E-value=1.3e-17 Score=127.27 Aligned_cols=97 Identities=12% Similarity=0.177 Sum_probs=82.6
Q ss_pred ceeecCHHHHHHHHhc-CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEE
Q psy160 88 EIEEVNRRMLDKLLEE-NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYF 163 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~-~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~ 163 (346)
.+.+++.++|++.+.+ +++++|.||++||++|+.+.|.|+++++.+.+ .+.++.+| ++++|++++|+++||+++|
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 80 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG-KVKVGSVDCQKYESLCQQANIRAYPTIRLY 80 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCchHHHHHHcCCCcccEEEEE
Confidence 5778999999998754 57899999999999999999999999999854 37777776 6789999999999999999
Q ss_pred ecC-C-cceecCCcchhHHHHHHH
Q psy160 164 RHR-F-PSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 164 ~~g-~-~~~y~g~~~~~~~i~~fi 185 (346)
++| + ...|.|..++.++|.+|+
T Consensus 81 ~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 81 PGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred cCCCCCceEccCCCCCHHHHHhhC
Confidence 987 5 667999876234888875
No 23
>KOG0910|consensus
Probab=99.73 E-value=1.3e-17 Score=130.60 Aligned_cols=98 Identities=20% Similarity=0.362 Sum_probs=83.6
Q ss_pred cEEEccHHHHHH-HHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEE
Q psy160 193 RIELITRVMLET-MVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYF 268 (346)
Q Consensus 193 ~v~~l~~~~~~~-~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~ 268 (346)
.+..++.++|++ +++++.|++|.|||+||+||+.+.|.+++++..+.+ .+.++++ ++.+++.+|+|+.+||+++|
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g-~~k~~kvdtD~~~ela~~Y~I~avPtvlvf 122 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG-KFKLYKVDTDEHPELAEDYEISAVPTVLVF 122 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC-eEEEEEEccccccchHhhcceeeeeEEEEE
Confidence 455778899988 578899999999999999999999999999999987 8999999 78899999999999999999
Q ss_pred eCCeEE-EeecCccccccchhhhhhhc
Q psy160 269 RNGNPL-IFEGENKILKGTYIGTYIST 294 (346)
Q Consensus 269 ~~g~~~-~y~g~~~~~~~~~~~~~i~~ 294 (346)
++|+.. ++-|..+. +.+..+++.
T Consensus 123 knGe~~d~~vG~~~~---~~l~~~i~k 146 (150)
T KOG0910|consen 123 KNGEKVDRFVGAVPK---EQLRSLIKK 146 (150)
T ss_pred ECCEEeeeecccCCH---HHHHHHHHH
Confidence 999876 56666643 225555543
No 24
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.73 E-value=2.8e-17 Score=124.73 Aligned_cols=89 Identities=21% Similarity=0.406 Sum_probs=79.6
Q ss_pred cEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEe
Q psy160 193 RIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~ 269 (346)
.+..++.++|++.++++++++|.||++||++|+.+.|.++++|+.+++ .+.|+++ .++.+|++++|+++||+++|+
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 80 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDDRMLCRSQGVNSYPSLYVFP 80 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCccHHHHHHcCCCccCEEEEEc
Confidence 456889999999888889999999999999999999999999999986 6889888 678999999999999999999
Q ss_pred CCe-EEEeecCccc
Q psy160 270 NGN-PLIFEGENKI 282 (346)
Q Consensus 270 ~g~-~~~y~g~~~~ 282 (346)
+|+ ...|.|.++.
T Consensus 81 ~g~~~~~~~G~~~~ 94 (101)
T cd03003 81 SGMNPEKYYGDRSK 94 (101)
T ss_pred CCCCcccCCCCCCH
Confidence 996 4568888763
No 25
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.71 E-value=9.5e-17 Score=123.47 Aligned_cols=97 Identities=13% Similarity=0.312 Sum_probs=80.8
Q ss_pred ceeecCHHHHHHHHh---cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC----ChhhHH-hhCCCCcce
Q psy160 88 EIEEVNRRMLDKLLE---ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYAR-KWGVTKLPA 159 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~---~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----~~~l~~-~~~i~~~Pt 159 (346)
.|.+++.++|+.++. ++++++|.||++||++|+++.|.|+++++.+++.++.++.++ ...+|. .++|+++||
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 578999999999984 458999999999999999999999999999875557676654 356786 599999999
Q ss_pred EEEEecCC--cceecCC-cchhHHHHHHH
Q psy160 160 VVYFRHRF--PSIYRGD-LSEEEEVLQWL 185 (346)
Q Consensus 160 l~~~~~g~--~~~y~g~-~~~~~~i~~fi 185 (346)
+++|.+|. +..|.|. ++.+ +|+.|+
T Consensus 82 i~~f~~~~~~~~~y~g~~~~~~-~l~~f~ 109 (109)
T cd02993 82 ILFFPKNSRQPIKYPSEQRDVD-SLLMFV 109 (109)
T ss_pred EEEEcCCCCCceeccCCCCCHH-HHHhhC
Confidence 99998764 6789995 6644 898885
No 26
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.71 E-value=8.5e-17 Score=124.41 Aligned_cols=103 Identities=14% Similarity=0.335 Sum_probs=84.1
Q ss_pred ccCceeecCHHHHHHHHhcCC-cEEEEEECCCChh--HH--HHHHHHHHHHhhc-cCCCcEEEEeC---ChhhHHhhCCC
Q psy160 85 IKNEIEEVNRRMLDKLLEENE-FVTVFFYETDHKD--SV--KVLERLEKIDGET-DNMDITFVKMA---DPRYARKWGVT 155 (346)
Q Consensus 85 ~~~~v~~l~~~~~~~~~~~~~-~~lv~F~~~~C~~--c~--~~~~~~~~~a~~~-~~~~i~~~~~~---~~~l~~~~~i~ 155 (346)
+.+.|.++|++||++.+.+++ ++++.|+++||++ |+ .+.|.+.++|.++ +..++.++++| ++.+|++|||+
T Consensus 7 ~~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~ 86 (120)
T cd03065 7 GKDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLD 86 (120)
T ss_pred CCcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCc
Confidence 445889999999999887775 5666667777765 99 6777777777765 34458888876 88999999999
Q ss_pred CcceEEEEecCCcceecCCcchhHHHHHHHhhc
Q psy160 156 KLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 156 ~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~~~ 188 (346)
++||+++|++|+.+.|.|.++.+ .|.+|+.+.
T Consensus 87 ~iPTl~lfk~G~~v~~~G~~~~~-~l~~~l~~~ 118 (120)
T cd03065 87 EEDSIYVFKDDEVIEYDGEFAAD-TLVEFLLDL 118 (120)
T ss_pred cccEEEEEECCEEEEeeCCCCHH-HHHHHHHHH
Confidence 99999999999977899999855 899998753
No 27
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.70 E-value=1.1e-16 Score=123.01 Aligned_cols=90 Identities=21% Similarity=0.409 Sum_probs=78.6
Q ss_pred cEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc-----CceEEEEE---cChhhhhhCCCccccE
Q psy160 193 RIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDI-----YGIHMVKI---QDPQLAKRYSIKTFPA 264 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~-----~~i~~~~i---~~~~~~~~~~i~~~Pt 264 (346)
.+..++.++|++.++++++++|.||+|||++|+.+.|.|+++++.+++ ..+.++.+ .+.+++++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt 81 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT 81 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCE
Confidence 466889999999998899999999999999999999999999988642 14888888 5789999999999999
Q ss_pred EEEEeCCe--EEEeecCccc
Q psy160 265 LVYFRNGN--PLIFEGENKI 282 (346)
Q Consensus 265 i~~~~~g~--~~~y~g~~~~ 282 (346)
+++|++|+ ...|.|.++.
T Consensus 82 l~~~~~g~~~~~~~~g~~~~ 101 (108)
T cd02996 82 LKLFRNGMMMKREYRGQRSV 101 (108)
T ss_pred EEEEeCCcCcceecCCCCCH
Confidence 99999997 3678898763
No 28
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.70 E-value=1.4e-16 Score=120.91 Aligned_cols=95 Identities=22% Similarity=0.405 Sum_probs=80.1
Q ss_pred cEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEe
Q psy160 193 RIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~ 269 (346)
.|..++.++|++++++. ++|.||++||++|+.+.|.|+++++.+++.++.++.+ .++.++++|+|+++||+++|+
T Consensus 2 ~v~~l~~~~f~~~~~~~--~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02994 2 NVVELTDSNWTLVLEGE--WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAK 79 (101)
T ss_pred ceEEcChhhHHHHhCCC--EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeC
Confidence 46688999999987543 7899999999999999999999999876546888888 578899999999999999999
Q ss_pred CCeEEEeecCccccccchhhhhh
Q psy160 270 NGNPLIFEGENKILKGTYIGTYI 292 (346)
Q Consensus 270 ~g~~~~y~g~~~~~~~~~~~~~i 292 (346)
+|+...|.|.++.+. +..|+
T Consensus 80 ~g~~~~~~G~~~~~~---l~~~i 99 (101)
T cd02994 80 DGVFRRYQGPRDKED---LISFI 99 (101)
T ss_pred CCCEEEecCCCCHHH---HHHHH
Confidence 998778999876432 44444
No 29
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.69 E-value=1.8e-16 Score=121.93 Aligned_cols=96 Identities=19% Similarity=0.333 Sum_probs=80.8
Q ss_pred eeecCHHHHHHHHhcC-CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-----ChhhHHhhCCCCcceEEE
Q psy160 89 IEEVNRRMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-----DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 89 v~~l~~~~~~~~~~~~-~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-----~~~l~~~~~i~~~Ptl~~ 162 (346)
|.+++.++|++.+.++ ++++|.||++||++|+++.|.|+++++.+.+. +.++.++ +..+|++|+|+++||+++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~-~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL-VQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC-ceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence 6789999999988654 56999999999999999999999999998542 5555443 567999999999999999
Q ss_pred EecCC------cceecCCcchhHHHHHHHh
Q psy160 163 FRHRF------PSIYRGDLSEEEEVLQWLI 186 (346)
Q Consensus 163 ~~~g~------~~~y~g~~~~~~~i~~fi~ 186 (346)
|++|. ...|.|.++.+ +|.+|+.
T Consensus 81 ~~~~~~~~~~~~~~~~G~~~~~-~l~~fi~ 109 (109)
T cd03002 81 FRPPKKASKHAVEDYNGERSAK-AIVDFVL 109 (109)
T ss_pred EeCCCcccccccccccCccCHH-HHHHHhC
Confidence 99874 46799998855 8999973
No 30
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.69 E-value=2.4e-16 Score=135.21 Aligned_cols=102 Identities=17% Similarity=0.261 Sum_probs=87.2
Q ss_pred cCceeecCHHHHHHHHhc-----CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCc
Q psy160 86 KNEIEEVNRRMLDKLLEE-----NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKL 157 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~~-----~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~ 157 (346)
.+.+.++|+++|+++++. .++|+|+||+|||++|+++.|.|+++++.+++. +.++.+| ++.+|++|+|+++
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~-v~~~~VD~~~~~~l~~~~~I~~~ 107 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ-VNVADLDATRALNLAKRFAIKGY 107 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC-eEEEEecCcccHHHHHHcCCCcC
Confidence 357999999999998864 378999999999999999999999999998653 7777766 7789999999999
Q ss_pred ceEEEEecCCcceec-CCcchhHHHHHHHhhcc
Q psy160 158 PAVVYFRHRFPSIYR-GDLSEEEEVLQWLITQK 189 (346)
Q Consensus 158 Ptl~~~~~g~~~~y~-g~~~~~~~i~~fi~~~~ 189 (346)
||+++|++|+...|. |.++ .++|.+|+.+..
T Consensus 108 PTl~~f~~G~~v~~~~G~~s-~e~L~~fi~~~~ 139 (224)
T PTZ00443 108 PTLLLFDKGKMYQYEGGDRS-TEKLAAFALGDF 139 (224)
T ss_pred CEEEEEECCEEEEeeCCCCC-HHHHHHHHHHHH
Confidence 999999999877664 5566 448999988754
No 31
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.69 E-value=2.4e-16 Score=119.76 Aligned_cols=96 Identities=25% Similarity=0.570 Sum_probs=83.9
Q ss_pred EEEccHHHHHHHHhc-cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEe
Q psy160 194 IELITRVMLETMVEE-TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 194 v~~l~~~~~~~~~~~-~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~ 269 (346)
|..+|.++|++.+.+ +++++|.||++||++|+.+.|.|+++++.+.+ ++.++.+ .++.++++|+|+++|++++|+
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 79 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDENKELCKKYGVKSVPTIIFFK 79 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTSHHHHHHTTCSSSSEEEEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhccchhhhccCCCCCCEEEEEE
Confidence 457899999998776 89999999999999999999999999999987 8999999 678999999999999999999
Q ss_pred CCeEE-EeecCccccccchhhhhhh
Q psy160 270 NGNPL-IFEGENKILKGTYIGTYIS 293 (346)
Q Consensus 270 ~g~~~-~y~g~~~~~~~~~~~~~i~ 293 (346)
+|+.. .|.|.++.+. |..|++
T Consensus 80 ~g~~~~~~~g~~~~~~---l~~~i~ 101 (103)
T PF00085_consen 80 NGKEVKRYNGPRNAES---LIEFIE 101 (103)
T ss_dssp TTEEEEEEESSSSHHH---HHHHHH
T ss_pred CCcEEEEEECCCCHHH---HHHHHH
Confidence 99854 7899876333 666654
No 32
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.69 E-value=2.4e-16 Score=119.70 Aligned_cols=95 Identities=14% Similarity=0.264 Sum_probs=81.6
Q ss_pred eeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccC--CCcEEEEeC---ChhhHHhhCCCCcceEEEE
Q psy160 89 IEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDN--MDITFVKMA---DPRYARKWGVTKLPAVVYF 163 (346)
Q Consensus 89 v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~--~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~ 163 (346)
+.+++.++|++.+.++ .++|.||++||++|+.+.|.|.++++.+.+ .++.++.+| +..+|++|+|.++||+++|
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 80 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF 80 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE
Confidence 5688999999999765 599999999999999999999999999854 347777766 6689999999999999999
Q ss_pred ecCC-cceecCCcchhHHHHHHH
Q psy160 164 RHRF-PSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 164 ~~g~-~~~y~g~~~~~~~i~~fi 185 (346)
++|+ ...|.|.++.+ +|.+|+
T Consensus 81 ~~g~~~~~~~G~~~~~-~l~~~i 102 (102)
T cd03005 81 KDGEKVDKYKGTRDLD-SLKEFV 102 (102)
T ss_pred eCCCeeeEeeCCCCHH-HHHhhC
Confidence 9887 45699998854 788775
No 33
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.69 E-value=3.6e-16 Score=118.92 Aligned_cols=95 Identities=16% Similarity=0.238 Sum_probs=81.5
Q ss_pred eeecCHHHHHHHHhcC-CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEe
Q psy160 89 IEEVNRRMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 89 v~~l~~~~~~~~~~~~-~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 164 (346)
|.+++++++++.+.++ ++++|+||++||++|+++.|.|.++++.+.+ .+.++.+| +..++++|+|+++|++++|.
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~ 80 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVHQSLAQQYGVRGFPTIKVFG 80 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcchHHHHHHCCCCccCEEEEEC
Confidence 6789999999988665 4599999999999999999999999998754 36666655 77899999999999999999
Q ss_pred cCC--cceecCCcchhHHHHHHH
Q psy160 165 HRF--PSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 165 ~g~--~~~y~g~~~~~~~i~~fi 185 (346)
+|. ...|.|.++.+ +|.+|+
T Consensus 81 ~~~~~~~~~~g~~~~~-~l~~~~ 102 (103)
T cd03001 81 AGKNSPQDYQGGRTAK-AIVSAA 102 (103)
T ss_pred CCCcceeecCCCCCHH-HHHHHh
Confidence 883 67899998855 899986
No 34
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.68 E-value=1.7e-16 Score=122.77 Aligned_cols=98 Identities=14% Similarity=0.248 Sum_probs=81.5
Q ss_pred CcEEEccHHHHHHHHh-ccceEEEEEEcCCChh--hH--HHHHHHHHHHhhc--CcCceEEEEE---cChhhhhhCCCcc
Q psy160 192 DRIELITRVMLETMVE-ETQYLAVYFYKLNCNI--CD--QILEGLEKVDDEC--DIYGIHMVKI---QDPQLAKRYSIKT 261 (346)
Q Consensus 192 ~~v~~l~~~~~~~~~~-~~~~~lv~F~~~~c~~--c~--~~~~~~~~la~~~--~~~~i~~~~i---~~~~~~~~~~i~~ 261 (346)
..+..+|.++|++.+. ++.++++.|+++||++ |+ .+.|.+.++|.++ .+ ++.|+++ .+++++++|+|++
T Consensus 9 ~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~-~v~~~kVD~d~~~~La~~~~I~~ 87 (120)
T cd03065 9 DRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK-GIGFGLVDSKKDAKVAKKLGLDE 87 (120)
T ss_pred cceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC-CCEEEEEeCCCCHHHHHHcCCcc
Confidence 4677889999998655 5568888888888877 99 8899999998887 54 7999999 6899999999999
Q ss_pred ccEEEEEeCCeEEEeecCccccccchhhhhhh
Q psy160 262 FPALVYFRNGNPLIFEGENKILKGTYIGTYIS 293 (346)
Q Consensus 262 ~Pti~~~~~g~~~~y~g~~~~~~~~~~~~~i~ 293 (346)
+||+++|++|+.+.|.|.++.+. +..|+.
T Consensus 88 iPTl~lfk~G~~v~~~G~~~~~~---l~~~l~ 116 (120)
T cd03065 88 EDSIYVFKDDEVIEYDGEFAADT---LVEFLL 116 (120)
T ss_pred ccEEEEEECCEEEEeeCCCCHHH---HHHHHH
Confidence 99999999999888999986433 555554
No 35
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.68 E-value=2.6e-16 Score=121.38 Aligned_cols=97 Identities=10% Similarity=0.139 Sum_probs=79.9
Q ss_pred eecCHHHHHHHH-h--cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEE
Q psy160 90 EEVNRRMLDKLL-E--ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYF 163 (346)
Q Consensus 90 ~~l~~~~~~~~~-~--~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~ 163 (346)
..++.++|++.+ . .+++++|.||+|||++|+.+.|.|+++++.+.+.++.++.+| .+.++++++|+++||+++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~ 86 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGI 86 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence 346778887644 2 468999999999999999999999999999965457777776 6789999999999999999
Q ss_pred ecCCcc-eecCCcchhHHHHHHHhh
Q psy160 164 RHRFPS-IYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 164 ~~g~~~-~y~g~~~~~~~i~~fi~~ 187 (346)
++|+.. .+.|..+ .+.|.+|+.+
T Consensus 87 ~~g~~~~~~~G~~~-~~~l~~~i~~ 110 (111)
T cd02963 87 INGQVTFYHDSSFT-KQHVVDFVRK 110 (111)
T ss_pred ECCEEEEEecCCCC-HHHHHHHHhc
Confidence 999854 4578777 4489999875
No 36
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.68 E-value=2.6e-16 Score=120.01 Aligned_cols=88 Identities=16% Similarity=0.317 Sum_probs=76.9
Q ss_pred cEEEccHHHHHHHH-hccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEE
Q psy160 193 RIELITRVMLETMV-EETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYF 268 (346)
Q Consensus 193 ~v~~l~~~~~~~~~-~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~ 268 (346)
.+..++.++|++.+ +++++++|.||++||++|+.+.|.|+++++++.+ .+.++++ .++++|++++|+++||+++|
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 80 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG-KVKVGSVDCQKYESLCQQANIRAYPTIRLY 80 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCchHHHHHHcCCCcccEEEEE
Confidence 45688999999975 5567999999999999999999999999999875 6889988 57889999999999999999
Q ss_pred eCC-e-EEEeecCcc
Q psy160 269 RNG-N-PLIFEGENK 281 (346)
Q Consensus 269 ~~g-~-~~~y~g~~~ 281 (346)
++| + ...|.|..+
T Consensus 81 ~~g~~~~~~~~G~~~ 95 (104)
T cd03004 81 PGNASKYHSYNGWHR 95 (104)
T ss_pred cCCCCCceEccCCCC
Confidence 987 4 567888765
No 37
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.68 E-value=3.5e-16 Score=119.06 Aligned_cols=82 Identities=16% Similarity=0.241 Sum_probs=70.4
Q ss_pred HHHHHHHHh--ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCeE
Q psy160 199 RVMLETMVE--ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273 (346)
Q Consensus 199 ~~~~~~~~~--~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~ 273 (346)
.+++++.+. ++++++|.|||+||++|+.|.|.+++++.++.+ .+.|+++ ++++++++|+|++.||+++|++|+.
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~-~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~ 80 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN-FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKH 80 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC-ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEE
Confidence 467788765 577999999999999999999999999999986 5788888 7889999999999999999999986
Q ss_pred EE-eecCcc
Q psy160 274 LI-FEGENK 281 (346)
Q Consensus 274 ~~-y~g~~~ 281 (346)
+. ..|...
T Consensus 81 v~~~~G~~~ 89 (114)
T cd02954 81 MKIDLGTGN 89 (114)
T ss_pred EEEEcCCCC
Confidence 54 335443
No 38
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.66 E-value=6.4e-16 Score=117.67 Aligned_cols=97 Identities=18% Similarity=0.325 Sum_probs=82.8
Q ss_pred ceeecCHHHHHHHHhcC-CcEEEEEECCCChhHHHHHHHHHHHHhhccC-CCcEEEEeC--ChhhHHhhCCCCcceEEEE
Q psy160 88 EIEEVNRRMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLEKIDGETDN-MDITFVKMA--DPRYARKWGVTKLPAVVYF 163 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~-~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~-~~i~~~~~~--~~~l~~~~~i~~~Ptl~~~ 163 (346)
+|.+|+.++|++.+.+. ++++|+||++||++|+.+.|.|.++++.+.+ ..+.++.+| ..+++..+++.++||+++|
T Consensus 1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~~ 80 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILFF 80 (104)
T ss_pred CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEEE
Confidence 37789999999987654 7899999999999999999999999999865 457777766 5578899999999999999
Q ss_pred ecCC---cceecCCcchhHHHHHHH
Q psy160 164 RHRF---PSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 164 ~~g~---~~~y~g~~~~~~~i~~fi 185 (346)
++|. ...|.|..+.. +|.+|+
T Consensus 81 ~~~~~~~~~~~~g~~~~~-~l~~fi 104 (104)
T cd02995 81 PAGDKSNPIKYEGDRTLE-DLIKFI 104 (104)
T ss_pred cCCCcCCceEccCCcCHH-HHHhhC
Confidence 9876 56799998855 888885
No 39
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.66 E-value=5.5e-16 Score=117.06 Aligned_cols=80 Identities=15% Similarity=0.351 Sum_probs=69.0
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC----ChhhHHhhCCCCcceEEEEecCCcceecCCcchh
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEE 178 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~ 178 (346)
++++++|.|||+||++|+.+.|.|+++++.+.+ +.++.+| ++.++++|+|+++||+++|++|....|.|.++.+
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~--~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g~~~~~~G~~~~~ 94 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQ--IRHLAIEESSIKPSLLSRYGVVGFPTILLFNSTPRVRYNGTRTLD 94 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc--CceEEEECCCCCHHHHHhcCCeecCEEEEEcCCceeEecCCCCHH
Confidence 468899999999999999999999999998865 4455544 5789999999999999999999777899998854
Q ss_pred HHHHHHH
Q psy160 179 EEVLQWL 185 (346)
Q Consensus 179 ~~i~~fi 185 (346)
+|.+|+
T Consensus 95 -~l~~f~ 100 (100)
T cd02999 95 -SLAAFY 100 (100)
T ss_pred -HHHhhC
Confidence 898885
No 40
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.65 E-value=1e-15 Score=116.57 Aligned_cols=96 Identities=17% Similarity=0.333 Sum_probs=82.8
Q ss_pred eeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccC-CCcEEEEeC-----ChhhHHhhCCCCcceEEE
Q psy160 89 IEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDN-MDITFVKMA-----DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 89 v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~-~~i~~~~~~-----~~~l~~~~~i~~~Ptl~~ 162 (346)
+.++++.+|++.++++++++|.||++||++|+++.|.+.++++.+.. ..+.++.+| +..++++++|+++||+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~ 81 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKY 81 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEE
Confidence 67889999999999999999999999999999999999999998852 346666554 568999999999999999
Q ss_pred EecCC-cceecCCcchhHHHHHHH
Q psy160 163 FRHRF-PSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 163 ~~~g~-~~~y~g~~~~~~~i~~fi 185 (346)
|++|+ ...|.|..+.+ ++.+|+
T Consensus 82 ~~~g~~~~~~~g~~~~~-~l~~~l 104 (104)
T cd02997 82 FENGKFVEKYEGERTAE-DIIEFM 104 (104)
T ss_pred EeCCCeeEEeCCCCCHH-HHHhhC
Confidence 99988 66799988855 888875
No 41
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.65 E-value=1.5e-15 Score=115.29 Aligned_cols=94 Identities=14% Similarity=0.194 Sum_probs=77.5
Q ss_pred cCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEE--eCChhhHHhhCCCCcceEEEEecCCcc
Q psy160 92 VNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVK--MADPRYARKWGVTKLPAVVYFRHRFPS 169 (346)
Q Consensus 92 l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~--~~~~~l~~~~~i~~~Ptl~~~~~g~~~ 169 (346)
-|.++|+.++.++++++|.|||+||++|+.+.|.++++++.+.+..+.|+. +|..+++++|+|+++||+++|++|+..
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLKRYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHcCCCcCcEEEEEECCEEE
Confidence 478999999988899999999999999999999999999988643355555 457789999999999999999999854
Q ss_pred -eecCCcchhHHHHHHHhh
Q psy160 170 -IYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 170 -~y~g~~~~~~~i~~fi~~ 187 (346)
...|. + .+.+.+++.+
T Consensus 85 ~~~~G~-~-~~~~~~~i~~ 101 (102)
T cd02948 85 AVIRGA-N-APLLNKTITE 101 (102)
T ss_pred EEEecC-C-hHHHHHHHhh
Confidence 45564 4 3378887754
No 42
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.65 E-value=1.1e-15 Score=115.85 Aligned_cols=96 Identities=22% Similarity=0.379 Sum_probs=84.2
Q ss_pred cCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCC-CcEEEEeC---ChhhHHhhCCCCcceEEEEecCC
Q psy160 92 VNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNM-DITFVKMA---DPRYARKWGVTKLPAVVYFRHRF 167 (346)
Q Consensus 92 l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~-~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~ 167 (346)
|+.++|++.+.++++++|+||++||++|+.+.|.|+++++.+++. ++.++.+| ++.++++|+|+++|++++|.+|.
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence 578899999988899999999999999999999999999998653 37777765 77899999999999999999887
Q ss_pred -cceecCCcchhHHHHHHHhhc
Q psy160 168 -PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 168 -~~~y~g~~~~~~~i~~fi~~~ 188 (346)
+..|.|..+.+ +|..|+.++
T Consensus 81 ~~~~~~g~~~~~-~l~~~i~~~ 101 (102)
T TIGR01126 81 KPVDYEGGRDLE-AIVEFVNEK 101 (102)
T ss_pred cceeecCCCCHH-HHHHHHHhc
Confidence 78899998855 899998864
No 43
>KOG0910|consensus
Probab=99.65 E-value=9e-16 Score=120.28 Aligned_cols=99 Identities=15% Similarity=0.184 Sum_probs=83.9
Q ss_pred ceeecCHHHHHHHH-hcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEE
Q psy160 88 EIEEVNRRMLDKLL-EENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYF 163 (346)
Q Consensus 88 ~v~~l~~~~~~~~~-~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~ 163 (346)
.+..++.++|++.+ +++.+++|.|||+||++|+.+.|.+++++..+.+. +.++++| +.+++.+|+|..+||+++|
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~-~k~~kvdtD~~~ela~~Y~I~avPtvlvf 122 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK-FKLYKVDTDEHPELAEDYEISAVPTVLVF 122 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe-EEEEEEccccccchHhhcceeeeeEEEEE
Confidence 56677888998865 55689999999999999999999999999998553 7777776 7899999999999999999
Q ss_pred ecCCcc-eecCCcchhHHHHHHHhhc
Q psy160 164 RHRFPS-IYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 164 ~~g~~~-~y~g~~~~~~~i~~fi~~~ 188 (346)
++|+.. .+-|..+.+ .+.+++++.
T Consensus 123 knGe~~d~~vG~~~~~-~l~~~i~k~ 147 (150)
T KOG0910|consen 123 KNGEKVDRFVGAVPKE-QLRSLIKKF 147 (150)
T ss_pred ECCEEeeeecccCCHH-HHHHHHHHH
Confidence 999966 577877744 788888764
No 44
>PHA02278 thioredoxin-like protein
Probab=99.64 E-value=1.7e-15 Score=114.43 Aligned_cols=83 Identities=18% Similarity=0.383 Sum_probs=68.5
Q ss_pred cHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c-C----hhhhhhCCCccccEEEEEeC
Q psy160 198 TRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q-D----PQLAKRYSIKTFPALVYFRN 270 (346)
Q Consensus 198 ~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~-~----~~~~~~~~i~~~Pti~~~~~ 270 (346)
+.++|++.++++++++|.|||+||++|+.+.|.++++++++.. .+.++++ + + ++++++|+|.+.||+++|++
T Consensus 3 ~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~ 81 (103)
T PHA02278 3 SLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD 81 (103)
T ss_pred CHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence 4577888888889999999999999999999999999988543 4556655 3 2 68999999999999999999
Q ss_pred CeEEE-eecCcc
Q psy160 271 GNPLI-FEGENK 281 (346)
Q Consensus 271 g~~~~-y~g~~~ 281 (346)
|+.+. ..|..+
T Consensus 82 G~~v~~~~G~~~ 93 (103)
T PHA02278 82 GQLVKKYEDQVT 93 (103)
T ss_pred CEEEEEEeCCCC
Confidence 98664 556544
No 45
>PHA02278 thioredoxin-like protein
Probab=99.64 E-value=1.8e-15 Score=114.25 Aligned_cols=91 Identities=8% Similarity=0.137 Sum_probs=73.5
Q ss_pred CHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccC-CCcEEEEeCC-----hhhHHhhCCCCcceEEEEecC
Q psy160 93 NRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDN-MDITFVKMAD-----PRYARKWGVTKLPAVVYFRHR 166 (346)
Q Consensus 93 ~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~-~~i~~~~~~~-----~~l~~~~~i~~~Ptl~~~~~g 166 (346)
+.++|.+.+.++++++|.|||+||++|+.+.|.++++++.+.. ..+..+++|. +.++++|+|.+.||+++|++|
T Consensus 3 ~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G 82 (103)
T PHA02278 3 SLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDG 82 (103)
T ss_pred CHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECC
Confidence 4678888888889999999999999999999999999987532 2355556663 589999999999999999999
Q ss_pred Ccc-eecCCcchhHHHHHH
Q psy160 167 FPS-IYRGDLSEEEEVLQW 184 (346)
Q Consensus 167 ~~~-~y~g~~~~~~~i~~f 184 (346)
+.+ +..|..+.+ .+.++
T Consensus 83 ~~v~~~~G~~~~~-~l~~~ 100 (103)
T PHA02278 83 QLVKKYEDQVTPM-QLQEL 100 (103)
T ss_pred EEEEEEeCCCCHH-HHHhh
Confidence 844 577866633 56554
No 46
>PTZ00062 glutaredoxin; Provisional
Probab=99.63 E-value=1.1e-14 Score=122.81 Aligned_cols=169 Identities=14% Similarity=0.232 Sum_probs=114.9
Q ss_pred cCHHHHHHHHhcC-CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEecCCc-c
Q psy160 92 VNRRMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFP-S 169 (346)
Q Consensus 92 l~~~~~~~~~~~~-~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~g~~-~ 169 (346)
.+.++++++++++ ...+++|+|+||++|+.+.|.+.++++++.. +.|+.++.. |+|.++||+++|++|+. -
T Consensus 4 ~~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~--~~F~~V~~d-----~~V~~vPtfv~~~~g~~i~ 76 (204)
T PTZ00062 4 IKKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS--LEFYVVNLA-----DANNEYGVFEFYQNSQLIN 76 (204)
T ss_pred CCHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC--cEEEEEccc-----cCcccceEEEEEECCEEEe
Confidence 3578888888765 7789999999999999999999999998743 889998854 99999999999999984 4
Q ss_pred eecCCcchhHHHHHHHhhccccCcEEEccHHHHHHHHhccceEEEEE---EcCCChhhHHHHHHHHHHHhhcCcCceEEE
Q psy160 170 IYRGDLSEEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYF---YKLNCNICDQILEGLEKVDDECDIYGIHMV 246 (346)
Q Consensus 170 ~y~g~~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~~~~~~~~lv~F---~~~~c~~c~~~~~~~~~la~~~~~~~i~~~ 246 (346)
++.|... . .+..++.+...+.... ...+-+++++++++.++..= +.|+|++|+++...|.+..-. ....
T Consensus 77 r~~G~~~-~-~~~~~~~~~~~~~~~~-~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~-----y~~~ 148 (204)
T PTZ00062 77 SLEGCNT-S-TLVSFIRGWAQKGSSE-DTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVK-----YETY 148 (204)
T ss_pred eeeCCCH-H-HHHHHHHHHcCCCCHH-HHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCC-----EEEE
Confidence 5777654 3 6888888776543321 12233445555654433222 237999999988888876322 2233
Q ss_pred EE-cChhhh----hhCCCccccEEEEEeCCeEEEeecCc
Q psy160 247 KI-QDPQLA----KRYSIKTFPALVYFRNGNPLIFEGEN 280 (346)
Q Consensus 247 ~i-~~~~~~----~~~~i~~~Pti~~~~~g~~~~y~g~~ 280 (346)
.+ .+.++. +.-|-..+|.+ |-+|+.+ |+.
T Consensus 149 DI~~d~~~~~~l~~~sg~~TvPqV--fI~G~~I---GG~ 182 (204)
T PTZ00062 149 NIFEDPDLREELKVYSNWPTYPQL--YVNGELI---GGH 182 (204)
T ss_pred EcCCCHHHHHHHHHHhCCCCCCeE--EECCEEE---cCh
Confidence 34 333332 22344456655 4566543 554
No 47
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.63 E-value=4.3e-15 Score=112.77 Aligned_cols=84 Identities=18% Similarity=0.319 Sum_probs=72.5
Q ss_pred EccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--cChhhhhhCCCccccEEEEEeCCeE
Q psy160 196 LITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--QDPQLAKRYSIKTFPALVYFRNGNP 273 (346)
Q Consensus 196 ~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~~~~~~~~~~i~~~Pti~~~~~g~~ 273 (346)
.-+.++++++++++++++|.|||+||++|+.+.|.++++++.+.+..+.|+.+ ++++++++|+|+++||+++|++|+.
T Consensus 4 i~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 4 INNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLKRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred ccCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHcCCCcCcEEEEEECCEE
Confidence 35778999998889999999999999999999999999999987534777777 6778999999999999999999987
Q ss_pred EEeecC
Q psy160 274 LIFEGE 279 (346)
Q Consensus 274 ~~y~g~ 279 (346)
+....+
T Consensus 84 ~~~~~G 89 (102)
T cd02948 84 VAVIRG 89 (102)
T ss_pred EEEEec
Confidence 654333
No 48
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.63 E-value=2.1e-15 Score=114.95 Aligned_cols=93 Identities=14% Similarity=0.264 Sum_probs=77.7
Q ss_pred HHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccC--CCcEEEEeC---ChhhHHhhCCCCcceEEEEecCCc
Q psy160 94 RRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDN--MDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFP 168 (346)
Q Consensus 94 ~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~--~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~ 168 (346)
+++|++. .+++.++|.||++||++|+.+.|.|+++++.++. .++.++.+| .+.++++++|+++||+++|++|..
T Consensus 6 ~~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~ 84 (104)
T cd03000 6 DDSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLA 84 (104)
T ss_pred hhhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCc
Confidence 3778875 4567999999999999999999999999998843 346676655 678999999999999999988777
Q ss_pred ceecCCcchhHHHHHHHhhc
Q psy160 169 SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 169 ~~y~g~~~~~~~i~~fi~~~ 188 (346)
..|.|..+. ++|.+|+++.
T Consensus 85 ~~~~G~~~~-~~l~~~~~~~ 103 (104)
T cd03000 85 YNYRGPRTK-DDIVEFANRV 103 (104)
T ss_pred eeecCCCCH-HHHHHHHHhh
Confidence 779998874 4899998763
No 49
>PRK10996 thioredoxin 2; Provisional
Probab=99.62 E-value=5.3e-15 Score=118.62 Aligned_cols=99 Identities=18% Similarity=0.371 Sum_probs=85.4
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEe
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 164 (346)
.+.+++.++|++++.++++++|.||++||++|+.+.|.+.++++.+.. ++.++.+| .+.++++|+|.++||+++|+
T Consensus 36 ~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~ 114 (139)
T PRK10996 36 EVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAERELSARFRIRSIPTIMIFK 114 (139)
T ss_pred CCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCCHHHHHhcCCCccCEEEEEE
Confidence 566789999999998889999999999999999999999999988754 37777766 77899999999999999999
Q ss_pred cCCcc-eecCCcchhHHHHHHHhhc
Q psy160 165 HRFPS-IYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 165 ~g~~~-~y~g~~~~~~~i~~fi~~~ 188 (346)
+|+.. .+.|..+ .+.+.+|+.+.
T Consensus 115 ~G~~v~~~~G~~~-~e~l~~~l~~~ 138 (139)
T PRK10996 115 NGQVVDMLNGAVP-KAPFDSWLNEA 138 (139)
T ss_pred CCEEEEEEcCCCC-HHHHHHHHHHh
Confidence 99844 5788877 44899998764
No 50
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.62 E-value=2.2e-15 Score=115.91 Aligned_cols=88 Identities=22% Similarity=0.374 Sum_probs=75.5
Q ss_pred EEEccHHHHHHHHh-ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---c--ChhhhhhCCCccccEEEE
Q psy160 194 IELITRVMLETMVE-ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---Q--DPQLAKRYSIKTFPALVY 267 (346)
Q Consensus 194 v~~l~~~~~~~~~~-~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~--~~~~~~~~~i~~~Pti~~ 267 (346)
+..++.++|++.+. .+++++|.||++||++|+.+.|.+.++++.+.+ .+.++.+ . +.+++++|+|+++||+++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence 56789999999764 567799999999999999999999999999885 6777777 3 678999999999999999
Q ss_pred EeCCe------EEEeecCccc
Q psy160 268 FRNGN------PLIFEGENKI 282 (346)
Q Consensus 268 ~~~g~------~~~y~g~~~~ 282 (346)
|++|+ ...|.|.++.
T Consensus 81 ~~~~~~~~~~~~~~~~G~~~~ 101 (109)
T cd03002 81 FRPPKKASKHAVEDYNGERSA 101 (109)
T ss_pred EeCCCcccccccccccCccCH
Confidence 99885 4678888763
No 51
>PRK09381 trxA thioredoxin; Provisional
Probab=99.62 E-value=5.4e-15 Score=113.73 Aligned_cols=101 Identities=20% Similarity=0.321 Sum_probs=84.0
Q ss_pred cCceeecCHHHHHHH-HhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEE
Q psy160 86 KNEIEEVNRRMLDKL-LEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVV 161 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~-~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~ 161 (346)
++.|.+++.++|++. ++.+++++|.||+|||++|+.+.|.|+++++.+.+. +.++.+| .+.++++|+|+++||++
T Consensus 2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 80 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQNPGTAPKYGIRGIPTLL 80 (109)
T ss_pred CCcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC-cEEEEEECCCChhHHHhCCCCcCCEEE
Confidence 457889999999875 555789999999999999999999999999998543 6666654 67899999999999999
Q ss_pred EEecCCc-ceecCCcchhHHHHHHHhhc
Q psy160 162 YFRHRFP-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 162 ~~~~g~~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
+|++|+. ..+.|..+.+ .|.+++...
T Consensus 81 ~~~~G~~~~~~~G~~~~~-~l~~~i~~~ 107 (109)
T PRK09381 81 LFKNGEVAATKVGALSKG-QLKEFLDAN 107 (109)
T ss_pred EEeCCeEEEEecCCCCHH-HHHHHHHHh
Confidence 9999984 4678887744 788888764
No 52
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.8e-15 Score=131.19 Aligned_cols=100 Identities=21% Similarity=0.458 Sum_probs=86.0
Q ss_pred CcEEEccHHHHHHH-Hhc--cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEE
Q psy160 192 DRIELITRVMLETM-VEE--TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPAL 265 (346)
Q Consensus 192 ~~v~~l~~~~~~~~-~~~--~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti 265 (346)
..+.++|..||++. +.+ ..||+|+||+|||++|+.+.|.+++++..++| .+.++++ .++.++..|||+++||+
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G-~f~LakvN~D~~p~vAaqfgiqsIPtV 101 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNCDAEPMVAAQFGVQSIPTV 101 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC-ceEEEEecCCcchhHHHHhCcCcCCeE
Confidence 35789999999884 443 45999999999999999999999999999998 8999999 78999999999999999
Q ss_pred EEEeCCeEEE-eecCccccccchhhhhhhcc
Q psy160 266 VYFRNGNPLI-FEGENKILKGTYIGTYISTK 295 (346)
Q Consensus 266 ~~~~~g~~~~-y~g~~~~~~~~~~~~~i~~~ 295 (346)
++|++|+++. |.|....+. +..|+.+.
T Consensus 102 ~af~dGqpVdgF~G~qPesq---lr~~ld~~ 129 (304)
T COG3118 102 YAFKDGQPVDGFQGAQPESQ---LRQFLDKV 129 (304)
T ss_pred EEeeCCcCccccCCCCcHHH---HHHHHHHh
Confidence 9999999886 888775322 66676654
No 53
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.61 E-value=1.6e-15 Score=114.47 Aligned_cols=74 Identities=14% Similarity=0.344 Sum_probs=63.1
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC----ChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKIS----DTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTW 76 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~~ 76 (346)
|.|||+||++|+++.|.|+++++.+.. +.++.+| +++++.+|+|+++||+++|++|....|.|..+. +++.+|
T Consensus 23 V~F~a~WC~~C~~~~p~l~~la~~~~~--~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g~~~~~~G~~~~-~~l~~f 99 (100)
T cd02999 23 VLFYASWCPFSASFRPHFNALSSMFPQ--IRHLAIEESSIKPSLLSRYGVVGFPTILLFNSTPRVRYNGTRTL-DSLAAF 99 (100)
T ss_pred EEEECCCCHHHHhHhHHHHHHHHHhcc--CceEEEECCCCCHHHHHhcCCeecCEEEEEcCCceeEecCCCCH-HHHHhh
Confidence 689999999999999999999998853 5555543 478999999999999999999976789998766 588888
Q ss_pred H
Q psy160 77 L 77 (346)
Q Consensus 77 i 77 (346)
+
T Consensus 100 ~ 100 (100)
T cd02999 100 Y 100 (100)
T ss_pred C
Confidence 5
No 54
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.61 E-value=4.9e-15 Score=112.91 Aligned_cols=96 Identities=22% Similarity=0.413 Sum_probs=81.6
Q ss_pred eeecCHHHHHHHHhcCC-cEEEEEECCCChhHHHHHHHHHHHHhhcc-CCCcEEEEeC----ChhhHHhhCCCCcceEEE
Q psy160 89 IEEVNRRMLDKLLEENE-FVTVFFYETDHKDSVKVLERLEKIDGETD-NMDITFVKMA----DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 89 v~~l~~~~~~~~~~~~~-~~lv~F~~~~C~~c~~~~~~~~~~a~~~~-~~~i~~~~~~----~~~l~~~~~i~~~Ptl~~ 162 (346)
+.+++++++++.+.+.+ ++++.||++||++|+++.|.|..+++.+. ..++.++.+| +.++|++++|.++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 56789999999887654 89999999999999999999999999985 3357887776 468999999999999999
Q ss_pred EecCC--cceecCCcchhHHHHHHH
Q psy160 163 FRHRF--PSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 163 ~~~g~--~~~y~g~~~~~~~i~~fi 185 (346)
|.+|. ...|.|.++.+ +|.+|+
T Consensus 82 ~~~~~~~~~~~~g~~~~~-~l~~~i 105 (105)
T cd02998 82 FPKGSTEPVKYEGGRDLE-DLVKFV 105 (105)
T ss_pred EeCCCCCccccCCccCHH-HHHhhC
Confidence 99773 66799998854 888875
No 55
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.60 E-value=6.7e-15 Score=138.41 Aligned_cols=102 Identities=14% Similarity=0.264 Sum_probs=84.2
Q ss_pred ccCceeecCHHHHHHHHh---cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe--C-C-hhhH-HhhCCCC
Q psy160 85 IKNEIEEVNRRMLDKLLE---ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM--A-D-PRYA-RKWGVTK 156 (346)
Q Consensus 85 ~~~~v~~l~~~~~~~~~~---~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~-~-~~l~-~~~~i~~ 156 (346)
.+..|.+||.+||+++++ .+++++|.||+|||++|+.+.|.|+++++.+.+.++.++.+ | + ..++ ++|+|++
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~ 428 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS 428 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCc
Confidence 345899999999999986 56899999999999999999999999999986545666655 4 2 2454 6899999
Q ss_pred cceEEEEecCC--cceecC-CcchhHHHHHHHhh
Q psy160 157 LPAVVYFRHRF--PSIYRG-DLSEEEEVLQWLIT 187 (346)
Q Consensus 157 ~Ptl~~~~~g~--~~~y~g-~~~~~~~i~~fi~~ 187 (346)
+||+++|++|. +..|.| .++ .++|+.|++.
T Consensus 429 ~PTii~Fk~g~~~~~~Y~~g~R~-~e~L~~Fv~~ 461 (463)
T TIGR00424 429 FPTILFFPKHSSRPIKYPSEKRD-VDSLMSFVNL 461 (463)
T ss_pred cceEEEEECCCCCceeCCCCCCC-HHHHHHHHHh
Confidence 99999999875 678985 677 4499999874
No 56
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.60 E-value=6.4e-15 Score=110.56 Aligned_cols=89 Identities=27% Similarity=0.432 Sum_probs=73.9
Q ss_pred HHHHHHh-c-CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCCc-c
Q psy160 96 MLDKLLE-E-NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFP-S 169 (346)
Q Consensus 96 ~~~~~~~-~-~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~-~ 169 (346)
+|++.+. + +++++|.||++||++|+.+.|.++++++.+.+ .+.++.+| .+.++++|+|.++||+++|++|+. .
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~ 80 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVD 80 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEee
Confidence 5666664 4 46999999999999999999999999998854 36677766 789999999999999999998874 4
Q ss_pred eecCCcchhHHHHHHHh
Q psy160 170 IYRGDLSEEEEVLQWLI 186 (346)
Q Consensus 170 ~y~g~~~~~~~i~~fi~ 186 (346)
.|.|..+.+ +|.+|++
T Consensus 81 ~~~g~~~~~-~l~~~l~ 96 (96)
T cd02956 81 GFQGAQPEE-QLRQMLD 96 (96)
T ss_pred eecCCCCHH-HHHHHhC
Confidence 588988744 8888863
No 57
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=5.3e-15 Score=128.24 Aligned_cols=102 Identities=22% Similarity=0.325 Sum_probs=89.2
Q ss_pred ceeecCHHHHHHHHhc-C--CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEE
Q psy160 88 EIEEVNRRMLDKLLEE-N--EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVV 161 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~-~--~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~ 161 (346)
.|.++|+.||+..+.. + .+++|+||+|||++|+.+.|.+++++..+++. +.++++| ++.++.+|||++.||++
T Consensus 24 ~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~D~~p~vAaqfgiqsIPtV~ 102 (304)
T COG3118 24 GIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNCDAEPMVAAQFGVQSIPTVY 102 (304)
T ss_pred cceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc-eEEEEecCCcchhHHHHhCcCcCCeEE
Confidence 5999999999986633 2 58999999999999999999999999998764 7777765 88999999999999999
Q ss_pred EEecCCcce-ecCCcchhHHHHHHHhhcccc
Q psy160 162 YFRHRFPSI-YRGDLSEEEEVLQWLITQKTE 191 (346)
Q Consensus 162 ~~~~g~~~~-y~g~~~~~~~i~~fi~~~~~~ 191 (346)
.|.+|+|+. |.|... ++.+.+|+.+...+
T Consensus 103 af~dGqpVdgF~G~qP-esqlr~~ld~~~~~ 132 (304)
T COG3118 103 AFKDGQPVDGFQGAQP-ESQLRQFLDKVLPA 132 (304)
T ss_pred EeeCCcCccccCCCCc-HHHHHHHHHHhcCh
Confidence 999999876 999888 55899999987643
No 58
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.60 E-value=3.8e-15 Score=113.79 Aligned_cols=93 Identities=15% Similarity=0.373 Sum_probs=76.3
Q ss_pred EEEccHHHHHHHHhccceEEEEEEc--CCCh---hhHHHHHHHHHHHhhcCcCceEEEEE--------cChhhhhhCCCc
Q psy160 194 IELITRVMLETMVEETQYLAVYFYK--LNCN---ICDQILEGLEKVDDECDIYGIHMVKI--------QDPQLAKRYSIK 260 (346)
Q Consensus 194 v~~l~~~~~~~~~~~~~~~lv~F~~--~~c~---~c~~~~~~~~~la~~~~~~~i~~~~i--------~~~~~~~~~~i~ 260 (346)
+..|+.++|++++++++.+||.||| |||+ +|+.+.|.+.+.+.. +.+++| .+.++|++|+|+
T Consensus 3 ~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~-----v~lakVd~~d~~~~~~~~L~~~y~I~ 77 (116)
T cd03007 3 CVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD-----LLVAEVGIKDYGEKLNMELGERYKLD 77 (116)
T ss_pred eeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc-----eEEEEEecccccchhhHHHHHHhCCC
Confidence 5689999999999999999999999 9999 888888888777643 667777 247899999999
Q ss_pred --cccEEEEEeCCe---EEEeecC-ccccccchhhhhhhc
Q psy160 261 --TFPALVYFRNGN---PLIFEGE-NKILKGTYIGTYIST 294 (346)
Q Consensus 261 --~~Pti~~~~~g~---~~~y~g~-~~~~~~~~~~~~i~~ 294 (346)
+||||.+|++|. +..|.|+ |+.+. |..|++.
T Consensus 78 ~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~---lv~~v~~ 114 (116)
T cd03007 78 KESYPVIYLFHGGDFENPVPYSGADVTVDA---LQRFLKG 114 (116)
T ss_pred cCCCCEEEEEeCCCcCCCccCCCCcccHHH---HHHHHHh
Confidence 999999999884 6789996 86433 5555554
No 59
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.60 E-value=7e-15 Score=111.55 Aligned_cols=88 Identities=17% Similarity=0.436 Sum_probs=75.7
Q ss_pred EEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc--CceEEEEE---cChhhhhhCCCccccEEEEE
Q psy160 194 IELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDI--YGIHMVKI---QDPQLAKRYSIKTFPALVYF 268 (346)
Q Consensus 194 v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~--~~i~~~~i---~~~~~~~~~~i~~~Pti~~~ 268 (346)
+..++.++|++.++++ +++|.||++||++|+.+.|.+.++++.+++ ..+.++.+ .+..++++|+|.++||+++|
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 80 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF 80 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE
Confidence 4578999999988765 599999999999999999999999999864 25888888 56789999999999999999
Q ss_pred eCCeE-EEeecCccc
Q psy160 269 RNGNP-LIFEGENKI 282 (346)
Q Consensus 269 ~~g~~-~~y~g~~~~ 282 (346)
++|+. ..|.|.++.
T Consensus 81 ~~g~~~~~~~G~~~~ 95 (102)
T cd03005 81 KDGEKVDKYKGTRDL 95 (102)
T ss_pred eCCCeeeEeeCCCCH
Confidence 99974 468898763
No 60
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.60 E-value=6.6e-15 Score=111.93 Aligned_cols=88 Identities=19% Similarity=0.368 Sum_probs=76.5
Q ss_pred EEEccHHHHHHHHh-ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEe
Q psy160 194 IELITRVMLETMVE-ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 194 v~~l~~~~~~~~~~-~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~ 269 (346)
+..++.+++++.+. .+++++|.||++||++|+.+.|.|.++++.+.+ .+.++.+ .+++++++|+|+++|++++|+
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~ 80 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVHQSLAQQYGVRGFPTIKVFG 80 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcchHHHHHHCCCCccCEEEEEC
Confidence 46788999999765 455699999999999999999999999999876 6888888 577899999999999999999
Q ss_pred CC--eEEEeecCccc
Q psy160 270 NG--NPLIFEGENKI 282 (346)
Q Consensus 270 ~g--~~~~y~g~~~~ 282 (346)
+| ....|.|+++.
T Consensus 81 ~~~~~~~~~~g~~~~ 95 (103)
T cd03001 81 AGKNSPQDYQGGRTA 95 (103)
T ss_pred CCCcceeecCCCCCH
Confidence 88 46789998763
No 61
>PLN02309 5'-adenylylsulfate reductase
Probab=99.60 E-value=6.9e-15 Score=138.28 Aligned_cols=103 Identities=14% Similarity=0.252 Sum_probs=86.8
Q ss_pred ccCceeecCHHHHHHHHh---cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC----ChhhHH-hhCCCC
Q psy160 85 IKNEIEEVNRRMLDKLLE---ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYAR-KWGVTK 156 (346)
Q Consensus 85 ~~~~v~~l~~~~~~~~~~---~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----~~~l~~-~~~i~~ 156 (346)
.+..|.+++.++|++++. .+++++|.||+|||++|+.+.|.|+++++.+.+.++.|+.+| +..+|. +|+|++
T Consensus 343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~ 422 (457)
T PLN02309 343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS 422 (457)
T ss_pred CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCce
Confidence 345889999999999874 568999999999999999999999999999866568888775 457886 699999
Q ss_pred cceEEEEecCC--cceecC-CcchhHHHHHHHhhc
Q psy160 157 LPAVVYFRHRF--PSIYRG-DLSEEEEVLQWLITQ 188 (346)
Q Consensus 157 ~Ptl~~~~~g~--~~~y~g-~~~~~~~i~~fi~~~ 188 (346)
+||+++|++|. +..|.| .++ .++|+.|++..
T Consensus 423 ~PTil~f~~g~~~~v~Y~~~~R~-~~~L~~fv~~~ 456 (457)
T PLN02309 423 FPTILLFPKNSSRPIKYPSEKRD-VDSLLSFVNSL 456 (457)
T ss_pred eeEEEEEeCCCCCeeecCCCCcC-HHHHHHHHHHh
Confidence 99999999875 678986 566 45999999763
No 62
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.59 E-value=1e-14 Score=109.97 Aligned_cols=94 Identities=20% Similarity=0.363 Sum_probs=81.8
Q ss_pred ecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhcc-CCCcEEEEeC---ChhhHHhhCCCCcceEEEEecC
Q psy160 91 EVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETD-NMDITFVKMA---DPRYARKWGVTKLPAVVYFRHR 166 (346)
Q Consensus 91 ~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~-~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g 166 (346)
+++.++|.+.+.++++++|+||++||++|+.+.|.|.++++.++ ..++.++.++ +..++++|+|+++||+++|.++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence 57889999999998899999999999999999999999999884 3458888776 5789999999999999999987
Q ss_pred --CcceecCCcchhHHHHHHH
Q psy160 167 --FPSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 167 --~~~~y~g~~~~~~~i~~fi 185 (346)
....|.|..+ .+++.+|+
T Consensus 82 ~~~~~~~~g~~~-~~~i~~~~ 101 (101)
T cd02961 82 SKEPVKYEGPRT-LESLVEFI 101 (101)
T ss_pred CcccccCCCCcC-HHHHHhhC
Confidence 4777999886 44788774
No 63
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.59 E-value=8.3e-15 Score=112.95 Aligned_cols=95 Identities=17% Similarity=0.257 Sum_probs=75.9
Q ss_pred EccHHHHHH-HHh--ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEe
Q psy160 196 LITRVMLET-MVE--ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 196 ~l~~~~~~~-~~~--~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~ 269 (346)
.++.++|++ ++. .+++++|.||++||++|+.+.|.++++++++.+.++.++++ .++.++++++|+++||+++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~ 87 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGII 87 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEE
Confidence 456677875 443 57899999999999999999999999999997645888888 567899999999999999999
Q ss_pred CCeEEEe-ecCccccccchhhhhhh
Q psy160 270 NGNPLIF-EGENKILKGTYIGTYIS 293 (346)
Q Consensus 270 ~g~~~~y-~g~~~~~~~~~~~~~i~ 293 (346)
+|+...+ .|..+.+. +..+++
T Consensus 88 ~g~~~~~~~G~~~~~~---l~~~i~ 109 (111)
T cd02963 88 NGQVTFYHDSSFTKQH---VVDFVR 109 (111)
T ss_pred CCEEEEEecCCCCHHH---HHHHHh
Confidence 9986554 67664322 555554
No 64
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.59 E-value=1.4e-14 Score=116.97 Aligned_cols=91 Identities=20% Similarity=0.251 Sum_probs=77.7
Q ss_pred ccccCceeecCHHHHHHHHhcC--CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCC-
Q psy160 83 FEIKNEIEEVNRRMLDKLLEEN--EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTK- 156 (346)
Q Consensus 83 p~~~~~v~~l~~~~~~~~~~~~--~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~- 156 (346)
+..+..+.++++++|++.+..+ ++++|.||+|||++|+.+.|.|+++++.+.+.++.|+.+| +++++++|+|.+
T Consensus 24 ~~~~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~ 103 (152)
T cd02962 24 YMGPEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTS 103 (152)
T ss_pred cCCCCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceec
Confidence 4556789999999999988543 5899999999999999999999999999865558888776 788999999988
Q ss_pred -----cceEEEEecCCcc-eecC
Q psy160 157 -----LPAVVYFRHRFPS-IYRG 173 (346)
Q Consensus 157 -----~Ptl~~~~~g~~~-~y~g 173 (346)
+||+++|++|+.+ ++.|
T Consensus 104 ~~v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 104 PLSKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred CCcCCCCEEEEEECCEEEEEEec
Confidence 9999999999844 4555
No 65
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.59 E-value=1e-14 Score=112.17 Aligned_cols=89 Identities=19% Similarity=0.471 Sum_probs=74.6
Q ss_pred cEEEccHHHHHHHHh---ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---c-Chhhhh-hCCCccccE
Q psy160 193 RIELITRVMLETMVE---ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---Q-DPQLAK-RYSIKTFPA 264 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~---~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~-~~~~~~-~~~i~~~Pt 264 (346)
.|..++.++|+.+.. ++++++|.||++||++|+.+.|.|.++++.+++.++.++.+ . +..++. .++|+++||
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 466889999998763 46899999999999999999999999999998645888888 2 456776 499999999
Q ss_pred EEEEeCC--eEEEeecC-cc
Q psy160 265 LVYFRNG--NPLIFEGE-NK 281 (346)
Q Consensus 265 i~~~~~g--~~~~y~g~-~~ 281 (346)
+++|++| ....|.|. ++
T Consensus 82 i~~f~~~~~~~~~y~g~~~~ 101 (109)
T cd02993 82 ILFFPKNSRQPIKYPSEQRD 101 (109)
T ss_pred EEEEcCCCCCceeccCCCCC
Confidence 9999876 36789985 54
No 66
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.59 E-value=1e-14 Score=125.22 Aligned_cols=90 Identities=23% Similarity=0.482 Sum_probs=78.6
Q ss_pred cCcEEEccHHHHHHHHhc-----cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccc
Q psy160 191 EDRIELITRVMLETMVEE-----TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTF 262 (346)
Q Consensus 191 ~~~v~~l~~~~~~~~~~~-----~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~ 262 (346)
++.+..++.++|+++++. +++++|.||++||++|+.+.|.|+++++++++ .+.++.+ .+++++++|+|+++
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~~~~l~~~~~I~~~ 107 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG-QVNVADLDATRALNLAKRFAIKGY 107 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCcccHHHHHHcCCCcC
Confidence 346789999999997653 47999999999999999999999999999986 6888887 67889999999999
Q ss_pred cEEEEEeCCeEEEeec-Ccc
Q psy160 263 PALVYFRNGNPLIFEG-ENK 281 (346)
Q Consensus 263 Pti~~~~~g~~~~y~g-~~~ 281 (346)
||+++|++|+.+.|.+ .++
T Consensus 108 PTl~~f~~G~~v~~~~G~~s 127 (224)
T PTZ00443 108 PTLLLFDKGKMYQYEGGDRS 127 (224)
T ss_pred CEEEEEECCEEEEeeCCCCC
Confidence 9999999999887764 454
No 67
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.59 E-value=1.1e-14 Score=110.97 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=67.1
Q ss_pred HHHHHHHHh--cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCCc
Q psy160 94 RRMLDKLLE--ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFP 168 (346)
Q Consensus 94 ~~~~~~~~~--~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~ 168 (346)
.+++++.+. ++++++|.|||+||++|+.+.|.+++++.++.+. +.|+++| .++++++|+|.+.||+++|++|+.
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~ 80 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKH 80 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEE
Confidence 467888886 4578999999999999999999999999998653 5666665 889999999999999999999984
Q ss_pred ce-ecCCc
Q psy160 169 SI-YRGDL 175 (346)
Q Consensus 169 ~~-y~g~~ 175 (346)
.. ..|..
T Consensus 81 v~~~~G~~ 88 (114)
T cd02954 81 MKIDLGTG 88 (114)
T ss_pred EEEEcCCC
Confidence 43 44543
No 68
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.59 E-value=1.5e-14 Score=109.91 Aligned_cols=90 Identities=17% Similarity=0.289 Sum_probs=73.1
Q ss_pred CHHHHHHHHhc--CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---C---hhhHHhhCCCCcceEEEEe
Q psy160 93 NRRMLDKLLEE--NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---D---PRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 93 ~~~~~~~~~~~--~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~---~~l~~~~~i~~~Ptl~~~~ 164 (346)
+.++|++.+.+ +++++|.||++||++|+.+.|.+.++++.+. ++.|+.+| + ..++++|+|+++||+++|+
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~ 79 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN--DVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK 79 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--CCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence 46788888865 6899999999999999999999999999983 36777665 2 3799999999999999999
Q ss_pred cCC-cceecCCcchhHHHHHHHh
Q psy160 165 HRF-PSIYRGDLSEEEEVLQWLI 186 (346)
Q Consensus 165 ~g~-~~~y~g~~~~~~~i~~fi~ 186 (346)
+|+ ...+.|... . ++.+-+.
T Consensus 80 ~G~~v~~~~G~~~-~-~l~~~~~ 100 (103)
T cd02985 80 DGEKIHEEEGIGP-D-ELIGDVL 100 (103)
T ss_pred CCeEEEEEeCCCH-H-HHHHHHH
Confidence 998 456888654 3 5665543
No 69
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.58 E-value=1.5e-14 Score=109.31 Aligned_cols=90 Identities=16% Similarity=0.209 Sum_probs=77.0
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEECCC--ChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYETD--HKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~--C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
...+++.+||++.+..+...+|.||++| |++|..+.|.+.++++++.+. +.|+++| ++.++.+|+|++.||+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~~~~la~~f~V~sIPTli~ 89 (111)
T cd02965 11 GWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRADEQALAARFGVLRTPALLF 89 (111)
T ss_pred CCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCCCHHHHHHcCCCcCCEEEE
Confidence 3567899999999988899999999997 999999999999999998653 5666554 789999999999999999
Q ss_pred EecCCcc-eecCCcchh
Q psy160 163 FRHRFPS-IYRGDLSEE 178 (346)
Q Consensus 163 ~~~g~~~-~y~g~~~~~ 178 (346)
|++|+.. ...|..+..
T Consensus 90 fkdGk~v~~~~G~~~~~ 106 (111)
T cd02965 90 FRDGRYVGVLAGIRDWD 106 (111)
T ss_pred EECCEEEEEEeCccCHH
Confidence 9999844 567876643
No 70
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.57 E-value=1.9e-14 Score=107.96 Aligned_cols=80 Identities=21% Similarity=0.467 Sum_probs=68.8
Q ss_pred HHHHHH-hc-cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCeEE-
Q psy160 201 MLETMV-EE-TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPL- 274 (346)
Q Consensus 201 ~~~~~~-~~-~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~~- 274 (346)
+|++.+ ++ +++++|.||++||++|+.+.|.++++++.+.+ .+.++.+ .+..++++|+|.++|++++|++|+.+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~ 80 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVD 80 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEee
Confidence 466654 44 57999999999999999999999999999986 6888888 67899999999999999999999764
Q ss_pred EeecCcc
Q psy160 275 IFEGENK 281 (346)
Q Consensus 275 ~y~g~~~ 281 (346)
.+.|..+
T Consensus 81 ~~~g~~~ 87 (96)
T cd02956 81 GFQGAQP 87 (96)
T ss_pred eecCCCC
Confidence 5778765
No 71
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.57 E-value=3.6e-14 Score=114.59 Aligned_cols=87 Identities=18% Similarity=0.320 Sum_probs=75.3
Q ss_pred CcEEEccHHHHHHHHhc--cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCcc-----
Q psy160 192 DRIELITRVMLETMVEE--TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKT----- 261 (346)
Q Consensus 192 ~~v~~l~~~~~~~~~~~--~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~----- 261 (346)
..+..++.++|++.+.. +++++|.||++||++|+.+.|.++++++++.+.++.|+++ .+++++++|+|++
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~ 107 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSK 107 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcC
Confidence 46778999999997643 4689999999999999999999999999987546999999 6789999999988
Q ss_pred -ccEEEEEeCCeEEE-eec
Q psy160 262 -FPALVYFRNGNPLI-FEG 278 (346)
Q Consensus 262 -~Pti~~~~~g~~~~-y~g 278 (346)
+||+++|++|+.+. +.|
T Consensus 108 ~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 108 QLPTIILFQGGKEVARRPY 126 (152)
T ss_pred CCCEEEEEECCEEEEEEec
Confidence 99999999998653 444
No 72
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.57 E-value=3.2e-14 Score=110.11 Aligned_cols=88 Identities=15% Similarity=0.160 Sum_probs=73.4
Q ss_pred ceeecCHHHHHHHHhcC-CcEEEEEECCCChhHHHHHHHHHHHHhhccCC--CcEEEEeC-----ChhhHHhhCCCCcce
Q psy160 88 EIEEVNRRMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLEKIDGETDNM--DITFVKMA-----DPRYARKWGVTKLPA 159 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~-~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~--~i~~~~~~-----~~~l~~~~~i~~~Pt 159 (346)
.+.+++.++|++.+.++ ++++|.||++||++|+.+.|.|+++++.++.. .+.++.+| ...+|++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 68899999999998765 58999999999999999999999999988432 37777665 457999999999999
Q ss_pred EEEEecCCc-----ceecCCc
Q psy160 160 VVYFRHRFP-----SIYRGDL 175 (346)
Q Consensus 160 l~~~~~g~~-----~~y~g~~ 175 (346)
+++|++|.. ..|+|..
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~ 102 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPE 102 (114)
T ss_pred EEEECCCCccCCCCCcccCCc
Confidence 999998763 3466663
No 73
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.57 E-value=2.2e-14 Score=109.19 Aligned_cols=88 Identities=23% Similarity=0.436 Sum_probs=76.3
Q ss_pred EEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc-CceEEEEE---c--ChhhhhhCCCccccEEEE
Q psy160 194 IELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDI-YGIHMVKI---Q--DPQLAKRYSIKTFPALVY 267 (346)
Q Consensus 194 v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~-~~i~~~~i---~--~~~~~~~~~i~~~Pti~~ 267 (346)
+..++..+++++++++++++|.||++||++|+.+.|.+.++++.+.+ ..+.++.+ . +..++++++|+++||+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~ 81 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKY 81 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEE
Confidence 56788899999888888999999999999999999999999998863 25778777 3 788999999999999999
Q ss_pred EeCCe-EEEeecCcc
Q psy160 268 FRNGN-PLIFEGENK 281 (346)
Q Consensus 268 ~~~g~-~~~y~g~~~ 281 (346)
|++|+ ...|.|..+
T Consensus 82 ~~~g~~~~~~~g~~~ 96 (104)
T cd02997 82 FENGKFVEKYEGERT 96 (104)
T ss_pred EeCCCeeEEeCCCCC
Confidence 99997 456788765
No 74
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.57 E-value=5.3e-13 Score=112.43 Aligned_cols=167 Identities=23% Similarity=0.430 Sum_probs=136.4
Q ss_pred HHHHHHHHHHhhhcccCCeEEEcCChHHHHhcCCCCCCeEEEEeC--CceeeecCCCCCHHHHHHHHhccCCccccCcee
Q psy160 13 DILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRK--QVPLLYDGDLFDEEKILTWLTSQDVFEIKNEIE 90 (346)
Q Consensus 13 ~~~~~~~~~a~~~~~~~i~~~~~~~~~~c~~~~i~~~Ptl~~f~~--~~~~~y~G~~~~~~~i~~~i~~~~~p~~~~~v~ 90 (346)
.....|.++|+.+.. .+.|+.+.+.++|+++++.. |++++|++ +.+..|.|.....++|.+||..+..| .+.
T Consensus 7 ~~~~~f~~~A~~~~~-~~~F~~~~~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P----~v~ 80 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKG-DYQFGVTFNEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFP----LVP 80 (184)
T ss_dssp HHHHHHHHHHHHHTT-TSEEEEEE-HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSST----SCE
T ss_pred HHHHHHHHHHHhCcC-CcEEEEEcHHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhccc----ccc
Confidence 456678999998853 28999999999999999999 99999998 45789999833446999999999999 999
Q ss_pred ecCHHHHHHHHhcCCc-EEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCC--CcceEEEEe
Q psy160 91 EVNRRMLDKLLEENEF-VTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVT--KLPAVVYFR 164 (346)
Q Consensus 91 ~l~~~~~~~~~~~~~~-~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~--~~Ptl~~~~ 164 (346)
++|.+++..+...+.+ ++++|+.........+...++.+|+.+++. +.|+.+| .+++++.+|++ .+|+++++.
T Consensus 81 ~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~-~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~ 159 (184)
T PF13848_consen 81 ELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK-INFVYVDADDFPRLLKYFGIDEDDLPALVIFD 159 (184)
T ss_dssp EESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT-SEEEEEETTTTHHHHHHTTTTTSSSSEEEEEE
T ss_pred ccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe-EEEEEeehHHhHHHHHHcCCCCccCCEEEEEE
Confidence 9999999999988765 788888777788889999999999998653 6666655 67899999998 899999998
Q ss_pred c-CCcce--ecCCcchhHHHHHHHhh
Q psy160 165 H-RFPSI--YRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 165 ~-g~~~~--y~g~~~~~~~i~~fi~~ 187 (346)
. +..+. +.|..+. ++|.+|+++
T Consensus 160 ~~~~~~~~~~~~~~~~-~~i~~Fl~d 184 (184)
T PF13848_consen 160 SNKGKYYYLPEGEITP-ESIEKFLND 184 (184)
T ss_dssp TTTSEEEE--SSCGCH-HHHHHHHHH
T ss_pred CCCCcEEcCCCCCCCH-HHHHHHhcC
Confidence 3 22222 4777774 499999864
No 75
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.56 E-value=2.1e-14 Score=109.22 Aligned_cols=88 Identities=17% Similarity=0.473 Sum_probs=75.3
Q ss_pred EEEccHHHHHHHHh-ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc-CceEEEEE--cChhhhhhCCCccccEEEEEe
Q psy160 194 IELITRVMLETMVE-ETQYLAVYFYKLNCNICDQILEGLEKVDDECDI-YGIHMVKI--QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 194 v~~l~~~~~~~~~~-~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~-~~i~~~~i--~~~~~~~~~~i~~~Pti~~~~ 269 (346)
|..++.++|++.+. .+++++|.||++||++|+.+.|.+.++++.+++ ..+.++.+ +..+++..+++.++|++++|+
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~~~ 81 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILFFP 81 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEEEc
Confidence 56889999999765 458999999999999999999999999999875 35888888 445788899999999999999
Q ss_pred CCe---EEEeecCcc
Q psy160 270 NGN---PLIFEGENK 281 (346)
Q Consensus 270 ~g~---~~~y~g~~~ 281 (346)
+|+ ...|.|..+
T Consensus 82 ~~~~~~~~~~~g~~~ 96 (104)
T cd02995 82 AGDKSNPIKYEGDRT 96 (104)
T ss_pred CCCcCCceEccCCcC
Confidence 876 567888875
No 76
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.56 E-value=4.7e-13 Score=117.75 Aligned_cols=235 Identities=17% Similarity=0.300 Sum_probs=157.1
Q ss_pred cccCceeecCHHHHHHHHhcCCcEEEEEECCCChhHH---H--HHH-HHHHHHhhccCCCcEEEEeC---ChhhHHhhCC
Q psy160 84 EIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSV---K--VLE-RLEKIDGETDNMDITFVKMA---DPRYARKWGV 154 (346)
Q Consensus 84 ~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~---~--~~~-~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i 154 (346)
++.+.|+.||.+||.+.+++.+..+|+|+.|--.+-. + +.. .++-+|+.+...+|+|+.+| ..++++++|+
T Consensus 31 DGkDRVi~LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv 110 (383)
T PF01216_consen 31 DGKDRVIDLNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGV 110 (383)
T ss_dssp SSS--CEEE-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT-
T ss_pred CCccceEEcchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCc
Confidence 4667999999999999999999999999988643321 1 122 45666777777789999887 7789999999
Q ss_pred CCcceEEEEecCCcceecCCcchhHHHHHHHhhccccCcEEEc-cHHHHHHHHh-ccceEEEEEEcCCChhhHHHHHHHH
Q psy160 155 TKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQKTEDRIELI-TRVMLETMVE-ETQYLAVYFYKLNCNICDQILEGLE 232 (346)
Q Consensus 155 ~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~~~~~~~~v~~l-~~~~~~~~~~-~~~~~lv~F~~~~c~~c~~~~~~~~ 232 (346)
...++|.+|++|+.+.|+|.++.. .+++|+......+ |..+ +..+++.+-+ +..+.+|.|+.+.-+ .....|+
T Consensus 111 ~E~~SiyVfkd~~~IEydG~~saD-tLVeFl~dl~edP-VeiIn~~~e~~~Fe~ied~~klIGyFk~~~s---~~yk~Fe 185 (383)
T PF01216_consen 111 EEEGSIYVFKDGEVIEYDGERSAD-TLVEFLLDLLEDP-VEIINNKHELKAFERIEDDIKLIGYFKSEDS---EHYKEFE 185 (383)
T ss_dssp -STTEEEEEETTEEEEE-S--SHH-HHHHHHHHHHSSS-EEEE-SHHHHHHHHH--SS-EEEEE-SSTTS---HHHHHHH
T ss_pred cccCcEEEEECCcEEEecCccCHH-HHHHHHHHhcccc-hhhhcChhhhhhhhhcccceeEEEEeCCCCc---HHHHHHH
Confidence 999999999999999999999954 9999999988764 5444 4556655533 446888888876422 3467899
Q ss_pred HHHhhcCcCceEEEEEcChhhhhhCCCccccEEEEEeC--CeEEEeecCccccccchhhhhhhccCCCCCCcccCCCCCC
Q psy160 233 KVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRN--GNPLIFEGENKILKGTYIGTYISTKAFSLIPFCFSEKHPG 310 (346)
Q Consensus 233 ~la~~~~~~~i~~~~i~~~~~~~~~~i~~~Pti~~~~~--g~~~~y~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 310 (346)
++|..++. .+.|+.+-++.+|+++++. .-.+-+|+. .+|+...|.... + .-+..|++..+-|.+.+++.++...
T Consensus 186 eAAe~F~p-~IkFfAtfd~~vAk~L~lK-~nev~fyepF~~~pi~ip~~p~~-e-~e~~~fi~~h~rptlrkl~~~~m~e 261 (383)
T PF01216_consen 186 EAAEHFQP-YIKFFATFDKKVAKKLGLK-LNEVDFYEPFMDEPITIPGKPYT-E-EELVEFIEEHKRPTLRKLRPEDMFE 261 (383)
T ss_dssp HHHHHCTT-TSEEEEE-SHHHHHHHT-S-TT-EEEE-TTSSSEEEESSSS---H-HHHHHHHHHT-S-SEEE--GGGHHH
T ss_pred HHHHhhcC-ceeEEEEecchhhhhcCcc-ccceeeeccccCCCccCCCCCCC-H-HHHHHHHHHhchhHhhhCChhhhhh
Confidence 99999996 8999999999999999996 777888875 357777765432 2 2288889988888888887776322
Q ss_pred ccchhhHHhhcceeEEeeccc
Q psy160 311 AFQTELVLRSLKIKIIGKCED 331 (346)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~ 331 (346)
.-... -.-+.|+.|++.
T Consensus 262 ~Wedd----~~g~hIvaFaee 278 (383)
T PF01216_consen 262 TWEDD----IDGIHIVAFAEE 278 (383)
T ss_dssp HHHSS----SSSEEEEEE--T
T ss_pred hhccc----CCCceEEEEecC
Confidence 22221 235667777763
No 77
>PRK10996 thioredoxin 2; Provisional
Probab=99.56 E-value=4e-14 Score=113.50 Aligned_cols=97 Identities=19% Similarity=0.411 Sum_probs=81.5
Q ss_pred cEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEe
Q psy160 193 RIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~ 269 (346)
.+..++.++++++++++++++|.||++||++|+.+.|.+.++++++.+ ++.++++ .+++++++|+|+++|++++|+
T Consensus 36 ~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~ 114 (139)
T PRK10996 36 EVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAERELSARFRIRSIPTIMIFK 114 (139)
T ss_pred CCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCCHHHHHhcCCCccCEEEEEE
Confidence 445678899999988899999999999999999999999999999876 7888888 678999999999999999999
Q ss_pred CCeEEE-eecCccccccchhhhhhh
Q psy160 270 NGNPLI-FEGENKILKGTYIGTYIS 293 (346)
Q Consensus 270 ~g~~~~-y~g~~~~~~~~~~~~~i~ 293 (346)
+|+.+. +.|..+.+. +..|++
T Consensus 115 ~G~~v~~~~G~~~~e~---l~~~l~ 136 (139)
T PRK10996 115 NGQVVDMLNGAVPKAP---FDSWLN 136 (139)
T ss_pred CCEEEEEEcCCCCHHH---HHHHHH
Confidence 998654 567654322 555554
No 78
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.56 E-value=3.1e-14 Score=108.20 Aligned_cols=81 Identities=15% Similarity=0.348 Sum_probs=68.3
Q ss_pred cHHHHHHHHhc--cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cC---hhhhhhCCCccccEEEEEe
Q psy160 198 TRVMLETMVEE--TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QD---PQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 198 ~~~~~~~~~~~--~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~---~~~~~~~~i~~~Pti~~~~ 269 (346)
+.++|++.+.+ +++++|.|||+||++|+.+.|.++++++.+. ++.|+.+ .+ .+++++|+|+++||+++|+
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~ 79 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN--DVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK 79 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--CCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence 45788887654 7899999999999999999999999999983 6888888 23 3789999999999999999
Q ss_pred CCeEE-EeecCc
Q psy160 270 NGNPL-IFEGEN 280 (346)
Q Consensus 270 ~g~~~-~y~g~~ 280 (346)
+|+.+ .+.|..
T Consensus 80 ~G~~v~~~~G~~ 91 (103)
T cd02985 80 DGEKIHEEEGIG 91 (103)
T ss_pred CCeEEEEEeCCC
Confidence 99854 567754
No 79
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.56 E-value=3.2e-14 Score=107.60 Aligned_cols=88 Identities=15% Similarity=0.209 Sum_probs=77.2
Q ss_pred cEEEccHHHHHHHHhccceEEEEEEcCC--ChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEE
Q psy160 193 RIELITRVMLETMVEETQYLAVYFYKLN--CNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVY 267 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~--c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~ 267 (346)
....++..+|++.++.+.+++|.||++| |++|..+.|.+.++++++.+ .+.|+++ .++.++.+|+|+++||+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~-~v~f~kVdid~~~~la~~f~V~sIPTli~ 89 (111)
T cd02965 11 GWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG-RFRAAVVGRADEQALAARFGVLRTPALLF 89 (111)
T ss_pred CCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC-cEEEEEEECCCCHHHHHHcCCCcCCEEEE
Confidence 3457888999998888899999999997 99999999999999999986 6888888 7889999999999999999
Q ss_pred EeCCeEE-EeecCcc
Q psy160 268 FRNGNPL-IFEGENK 281 (346)
Q Consensus 268 ~~~g~~~-~y~g~~~ 281 (346)
|++|+.+ ...|..+
T Consensus 90 fkdGk~v~~~~G~~~ 104 (111)
T cd02965 90 FRDGRYVGVLAGIRD 104 (111)
T ss_pred EECCEEEEEEeCccC
Confidence 9999866 3566554
No 80
>PRK09381 trxA thioredoxin; Provisional
Probab=99.55 E-value=4.6e-14 Score=108.50 Aligned_cols=88 Identities=26% Similarity=0.453 Sum_probs=76.2
Q ss_pred cEEEccHHHHHH-HHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEE
Q psy160 193 RIELITRVMLET-MVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYF 268 (346)
Q Consensus 193 ~v~~l~~~~~~~-~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~ 268 (346)
.+..++.++|++ +++.+++++|.||++||++|+.+.|.++++++.+.+ .+.++.+ .++.++++|+|+++|++++|
T Consensus 4 ~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 82 (109)
T PRK09381 4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 82 (109)
T ss_pred cceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCChhHHHhCCCCcCCEEEEE
Confidence 566788889987 566788999999999999999999999999999986 6888888 57888999999999999999
Q ss_pred eCCeEE-EeecCcc
Q psy160 269 RNGNPL-IFEGENK 281 (346)
Q Consensus 269 ~~g~~~-~y~g~~~ 281 (346)
++|+.+ .+.|..+
T Consensus 83 ~~G~~~~~~~G~~~ 96 (109)
T PRK09381 83 KNGEVAATKVGALS 96 (109)
T ss_pred eCCeEEEEecCCCC
Confidence 999854 5667754
No 81
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.55 E-value=4.3e-14 Score=109.38 Aligned_cols=85 Identities=22% Similarity=0.348 Sum_probs=72.0
Q ss_pred CcEEEccHHHHHHHHhcc---ceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEE
Q psy160 192 DRIELITRVMLETMVEET---QYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPAL 265 (346)
Q Consensus 192 ~~v~~l~~~~~~~~~~~~---~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti 265 (346)
+.+..++.++|.+.+.+. ++++|.||+|||++|+.+.|.++++|+++. ++.|+++ .+ .++++|+|+++||+
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~~-~l~~~~~i~~~Pt~ 80 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP--ETKFVKINAEKA-FLVNYLDIKVLPTL 80 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchhh-HHHHhcCCCcCCEE
Confidence 356678889998876654 799999999999999999999999999986 5788888 33 89999999999999
Q ss_pred EEEeCCeEE-EeecC
Q psy160 266 VYFRNGNPL-IFEGE 279 (346)
Q Consensus 266 ~~~~~g~~~-~y~g~ 279 (346)
++|++|+.+ .+.|.
T Consensus 81 ~~f~~G~~v~~~~G~ 95 (113)
T cd02957 81 LVYKNGELIDNIVGF 95 (113)
T ss_pred EEEECCEEEEEEecH
Confidence 999999865 34453
No 82
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.55 E-value=5.3e-14 Score=106.23 Aligned_cols=77 Identities=16% Similarity=0.307 Sum_probs=67.1
Q ss_pred HHHHHHHHh--ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCeE
Q psy160 199 RVMLETMVE--ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273 (346)
Q Consensus 199 ~~~~~~~~~--~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~ 273 (346)
.+++++.+. ++++++|.|+|+||++|+.|.|.++++|+++++ .+.|+++ +.+++++.|+|++.||+++|++|+.
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~-~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh 80 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK-MASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH 80 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC-ceEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence 356777544 578999999999999999999999999999984 3888888 7899999999999999999999986
Q ss_pred EEe
Q psy160 274 LIF 276 (346)
Q Consensus 274 ~~y 276 (346)
+.-
T Consensus 81 ~~~ 83 (114)
T cd02986 81 MKV 83 (114)
T ss_pred EEE
Confidence 654
No 83
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.53 E-value=4.2e-14 Score=109.39 Aligned_cols=85 Identities=18% Similarity=0.275 Sum_probs=72.2
Q ss_pred CceeecCHHHHHHHHhcC---CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC--ChhhHHhhCCCCcceEE
Q psy160 87 NEIEEVNRRMLDKLLEEN---EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA--DPRYARKWGVTKLPAVV 161 (346)
Q Consensus 87 ~~v~~l~~~~~~~~~~~~---~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~--~~~l~~~~~i~~~Ptl~ 161 (346)
+.+.++++++|.+.+.+. ++++|.||+|||++|+.+.|.++++++.+.+ +.|+++| ...++++|+|+++||++
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~--v~f~~vd~~~~~l~~~~~i~~~Pt~~ 81 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE--TKFVKINAEKAFLVNYLDIKVLPTLL 81 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--cEEEEEEchhhHHHHhcCCCcCCEEE
Confidence 468889999999988765 7899999999999999999999999998754 6677776 22899999999999999
Q ss_pred EEecCCcc-eecC
Q psy160 162 YFRHRFPS-IYRG 173 (346)
Q Consensus 162 ~~~~g~~~-~y~g 173 (346)
+|++|+.. .+.|
T Consensus 82 ~f~~G~~v~~~~G 94 (113)
T cd02957 82 VYKNGELIDNIVG 94 (113)
T ss_pred EEECCEEEEEEec
Confidence 99999843 3444
No 84
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.53 E-value=7.4e-14 Score=107.78 Aligned_cols=85 Identities=19% Similarity=0.377 Sum_probs=72.7
Q ss_pred cEEEccH-HHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEE
Q psy160 193 RIELITR-VMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYF 268 (346)
Q Consensus 193 ~v~~l~~-~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~ 268 (346)
.+..++. ++|.+.++++++++|.||++||++|+.+.|.++++++++. ++.|+++ .+++++++|+|.+.||+++|
T Consensus 5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~f 82 (113)
T cd02989 5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAEKAPFLVEKLNIKVLPTVILF 82 (113)
T ss_pred CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC--CCEEEEEEcccCHHHHHHCCCccCCEEEEE
Confidence 3445554 8999988888999999999999999999999999999886 5788888 67789999999999999999
Q ss_pred eCCeEE-EeecC
Q psy160 269 RNGNPL-IFEGE 279 (346)
Q Consensus 269 ~~g~~~-~y~g~ 279 (346)
++|+.+ ++.|.
T Consensus 83 k~G~~v~~~~g~ 94 (113)
T cd02989 83 KNGKTVDRIVGF 94 (113)
T ss_pred ECCEEEEEEECc
Confidence 999865 34443
No 85
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.53 E-value=3.7e-14 Score=108.10 Aligned_cols=91 Identities=13% Similarity=0.288 Sum_probs=73.6
Q ss_pred HHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc--CceEEEEE---cChhhhhhCCCccccEEEEEeCCeEE
Q psy160 200 VMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDI--YGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPL 274 (346)
Q Consensus 200 ~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~--~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~~ 274 (346)
++|+++ .++++++|.||++||++|+.+.|.++++++.+++ ..+.++.+ ..+.++++|+|.++||+++|++|...
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~~ 85 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLAY 85 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCce
Confidence 567765 4567999999999999999999999999999853 24778777 56889999999999999999988777
Q ss_pred EeecCccccccchhhhhhhc
Q psy160 275 IFEGENKILKGTYIGTYIST 294 (346)
Q Consensus 275 ~y~g~~~~~~~~~~~~~i~~ 294 (346)
.|.|.++.+. +..|+++
T Consensus 86 ~~~G~~~~~~---l~~~~~~ 102 (104)
T cd03000 86 NYRGPRTKDD---IVEFANR 102 (104)
T ss_pred eecCCCCHHH---HHHHHHh
Confidence 7888775332 5555543
No 86
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.53 E-value=5.5e-14 Score=107.13 Aligned_cols=89 Identities=17% Similarity=0.219 Sum_probs=73.6
Q ss_pred HHHHHHHhcCCcEEEEEECCCChhHHHHHHHH---HHHHhhccCCCcEEEEeC-------ChhhHHhhCCCCcceEEEEe
Q psy160 95 RMLDKLLEENEFVTVFFYETDHKDSVKVLERL---EKIDGETDNMDITFVKMA-------DPRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 95 ~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~---~~~a~~~~~~~i~~~~~~-------~~~l~~~~~i~~~Ptl~~~~ 164 (346)
+.|++.++++++++|.||++||++|+.+.+.+ .++++.+.+ ++.++.+| ...++++|+|.++||+++|.
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~ 80 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYG 80 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 56888888999999999999999999999988 577777754 57777665 25789999999999999998
Q ss_pred --cCC-cceecCCcchhHHHHHHH
Q psy160 165 --HRF-PSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 165 --~g~-~~~y~g~~~~~~~i~~fi 185 (346)
+|+ +..+.|..+.+ +|.+++
T Consensus 81 ~~~g~~~~~~~G~~~~~-~l~~~l 103 (104)
T cd02953 81 PGGEPEPLRLPGFLTAD-EFLEAL 103 (104)
T ss_pred CCCCCCCcccccccCHH-HHHHHh
Confidence 566 56788988844 788776
No 87
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.52 E-value=5.7e-14 Score=106.42 Aligned_cols=94 Identities=24% Similarity=0.512 Sum_probs=79.1
Q ss_pred ccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcC-ceEEEEE---cChhhhhhCCCccccEEEEEeCCe
Q psy160 197 ITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIY-GIHMVKI---QDPQLAKRYSIKTFPALVYFRNGN 272 (346)
Q Consensus 197 l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~-~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~ 272 (346)
++.++|++.+.++++++|.||++||++|+.+.+.++++++.+++. .+.++.+ .++.++++|+|+++|++++|++|+
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence 467889998888889999999999999999999999999998753 3888887 678899999999999999999887
Q ss_pred -EEEeecCccccccchhhhhhh
Q psy160 273 -PLIFEGENKILKGTYIGTYIS 293 (346)
Q Consensus 273 -~~~y~g~~~~~~~~~~~~~i~ 293 (346)
...|.|..+.+. +..|+.
T Consensus 81 ~~~~~~g~~~~~~---l~~~i~ 99 (102)
T TIGR01126 81 KPVDYEGGRDLEA---IVEFVN 99 (102)
T ss_pred cceeecCCCCHHH---HHHHHH
Confidence 778999876332 455544
No 88
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.52 E-value=1.5e-13 Score=103.79 Aligned_cols=95 Identities=20% Similarity=0.347 Sum_probs=78.3
Q ss_pred cCHHHHHHHHhcC-CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCC
Q psy160 92 VNRRMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRF 167 (346)
Q Consensus 92 l~~~~~~~~~~~~-~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~ 167 (346)
++.+++.+.+.++ ++++|.||++||++|+.+.|.++++++.+.+ ++.++.+| +..++++|+|.++||+++|++|+
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence 4677888877664 5999999999999999999999999988753 37777765 66899999999999999999887
Q ss_pred c-ceecCCcchhHHHHHHHhhc
Q psy160 168 P-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 168 ~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
. ..+.|..+. +.+.+|+.+.
T Consensus 80 ~~~~~~g~~~~-~~l~~~l~~~ 100 (101)
T TIGR01068 80 EVDRSVGALPK-AALKQLINKN 100 (101)
T ss_pred EeeeecCCCCH-HHHHHHHHhh
Confidence 4 456787764 4899998764
No 89
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.52 E-value=1.4e-13 Score=103.40 Aligned_cols=90 Identities=17% Similarity=0.342 Sum_probs=73.6
Q ss_pred CHHHHHHHHhcC--CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCC
Q psy160 93 NRRMLDKLLEEN--EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRF 167 (346)
Q Consensus 93 ~~~~~~~~~~~~--~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~ 167 (346)
+.+++++.+.+. ++++|.||++||++|+.+.|.++++++.+ ..++.++.+| .+.++++|+|+++||+++|++|+
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 79 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT 79 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHh-CCceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence 467888888877 89999999999999999999999999986 3358888877 66899999999999999999988
Q ss_pred cce-ecCCcchhHHHHHHH
Q psy160 168 PSI-YRGDLSEEEEVLQWL 185 (346)
Q Consensus 168 ~~~-y~g~~~~~~~i~~fi 185 (346)
... +.|... + +|.+.+
T Consensus 80 ~~~~~~g~~~-~-~l~~~~ 96 (97)
T cd02984 80 IVDRVSGADP-K-ELAKKV 96 (97)
T ss_pred EEEEEeCCCH-H-HHHHhh
Confidence 543 556433 3 566554
No 90
>PTZ00062 glutaredoxin; Provisional
Probab=99.52 E-value=7.1e-14 Score=118.01 Aligned_cols=142 Identities=10% Similarity=0.183 Sum_probs=96.1
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcCChHHHHhcCCCCCCeEEEEeCCcee-eecCCCCCHHHHHHHHhc
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQVPL-LYDGDLFDEEKILTWLTS 79 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~~c~~~~i~~~Ptl~~f~~~~~~-~y~G~~~~~~~i~~~i~~ 79 (346)
++|+|+||++|+.+.|.+.++++++. ++.|+.++.. |+|.+.||+++|++|..+ .+.|. +. ..+..++..
T Consensus 22 l~f~a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d-----~~V~~vPtfv~~~~g~~i~r~~G~-~~-~~~~~~~~~ 92 (204)
T PTZ00062 22 LYVKSSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA-----DANNEYGVFEFYQNSQLINSLEGC-NT-STLVSFIRG 92 (204)
T ss_pred EEEeCCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc-----cCcccceEEEEEECCEEEeeeeCC-CH-HHHHHHHHH
Confidence 47889999999999999999999874 5889888744 999999999999999765 35563 23 367777766
Q ss_pred cCCccccCceeecCHHHHHHHHhcCCcEEEEEEC-----CCChhHHHHHHHHHHHHhhccCCCcEEEEeC-Chh----hH
Q psy160 80 QDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYE-----TDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPR----YA 149 (346)
Q Consensus 80 ~~~p~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~-----~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~----l~ 149 (346)
...+.. .+-..+-.++++.+++. +.|.. |+|++|++....|.+..-. .....++ .++ +.
T Consensus 93 ~~~~~~----~~~~~~~v~~li~~~~V--vvf~Kg~~~~p~C~~C~~~k~~L~~~~i~-----y~~~DI~~d~~~~~~l~ 161 (204)
T PTZ00062 93 WAQKGS----SEDTVEKIERLIRNHKI--LLFMKGSKTFPFCRFSNAVVNMLNSSGVK-----YETYNIFEDPDLREELK 161 (204)
T ss_pred HcCCCC----HHHHHHHHHHHHhcCCE--EEEEccCCCCCCChhHHHHHHHHHHcCCC-----EEEEEcCCCHHHHHHHH
Confidence 554311 11123456666666554 45543 7999999888777754322 2223332 222 33
Q ss_pred HhhCCCCcceEEE
Q psy160 150 RKWGVTKLPAVVY 162 (346)
Q Consensus 150 ~~~~i~~~Ptl~~ 162 (346)
+.-|-..+|.+.+
T Consensus 162 ~~sg~~TvPqVfI 174 (204)
T PTZ00062 162 VYSNWPTYPQLYV 174 (204)
T ss_pred HHhCCCCCCeEEE
Confidence 3446667787775
No 91
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.51 E-value=1.4e-13 Score=106.28 Aligned_cols=81 Identities=20% Similarity=0.335 Sum_probs=71.3
Q ss_pred CceeecCH-HHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 87 NEIEEVNR-RMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 87 ~~v~~l~~-~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
+.+.+++. ++|++.+.+++.++|+||+|||++|+.+.|.++++++.+.+ +.|+++| .+.++++|+|.+.||+++
T Consensus 4 g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~--i~f~~Vd~~~~~~l~~~~~v~~vPt~l~ 81 (113)
T cd02989 4 GKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE--TKFIKVNAEKAPFLVEKLNIKVLPTVIL 81 (113)
T ss_pred CCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC--CEEEEEEcccCHHHHHHCCCccCCEEEE
Confidence 46777776 99999999889999999999999999999999999998754 6777776 667999999999999999
Q ss_pred EecCCcc
Q psy160 163 FRHRFPS 169 (346)
Q Consensus 163 ~~~g~~~ 169 (346)
|++|+.+
T Consensus 82 fk~G~~v 88 (113)
T cd02989 82 FKNGKTV 88 (113)
T ss_pred EECCEEE
Confidence 9999743
No 92
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.51 E-value=2.8e-11 Score=106.71 Aligned_cols=240 Identities=18% Similarity=0.244 Sum_probs=164.5
Q ss_pred HHHHHhhhcccCCeEEEcC---ChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHHHHhccCCccccCceeecC-
Q psy160 18 LEHIDGDADQYGIDMVKIS---DTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTWLTSQDVFEIKNEIEEVN- 93 (346)
Q Consensus 18 ~~~~a~~~~~~~i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~~i~~~~~p~~~~~v~~l~- 93 (346)
++-+|+.+...||+|+.+| +.++++++|+..-+++.+|++|..+.|.|.+++ +-+++||.+-... +|..++
T Consensus 79 LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E~~SiyVfkd~~~IEydG~~sa-DtLVeFl~dl~ed----PVeiIn~ 153 (383)
T PF01216_consen 79 LELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEEEGSIYVFKDGEVIEYDGERSA-DTLVEFLLDLLED----PVEIINN 153 (383)
T ss_dssp HHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--STTEEEEEETTEEEEE-S--SH-HHHHHHHHHHHSS----SEEEE-S
T ss_pred HHHHHHhccccCcceEEeccHHHHHHHHhcCccccCcEEEEECCcEEEecCccCH-HHHHHHHHHhccc----chhhhcC
Confidence 4444555577788887775 679999999999999999999999999999888 6999999987765 787776
Q ss_pred HHHHHHHHh-cCCcEEEEEECCC-ChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEec--CCcc
Q psy160 94 RRMLDKLLE-ENEFVTVFFYETD-HKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRH--RFPS 169 (346)
Q Consensus 94 ~~~~~~~~~-~~~~~lv~F~~~~-C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~--g~~~ 169 (346)
..++..+-. ...+-+|-|+.+. ..| ..+|+.+|..+... |.|..+-++.+|++++++ .=.+-+|+. .+|+
T Consensus 154 ~~e~~~Fe~ied~~klIGyFk~~~s~~----yk~FeeAAe~F~p~-IkFfAtfd~~vAk~L~lK-~nev~fyepF~~~pi 227 (383)
T PF01216_consen 154 KHELKAFERIEDDIKLIGYFKSEDSEH----YKEFEEAAEHFQPY-IKFFATFDKKVAKKLGLK-LNEVDFYEPFMDEPI 227 (383)
T ss_dssp HHHHHHHHH--SS-EEEEE-SSTTSHH----HHHHHHHHHHCTTT-SEEEEE-SHHHHHHHT-S-TT-EEEE-TTSSSEE
T ss_pred hhhhhhhhhcccceeEEEEeCCCCcHH----HHHHHHHHHhhcCc-eeEEEEecchhhhhcCcc-ccceeeeccccCCCc
Confidence 444544433 2356778877764 333 45788999999776 999999999999999997 778888886 4588
Q ss_pred eecCCcchhHHHHHHHhhccccCcEEEccHHHHHHH-Hh-ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc-CceEEE
Q psy160 170 IYRGDLSEEEEVLQWLITQKTEDRIELITRVMLETM-VE-ETQYLAVYFYKLNCNICDQILEGLEKVDDECDI-YGIHMV 246 (346)
Q Consensus 170 ~y~g~~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~-~~-~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~-~~i~~~ 246 (346)
...|...++.+|++|+.++..| .+..++.+++-+. -. -++.-+|.|...--+.-..+...++++|+.... .++.+.
T Consensus 228 ~ip~~p~~e~e~~~fi~~h~rp-tlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~Lsiv 306 (383)
T PF01216_consen 228 TIPGKPYTEEELVEFIEEHKRP-TLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIV 306 (383)
T ss_dssp EESSSS--HHHHHHHHHHT-S--SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EE
T ss_pred cCCCCCCCHHHHHHHHHHhchh-HhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEE
Confidence 8888777788999999999988 8889998886554 33 245666777666667778999999999998753 257777
Q ss_pred EE---cC----hhhhhhCCCc-cccEEEEEe
Q psy160 247 KI---QD----PQLAKRYSIK-TFPALVYFR 269 (346)
Q Consensus 247 ~i---~~----~~~~~~~~i~-~~Pti~~~~ 269 (346)
.| +. +-+.+.|+|. .-|.|-+..
T Consensus 307 wIDPD~fPllv~yWE~tF~Idl~~PqIGvVn 337 (383)
T PF01216_consen 307 WIDPDDFPLLVPYWEKTFGIDLSRPQIGVVN 337 (383)
T ss_dssp EE-GGG-HHHHHHHHHHHTT-TTS-EEEEEE
T ss_pred EECCCCCchhHHHHHhhcCccccCCceeEEe
Confidence 77 22 2346678875 349998885
No 93
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.51 E-value=2.1e-13 Score=102.37 Aligned_cols=81 Identities=21% Similarity=0.458 Sum_probs=69.3
Q ss_pred cHHHHHHHHhcc--ceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCe
Q psy160 198 TRVMLETMVEET--QYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGN 272 (346)
Q Consensus 198 ~~~~~~~~~~~~--~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~ 272 (346)
+.+++++++.+. ++++|.||++||++|+.+.+.++++++.+.. .+.++.+ ..++++++|+|+++||+++|++|+
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~-~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 79 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP-SVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT 79 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC-ceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence 457788887766 9999999999999999999999999999743 7888888 567899999999999999999998
Q ss_pred EEEe-ecC
Q psy160 273 PLIF-EGE 279 (346)
Q Consensus 273 ~~~y-~g~ 279 (346)
.+.. .|.
T Consensus 80 ~~~~~~g~ 87 (97)
T cd02984 80 IVDRVSGA 87 (97)
T ss_pred EEEEEeCC
Confidence 6544 443
No 94
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.50 E-value=9.8e-14 Score=105.70 Aligned_cols=88 Identities=25% Similarity=0.528 Sum_probs=74.5
Q ss_pred EEEccHHHHHHHHhc-cceEEEEEEcCCChhhHHHHHHHHHHHhhcCc-CceEEEEE---c-ChhhhhhCCCccccEEEE
Q psy160 194 IELITRVMLETMVEE-TQYLAVYFYKLNCNICDQILEGLEKVDDECDI-YGIHMVKI---Q-DPQLAKRYSIKTFPALVY 267 (346)
Q Consensus 194 v~~l~~~~~~~~~~~-~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~-~~i~~~~i---~-~~~~~~~~~i~~~Pti~~ 267 (346)
+..++.+++++.+++ +++++|.||++||++|+.+.|.+.++++.++. ..+.++.+ . +++++++|+|+++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 457788899887764 45899999999999999999999999999872 25888888 4 688999999999999999
Q ss_pred EeCC--eEEEeecCcc
Q psy160 268 FRNG--NPLIFEGENK 281 (346)
Q Consensus 268 ~~~g--~~~~y~g~~~ 281 (346)
|++| ....|.|.++
T Consensus 82 ~~~~~~~~~~~~g~~~ 97 (105)
T cd02998 82 FPKGSTEPVKYEGGRD 97 (105)
T ss_pred EeCCCCCccccCCccC
Confidence 9877 3566888765
No 95
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.48 E-value=1.9e-13 Score=128.64 Aligned_cols=101 Identities=14% Similarity=0.425 Sum_probs=81.5
Q ss_pred cCcEEEccHHHHHHHHh---ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c-C-hhhh-hhCCCccc
Q psy160 191 EDRIELITRVMLETMVE---ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q-D-PQLA-KRYSIKTF 262 (346)
Q Consensus 191 ~~~v~~l~~~~~~~~~~---~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~-~-~~~~-~~~~i~~~ 262 (346)
...|..++.++|+++++ .+++++|.||+|||++|+.|.|.|+++|+++.+.++.|+.+ + + ..++ ++|+|+++
T Consensus 350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~ 429 (463)
T TIGR00424 350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF 429 (463)
T ss_pred CCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCcc
Confidence 45778899999999875 67899999999999999999999999999998645788877 2 2 2444 68999999
Q ss_pred cEEEEEeCCe--EEEeec-Cccccccchhhhhhhc
Q psy160 263 PALVYFRNGN--PLIFEG-ENKILKGTYIGTYIST 294 (346)
Q Consensus 263 Pti~~~~~g~--~~~y~g-~~~~~~~~~~~~~i~~ 294 (346)
||+++|++|+ ++.|.| .++.+. |..|++.
T Consensus 430 PTii~Fk~g~~~~~~Y~~g~R~~e~---L~~Fv~~ 461 (463)
T TIGR00424 430 PTILFFPKHSSRPIKYPSEKRDVDS---LMSFVNL 461 (463)
T ss_pred ceEEEEECCCCCceeCCCCCCCHHH---HHHHHHh
Confidence 9999999884 678985 675433 6666654
No 96
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.48 E-value=2.2e-13 Score=105.44 Aligned_cols=80 Identities=14% Similarity=0.341 Sum_probs=68.4
Q ss_pred cEEEccHHHHHHHHhc-cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcC--ceEEEEE-----cChhhhhhCCCccccE
Q psy160 193 RIELITRVMLETMVEE-TQYLAVYFYKLNCNICDQILEGLEKVDDECDIY--GIHMVKI-----QDPQLAKRYSIKTFPA 264 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~-~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~--~i~~~~i-----~~~~~~~~~~i~~~Pt 264 (346)
.+..++.++|++.+++ +++++|.||++||++|+.+.|.|+++++.+++. .+.++.+ .+.+++++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 4678899999997654 569999999999999999999999999988532 3778777 2457899999999999
Q ss_pred EEEEeCCe
Q psy160 265 LVYFRNGN 272 (346)
Q Consensus 265 i~~~~~g~ 272 (346)
+++|++|.
T Consensus 82 ~~lf~~~~ 89 (114)
T cd02992 82 LRYFPPFS 89 (114)
T ss_pred EEEECCCC
Confidence 99999886
No 97
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.48 E-value=2.1e-13 Score=102.72 Aligned_cols=86 Identities=23% Similarity=0.502 Sum_probs=75.2
Q ss_pred EccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcC-cCceEEEEE---cChhhhhhCCCccccEEEEEeCC
Q psy160 196 LITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECD-IYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNG 271 (346)
Q Consensus 196 ~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~-~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g 271 (346)
.++.+++.+.+++.++++|.||++||++|+.+.+.+.++++.++ +..+.++.+ .+..++++|+|+++|++++|+++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence 46788999988888899999999999999999999999999984 237889988 46899999999999999999988
Q ss_pred --eEEEeecCcc
Q psy160 272 --NPLIFEGENK 281 (346)
Q Consensus 272 --~~~~y~g~~~ 281 (346)
....|.|..+
T Consensus 82 ~~~~~~~~g~~~ 93 (101)
T cd02961 82 SKEPVKYEGPRT 93 (101)
T ss_pred CcccccCCCCcC
Confidence 4667888764
No 98
>PTZ00051 thioredoxin; Provisional
Probab=99.46 E-value=7.2e-13 Score=99.71 Aligned_cols=83 Identities=23% Similarity=0.461 Sum_probs=71.5
Q ss_pred EccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCe
Q psy160 196 LITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGN 272 (346)
Q Consensus 196 ~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~ 272 (346)
..+.++++++++.+++++|.||++||++|+.+.+.++++++.+. ++.++.+ .+..++++|+|+++||+++|++|+
T Consensus 5 i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 82 (98)
T PTZ00051 5 VTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVDELSEVAEKENITSMPTFKVFKNGS 82 (98)
T ss_pred ecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECcchHHHHHHCCCceeeEEEEEeCCe
Confidence 44568888999999999999999999999999999999999875 4777777 567899999999999999999998
Q ss_pred EE-EeecCc
Q psy160 273 PL-IFEGEN 280 (346)
Q Consensus 273 ~~-~y~g~~ 280 (346)
.+ .+.|..
T Consensus 83 ~~~~~~G~~ 91 (98)
T PTZ00051 83 VVDTLLGAN 91 (98)
T ss_pred EEEEEeCCC
Confidence 65 466653
No 99
>PLN02309 5'-adenylylsulfate reductase
Probab=99.46 E-value=3.4e-13 Score=126.97 Aligned_cols=101 Identities=15% Similarity=0.437 Sum_probs=82.4
Q ss_pred cCcEEEccHHHHHHHHh---ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c--Chhhhh-hCCCccc
Q psy160 191 EDRIELITRVMLETMVE---ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q--DPQLAK-RYSIKTF 262 (346)
Q Consensus 191 ~~~v~~l~~~~~~~~~~---~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~--~~~~~~-~~~i~~~ 262 (346)
...|..++.++++++++ .+++++|.||+|||++|+.|.|.|+++++.+.+.++.|+++ + +.++++ +|+|+++
T Consensus 344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~ 423 (457)
T PLN02309 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF 423 (457)
T ss_pred CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCcee
Confidence 34777899999999763 67899999999999999999999999999997656999998 2 457786 6999999
Q ss_pred cEEEEEeCCe--EEEeec-Cccccccchhhhhhhc
Q psy160 263 PALVYFRNGN--PLIFEG-ENKILKGTYIGTYIST 294 (346)
Q Consensus 263 Pti~~~~~g~--~~~y~g-~~~~~~~~~~~~~i~~ 294 (346)
||+++|++|. ++.|.| .++.+. |..|++.
T Consensus 424 PTil~f~~g~~~~v~Y~~~~R~~~~---L~~fv~~ 455 (457)
T PLN02309 424 PTILLFPKNSSRPIKYPSEKRDVDS---LLSFVNS 455 (457)
T ss_pred eEEEEEeCCCCCeeecCCCCcCHHH---HHHHHHH
Confidence 9999998774 678986 465332 6666654
No 100
>KOG0907|consensus
Probab=99.45 E-value=4.5e-13 Score=101.31 Aligned_cols=71 Identities=24% Similarity=0.572 Sum_probs=62.3
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCeEE-EeecCc
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPL-IFEGEN 280 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~~-~y~g~~ 280 (346)
.+++++|.|||+|||||+.+.|.+.+||.+|. ++.|+++ +..++++.++|+..||+++|++|+.+ .+-|..
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~--~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~ 94 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYP--DVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGAN 94 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCC--CCEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCC
Confidence 46899999999999999999999999999998 4889988 45889999999999999999999754 455654
No 101
>PTZ00051 thioredoxin; Provisional
Probab=99.45 E-value=6.8e-13 Score=99.86 Aligned_cols=85 Identities=22% Similarity=0.265 Sum_probs=71.4
Q ss_pred eec-CHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEec
Q psy160 90 EEV-NRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRH 165 (346)
Q Consensus 90 ~~l-~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~ 165 (346)
.++ +.+++++++..++.+++.||++||++|+.+.|.++++++.+.+ +.++.+| ...++++|+|.++||+++|++
T Consensus 3 ~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 80 (98)
T PTZ00051 3 HIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK--MVFVKVDVDELSEVAEKENITSMPTFKVFKN 80 (98)
T ss_pred EEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC--cEEEEEECcchHHHHHHCCCceeeEEEEEeC
Confidence 444 4688999999889999999999999999999999999997643 6666665 568999999999999999999
Q ss_pred CCcc-eecCCcc
Q psy160 166 RFPS-IYRGDLS 176 (346)
Q Consensus 166 g~~~-~y~g~~~ 176 (346)
|+.. .+.|...
T Consensus 81 g~~~~~~~G~~~ 92 (98)
T PTZ00051 81 GSVVDTLLGAND 92 (98)
T ss_pred CeEEEEEeCCCH
Confidence 9844 5777643
No 102
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.45 E-value=7.9e-13 Score=104.67 Aligned_cols=81 Identities=16% Similarity=0.208 Sum_probs=68.1
Q ss_pred ccHHHHHHHHh--ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEE-EEeC
Q psy160 197 ITRVMLETMVE--ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALV-YFRN 270 (346)
Q Consensus 197 l~~~~~~~~~~--~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~-~~~~ 270 (346)
-+.+++++.+. ++++++|.|||+||++|+.+.|.++++|+++.+ .+.|+++ +++++++.|+|++.|+++ +|++
T Consensus 9 ~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~-~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~ 87 (142)
T PLN00410 9 HSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN-FAVIYLVDITEVPDFNTMYELYDPCTVMFFFRN 87 (142)
T ss_pred CCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCCCHHHHHHcCccCCCcEEEEEEC
Confidence 35688888764 577999999999999999999999999999985 5777888 688999999999777766 9999
Q ss_pred Ce-EEEe-ec
Q psy160 271 GN-PLIF-EG 278 (346)
Q Consensus 271 g~-~~~y-~g 278 (346)
|+ .+.+ .|
T Consensus 88 g~~~vd~~tG 97 (142)
T PLN00410 88 KHIMIDLGTG 97 (142)
T ss_pred CeEEEEEecc
Confidence 98 5544 44
No 103
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.45 E-value=6.8e-13 Score=106.68 Aligned_cols=95 Identities=12% Similarity=0.117 Sum_probs=74.8
Q ss_pred HHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccC-CCcEEEEeCC---hhhHHhhCCCCcceEEEEe-cCCc
Q psy160 94 RRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDN-MDITFVKMAD---PRYARKWGVTKLPAVVYFR-HRFP 168 (346)
Q Consensus 94 ~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~-~~i~~~~~~~---~~l~~~~~i~~~Ptl~~~~-~g~~ 168 (346)
...++..+.++++++|.||++||++|+.+.|.+.++++.+.. ..+..+.++. ..++++|+|.++||+++|. +|+.
T Consensus 10 ~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~ 89 (142)
T cd02950 10 STPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNE 89 (142)
T ss_pred cCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCE
Confidence 355777778889999999999999999999999999998843 3355555553 4789999999999999995 6774
Q ss_pred -ceecCCcchhHHHHHHHhhcc
Q psy160 169 -SIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 169 -~~y~g~~~~~~~i~~fi~~~~ 189 (346)
..+.|.... ++|.+++....
T Consensus 90 v~~~~G~~~~-~~l~~~l~~l~ 110 (142)
T cd02950 90 EGQSIGLQPK-QVLAQNLDALV 110 (142)
T ss_pred EEEEeCCCCH-HHHHHHHHHHH
Confidence 357787763 36777776644
No 104
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.44 E-value=9.8e-12 Score=104.66 Aligned_cols=144 Identities=20% Similarity=0.382 Sum_probs=122.4
Q ss_pred HHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEecC--CcceecCC-cchhHHHHHHHhhccccCcEEEc
Q psy160 121 KVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHR--FPSIYRGD-LSEEEEVLQWLITQKTEDRIELI 197 (346)
Q Consensus 121 ~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~g--~~~~y~g~-~~~~~~i~~fi~~~~~~~~v~~l 197 (346)
.....|.++|+.+.+. +.|+.+.+.++++++++.. |++++|+++ ++..|.|. .+ .++|.+|+..+..| .+..+
T Consensus 7 ~~~~~f~~~A~~~~~~-~~F~~~~~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~-~~~l~~fI~~~~~P-~v~~~ 82 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGD-YQFGVTFNEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFT-PEELKKFIKKNSFP-LVPEL 82 (184)
T ss_dssp HHHHHHHHHHHHHTTT-SEEEEEE-HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTS-HHHHHHHHHHHSST-SCEEE
T ss_pred HHHHHHHHHHHhCcCC-cEEEEEcHHHHHHHhCCCC-CcEEEeccCCCCceecccccCC-HHHHHHHHHHhccc-ccccc
Confidence 5667899999998654 9999999999999999998 999999984 36889998 55 55999999999998 57799
Q ss_pred cHHHHHHHHhccce-EEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCc--cccEEEEEe
Q psy160 198 TRVMLETMVEETQY-LAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIK--TFPALVYFR 269 (346)
Q Consensus 198 ~~~~~~~~~~~~~~-~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~--~~Pti~~~~ 269 (346)
|.+++..+.....+ +++.|..........+...++.+|+.+++ .+.|+.+ ..+.+++.+|++ .+|+++++.
T Consensus 83 t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~ 159 (184)
T PF13848_consen 83 TPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKG-KINFVYVDADDFPRLLKYFGIDEDDLPALVIFD 159 (184)
T ss_dssp STTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT-TSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEE
T ss_pred chhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC-eEEEEEeehHHhHHHHHHcCCCCccCCEEEEEE
Confidence 99999999888765 77777766666778889999999999987 7888888 467899999998 899999998
No 105
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.44 E-value=1.4e-12 Score=101.92 Aligned_cols=98 Identities=13% Similarity=0.165 Sum_probs=76.8
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCC------------hhhHHhhC--
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD------------PRYARKWG-- 153 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~------------~~l~~~~~-- 153 (346)
.+..++.+++.+.+++++..+|+|+++||++|+.+.|.+.++++. .+..+.+++++. .++.++++
T Consensus 7 ~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~ 85 (122)
T TIGR01295 7 GLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP 85 (122)
T ss_pred cceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence 567789999999999999999999999999999999999999988 344577777762 14456655
Q ss_pred --CCCcceEEEEecCCcc-eecCCcchhHHHHHHHh
Q psy160 154 --VTKLPAVVYFRHRFPS-IYRGDLSEEEEVLQWLI 186 (346)
Q Consensus 154 --i~~~Ptl~~~~~g~~~-~y~g~~~~~~~i~~fi~ 186 (346)
|.+.||+++|++|+.+ ...|...+.++|.+|+.
T Consensus 86 ~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 86 TSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred ccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 5569999999999844 45675444557887753
No 106
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.42 E-value=1.4e-12 Score=98.34 Aligned_cols=93 Identities=24% Similarity=0.469 Sum_probs=74.5
Q ss_pred ccHHHHHHHHhc-cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCe
Q psy160 197 ITRVMLETMVEE-TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGN 272 (346)
Q Consensus 197 l~~~~~~~~~~~-~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~ 272 (346)
++.+++.+.+++ .++++|.||++||++|+.+.+.++++++.+.+ ++.++.+ .+..++++|+|.++|++++|++|+
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence 356778886655 55999999999999999999999999988875 6888888 577899999999999999999997
Q ss_pred EE-EeecCccccccchhhhhhh
Q psy160 273 PL-IFEGENKILKGTYIGTYIS 293 (346)
Q Consensus 273 ~~-~y~g~~~~~~~~~~~~~i~ 293 (346)
.. .+.|..+.+. +..+++
T Consensus 80 ~~~~~~g~~~~~~---l~~~l~ 98 (101)
T TIGR01068 80 EVDRSVGALPKAA---LKQLIN 98 (101)
T ss_pred EeeeecCCCCHHH---HHHHHH
Confidence 54 4556654222 555554
No 107
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.42 E-value=5.4e-13 Score=101.61 Aligned_cols=82 Identities=16% Similarity=0.244 Sum_probs=68.0
Q ss_pred HHHHHHHhccceEEEEEEcCCChhhHHHHHHH---HHHHhhcCcCceEEEEE---c----ChhhhhhCCCccccEEEEEe
Q psy160 200 VMLETMVEETQYLAVYFYKLNCNICDQILEGL---EKVDDECDIYGIHMVKI---Q----DPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 200 ~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~---~~la~~~~~~~i~~~~i---~----~~~~~~~~~i~~~Pti~~~~ 269 (346)
+.+++.++++++++|.||++||++|+.+.+.+ .++++.+.+ ++.++.+ . ...++++|+|+++||+++|+
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~ 80 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYG 80 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 46778888999999999999999999999988 578888875 7888877 2 46789999999999999998
Q ss_pred --CCe-EEEeecCccc
Q psy160 270 --NGN-PLIFEGENKI 282 (346)
Q Consensus 270 --~g~-~~~y~g~~~~ 282 (346)
+|+ ..++.|..+.
T Consensus 81 ~~~g~~~~~~~G~~~~ 96 (104)
T cd02953 81 PGGEPEPLRLPGFLTA 96 (104)
T ss_pred CCCCCCCcccccccCH
Confidence 566 4556777653
No 108
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.41 E-value=2.7e-12 Score=106.69 Aligned_cols=82 Identities=13% Similarity=0.282 Sum_probs=70.2
Q ss_pred CcEEEccH-HHHHHHHhcc---ceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--cChhhhhhCCCccccEE
Q psy160 192 DRIELITR-VMLETMVEET---QYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--QDPQLAKRYSIKTFPAL 265 (346)
Q Consensus 192 ~~v~~l~~-~~~~~~~~~~---~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~~~~~~~~~~i~~~Pti 265 (346)
..+..++. ++|.+.+... .+++|.||++||++|+.+.|.+.++|..+. .+.|++| +...++.+|+|.++||+
T Consensus 62 g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~~~l~~~f~v~~vPTl 139 (175)
T cd02987 62 GKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASATGASDEFDTDALPAL 139 (175)
T ss_pred CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccchhhHHhCCCCCCCEE
Confidence 56777877 9998876543 389999999999999999999999999985 6899999 22378999999999999
Q ss_pred EEEeCCeEEE
Q psy160 266 VYFRNGNPLI 275 (346)
Q Consensus 266 ~~~~~g~~~~ 275 (346)
++|++|+.+.
T Consensus 140 llyk~G~~v~ 149 (175)
T cd02987 140 LVYKGGELIG 149 (175)
T ss_pred EEEECCEEEE
Confidence 9999998653
No 109
>KOG1731|consensus
Probab=99.41 E-value=4.6e-13 Score=124.99 Aligned_cols=182 Identities=16% Similarity=0.200 Sum_probs=113.7
Q ss_pred ccCceeecCHHHHHHHHhcC-CcEEEEEECCCChhHHHHHHHHHHHHhhccCC--CcEEEEeC-----ChhhHHhhCCCC
Q psy160 85 IKNEIEEVNRRMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLEKIDGETDNM--DITFVKMA-----DPRYARKWGVTK 156 (346)
Q Consensus 85 ~~~~v~~l~~~~~~~~~~~~-~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~--~i~~~~~~-----~~~l~~~~~i~~ 156 (346)
..+.|.+|+.++|...+..+ +.++|.||++|||||++++|.|+++|+.+.+= -+.++.+| +..+|++|+|.+
T Consensus 37 ~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~ 116 (606)
T KOG1731|consen 37 PDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG 116 (606)
T ss_pred CCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC
Confidence 34789999999999988665 48999999999999999999999999998431 14455555 788999999999
Q ss_pred cceEEEEecCC-c----ceecCCcchhHHHHHHHhhcc-----------ccC--cEEEc-cHHHHHHHHh-ccceEEEEE
Q psy160 157 LPAVVYFRHRF-P----SIYRGDLSEEEEVLQWLITQK-----------TED--RIELI-TRVMLETMVE-ETQYLAVYF 216 (346)
Q Consensus 157 ~Ptl~~~~~g~-~----~~y~g~~~~~~~i~~fi~~~~-----------~~~--~v~~l-~~~~~~~~~~-~~~~~lv~F 216 (346)
||+|.+|..+. . ..+.|+.... ++.+.+.+.. -|. .+..- +.+.+.+-+. ....+.|.|
T Consensus 117 ~Ptlryf~~~~~~~~~G~~~~~~~~~~-ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~yvAiv~ 195 (606)
T KOG1731|consen 117 YPTLRYFPPDSQNKTDGSDVSGPVIPS-EIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANYVAIVF 195 (606)
T ss_pred CceeeecCCccccCcCCCcccCCcchh-hHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccccceeEEEE
Confidence 99999997642 1 2345544323 4555544311 121 11111 1222322222 233555656
Q ss_pred EcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCeEE
Q psy160 217 YKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPL 274 (346)
Q Consensus 217 ~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~~ 274 (346)
-.... .=.++.+-..+....+.+..+ ....+.+ ++++.+|+.+++++|+..
T Consensus 196 e~~~s------~lg~~~~l~~l~~~~v~vr~~~d~q~~~~~~-l~~~~~~~~llfrnG~~q 249 (606)
T KOG1731|consen 196 ETEPS------DLGWANLLNDLPSKQVGVRARLDTQNFPLFG-LKPDNFPLALLFRNGEQQ 249 (606)
T ss_pred ecCCc------ccHHHHHHhhccCCCcceEEEecchhccccc-cCCCCchhhhhhcCCccc
Confidence 33211 112333333332223444433 3334445 889999999999999743
No 110
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.40 E-value=2.1e-12 Score=96.99 Aligned_cols=85 Identities=19% Similarity=0.296 Sum_probs=70.2
Q ss_pred HHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCC-cceecCCc
Q psy160 100 LLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRF-PSIYRGDL 175 (346)
Q Consensus 100 ~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~-~~~y~g~~ 175 (346)
+.+.+++++++|+++||+.|+.+.|.++++++.+.+ ++.+..+| .++++.+++|.++||+++|++|+ ...+.|..
T Consensus 9 ~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~ 87 (97)
T cd02949 9 YHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVK 87 (97)
T ss_pred HHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCc
Confidence 345668899999999999999999999999988754 36677665 67899999999999999999887 44577877
Q ss_pred chhHHHHHHHh
Q psy160 176 SEEEEVLQWLI 186 (346)
Q Consensus 176 ~~~~~i~~fi~ 186 (346)
..+ ++.+|++
T Consensus 88 ~~~-~~~~~l~ 97 (97)
T cd02949 88 MKS-EYREFIE 97 (97)
T ss_pred cHH-HHHHhhC
Confidence 744 7888763
No 111
>KOG0907|consensus
Probab=99.40 E-value=2.4e-12 Score=97.30 Aligned_cols=79 Identities=19% Similarity=0.317 Sum_probs=65.8
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCC-cceecCCcchhH
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRF-PSIYRGDLSEEE 179 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~-~~~y~g~~~~~~ 179 (346)
++.++|.|||+||++|+.+.|.+.+++.++.+ +.|.++| ..+++++++|+..||+.+|++|+ ...+-|... .
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~-~- 96 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANK-A- 96 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCH-H-
Confidence 47889999999999999999999999999866 7777766 48899999999999999999998 455777655 2
Q ss_pred HHHHHHh
Q psy160 180 EVLQWLI 186 (346)
Q Consensus 180 ~i~~fi~ 186 (346)
.+.+.+.
T Consensus 97 ~l~~~i~ 103 (106)
T KOG0907|consen 97 ELEKKIA 103 (106)
T ss_pred HHHHHHH
Confidence 4555544
No 112
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.39 E-value=2.3e-12 Score=97.42 Aligned_cols=76 Identities=12% Similarity=0.297 Sum_probs=63.9
Q ss_pred HHHHHHHHh--cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCCc
Q psy160 94 RRMLDKLLE--ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFP 168 (346)
Q Consensus 94 ~~~~~~~~~--~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~ 168 (346)
.+.+++.+. ++++++|.|+++||++|+.+.|.++++|+++.+. +.|..+| .++++++|+|...||+++|++|++
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDev~dva~~y~I~amPtfvffkngkh 80 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH 80 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence 356666665 4689999999999999999999999999998653 5566655 789999999999999999999985
Q ss_pred ce
Q psy160 169 SI 170 (346)
Q Consensus 169 ~~ 170 (346)
..
T Consensus 81 ~~ 82 (114)
T cd02986 81 MK 82 (114)
T ss_pred EE
Confidence 54
No 113
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.38 E-value=2.3e-12 Score=103.63 Aligned_cols=95 Identities=16% Similarity=0.280 Sum_probs=71.6
Q ss_pred HHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c---ChhhhhhCCCccccEEEEEe-CCeE
Q psy160 200 VMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q---DPQLAKRYSIKTFPALVYFR-NGNP 273 (346)
Q Consensus 200 ~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~---~~~~~~~~~i~~~Pti~~~~-~g~~ 273 (346)
..+++.+..+++++|.||++||++|+.+.|.+.++++.+.+ .+.|+.+ + ...++++|+|+++|++++|. +|+.
T Consensus 11 ~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~ 89 (142)
T cd02950 11 TPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNE 89 (142)
T ss_pred CCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCE
Confidence 45667777889999999999999999999999999999875 5666665 2 24789999999999999995 7875
Q ss_pred E-EeecCccccc-cchhhhhhhcc
Q psy160 274 L-IFEGENKILK-GTYIGTYISTK 295 (346)
Q Consensus 274 ~-~y~g~~~~~~-~~~~~~~i~~~ 295 (346)
+ .+.|....++ ...+..+++..
T Consensus 90 v~~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 90 EGQSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCC
Confidence 5 4667654322 22344444433
No 114
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.38 E-value=4.9e-12 Score=100.15 Aligned_cols=80 Identities=15% Similarity=0.226 Sum_probs=64.1
Q ss_pred CHHHHHHHHh--cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe--C-ChhhHHhhCCCCcceEE-EEecC
Q psy160 93 NRRMLDKLLE--ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM--A-DPRYARKWGVTKLPAVV-YFRHR 166 (346)
Q Consensus 93 ~~~~~~~~~~--~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~-~~~l~~~~~i~~~Ptl~-~~~~g 166 (346)
+.+++++.+. .+++++|.|||+||++|+.+.|.++++++.+.+. +.++++ | .++++++|+|++.||++ +|++|
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g 88 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDITEVPDFNTMYELYDPCTVMFFFRNK 88 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCCCHHHHHHcCccCCCcEEEEEECC
Confidence 4788888885 4578999999999999999999999999998653 444554 4 78999999999776666 89888
Q ss_pred C-cce-ecC
Q psy160 167 F-PSI-YRG 173 (346)
Q Consensus 167 ~-~~~-y~g 173 (346)
+ ... ..|
T Consensus 89 ~~~vd~~tG 97 (142)
T PLN00410 89 HIMIDLGTG 97 (142)
T ss_pred eEEEEEecc
Confidence 7 433 345
No 115
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.37 E-value=5.5e-12 Score=94.73 Aligned_cols=76 Identities=25% Similarity=0.438 Sum_probs=65.9
Q ss_pred HHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCeEE-EeecCc
Q psy160 205 MVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPL-IFEGEN 280 (346)
Q Consensus 205 ~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~~-~y~g~~ 280 (346)
+.+.+++++|.|+++||++|+.+.|.++++++++.+ ++.++.+ .+++++++++|.++|++++|++|+.+ .+.|..
T Consensus 9 ~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~ 87 (97)
T cd02949 9 YHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVK 87 (97)
T ss_pred HHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCc
Confidence 466788999999999999999999999999999875 6888888 57789999999999999999999754 356665
Q ss_pred c
Q psy160 281 K 281 (346)
Q Consensus 281 ~ 281 (346)
+
T Consensus 88 ~ 88 (97)
T cd02949 88 M 88 (97)
T ss_pred c
Confidence 4
No 116
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.37 E-value=4.1e-12 Score=98.08 Aligned_cols=88 Identities=17% Similarity=0.201 Sum_probs=69.0
Q ss_pred HHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCC---cce
Q psy160 97 LDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRF---PSI 170 (346)
Q Consensus 97 ~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~---~~~ 170 (346)
+.+.+.+...++|.||++||++|+.+.|.+++++..... +.+..+| .+.++.+|+|.+.||+++|++|. ...
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~--i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~ 92 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDK--LKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIR 92 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCc--eEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEE
Confidence 444455566788999999999999999999999987633 5555554 78899999999999999998754 346
Q ss_pred ecCCcchhHHHHHHHhh
Q psy160 171 YRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 171 y~g~~~~~~~i~~fi~~ 187 (346)
|.|..... ++.+|+..
T Consensus 93 ~~G~~~~~-el~~~i~~ 108 (113)
T cd02975 93 YYGLPAGY-EFASLIED 108 (113)
T ss_pred EEecCchH-HHHHHHHH
Confidence 88876644 78888764
No 117
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.35 E-value=7.8e-12 Score=92.27 Aligned_cols=87 Identities=23% Similarity=0.408 Sum_probs=72.0
Q ss_pred HHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCC-ccee
Q psy160 96 MLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRF-PSIY 171 (346)
Q Consensus 96 ~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~-~~~y 171 (346)
+|++.+..+++++++||++||++|..+.+.+.++++. ..++.++.++ ...+++++++.++|++++|++|+ ...+
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~ 79 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRV 79 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEE
Confidence 5677777779999999999999999999999999987 3346666655 57899999999999999999887 4557
Q ss_pred cCCcchhHHHHHHH
Q psy160 172 RGDLSEEEEVLQWL 185 (346)
Q Consensus 172 ~g~~~~~~~i~~fi 185 (346)
.|..+ .+.|.+|+
T Consensus 80 ~g~~~-~~~l~~~i 92 (93)
T cd02947 80 VGADP-KEELEEFL 92 (93)
T ss_pred ecCCC-HHHHHHHh
Confidence 78766 34788776
No 118
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.32 E-value=7.4e-12 Score=104.07 Aligned_cols=82 Identities=15% Similarity=0.230 Sum_probs=70.7
Q ss_pred cCceeecCH-HHHHHHHhcCC---cEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCCh--hhHHhhCCCCcce
Q psy160 86 KNEIEEVNR-RMLDKLLEENE---FVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADP--RYARKWGVTKLPA 159 (346)
Q Consensus 86 ~~~v~~l~~-~~~~~~~~~~~---~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~--~l~~~~~i~~~Pt 159 (346)
.+.+.+++. ++|.+.+.... +++|.||++||++|+.+.|.++++|..+. .+.|++++.. .++.+|+|...||
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~~~l~~~f~v~~vPT 138 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASATGASDEFDTDALPA 138 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccchhhHHhCCCCCCCE
Confidence 468889988 99999886543 89999999999999999999999999875 3788887733 6899999999999
Q ss_pred EEEEecCCcc
Q psy160 160 VVYFRHRFPS 169 (346)
Q Consensus 160 l~~~~~g~~~ 169 (346)
+++|++|+.+
T Consensus 139 lllyk~G~~v 148 (175)
T cd02987 139 LLVYKGGELI 148 (175)
T ss_pred EEEEECCEEE
Confidence 9999999844
No 119
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.32 E-value=1.2e-11 Score=95.39 Aligned_cols=78 Identities=18% Similarity=0.407 Sum_probs=63.6
Q ss_pred HHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCe---EEE
Q psy160 202 LETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGN---PLI 275 (346)
Q Consensus 202 ~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~---~~~ 275 (346)
+.+.+.....++|.|+++||++|+.+.|.+++++..+. .+.+..+ .+++++++|+|++.||+++|++|. .+.
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~--~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~ 92 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSD--KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIR 92 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcC--ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEE
Confidence 44445566678888999999999999999999998863 5777777 678999999999999999999763 346
Q ss_pred eecCcc
Q psy160 276 FEGENK 281 (346)
Q Consensus 276 y~g~~~ 281 (346)
|.|-..
T Consensus 93 ~~G~~~ 98 (113)
T cd02975 93 YYGLPA 98 (113)
T ss_pred EEecCc
Confidence 777554
No 120
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.31 E-value=1.7e-11 Score=103.25 Aligned_cols=86 Identities=22% Similarity=0.371 Sum_probs=70.9
Q ss_pred cCcEEEccHHHHHHH-Hhcc--ceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEcChhhhhhCCCccccEEEE
Q psy160 191 EDRIELITRVMLETM-VEET--QYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVY 267 (346)
Q Consensus 191 ~~~v~~l~~~~~~~~-~~~~--~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~i~~~Pti~~ 267 (346)
-+.+..++.++|... .+.+ .+++|.||++||++|+.|.|.|++||.++. .+.|+++.....+..|++.+.||+++
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad~~~~~~~i~~lPTlli 158 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP--DTKFVKIISTQCIPNYPDKNLPTILV 158 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhHHhHhhCCCCCCCEEEE
Confidence 357778888888864 4433 489999999999999999999999999986 58999995445578999999999999
Q ss_pred EeCCeEEE-eec
Q psy160 268 FRNGNPLI-FEG 278 (346)
Q Consensus 268 ~~~g~~~~-y~g 278 (346)
|++|+.+. +.|
T Consensus 159 yk~G~~v~~ivG 170 (192)
T cd02988 159 YRNGDIVKQFIG 170 (192)
T ss_pred EECCEEEEEEeC
Confidence 99998553 444
No 121
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.30 E-value=2.5e-11 Score=102.20 Aligned_cols=83 Identities=17% Similarity=0.259 Sum_probs=71.1
Q ss_pred ccCceeecCHHHHHHHHhc-C--CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEE
Q psy160 85 IKNEIEEVNRRMLDKLLEE-N--EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVV 161 (346)
Q Consensus 85 ~~~~v~~l~~~~~~~~~~~-~--~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~ 161 (346)
..+.+.+++.++|...+.. + .+++|.||++||++|+.+.|.|+++|..+. .+.|++++....+.+|+|+..||++
T Consensus 80 ~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad~~~~~~~i~~lPTll 157 (192)
T cd02988 80 KFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP--DTKFVKIISTQCIPNYPDKNLPTIL 157 (192)
T ss_pred CCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhHHhHhhCCCCCCCEEE
Confidence 3468999999999876543 3 378999999999999999999999999975 3889999866677899999999999
Q ss_pred EEecCCcc
Q psy160 162 YFRHRFPS 169 (346)
Q Consensus 162 ~~~~g~~~ 169 (346)
+|++|+.+
T Consensus 158 iyk~G~~v 165 (192)
T cd02988 158 VYRNGDIV 165 (192)
T ss_pred EEECCEEE
Confidence 99999843
No 122
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.30 E-value=2.9e-11 Score=91.76 Aligned_cols=90 Identities=17% Similarity=0.276 Sum_probs=73.0
Q ss_pred HHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCC--CcceEEEEec--CCc
Q psy160 96 MLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVT--KLPAVVYFRH--RFP 168 (346)
Q Consensus 96 ~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~--~~Ptl~~~~~--g~~ 168 (346)
++......+.++++.|+++||++|+.+.|.++++|+++++. +.|+.+| ++.+++.+||. ++|+++++++ |..
T Consensus 4 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k 82 (103)
T cd02982 4 TFFNYEESGKPLLVLFYNKDDSESEELRERFKEVAKKFKGK-LLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKK 82 (103)
T ss_pred HHhhhhhcCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccc
Confidence 34443334678999999999999999999999999999754 8888877 56799999999 9999999998 666
Q ss_pred ceecCCc-chhHHHHHHHhh
Q psy160 169 SIYRGDL-SEEEEVLQWLIT 187 (346)
Q Consensus 169 ~~y~g~~-~~~~~i~~fi~~ 187 (346)
+.+.+.. + .++|.+|+.+
T Consensus 83 ~~~~~~~~~-~~~l~~fi~~ 101 (103)
T cd02982 83 YLMPEEELT-AESLEEFVED 101 (103)
T ss_pred cCCCccccC-HHHHHHHHHh
Confidence 6665543 4 4589999875
No 123
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.28 E-value=1.8e-11 Score=87.35 Aligned_cols=73 Identities=14% Similarity=0.253 Sum_probs=59.9
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcCChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTWL 77 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~~i 77 (346)
|.||++||++|+.+.|.+++++++++. .+.++++++.+.+.+|++.+.||+++ +|..+ +.|.....+.+.+++
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~-~~~~~~v~~~~~a~~~~v~~vPti~i--~G~~~-~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGI-DAEFEKVTDMNEILEAGVTATPGVAV--DGELV-IMGKIPSKEEIKEIL 75 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHcCCCcCCEEEE--CCEEE-EEeccCCHHHHHHHh
Confidence 579999999999999999999998742 37888999888899999999999999 77655 778544434666664
No 124
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.26 E-value=4.8e-11 Score=93.23 Aligned_cols=86 Identities=15% Similarity=0.282 Sum_probs=66.4
Q ss_pred EEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEc-C-----------hhhhhhCC---
Q psy160 194 IELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ-D-----------PQLAKRYS--- 258 (346)
Q Consensus 194 v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~-~-----------~~~~~~~~--- 258 (346)
+..++.+++.+.+++++..+|+|+++||++|+.+.|.+++++++.+ ..+..+.++ + .++.++|+
T Consensus 8 ~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~-~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~ 86 (122)
T TIGR01295 8 LEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTK-APIYYIDSENNGSFEMSSLNDLTAFRSRFGIPT 86 (122)
T ss_pred ceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcC-CcEEEEECCCccCcCcccHHHHHHHHHHcCCcc
Confidence 4567888999999999999999999999999999999999999843 245555552 1 13446655
Q ss_pred -CccccEEEEEeCCeEEE-eecCc
Q psy160 259 -IKTFPALVYFRNGNPLI-FEGEN 280 (346)
Q Consensus 259 -i~~~Pti~~~~~g~~~~-y~g~~ 280 (346)
|.+.||+++|++|+.+. ..|..
T Consensus 87 ~i~~~PT~v~~k~Gk~v~~~~G~~ 110 (122)
T TIGR01295 87 SFMGTPTFVHITDGKQVSVRCGSS 110 (122)
T ss_pred cCCCCCEEEEEeCCeEEEEEeCCC
Confidence 55699999999998665 44643
No 125
>KOG0908|consensus
Probab=99.25 E-value=3e-11 Score=101.65 Aligned_cols=84 Identities=18% Similarity=0.365 Sum_probs=69.2
Q ss_pred EEEccHHHHHHHHh--ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEE
Q psy160 194 IELITRVMLETMVE--ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYF 268 (346)
Q Consensus 194 v~~l~~~~~~~~~~--~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~ 268 (346)
+..-+..+|+.-+. ..+.++|.|+|.||+||+.+.|.|+.++.+|. +..|+++ .....+..+||...||+++|
T Consensus 4 i~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp--~aVFlkVdVd~c~~taa~~gV~amPTFiff 81 (288)
T KOG0908|consen 4 IVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP--GAVFLKVDVDECRGTAATNGVNAMPTFIFF 81 (288)
T ss_pred EEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc--ccEEEEEeHHHhhchhhhcCcccCceEEEE
Confidence 33445677876443 46799999999999999999999999999997 5788888 56778889999999999999
Q ss_pred eCCeEEE-eecC
Q psy160 269 RNGNPLI-FEGE 279 (346)
Q Consensus 269 ~~g~~~~-y~g~ 279 (346)
++|..+. +.|.
T Consensus 82 ~ng~kid~~qGA 93 (288)
T KOG0908|consen 82 RNGVKIDQIQGA 93 (288)
T ss_pred ecCeEeeeecCC
Confidence 9997654 5564
No 126
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.25 E-value=6e-11 Score=87.45 Aligned_cols=79 Identities=25% Similarity=0.581 Sum_probs=66.6
Q ss_pred HHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCeE-EEe
Q psy160 201 MLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP-LIF 276 (346)
Q Consensus 201 ~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~-~~y 276 (346)
++++.++.+++++|.||++||++|..+.+.+.++++. .+ ++.++.+ .+..+++.|++.++|++++|++|+. ..+
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~-~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~ 79 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YP-KVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRV 79 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CC-CceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEE
Confidence 4667777779999999999999999999999999988 33 6888887 4688999999999999999999974 346
Q ss_pred ecCcc
Q psy160 277 EGENK 281 (346)
Q Consensus 277 ~g~~~ 281 (346)
.|..+
T Consensus 80 ~g~~~ 84 (93)
T cd02947 80 VGADP 84 (93)
T ss_pred ecCCC
Confidence 66554
No 127
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.23 E-value=5.2e-11 Score=91.89 Aligned_cols=76 Identities=8% Similarity=0.123 Sum_probs=64.0
Q ss_pred ccHHHHHHHHhc--cceEEEEEEc-------CCChhhHHHHHHHHHHHhhcCcCceEEEEE--c--------ChhhhhhC
Q psy160 197 ITRVMLETMVEE--TQYLAVYFYK-------LNCNICDQILEGLEKVDDECDIYGIHMVKI--Q--------DPQLAKRY 257 (346)
Q Consensus 197 l~~~~~~~~~~~--~~~~lv~F~~-------~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~--------~~~~~~~~ 257 (346)
-+.++|.+.+.+ +++++|.||| +||++|+.+.|.+++++.++.+ ++.|+++ + +.++.+.+
T Consensus 7 ~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~~w~d~~~~~~~~~ 85 (119)
T cd02952 7 RGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRPYWRDPNNPFRTDP 85 (119)
T ss_pred cCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCcccccCcchhhHhcc
Confidence 355777777665 5799999999 9999999999999999999885 6778887 2 35889999
Q ss_pred CCc-cccEEEEEeCCeE
Q psy160 258 SIK-TFPALVYFRNGNP 273 (346)
Q Consensus 258 ~i~-~~Pti~~~~~g~~ 273 (346)
+|. ++||+++|++|+.
T Consensus 86 ~I~~~iPT~~~~~~~~~ 102 (119)
T cd02952 86 KLTTGVPTLLRWKTPQR 102 (119)
T ss_pred CcccCCCEEEEEcCCce
Confidence 998 9999999987753
No 128
>KOG0908|consensus
Probab=99.23 E-value=6.2e-11 Score=99.80 Aligned_cols=97 Identities=14% Similarity=0.192 Sum_probs=78.0
Q ss_pred eeec-CHHHHHHHHhcC--CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 89 IEEV-NRRMLDKLLEEN--EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 89 v~~l-~~~~~~~~~~~~--~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
|+.+ ++.+|..-+... +.++|.|+|.||++|+.+.|.|+.++.++.+ ..|.++| .+..+..+||+..||+++
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~--aVFlkVdVd~c~~taa~~gV~amPTFif 80 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG--AVFLKVDVDECRGTAATNGVNAMPTFIF 80 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc--cEEEEEeHHHhhchhhhcCcccCceEEE
Confidence 3444 477888877654 5899999999999999999999999999854 6677776 678899999999999999
Q ss_pred EecCCcc-eecCCcchhHHHHHHHhhcc
Q psy160 163 FRHRFPS-IYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 163 ~~~g~~~-~y~g~~~~~~~i~~fi~~~~ 189 (346)
|++|..+ .++|.-. ..|.+.+.++.
T Consensus 81 f~ng~kid~~qGAd~--~gLe~kv~~~~ 106 (288)
T KOG0908|consen 81 FRNGVKIDQIQGADA--SGLEEKVAKYA 106 (288)
T ss_pred EecCeEeeeecCCCH--HHHHHHHHHHh
Confidence 9999854 4888643 35666666654
No 129
>KOG1731|consensus
Probab=99.22 E-value=3.7e-11 Score=112.49 Aligned_cols=160 Identities=11% Similarity=0.220 Sum_probs=92.2
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhccc-C-CeEEEcC-----ChHHHHhcCCCCCCeEEEEeCCce-----eeecCCCC
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQY-G-IDMVKIS-----DTEAAAKYNIINLPSLVYFRKQVP-----LLYDGDLF 68 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~-~-i~~~~~~-----~~~~c~~~~i~~~Ptl~~f~~~~~-----~~y~G~~~ 68 (346)
|+||++|||||++|+|.|+++|+++..- . +.++.+| +.++|.+++|++||++.+|..+.. ..+.|...
T Consensus 62 VEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~~~~~~~~~G~~~~~~~~ 141 (606)
T KOG1731|consen 62 VEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFPPDSQNKTDGSDVSGPVI 141 (606)
T ss_pred HHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeecCCccccCcCCCcccCCcc
Confidence 6899999999999999999999999432 2 2222332 689999999999999999986421 23455433
Q ss_pred CHHHHHHHHhc--------cCCcc--ccCceeecC-HHHHHHHHhcC-CcEEEEE-ECCCChhHHHHHHHHHHHHhhc--
Q psy160 69 DEEKILTWLTS--------QDVFE--IKNEIEEVN-RRMLDKLLEEN-EFVTVFF-YETDHKDSVKVLERLEKIDGET-- 133 (346)
Q Consensus 69 ~~~~i~~~i~~--------~~~p~--~~~~v~~l~-~~~~~~~~~~~-~~~lv~F-~~~~C~~c~~~~~~~~~~a~~~-- 133 (346)
. .++.+.+.. +..|. .=..+.+.+ .+.+.+-+.+. ..+-+.| ..+. .-.|+.+-..+
T Consensus 142 ~-~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~yvAiv~e~~~s-------~lg~~~~l~~l~~ 213 (606)
T KOG1731|consen 142 P-SEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANYVAIVFETEPS-------DLGWANLLNDLPS 213 (606)
T ss_pred h-hhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccccceeEEEEecCCc-------ccHHHHHHhhccC
Confidence 3 244443322 11210 001222222 22233322222 3444445 3322 12344444444
Q ss_pred cCCCcEEEEeC-ChhhHHhhCCCCcceEEEEecCCcc
Q psy160 134 DNMDITFVKMA-DPRYARKWGVTKLPAVVYFRHRFPS 169 (346)
Q Consensus 134 ~~~~i~~~~~~-~~~l~~~~~i~~~Ptl~~~~~g~~~ 169 (346)
+..++..+... ...+.. +++...|+..+|++|+..
T Consensus 214 ~~v~vr~~~d~q~~~~~~-l~~~~~~~~llfrnG~~q 249 (606)
T KOG1731|consen 214 KQVGVRARLDTQNFPLFG-LKPDNFPLALLFRNGEQQ 249 (606)
T ss_pred CCcceEEEecchhccccc-cCCCCchhhhhhcCCccc
Confidence 33334444433 223444 899999999999999843
No 130
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.22 E-value=1e-10 Score=92.17 Aligned_cols=92 Identities=16% Similarity=0.198 Sum_probs=68.6
Q ss_pred HHHHHHHhcC-CcEEEEEECCCChhHHHHHHHHH---HHHhhccCCCcEEEEeC--C--------------hhhHHhhCC
Q psy160 95 RMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLE---KIDGETDNMDITFVKMA--D--------------PRYARKWGV 154 (346)
Q Consensus 95 ~~~~~~~~~~-~~~lv~F~~~~C~~c~~~~~~~~---~~a~~~~~~~i~~~~~~--~--------------~~l~~~~~i 154 (346)
+.+++..+++ ++++|.||++||++|+++.|.+. .+.+.+.+ ++.++.++ . ..++.+|+|
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v 82 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDGDKEVTDFDGEALSEKELARKYRV 82 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence 5567778888 99999999999999999999875 44444432 35555443 2 578999999
Q ss_pred CCcceEEEEecC--C-cceecCCcchhHHHHHHHhhc
Q psy160 155 TKLPAVVYFRHR--F-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 155 ~~~Ptl~~~~~g--~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
+++||+++|.++ + ...+.|..+.+ .+.++++..
T Consensus 83 ~~~Pt~~~~~~~gg~~~~~~~G~~~~~-~~~~~l~~~ 118 (125)
T cd02951 83 RFTPTVIFLDPEGGKEIARLPGYLPPD-EFLAYLEYV 118 (125)
T ss_pred ccccEEEEEcCCCCceeEEecCCCCHH-HHHHHHHHH
Confidence 999999999874 5 34578877644 676666553
No 131
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.21 E-value=7.9e-11 Score=84.00 Aligned_cols=73 Identities=23% Similarity=0.241 Sum_probs=60.9
Q ss_pred EEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHHHH
Q psy160 109 VFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 109 v~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi 185 (346)
|.||++||++|+.+.|.++++++++.. .+.++++++.+.+.+||+.+.||+++ +|+.. +.|.....+.+.+++
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~-~~~~~~v~~~~~a~~~~v~~vPti~i--~G~~~-~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGI-DAEFEKVTDMNEILEAGVTATPGVAV--DGELV-IMGKIPSKEEIKEIL 75 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHcCCCcCCEEEE--CCEEE-EEeccCCHHHHHHHh
Confidence 789999999999999999999998743 48899999888899999999999999 77654 778654444677665
No 132
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.18 E-value=1e-10 Score=88.73 Aligned_cols=70 Identities=16% Similarity=0.289 Sum_probs=61.0
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCc--cccEEEEEeC--CeEEEeecC
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIK--TFPALVYFRN--GNPLIFEGE 279 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~--~~Pti~~~~~--g~~~~y~g~ 279 (346)
++++++.|+++||++|+.+.|.++++|+++++ .+.|+.+ .++.+++.|++. ++|+++++++ |+...+.++
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~-~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~ 88 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKG-KLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEE 88 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC-eEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCcc
Confidence 57899999999999999999999999999997 7999998 556799999999 9999999998 654444443
No 133
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.17 E-value=1.4e-10 Score=91.35 Aligned_cols=81 Identities=19% Similarity=0.374 Sum_probs=63.0
Q ss_pred HHHHHHHhcc-ceEEEEEEcCCChhhHHHHHHHH---HHHhhcCcCceEEEEE--c--------------ChhhhhhCCC
Q psy160 200 VMLETMVEET-QYLAVYFYKLNCNICDQILEGLE---KVDDECDIYGIHMVKI--Q--------------DPQLAKRYSI 259 (346)
Q Consensus 200 ~~~~~~~~~~-~~~lv~F~~~~c~~c~~~~~~~~---~la~~~~~~~i~~~~i--~--------------~~~~~~~~~i 259 (346)
+.+++.++++ ++++|.||++||++|+.+.+.+. .+.+.+++ ++.++.+ + ..+++.+|+|
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v 82 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDGDKEVTDFDGEALSEKELARKYRV 82 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence 4566778888 99999999999999999999885 55555554 5667666 2 2578999999
Q ss_pred ccccEEEEEeC--CeEE-EeecCcc
Q psy160 260 KTFPALVYFRN--GNPL-IFEGENK 281 (346)
Q Consensus 260 ~~~Pti~~~~~--g~~~-~y~g~~~ 281 (346)
+++||+++|.+ |+.+ ++.|..+
T Consensus 83 ~~~Pt~~~~~~~gg~~~~~~~G~~~ 107 (125)
T cd02951 83 RFTPTVIFLDPEGGKEIARLPGYLP 107 (125)
T ss_pred ccccEEEEEcCCCCceeEEecCCCC
Confidence 99999999986 4644 4667654
No 134
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.15 E-value=2.7e-10 Score=82.54 Aligned_cols=76 Identities=16% Similarity=0.265 Sum_probs=61.6
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHH
Q psy160 107 VTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQ 183 (346)
Q Consensus 107 ~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~ 183 (346)
.+..|+++||++|+.+.|.++++++.++. .+.+..+| ++++++++|+.++||+++ +|+ ..+.|..+.+ ++.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~-~~~~G~~~~~-~l~~ 76 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD-VEFIGAPTKE-ELVE 76 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE-EEEecCCCHH-HHHH
Confidence 46799999999999999999999988753 26666665 778999999999999986 665 4778877644 7888
Q ss_pred HHhh
Q psy160 184 WLIT 187 (346)
Q Consensus 184 fi~~ 187 (346)
++..
T Consensus 77 ~l~~ 80 (82)
T TIGR00411 77 AIKK 80 (82)
T ss_pred HHHh
Confidence 7764
No 135
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.13 E-value=2.5e-10 Score=88.05 Aligned_cols=74 Identities=16% Similarity=0.233 Sum_probs=61.7
Q ss_pred CHHHHHHHHhc--CCcEEEEEEC-------CCChhHHHHHHHHHHHHhhccCCCcEEEEeC----------ChhhHHhhC
Q psy160 93 NRRMLDKLLEE--NEFVTVFFYE-------TDHKDSVKVLERLEKIDGETDNMDITFVKMA----------DPRYARKWG 153 (346)
Q Consensus 93 ~~~~~~~~~~~--~~~~lv~F~~-------~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----------~~~l~~~~~ 153 (346)
+.++|.+.+.+ +++++|.||| +||++|+.+.|.+++++..+.. ++.|+.+| +..++.+++
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~~w~d~~~~~~~~~~ 86 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRPYWRDPNNPFRTDPK 86 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCcccccCcchhhHhccC
Confidence 46778888876 5789999999 9999999999999999998852 26666654 258999999
Q ss_pred CC-CcceEEEEecCC
Q psy160 154 VT-KLPAVVYFRHRF 167 (346)
Q Consensus 154 i~-~~Ptl~~~~~g~ 167 (346)
|. +.||+++|++|.
T Consensus 87 I~~~iPT~~~~~~~~ 101 (119)
T cd02952 87 LTTGVPTLLRWKTPQ 101 (119)
T ss_pred cccCCCEEEEEcCCc
Confidence 98 999999997765
No 136
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.11 E-value=2e-09 Score=105.95 Aligned_cols=177 Identities=14% Similarity=0.219 Sum_probs=127.9
Q ss_pred eecCCCChhhHHHHHHHHHHHhhhcccCCeEEEc-CChHHHHhcCCCCCCeEEEEe-CCc--eeeecCCCCCHHHHHHHH
Q psy160 2 YINDENCPECDDILEELEHIDGDADQYGIDMVKI-SDTEAAAKYNIINLPSLVYFR-KQV--PLLYDGDLFDEEKILTWL 77 (346)
Q Consensus 2 ~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~-~~~~~c~~~~i~~~Ptl~~f~-~~~--~~~y~G~~~~~~~i~~~i 77 (346)
.|+.+.|..|.++...++++++.-++..+.+... ++.++..+|+|...|++.+++ ++. -+.|.|-+..+ ++..|+
T Consensus 372 ~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G~-Ef~s~i 450 (555)
T TIGR03143 372 LFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSGH-ELNSFI 450 (555)
T ss_pred EEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCccH-hHHHHH
Confidence 5778899999999888888887655433333333 367899999999999999985 443 37899988775 766666
Q ss_pred hccCCccccCceeecCHHHHHHHHhcCCcE-EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-ChhhHHhhCCC
Q psy160 78 TSQDVFEIKNEIEEVNRRMLDKLLEENEFV-TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYARKWGVT 155 (346)
Q Consensus 78 ~~~~~p~~~~~v~~l~~~~~~~~~~~~~~~-lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~l~~~~~i~ 155 (346)
..-... +..-..|+++..+.+-.=++++ +-.|.+++|++|.+....+.+++....+....++.+. .++++++|+|.
T Consensus 451 ~~i~~~--~~~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~ 528 (555)
T TIGR03143 451 LALYNA--AGPGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIM 528 (555)
T ss_pred HHHHHh--cCCCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCce
Confidence 542221 1123356676666665444554 6667899999999999999999987544444455543 88999999999
Q ss_pred CcceEEEEecCCcceecCCcchhHHHHHHH
Q psy160 156 KLPAVVYFRHRFPSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 156 ~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi 185 (346)
+.|++++ ||+ ..+.|..+ .+++++++
T Consensus 529 ~vP~~~i--~~~-~~~~G~~~-~~~~~~~~ 554 (555)
T TIGR03143 529 SVPAIVV--DDQ-QVYFGKKT-IEEMLELI 554 (555)
T ss_pred ecCEEEE--CCE-EEEeeCCC-HHHHHHhh
Confidence 9999988 454 45778875 55888876
No 137
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.08 E-value=7.2e-10 Score=80.26 Aligned_cols=65 Identities=29% Similarity=0.475 Sum_probs=55.7
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCeEEEeecCcc
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPLIFEGENK 281 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~~~y~g~~~ 281 (346)
+..|+++||++|+.+.+.++++++.++. .+.+..+ .++++++++++.++|++++ +|+ ..+.|..+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~-~~~~G~~~ 70 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD-VEFIGAPT 70 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE-EEEecCCC
Confidence 5679999999999999999999999875 6888887 6788999999999999986 676 46778764
No 138
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.06 E-value=5.8e-10 Score=86.51 Aligned_cols=74 Identities=12% Similarity=0.316 Sum_probs=54.6
Q ss_pred HHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc-CceEEEEE-c-ChhhhhhCCCcc--ccEEEEEe-CCeE
Q psy160 200 VMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDI-YGIHMVKI-Q-DPQLAKRYSIKT--FPALVYFR-NGNP 273 (346)
Q Consensus 200 ~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~-~~i~~~~i-~-~~~~~~~~~i~~--~Pti~~~~-~g~~ 273 (346)
+.+....+++++++|.|||+||++|+.+.|.+.+.+..... .++..+.+ . .......|++.+ +||+++|. +|+.
T Consensus 10 ~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~ 89 (117)
T cd02959 10 DGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDV 89 (117)
T ss_pred HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCC
Confidence 33444566789999999999999999999999998765432 13444455 2 224567888876 99999995 7764
No 139
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.01 E-value=2.1e-09 Score=83.36 Aligned_cols=75 Identities=4% Similarity=0.125 Sum_probs=56.4
Q ss_pred HHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhcc-CCCcEEEEeC--ChhhHHhhCCCC--cceEEEEe-cCC
Q psy160 94 RRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETD-NMDITFVKMA--DPRYARKWGVTK--LPAVVYFR-HRF 167 (346)
Q Consensus 94 ~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~-~~~i~~~~~~--~~~l~~~~~i~~--~Ptl~~~~-~g~ 167 (346)
.+.++....++++++|.||++||++|+.+.|.+.+.+.... ..++..++++ ......+|++.+ +||+++|. +|+
T Consensus 9 ~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk 88 (117)
T cd02959 9 EDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGD 88 (117)
T ss_pred HHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCC
Confidence 34455556677899999999999999999999999776542 2245555665 234567899986 99999996 676
Q ss_pred c
Q psy160 168 P 168 (346)
Q Consensus 168 ~ 168 (346)
.
T Consensus 89 ~ 89 (117)
T cd02959 89 V 89 (117)
T ss_pred C
Confidence 3
No 140
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.95 E-value=2.4e-08 Score=98.36 Aligned_cols=171 Identities=16% Similarity=0.298 Sum_probs=124.0
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEe-cCC--cceecCCcchh
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR-HRF--PSIYRGDLSEE 178 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~-~g~--~~~y~g~~~~~ 178 (346)
+..++.|+.+.|..|.++...+++++..-.+ |.+...| +.+++++|++...|++.+.. +|+ .++|.|-..-.
T Consensus 367 ~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~--i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G~ 444 (555)
T TIGR03143 367 PVTLLLFLDGSNEKSAELQSFLGEFASLSEK--LNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSGH 444 (555)
T ss_pred CEEEEEEECCCchhhHHHHHHHHHHHhcCCc--EEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCccH
Confidence 4468889999999999888888888854333 5544433 67899999999999999995 454 47898876644
Q ss_pred HHHHHHHhhccccC-cEEEccHHHHHHHHhccceEEE-EEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-cChhhhh
Q psy160 179 EEVLQWLITQKTED-RIELITRVMLETMVEETQYLAV-YFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQLAK 255 (346)
Q Consensus 179 ~~i~~fi~~~~~~~-~v~~l~~~~~~~~~~~~~~~lv-~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~~~~ 255 (346)
++-.|+.....-+ .-..++.+..+.+.+=++++-| .|.+++|++|......+.+++....+....+..+ ..+++++
T Consensus 445 -Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~ 523 (555)
T TIGR03143 445 -ELNSFILALYNAAGPGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKD 523 (555)
T ss_pred -hHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHH
Confidence 6777776543211 2235677766666554556544 4689999999999999999998865334455555 7889999
Q ss_pred hCCCccccEEEEEeCCeEEEeecCcc
Q psy160 256 RYSIKTFPALVYFRNGNPLIFEGENK 281 (346)
Q Consensus 256 ~~~i~~~Pti~~~~~g~~~~y~g~~~ 281 (346)
+|+|.+.|++++ +|+ +.+.|..+
T Consensus 524 ~~~v~~vP~~~i--~~~-~~~~G~~~ 546 (555)
T TIGR03143 524 EYGIMSVPAIVV--DDQ-QVYFGKKT 546 (555)
T ss_pred hCCceecCEEEE--CCE-EEEeeCCC
Confidence 999999999977 555 34667654
No 141
>PHA02125 thioredoxin-like protein
Probab=98.92 E-value=5.3e-09 Score=74.39 Aligned_cols=56 Identities=27% Similarity=0.476 Sum_probs=43.3
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC---ChHHHHhcCCCCCCeEEEEeCCcee-eecCC
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKIS---DTEAAAKYNIINLPSLVYFRKQVPL-LYDGD 66 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~~~~-~y~G~ 66 (346)
|+||++||++|+.+.|.|++++ +.++++| +.+++.+|+|.++||++ +|..+ .+.|.
T Consensus 3 v~f~a~wC~~Ck~~~~~l~~~~-------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~ 62 (75)
T PHA02125 3 YLFGAEWCANCKMVKPMLANVE-------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGV 62 (75)
T ss_pred EEEECCCCHhHHHHHHHHHHHh-------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCC
Confidence 5899999999999999998663 2345554 57999999999999988 45433 45674
No 142
>PHA02125 thioredoxin-like protein
Probab=98.91 E-value=7.7e-09 Score=73.54 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=45.2
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCCc-ceecCC
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFP-SIYRGD 174 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~-~~y~g~ 174 (346)
+++||++||++|+.+.|.+++++ +.++++| ..+++++|+|.++||++ +|+. -.+.|.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~ 62 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGV 62 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCC
Confidence 78999999999999999997664 3355555 67899999999999998 4443 356674
No 143
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.90 E-value=4.6e-09 Score=80.88 Aligned_cols=81 Identities=22% Similarity=0.300 Sum_probs=54.5
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHH---HHhhccCCCcEEEEe--CC---------------------hhhHHhhCCCC
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEK---IDGETDNMDITFVKM--AD---------------------PRYARKWGVTK 156 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~---~a~~~~~~~i~~~~~--~~---------------------~~l~~~~~i~~ 156 (346)
++++.+++|++|||++|+++.+++.. +...++. ++.++.+ +. ..+++++||++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 45789999999999999999999885 4444432 2444443 22 34889999999
Q ss_pred cceEEEEe-cCC-cceecCCcchhHHHHHHH
Q psy160 157 LPAVVYFR-HRF-PSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 157 ~Ptl~~~~-~g~-~~~y~g~~~~~~~i~~fi 185 (346)
+||++++. +|+ ...+.|..+.+ +|.+++
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~-~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPE-ELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HH-HHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHH-HHHhhC
Confidence 99999996 577 44588988854 777664
No 144
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.86 E-value=1.4e-08 Score=99.77 Aligned_cols=93 Identities=13% Similarity=0.178 Sum_probs=71.3
Q ss_pred CHHHHHHHHh----cCCcEEEEEECCCChhHHHHHHHH---HHHHhhccCCCcEEEEeC-------ChhhHHhhCCCCcc
Q psy160 93 NRRMLDKLLE----ENEFVTVFFYETDHKDSVKVLERL---EKIDGETDNMDITFVKMA-------DPRYARKWGVTKLP 158 (346)
Q Consensus 93 ~~~~~~~~~~----~~~~~lv~F~~~~C~~c~~~~~~~---~~~a~~~~~~~i~~~~~~-------~~~l~~~~~i~~~P 158 (346)
+.+++++.++ ++++++|.||++||++|+.+.+.. .++.+.+++ +.++++| ..+++++|++.++|
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~--~~~v~vDvt~~~~~~~~l~~~~~v~g~P 536 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD--TVLLQADVTANNAEDVALLKHYNVLGLP 536 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC--CEEEEEECCCCChhhHHHHHHcCCCCCC
Confidence 4677777664 357999999999999999998874 566666643 5666554 35789999999999
Q ss_pred eEEEEe-cCCc---ceecCCcchhHHHHHHHhhc
Q psy160 159 AVVYFR-HRFP---SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 159 tl~~~~-~g~~---~~y~g~~~~~~~i~~fi~~~ 188 (346)
|+++|. +|+. .++.|..+.+ ++.+++++.
T Consensus 537 t~~~~~~~G~~i~~~r~~G~~~~~-~f~~~L~~~ 569 (571)
T PRK00293 537 TILFFDAQGQEIPDARVTGFMDAA-AFAAHLRQL 569 (571)
T ss_pred EEEEECCCCCCcccccccCCCCHH-HHHHHHHHh
Confidence 999997 6765 4678888744 888888764
No 145
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.82 E-value=2.5e-08 Score=77.79 Aligned_cols=76 Identities=16% Similarity=0.267 Sum_probs=56.8
Q ss_pred cHHHHHHHHhccceEEEEEEcCCChhhHHHHHH-HH--HHHhhcCcCceEEEEE---cChhhhh--------hCCCcccc
Q psy160 198 TRVMLETMVEETQYLAVYFYKLNCNICDQILEG-LE--KVDDECDIYGIHMVKI---QDPQLAK--------RYSIKTFP 263 (346)
Q Consensus 198 ~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~-~~--~la~~~~~~~i~~~~i---~~~~~~~--------~~~i~~~P 263 (346)
+.+.+++..+++++++|.|+++||++|+.|.+. +. ++++.+.. ++.++++ +.+++++ .|++.++|
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~P 82 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDREERPDVDKIYMNAAQAMTGQGGWP 82 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCC
Confidence 456777788899999999999999999999763 33 55665543 5666676 4445544 36899999
Q ss_pred EEEEEe-CCeEE
Q psy160 264 ALVYFR-NGNPL 274 (346)
Q Consensus 264 ti~~~~-~g~~~ 274 (346)
+++++. +|+++
T Consensus 83 t~vfl~~~G~~~ 94 (124)
T cd02955 83 LNVFLTPDLKPF 94 (124)
T ss_pred EEEEECCCCCEE
Confidence 999995 56654
No 146
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.79 E-value=3.6e-08 Score=68.40 Aligned_cols=61 Identities=26% Similarity=0.498 Sum_probs=48.6
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCeEEEeec
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPLIFEG 278 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~~~y~g 278 (346)
++.|+++||++|+.+.+.+++++.... ++.+..+ +++++++++++.++|++++ +|+ ..|.|
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~-~~~~g 66 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP--NISAEMIDAAEFPDLADEYGVMSVPAIVI--NGK-VEFVG 66 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEcccCHhHHHHcCCcccCEEEE--CCE-EEEec
Confidence 577999999999999999999987643 5666666 5678999999999999865 454 44544
No 147
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.79 E-value=4.6e-08 Score=76.30 Aligned_cols=77 Identities=12% Similarity=0.116 Sum_probs=56.0
Q ss_pred cCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHH-H--HHHHhhccCCCcEEEEeC---ChhhHH--------hhCCCCc
Q psy160 92 VNRRMLDKLLEENEFVTVFFYETDHKDSVKVLER-L--EKIDGETDNMDITFVKMA---DPRYAR--------KWGVTKL 157 (346)
Q Consensus 92 l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~-~--~~~a~~~~~~~i~~~~~~---~~~l~~--------~~~i~~~ 157 (346)
-+++.+....+++++++|.|+++||+.|+.|.+. | .++++.+.. ++.++.+| .+++++ .||+.++
T Consensus 3 ~~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~ 81 (124)
T cd02955 3 WGEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDREERPDVDKIYMNAAQAMTGQGGW 81 (124)
T ss_pred CCHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCC
Confidence 3567788888889999999999999999999863 3 234444432 36666665 444544 3589999
Q ss_pred ceEEEEec-CCcc
Q psy160 158 PAVVYFRH-RFPS 169 (346)
Q Consensus 158 Ptl~~~~~-g~~~ 169 (346)
||++++.. |+++
T Consensus 82 Pt~vfl~~~G~~~ 94 (124)
T cd02955 82 PLNVFLTPDLKPF 94 (124)
T ss_pred CEEEEECCCCCEE
Confidence 99999975 6643
No 148
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.78 E-value=1.8e-08 Score=69.94 Aligned_cols=54 Identities=20% Similarity=0.282 Sum_probs=44.3
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 107 VTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 107 ~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
-++.|+++||++|+.+.+.+++++....+ +.+..+| ++++++++|+.+.||+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~--i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPN--ISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCc--eEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 36899999999999999999999876433 5555444 678999999999999876
No 149
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.75 E-value=2.5e-08 Score=95.54 Aligned_cols=86 Identities=13% Similarity=0.188 Sum_probs=66.5
Q ss_pred hcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe------------------------------C-ChhhHH
Q psy160 102 EENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM------------------------------A-DPRYAR 150 (346)
Q Consensus 102 ~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~------------------------------~-~~~l~~ 150 (346)
.++++++|.|||+||++|++.+|.+++++++++..++.++.+ | ...+++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak 133 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ 133 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence 366899999999999999999999999999875333333211 1 456889
Q ss_pred hhCCCCcceEEEE-ecCCc-ceecCCcchhHHHHHHHhhc
Q psy160 151 KWGVTKLPAVVYF-RHRFP-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 151 ~~~i~~~Ptl~~~-~~g~~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
.|+|.++||++++ ++|+. ..+.|....+ +|.++++..
T Consensus 134 ~fgV~giPTt~IIDkdGkIV~~~~G~~~~e-eL~a~Ie~~ 172 (521)
T PRK14018 134 SLNISVYPSWAIIGKDGDVQRIVKGSISEA-QALALIRNP 172 (521)
T ss_pred HcCCCCcCeEEEEcCCCeEEEEEeCCCCHH-HHHHHHHHh
Confidence 9999999999766 56774 4578988744 899988843
No 150
>KOG0913|consensus
Probab=98.74 E-value=3.3e-09 Score=88.85 Aligned_cols=117 Identities=14% Similarity=0.272 Sum_probs=95.2
Q ss_pred cEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEe
Q psy160 193 RIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~ 269 (346)
.+..++.+|+.+++.. .|++.|++|||+.|+...+.|+..|.--.+..+.++.+ .++.+..+|-++..|||.-.+
T Consensus 25 ~~~~~~eenw~~~l~g--ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvk 102 (248)
T KOG0913|consen 25 KLTRIDEENWKELLTG--EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVK 102 (248)
T ss_pred eeEEecccchhhhhch--HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEee
Confidence 5667889999988764 58999999999999999999999998877667888877 799999999999999999999
Q ss_pred CCeEEEeecCccccccchhhhhhhccCCCCCCcccCCCCCCccch
Q psy160 270 NGNPLIFEGENKILKGTYIGTYISTKAFSLIPFCFSEKHPGAFQT 314 (346)
Q Consensus 270 ~g~~~~y~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 314 (346)
+|.+-+|.|.|+..+ +..|+.......++-+....++..-.+
T Consensus 103 DGeFrrysgaRdk~d---fisf~~~r~w~~i~p~p~w~~p~S~~~ 144 (248)
T KOG0913|consen 103 DGEFRRYSGARDKND---FISFEEHREWQSIDPVPEWEKPDSTEM 144 (248)
T ss_pred ccccccccCcccchh---HHHHHHhhhhhccCCcchhcCCCchHH
Confidence 999999999997544 555666666666666666655554433
No 151
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.74 E-value=5.3e-08 Score=86.70 Aligned_cols=85 Identities=15% Similarity=0.210 Sum_probs=65.5
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCC------------hhhHHhhCCCCcceEEEEec-CCcc-
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD------------PRYARKWGVTKLPAVVYFRH-RFPS- 169 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~------------~~l~~~~~i~~~Ptl~~~~~-g~~~- 169 (346)
+++.+|.||++||++|+.+.|.+.++++++. ..+..+.+|. ..+++++||.++||++++.+ |..+
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence 4789999999999999999999999999863 3355555542 46889999999999999986 4432
Q ss_pred -eecCCcchhHHHHHHHhhccc
Q psy160 170 -IYRGDLSEEEEVLQWLITQKT 190 (346)
Q Consensus 170 -~y~g~~~~~~~i~~fi~~~~~ 190 (346)
...|..+ .++|.+.+.....
T Consensus 245 ~v~~G~~s-~~eL~~~i~~~a~ 265 (271)
T TIGR02740 245 PIGFGVMS-ADELVDRILLAAH 265 (271)
T ss_pred EEEeCCCC-HHHHHHHHHHHhc
Confidence 2457776 4478888766543
No 152
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.73 E-value=3.1e-08 Score=97.35 Aligned_cols=82 Identities=17% Similarity=0.325 Sum_probs=62.8
Q ss_pred cHHHHHHHHh----ccceEEEEEEcCCChhhHHHHHHH---HHHHhhcCcCceEEEEE--c-----ChhhhhhCCCcccc
Q psy160 198 TRVMLETMVE----ETQYLAVYFYKLNCNICDQILEGL---EKVDDECDIYGIHMVKI--Q-----DPQLAKRYSIKTFP 263 (346)
Q Consensus 198 ~~~~~~~~~~----~~~~~lv~F~~~~c~~c~~~~~~~---~~la~~~~~~~i~~~~i--~-----~~~~~~~~~i~~~P 263 (346)
+.+++++.++ ++++++|+||++||++|+.+.+.. .++.+.++ ++.++++ + +.+++++|++.++|
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~~~~~~l~~~~~v~g~P 536 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANNAEDVALLKHYNVLGLP 536 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCChhhHHHHHHcCCCCCC
Confidence 5577777543 368999999999999999998875 56767765 4666666 1 35789999999999
Q ss_pred EEEEEe-CCeE---EEeecCcc
Q psy160 264 ALVYFR-NGNP---LIFEGENK 281 (346)
Q Consensus 264 ti~~~~-~g~~---~~y~g~~~ 281 (346)
++++|+ +|+. .++.|..+
T Consensus 537 t~~~~~~~G~~i~~~r~~G~~~ 558 (571)
T PRK00293 537 TILFFDAQGQEIPDARVTGFMD 558 (571)
T ss_pred EEEEECCCCCCcccccccCCCC
Confidence 999996 7775 35667665
No 153
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.73 E-value=4.6e-08 Score=78.43 Aligned_cols=69 Identities=17% Similarity=0.336 Sum_probs=51.6
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc-------CceEEEEE--------------------------c--Chh
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDI-------YGIHMVKI--------------------------Q--DPQ 252 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~-------~~i~~~~i--------------------------~--~~~ 252 (346)
.+++++|.|||+||++|+...|.+.++.+.+++ .++.++.| . ...
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 458999999999999999999999988765532 13555554 0 124
Q ss_pred hhhhCCCccccEEEEEe-CCeEEEe
Q psy160 253 LAKRYSIKTFPALVYFR-NGNPLIF 276 (346)
Q Consensus 253 ~~~~~~i~~~Pti~~~~-~g~~~~y 276 (346)
+++.|++.++|+.+++. +|+.+.-
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEee
Confidence 67788999999999996 6665533
No 154
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.73 E-value=2.8e-08 Score=76.51 Aligned_cols=75 Identities=20% Similarity=0.367 Sum_probs=51.0
Q ss_pred hccceEEEEEEcCCChhhHHHHHHHHH---HHhhcCcCceEEEEE--cC---------------------hhhhhhCCCc
Q psy160 207 EETQYLAVYFYKLNCNICDQILEGLEK---VDDECDIYGIHMVKI--QD---------------------PQLAKRYSIK 260 (346)
Q Consensus 207 ~~~~~~lv~F~~~~c~~c~~~~~~~~~---la~~~~~~~i~~~~i--~~---------------------~~~~~~~~i~ 260 (346)
.+++++++.|+++||++|+.+.+.+.. +...++. ++.++.+ .. .++++.++|+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 81 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN 81 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence 356899999999999999999998885 4444442 4555554 11 3588999999
Q ss_pred cccEEEEEe-CCeEE-EeecCccc
Q psy160 261 TFPALVYFR-NGNPL-IFEGENKI 282 (346)
Q Consensus 261 ~~Pti~~~~-~g~~~-~y~g~~~~ 282 (346)
++||++++. +|+.+ .+.|..+.
T Consensus 82 gtPt~~~~d~~G~~v~~~~G~~~~ 105 (112)
T PF13098_consen 82 GTPTIVFLDKDGKIVYRIPGYLSP 105 (112)
T ss_dssp SSSEEEECTTTSCEEEEEESS--H
T ss_pred ccCEEEEEcCCCCEEEEecCCCCH
Confidence 999999995 78754 57787753
No 155
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.72 E-value=6.5e-08 Score=74.65 Aligned_cols=57 Identities=14% Similarity=0.374 Sum_probs=40.7
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE------cChhhhhhCCCccccEE
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI------QDPQLAKRYSIKTFPAL 265 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i------~~~~~~~~~~i~~~Pti 265 (346)
..++++|.||++||++|+.+.|.++++++.+.+ ++.++.+ ....+++++++..+|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~ 82 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLASDGEKAEHQRFLKKHGLEAFPYV 82 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEeCCCHHHHHHHHHHhCCCCCcEE
Confidence 357999999999999999999999999888764 4555444 12234555555555543
No 156
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.72 E-value=1.9e-07 Score=75.69 Aligned_cols=85 Identities=13% Similarity=0.255 Sum_probs=60.1
Q ss_pred HhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCC-------------hhhH-Hhh---CCCCcceEEEE
Q psy160 101 LEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD-------------PRYA-RKW---GVTKLPAVVYF 163 (346)
Q Consensus 101 ~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~-------------~~l~-~~~---~i~~~Ptl~~~ 163 (346)
+..++..+|.||++||++|++..|.+++++++++ ..+..+.+|. .... ..+ ++.++||.+++
T Consensus 47 ~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LI 125 (153)
T TIGR02738 47 ANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG-LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLV 125 (153)
T ss_pred hhcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC-CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEE
Confidence 3345677999999999999999999999998863 3344445542 2233 345 88999999999
Q ss_pred ec-CC-cc-eecCCcchhHHHHHHHhh
Q psy160 164 RH-RF-PS-IYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 164 ~~-g~-~~-~y~g~~~~~~~i~~fi~~ 187 (346)
.. |. .. .+.|..+.+ ++.+.+.+
T Consensus 126 D~~G~~i~~~~~G~~s~~-~l~~~I~~ 151 (153)
T TIGR02738 126 NVNTRKAYPVLQGAVDEA-ELANRMDE 151 (153)
T ss_pred eCCCCEEEEEeecccCHH-HHHHHHHH
Confidence 75 44 23 467888744 66666543
No 157
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.71 E-value=5.9e-08 Score=76.92 Aligned_cols=67 Identities=21% Similarity=0.436 Sum_probs=52.7
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcC--ceEEEEE--c-C------------------------hhhhhhCC
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIY--GIHMVKI--Q-D------------------------PQLAKRYS 258 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~--~i~~~~i--~-~------------------------~~~~~~~~ 258 (346)
.+++++|.||++||++|+.+.|.+.++.+++.+. ++.++.+ + . ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 3578999999999999999999999998887532 4555544 1 1 35678899
Q ss_pred CccccEEEEEe-CCeEE
Q psy160 259 IKTFPALVYFR-NGNPL 274 (346)
Q Consensus 259 i~~~Pti~~~~-~g~~~ 274 (346)
|.++|+++++. +|+.+
T Consensus 97 v~~~P~~~lid~~G~i~ 113 (131)
T cd03009 97 IEGIPTLIILDADGEVV 113 (131)
T ss_pred CCCCCEEEEECCCCCEE
Confidence 99999999996 67654
No 158
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.69 E-value=9.4e-08 Score=79.56 Aligned_cols=85 Identities=15% Similarity=0.248 Sum_probs=66.2
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-------------------------ChhhHHhhCCCCc
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-------------------------DPRYARKWGVTKL 157 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-------------------------~~~l~~~~~i~~~ 157 (346)
.+++++|.|+++||++|+...+.+.++++++.+.++.++.++ ...+++.|++..+
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 457899999999999999999999999999865444444332 3467899999999
Q ss_pred ceEEEEe-cCCcc-eecCCcchhHHHHHHHhhc
Q psy160 158 PAVVYFR-HRFPS-IYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 158 Ptl~~~~-~g~~~-~y~g~~~~~~~i~~fi~~~ 188 (346)
|+++++. +|+.. .+.|..+.+ ++.+++.+.
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~~-~l~~~l~~~ 171 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTEE-QLEEYLEKI 171 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCHH-HHHHHHHHh
Confidence 9998886 46633 578888744 788887653
No 159
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.69 E-value=3.7e-08 Score=94.44 Aligned_cols=123 Identities=15% Similarity=0.294 Sum_probs=78.6
Q ss_pred hccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-------------------------------cChhhhh
Q psy160 207 EETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-------------------------------QDPQLAK 255 (346)
Q Consensus 207 ~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-------------------------------~~~~~~~ 255 (346)
+..++++|.|||+||++|+.+.|.+.+++++++..++.++.| .+..+++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak 133 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ 133 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence 367899999999999999999999999999886334444322 2445788
Q ss_pred hCCCccccEEEEE-eCCeEE-EeecCccccccchhhhhhhccCCC---CC-CcccCCCCCCccchhhHHhhcceeEEeec
Q psy160 256 RYSIKTFPALVYF-RNGNPL-IFEGENKILKGTYIGTYISTKAFS---LI-PFCFSEKHPGAFQTELVLRSLKIKIIGKC 329 (346)
Q Consensus 256 ~~~i~~~Pti~~~-~~g~~~-~y~g~~~~~~~~~~~~~i~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (346)
.|+|.++|+++++ ++|+.+ .+.|..+.++ +..+++..+.. +. +-....+...-+ .......+.+.|+|
T Consensus 134 ~fgV~giPTt~IIDkdGkIV~~~~G~~~~ee---L~a~Ie~~~~~~~~~~~~~~~~~~q~~d~---~~~~~~~~~~agGC 207 (521)
T PRK14018 134 SLNISVYPSWAIIGKDGDVQRIVKGSISEAQ---ALALIRNPNADLGSLKHSYYKPDGQKKDS---KIMNTRTIYLAGGC 207 (521)
T ss_pred HcCCCCcCeEEEEcCCCeEEEEEeCCCCHHH---HHHHHHHhhhhhHHhhhhhccccCCcccc---CCCCccEEEEecCC
Confidence 9999999999666 688764 4678775433 56666643321 11 000011111111 12234678888988
Q ss_pred ccccee
Q psy160 330 EDGVQK 335 (346)
Q Consensus 330 ~~~~~~ 335 (346)
==|++.
T Consensus 208 FWg~e~ 213 (521)
T PRK14018 208 FWGLEA 213 (521)
T ss_pred chhhHH
Confidence 655543
No 160
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.68 E-value=8.7e-08 Score=74.98 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=58.1
Q ss_pred hcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCC---------------------CcEEEEeCChhhHHhhCCCCcceE
Q psy160 102 EENEFVTVFFYETDHKDSVKVLERLEKIDGETDNM---------------------DITFVKMADPRYARKWGVTKLPAV 160 (346)
Q Consensus 102 ~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~---------------------~i~~~~~~~~~l~~~~~i~~~Ptl 160 (346)
..+++++|.||++||++|..+.|.+.++++.+.-. .+.++.-.+..++++|+|.+.|++
T Consensus 18 ~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~ 97 (123)
T cd03011 18 LSGKPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAI 97 (123)
T ss_pred hCCCEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEE
Confidence 35588999999999999999999999888764211 011111124579999999999999
Q ss_pred EEEecCC-cceecCCcchhHHHHH
Q psy160 161 VYFRHRF-PSIYRGDLSEEEEVLQ 183 (346)
Q Consensus 161 ~~~~~g~-~~~y~g~~~~~~~i~~ 183 (346)
+++.++. ...+.|..+ .++|.+
T Consensus 98 ~vid~~gi~~~~~g~~~-~~~~~~ 120 (123)
T cd03011 98 VIVDPGGIVFVTTGVTS-EWGLRL 120 (123)
T ss_pred EEEcCCCeEEEEeccCC-HHHHHh
Confidence 9998655 334667666 335544
No 161
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.68 E-value=9.6e-08 Score=71.14 Aligned_cols=62 Identities=23% Similarity=0.470 Sum_probs=49.4
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcC-cCceEEEEE----------------------------cChhhhhhCCC
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECD-IYGIHMVKI----------------------------QDPQLAKRYSI 259 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~-~~~i~~~~i----------------------------~~~~~~~~~~i 259 (346)
+++++|.||++||++|+...|.+.++.++++ +.++.++.+ ....+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 4789999999999999999999999999998 336887777 12346778888
Q ss_pred ccccEEEEEeC
Q psy160 260 KTFPALVYFRN 270 (346)
Q Consensus 260 ~~~Pti~~~~~ 270 (346)
.++|+++++..
T Consensus 81 ~~iP~~~lld~ 91 (95)
T PF13905_consen 81 NGIPTLVLLDP 91 (95)
T ss_dssp TSSSEEEEEET
T ss_pred CcCCEEEEECC
Confidence 99999988853
No 162
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.68 E-value=9e-08 Score=76.03 Aligned_cols=71 Identities=18% Similarity=0.386 Sum_probs=53.7
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcC--ceEEEEE--c-C-------------------------hhhhhhC
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIY--GIHMVKI--Q-D-------------------------PQLAKRY 257 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~--~i~~~~i--~-~-------------------------~~~~~~~ 257 (346)
.+++++|.||++||++|+...|.+.++++++++. ++.+..+ + . ..+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 3589999999999999999999999998887642 4555544 1 1 1356679
Q ss_pred CCccccEEEEEe-CCeEEEeec
Q psy160 258 SIKTFPALVYFR-NGNPLIFEG 278 (346)
Q Consensus 258 ~i~~~Pti~~~~-~g~~~~y~g 278 (346)
+|.++|+++++. +|+.+..++
T Consensus 96 ~v~~iPt~~lid~~G~iv~~~~ 117 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVTTNA 117 (132)
T ss_pred CCCCCCEEEEECCCCCEEchhH
Confidence 999999999996 666554333
No 163
>KOG0913|consensus
Probab=98.68 E-value=8.4e-09 Score=86.47 Aligned_cols=104 Identities=13% Similarity=0.196 Sum_probs=89.3
Q ss_pred CccccCceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcc
Q psy160 82 VFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLP 158 (346)
Q Consensus 82 ~p~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~P 158 (346)
.|.....+..++++|...+++. -|+++|++|||+.|+.+.|+|+..|.--.+.++.++.+| ++-|.-+|=+...|
T Consensus 19 ~~~r~s~~~~~~eenw~~~l~g--ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLp 96 (248)
T KOG0913|consen 19 TPRRSSKLTRIDEENWKELLTG--EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALP 96 (248)
T ss_pred CccccceeEEecccchhhhhch--HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecc
Confidence 3444558889999999988654 599999999999999999999999987767777777776 88899999999999
Q ss_pred eEEEEecCCcceecCCcchhHHHHHHHhhc
Q psy160 159 AVVYFRHRFPSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 159 tl~~~~~g~~~~y~g~~~~~~~i~~fi~~~ 188 (346)
||.-.++|.--+|.|.++.. +++.|+...
T Consensus 97 tIYHvkDGeFrrysgaRdk~-dfisf~~~r 125 (248)
T KOG0913|consen 97 TIYHVKDGEFRRYSGARDKN-DFISFEEHR 125 (248)
T ss_pred eEEEeeccccccccCcccch-hHHHHHHhh
Confidence 99999999877899999955 899998765
No 164
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.65 E-value=1.4e-07 Score=69.21 Aligned_cols=75 Identities=15% Similarity=0.174 Sum_probs=56.0
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-ChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHH
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVL 182 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~ 182 (346)
++.-+..|+++||++|....+.+++++....+..+..++++ .++++.+|||.+.||+++ +|+ ..+.|..+ .++++
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~-~~~~G~~~-~~e~~ 87 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGE-LFGFGRMT-LEEIL 87 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCE-EEEeCCCC-HHHHh
Confidence 35568999999999999999999999987654344444444 678999999999999975 665 34567554 33443
No 165
>KOG0914|consensus
Probab=98.65 E-value=3.3e-08 Score=81.76 Aligned_cols=85 Identities=19% Similarity=0.277 Sum_probs=72.7
Q ss_pred cccCceeec-CHHHHHHHHhcC--CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCC--
Q psy160 84 EIKNEIEEV-NRRMLDKLLEEN--EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVT-- 155 (346)
Q Consensus 84 ~~~~~v~~l-~~~~~~~~~~~~--~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~-- 155 (346)
.++..+.-+ +.+.+++.+..+ ..|+|.|++-|.+.|.++.|.+.+++.++......|+++| .++++.+|+|+
T Consensus 121 ~gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s 200 (265)
T KOG0914|consen 121 SGPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLS 200 (265)
T ss_pred CCchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccC
Confidence 456777888 566667766655 5799999999999999999999999999977779999998 88999999986
Q ss_pred ----CcceEEEEecCCc
Q psy160 156 ----KLPAVVYFRHRFP 168 (346)
Q Consensus 156 ----~~Ptl~~~~~g~~ 168 (346)
..||+++|++|+.
T Consensus 201 ~~srQLPT~ilFq~gkE 217 (265)
T KOG0914|consen 201 PGSRQLPTYILFQKGKE 217 (265)
T ss_pred cccccCCeEEEEccchh
Confidence 6799999999873
No 166
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.64 E-value=1e-07 Score=75.54 Aligned_cols=66 Identities=15% Similarity=0.278 Sum_probs=51.7
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCC--C--cEEEEeC-C------------------------hhhHHhhC
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNM--D--ITFVKMA-D------------------------PRYARKWG 153 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~--~--i~~~~~~-~------------------------~~l~~~~~ 153 (346)
.+++++|.||++||++|++..|.+.++++++... + +.++.+| . ..++++|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 4578999999999999999999999998887432 3 3344443 1 35778999
Q ss_pred CCCcceEEEEe-cCCc
Q psy160 154 VTKLPAVVYFR-HRFP 168 (346)
Q Consensus 154 i~~~Ptl~~~~-~g~~ 168 (346)
|.++|+++++. +|+.
T Consensus 97 v~~~P~~~lid~~G~i 112 (131)
T cd03009 97 IEGIPTLIILDADGEV 112 (131)
T ss_pred CCCCCEEEEECCCCCE
Confidence 99999999997 5653
No 167
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.64 E-value=1.1e-07 Score=76.26 Aligned_cols=68 Identities=16% Similarity=0.214 Sum_probs=50.4
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccC-------CCcEEEEe--C--------------------------Chh
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDN-------MDITFVKM--A--------------------------DPR 147 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~-------~~i~~~~~--~--------------------------~~~ 147 (346)
++++++|.|+|+||++|++.+|.+.++++.+.+ .++.++.+ | ...
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 568999999999999999999999998775521 12333322 1 125
Q ss_pred hHHhhCCCCcceEEEEec-CCcce
Q psy160 148 YARKWGVTKLPAVVYFRH-RFPSI 170 (346)
Q Consensus 148 l~~~~~i~~~Ptl~~~~~-g~~~~ 170 (346)
++.+|++.++||++++.. |+...
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~ 127 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLA 127 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEe
Confidence 788999999999999974 55433
No 168
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.63 E-value=9.5e-07 Score=86.51 Aligned_cols=167 Identities=14% Similarity=0.178 Sum_probs=116.5
Q ss_pred ecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcCChHHHHhcCCCCCCeEEEEeCC--ceeeecCCCCCHHHHHHHHhcc
Q psy160 3 INDENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQ--VPLLYDGDLFDEEKILTWLTSQ 80 (346)
Q Consensus 3 Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~~c~~~~i~~~Ptl~~f~~~--~~~~y~G~~~~~~~i~~~i~~~ 80 (346)
++.+.|..|+++..-++++++..++ |.+...+.. ...|++.+.++| .-+.|.|-+..+ ++..|+..-
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~s~~--i~~~~~~~~--------~~~p~~~~~~~~~~~~i~f~g~P~g~-Ef~s~i~~i 93 (517)
T PRK15317 25 ASLDDSEKSAELKELLEEIASLSDK--ITVEEDSLD--------VRKPSFSITRPGEDTGVRFAGIPMGH-EFTSLVLAL 93 (517)
T ss_pred EEeCCCchHHHHHHHHHHHHHhCCc--eEEEEccCC--------CCCCEEEEEcCCccceEEEEecCccH-HHHHHHHHH
Confidence 3455799999998888888887643 443222211 346999998765 346799988775 777776543
Q ss_pred CCccccCceeecCHHHHHHHHhcC-CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCC
Q psy160 81 DVFEIKNEIEEVNRRMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTK 156 (346)
Q Consensus 81 ~~p~~~~~v~~l~~~~~~~~~~~~-~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~ 156 (346)
... +..-..|+++..+.+-.=+ +..+..|+++.|++|......+.+++.... +|..-.+| +++++.+|+|.+
T Consensus 94 ~~~--~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~id~~~~~~~~~~~~v~~ 169 (517)
T PRK15317 94 LQV--GGHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP--NITHTMIDGALFQDEVEARNIMA 169 (517)
T ss_pred HHh--cCCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--CceEEEEEchhCHhHHHhcCCcc
Confidence 221 1133456666666654434 445889999999999999999999887633 46655555 899999999999
Q ss_pred cceEEEEecCCcceecCCcchhHHHHHHHhhc
Q psy160 157 LPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 157 ~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~~~ 188 (346)
.|++++ +|+ ..+.|.... +++++.+.+.
T Consensus 170 VP~~~i--~~~-~~~~g~~~~-~~~~~~~~~~ 197 (517)
T PRK15317 170 VPTVFL--NGE-EFGQGRMTL-EEILAKLDTG 197 (517)
T ss_pred cCEEEE--CCc-EEEecCCCH-HHHHHHHhcc
Confidence 999976 444 457788774 4888888764
No 169
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.60 E-value=1.6e-07 Score=74.54 Aligned_cols=67 Identities=13% Similarity=0.196 Sum_probs=51.0
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCC--CcE--EEEeCC--------------------------hhhHHhh
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNM--DIT--FVKMAD--------------------------PRYARKW 152 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~--~i~--~~~~~~--------------------------~~l~~~~ 152 (346)
.+++++|.|+++||++|+..+|.+.++++.++.. ++. ++.+|. ..+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 4688999999999999999999999998887432 333 334331 2456679
Q ss_pred CCCCcceEEEEe-cCCcc
Q psy160 153 GVTKLPAVVYFR-HRFPS 169 (346)
Q Consensus 153 ~i~~~Ptl~~~~-~g~~~ 169 (346)
+|.++|+++++. +|+..
T Consensus 96 ~v~~iPt~~lid~~G~iv 113 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVV 113 (132)
T ss_pred CCCCCCEEEEECCCCCEE
Confidence 999999999996 45543
No 170
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.60 E-value=4e-07 Score=71.12 Aligned_cols=99 Identities=13% Similarity=0.121 Sum_probs=76.1
Q ss_pred ecCHHHHHHHHhcCCcEEEEEECC--CChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEec
Q psy160 91 EVNRRMLDKLLEENEFVTVFFYET--DHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRH 165 (346)
Q Consensus 91 ~l~~~~~~~~~~~~~~~lv~F~~~--~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~ 165 (346)
.++..+++.++......+++|-.. -++.+....-.+.++++++.+.++.++++| ++.++.+|||.++||+++|++
T Consensus 21 ~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~Fkd 100 (132)
T PRK11509 21 PVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTG 100 (132)
T ss_pred ccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEEC
Confidence 345578888887777665555432 356777888889999999864446777665 889999999999999999999
Q ss_pred CCcc-eecCCcchhHHHHHHHhhccc
Q psy160 166 RFPS-IYRGDLSEEEEVLQWLITQKT 190 (346)
Q Consensus 166 g~~~-~y~g~~~~~~~i~~fi~~~~~ 190 (346)
|+.. ...|..+.. .+.+++.+...
T Consensus 101 Gk~v~~i~G~~~k~-~l~~~I~~~L~ 125 (132)
T PRK11509 101 GNYRGVLNGIHPWA-ELINLMRGLVE 125 (132)
T ss_pred CEEEEEEeCcCCHH-HHHHHHHHHhc
Confidence 9954 577877754 89999887654
No 171
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.57 E-value=2.4e-07 Score=82.52 Aligned_cols=72 Identities=22% Similarity=0.331 Sum_probs=55.9
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEc------------ChhhhhhCCCccccEEEEEeC-CeEEE
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ------------DPQLAKRYSIKTFPALVYFRN-GNPLI 275 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~------------~~~~~~~~~i~~~Pti~~~~~-g~~~~ 275 (346)
+++++|.||++||++|+.+.|.+.++++++. ..+..+.++ +..+++++||.++|+++++++ |+.+.
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence 5789999999999999999999999999975 244444442 346889999999999999986 54332
Q ss_pred --eecCcc
Q psy160 276 --FEGENK 281 (346)
Q Consensus 276 --y~g~~~ 281 (346)
..|..+
T Consensus 245 ~v~~G~~s 252 (271)
T TIGR02740 245 PIGFGVMS 252 (271)
T ss_pred EEEeCCCC
Confidence 446554
No 172
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.57 E-value=3e-07 Score=68.44 Aligned_cols=62 Identities=19% Similarity=0.400 Sum_probs=48.2
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHhhcc-CCCcEEEEe--C--------------------------ChhhHHhhCC
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKIDGETD-NMDITFVKM--A--------------------------DPRYARKWGV 154 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~-~~~i~~~~~--~--------------------------~~~l~~~~~i 154 (346)
++++++.|+++||++|++..|.+.++.++++ +.++.++.+ | ...+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 4688999999999999999999999999997 444655543 1 3457788899
Q ss_pred CCcceEEEEec
Q psy160 155 TKLPAVVYFRH 165 (346)
Q Consensus 155 ~~~Ptl~~~~~ 165 (346)
.++|+++++..
T Consensus 81 ~~iP~~~lld~ 91 (95)
T PF13905_consen 81 NGIPTLVLLDP 91 (95)
T ss_dssp TSSSEEEEEET
T ss_pred CcCCEEEEECC
Confidence 99999988864
No 173
>KOG0914|consensus
Probab=98.57 E-value=9e-08 Score=79.26 Aligned_cols=84 Identities=13% Similarity=0.341 Sum_probs=69.3
Q ss_pred cCcEEEc-cHHHHHHHHh--ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCC-----
Q psy160 191 EDRIELI-TRVMLETMVE--ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSI----- 259 (346)
Q Consensus 191 ~~~v~~l-~~~~~~~~~~--~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i----- 259 (346)
|..+..+ +.+.+++.++ ....|+|.||+.|.+.|....|.+.+|+.+|....++|+++ ..++.+.+|+|
T Consensus 123 pe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~ 202 (265)
T KOG0914|consen 123 PETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPG 202 (265)
T ss_pred chheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcc
Confidence 4456666 4455555554 35689999999999999999999999999998767999998 68899999988
Q ss_pred -ccccEEEEEeCCeEE
Q psy160 260 -KTFPALVYFRNGNPL 274 (346)
Q Consensus 260 -~~~Pti~~~~~g~~~ 274 (346)
++.||+++|++|+.+
T Consensus 203 srQLPT~ilFq~gkE~ 218 (265)
T KOG0914|consen 203 SRQLPTYILFQKGKEV 218 (265)
T ss_pred cccCCeEEEEccchhh
Confidence 468999999999754
No 174
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.57 E-value=6.5e-06 Score=80.65 Aligned_cols=160 Identities=16% Similarity=0.163 Sum_probs=110.6
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEecCC--cceecCCcchhHHHH
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRF--PSIYRGDLSEEEEVL 182 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~g~--~~~y~g~~~~~~~i~ 182 (346)
+..++.|.. .|+.|.++...+++++..-.+ |.+...+.. ...|++.+..+|+ .++|.|-..-. ++-
T Consensus 20 ~v~~~~~~~-~~~~~~~~~~~~~~~~~~s~~--i~~~~~~~~--------~~~p~~~~~~~~~~~~i~f~g~P~g~-Ef~ 87 (517)
T PRK15317 20 PIELVASLD-DSEKSAELKELLEEIASLSDK--ITVEEDSLD--------VRKPSFSITRPGEDTGVRFAGIPMGH-EFT 87 (517)
T ss_pred CEEEEEEeC-CCchHHHHHHHHHHHHHhCCc--eEEEEccCC--------CCCCEEEEEcCCccceEEEEecCccH-HHH
Confidence 334555655 799999888888888765333 544332211 3479999987665 57798876644 788
Q ss_pred HHHhhccc-cCcEEEccHHHHHHHHhccce-EEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhC
Q psy160 183 QWLITQKT-EDRIELITRVMLETMVEETQY-LAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRY 257 (346)
Q Consensus 183 ~fi~~~~~-~~~v~~l~~~~~~~~~~~~~~-~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~ 257 (346)
.|+..... ...-..++++..+.+.+-+++ -+..|.++.|++|......+.++|.... ++..-.+ ..++++++|
T Consensus 88 s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~id~~~~~~~~~~~ 165 (517)
T PRK15317 88 SLVLALLQVGGHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP--NITHTMIDGALFQDEVEAR 165 (517)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--CceEEEEEchhCHhHHHhc
Confidence 88766432 122335666666665543444 4667999999999999999999988644 5665555 789999999
Q ss_pred CCccccEEEEEeCCeEEEeecCcc
Q psy160 258 SIKTFPALVYFRNGNPLIFEGENK 281 (346)
Q Consensus 258 ~i~~~Pti~~~~~g~~~~y~g~~~ 281 (346)
++.+.|++++ +|+ ..+.|..+
T Consensus 166 ~v~~VP~~~i--~~~-~~~~g~~~ 186 (517)
T PRK15317 166 NIMAVPTVFL--NGE-EFGQGRMT 186 (517)
T ss_pred CCcccCEEEE--CCc-EEEecCCC
Confidence 9999999965 554 34677665
No 175
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.56 E-value=3.8e-07 Score=75.98 Aligned_cols=83 Identities=11% Similarity=0.129 Sum_probs=60.0
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcE---------------------E--EEeC-ChhhHHhhCCCCcc
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDIT---------------------F--VKMA-DPRYARKWGVTKLP 158 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~---------------------~--~~~~-~~~l~~~~~i~~~P 158 (346)
.+++++|.||++||++|+++.|.+.++++. +..+. + +..| ...+.+.|++.++|
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P 139 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAP 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCC
Confidence 568999999999999999999999988764 11111 1 1123 44677899999999
Q ss_pred eEEEE-ecCC-cceecCCcchhHHHHHHHhhc
Q psy160 159 AVVYF-RHRF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 159 tl~~~-~~g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
+.+++ ++|+ ...+.|..+.+ ++.+++.+.
T Consensus 140 ~~~~id~~G~i~~~~~G~~~~~-~l~~~l~~~ 170 (173)
T TIGR00385 140 ETFLVDGNGVILYRHAGPLNNE-VWTEGFLPA 170 (173)
T ss_pred eEEEEcCCceEEEEEeccCCHH-HHHHHHHHH
Confidence 66666 5677 45577887744 788877654
No 176
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.55 E-value=2.9e-07 Score=71.00 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=40.7
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe-C-----ChhhHHhhCCCCcceE
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM-A-----DPRYARKWGVTKLPAV 160 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~-~-----~~~l~~~~~i~~~Ptl 160 (346)
++++++|.||++||++|+...|.++++++.+.+ ++.++.+ + ..++++++++..+|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~ 82 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLASDGEKAEHQRFLKKHGLEAFPYV 82 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEeCCCHHHHHHHHHHhCCCCCcEE
Confidence 467899999999999999999999999887633 2433332 1 2345566666666654
No 177
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.55 E-value=3e-07 Score=72.39 Aligned_cols=73 Identities=14% Similarity=0.071 Sum_probs=53.9
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEE-----------------------EEeC-ChhhHHhhCCCCcc
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITF-----------------------VKMA-DPRYARKWGVTKLP 158 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~-----------------------~~~~-~~~l~~~~~i~~~P 158 (346)
++++++|.|+++||++|++..|.++++++... ..+.. +..| ...+++.|++.++|
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~-~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P 102 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR-VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVP 102 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC-cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCC
Confidence 36789999999999999999999999987652 11111 1122 45688899999999
Q ss_pred eEEEE-ecCC-cceecCCcc
Q psy160 159 AVVYF-RHRF-PSIYRGDLS 176 (346)
Q Consensus 159 tl~~~-~~g~-~~~y~g~~~ 176 (346)
+.+++ ++|+ ...+.|..+
T Consensus 103 ~~~~ld~~G~v~~~~~G~~~ 122 (127)
T cd03010 103 ETFLIDGDGIIRYKHVGPLT 122 (127)
T ss_pred eEEEECCCceEEEEEeccCC
Confidence 66655 5677 456788876
No 178
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.53 E-value=3.7e-07 Score=75.92 Aligned_cols=75 Identities=13% Similarity=0.376 Sum_probs=59.6
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c-----------------------ChhhhhhCCCccc
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q-----------------------DPQLAKRYSIKTF 262 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~-----------------------~~~~~~~~~i~~~ 262 (346)
.+++++|.||++||++|+...+.+.++++++.+.++.++.+ + +..+++.|++.++
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 45789999999999999999999999999987545666666 1 2466889999999
Q ss_pred cEEEEEe-CCeEE-EeecCccc
Q psy160 263 PALVYFR-NGNPL-IFEGENKI 282 (346)
Q Consensus 263 Pti~~~~-~g~~~-~y~g~~~~ 282 (346)
|+++++. +|+.+ .+.|..+.
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~ 161 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTE 161 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCH
Confidence 9988885 67654 46777653
No 179
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.53 E-value=3.5e-07 Score=74.16 Aligned_cols=76 Identities=9% Similarity=0.269 Sum_probs=51.5
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcCC-------------hHHH-Hhc---CCCCCCeEEEEeC-Cce-e
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKISD-------------TEAA-AKY---NIINLPSLVYFRK-QVP-L 61 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~-------------~~~c-~~~---~i~~~Ptl~~f~~-~~~-~ 61 (346)
|.|||+||++|++.+|.+.+++++++ ..+..+.+|+ .... ..| ++.++||.+++.. |.. .
T Consensus 55 vnFWAsWCppCr~e~P~L~~l~~~~~-~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 55 VFFYQSTCPYCHQFAPVLKRFSQQFG-LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNTRKAY 133 (153)
T ss_pred EEEECCCChhHHHHHHHHHHHHHHcC-CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence 58999999999999999999998762 2233334442 2333 345 8899999999874 442 2
Q ss_pred -eecCCCCCHHHHHHHHh
Q psy160 62 -LYDGDLFDEEKILTWLT 78 (346)
Q Consensus 62 -~y~G~~~~~~~i~~~i~ 78 (346)
.+.|..+. +++.+.+.
T Consensus 134 ~~~~G~~s~-~~l~~~I~ 150 (153)
T TIGR02738 134 PVLQGAVDE-AELANRMD 150 (153)
T ss_pred EEeecccCH-HHHHHHHH
Confidence 46787655 45655543
No 180
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.51 E-value=6.4e-07 Score=65.75 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=51.9
Q ss_pred ceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCeEEEeecCc
Q psy160 210 QYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPLIFEGEN 280 (346)
Q Consensus 210 ~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~~~y~g~~ 280 (346)
..-+..|+++||++|....+.+++++..+. ++.+..+ ..++++++|+|.+.|++++ +|+. .+.|..
T Consensus 13 pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~-~~~G~~ 81 (89)
T cd03026 13 PINFETYVSLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGEL-FGFGRM 81 (89)
T ss_pred CEEEEEEECCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEE-EEeCCC
Confidence 345677899999999999999999998865 3555554 5678999999999999964 7764 456643
No 181
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.49 E-value=3.1e-07 Score=70.22 Aligned_cols=64 Identities=20% Similarity=0.285 Sum_probs=52.6
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEE--eCC------------------------hhhHHhhCCCCc
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVK--MAD------------------------PRYARKWGVTKL 157 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~--~~~------------------------~~l~~~~~i~~~ 157 (346)
++++++.|+++||++|+...+.+.++.+.+...++.++. ++. ..+++.|++.++
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 578999999999999999999999999998544455554 443 678999999999
Q ss_pred ceEEEEe-cCC
Q psy160 158 PAVVYFR-HRF 167 (346)
Q Consensus 158 Ptl~~~~-~g~ 167 (346)
|+++++. +|+
T Consensus 99 P~~~l~d~~g~ 109 (116)
T cd02966 99 PTTFLIDRDGR 109 (116)
T ss_pred ceEEEECCCCc
Confidence 9999996 454
No 182
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.48 E-value=8.5e-07 Score=74.70 Aligned_cols=82 Identities=12% Similarity=0.085 Sum_probs=57.6
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC------------------------ChhhHHhhCCCCcc
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA------------------------DPRYARKWGVTKLP 158 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~------------------------~~~l~~~~~i~~~P 158 (346)
.+++++|.||++||++|++..|.+.++++. +..+..+..+ ...++..|++.++|
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence 568899999999999999999999988753 2222222211 22356689999999
Q ss_pred eEEEEe-cCC-cceecCCcchhHHHHHHHhh
Q psy160 159 AVVYFR-HRF-PSIYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 159 tl~~~~-~g~-~~~y~g~~~~~~~i~~fi~~ 187 (346)
+.+++. +|+ ...+.|..+.+ ++.+.++.
T Consensus 145 ~t~vid~~G~i~~~~~G~~~~~-~l~~~i~~ 174 (185)
T PRK15412 145 ETFLIDGNGIIRYRHAGDLNPR-VWESEIKP 174 (185)
T ss_pred eEEEECCCceEEEEEecCCCHH-HHHHHHHH
Confidence 766664 677 55678888744 66666554
No 183
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.48 E-value=1.3e-06 Score=68.27 Aligned_cols=98 Identities=14% Similarity=0.164 Sum_probs=73.6
Q ss_pred HHHHHHhhccccCcEEEccHHHHHHHHhccceEEEEEEcC--CChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhh
Q psy160 180 EVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKL--NCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLA 254 (346)
Q Consensus 180 ~i~~fi~~~~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~--~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~ 254 (346)
.+++-+... ....++..++++++......+|.|-.. -++.+....-.+.++++++.+.++.++++ .+++++
T Consensus 9 ~l~~rl~~~----g~~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA 84 (132)
T PRK11509 9 ALWQRMLAR----GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIG 84 (132)
T ss_pred HHHHHHHHc----CCCccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHH
Confidence 455555553 223556688888888777665555432 34666778889999999997545889998 789999
Q ss_pred hhCCCccccEEEEEeCCeEEE-eecCcc
Q psy160 255 KRYSIKTFPALVYFRNGNPLI-FEGENK 281 (346)
Q Consensus 255 ~~~~i~~~Pti~~~~~g~~~~-y~g~~~ 281 (346)
.+|||.++||+++|++|+.+. ..|.++
T Consensus 85 ~~fgV~siPTLl~FkdGk~v~~i~G~~~ 112 (132)
T PRK11509 85 DRFGVFRFPATLVFTGGNYRGVLNGIHP 112 (132)
T ss_pred HHcCCccCCEEEEEECCEEEEEEeCcCC
Confidence 999999999999999999764 567655
No 184
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.48 E-value=4.9e-07 Score=70.71 Aligned_cols=72 Identities=18% Similarity=0.397 Sum_probs=52.9
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEE---------------------EE--cChhhhhhCCCccccE
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMV---------------------KI--QDPQLAKRYSIKTFPA 264 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~---------------------~i--~~~~~~~~~~i~~~Pt 264 (346)
..++++|.||++||++|..+.|.+.++++.+. -+.+. .+ .+..+++.|+|.+.|+
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~ 96 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPA 96 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccE
Confidence 44799999999999999999999998887743 11111 11 3457899999999999
Q ss_pred EEEEeCCeE-EEeecCcc
Q psy160 265 LVYFRNGNP-LIFEGENK 281 (346)
Q Consensus 265 i~~~~~g~~-~~y~g~~~ 281 (346)
++++.+++. ..+.|..+
T Consensus 97 ~~vid~~gi~~~~~g~~~ 114 (123)
T cd03011 97 IVIVDPGGIVFVTTGVTS 114 (123)
T ss_pred EEEEcCCCeEEEEeccCC
Confidence 999976552 23455554
No 185
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.46 E-value=9.3e-07 Score=69.61 Aligned_cols=70 Identities=11% Similarity=0.144 Sum_probs=52.6
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--------------------------cChhhhhhCCCccc
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--------------------------QDPQLAKRYSIKTF 262 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--------------------------~~~~~~~~~~i~~~ 262 (346)
+++++|.||++||++|+.+.|.+.++++.+. +.++.+ .+..+++.|++.++
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~---~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~ 101 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQGR---VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV 101 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC---cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence 5789999999999999999999999987752 222222 34467888999999
Q ss_pred cEEEEE-eCCeE-EEeecCcc
Q psy160 263 PALVYF-RNGNP-LIFEGENK 281 (346)
Q Consensus 263 Pti~~~-~~g~~-~~y~g~~~ 281 (346)
|+.+++ ++|+. ..+.|..+
T Consensus 102 P~~~~ld~~G~v~~~~~G~~~ 122 (127)
T cd03010 102 PETFLIDGDGIIRYKHVGPLT 122 (127)
T ss_pred CeEEEECCCceEEEEEeccCC
Confidence 966555 68874 34667664
No 186
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.43 E-value=6.9e-06 Score=80.42 Aligned_cols=167 Identities=14% Similarity=0.202 Sum_probs=114.1
Q ss_pred cCCCChhhHHHHHHHHHHHhhhcccCCeEEEcCChHHHHhcCCCCCCeEEEEeCCc--eeeecCCCCCHHHHHHHHhccC
Q psy160 4 NDENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQV--PLLYDGDLFDEEKILTWLTSQD 81 (346)
Q Consensus 4 y~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~~c~~~~i~~~Ptl~~f~~~~--~~~y~G~~~~~~~i~~~i~~~~ 81 (346)
+.+.|..|+++...++++++..++ |.+...+ .+....|++.+..+|. -+.|.|-+..+ ++..|+..-.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~s~k--i~~~~~~-------~~~~~~p~~~~~~~~~~~~i~f~g~P~g~-Ef~s~i~~i~ 95 (515)
T TIGR03140 26 SAGSHEKSKELLELLDEIASLSDK--ISLTQNT-------ADTLRKPSFTILRDGADTGIRFAGIPGGH-EFTSLVLAIL 95 (515)
T ss_pred EeCCCchhHHHHHHHHHHHHhCCC--eEEEEec-------CCcCCCCeEEEecCCcccceEEEecCCcH-HHHHHHHHHH
Confidence 344789999888888888776644 3332211 1113559999987653 47899988875 7777765422
Q ss_pred CccccCceeecCHHHHHHHHhcC-CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCc
Q psy160 82 VFEIKNEIEEVNRRMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKL 157 (346)
Q Consensus 82 ~p~~~~~v~~l~~~~~~~~~~~~-~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~ 157 (346)
.. +..-..|+++..+.+-.=+ +..+-.|+++.|++|......+.+++.... +|..-.+| +++++.+|++.+.
T Consensus 96 ~~--~~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~id~~~~~~~~~~~~v~~V 171 (515)
T TIGR03140 96 QV--GGHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP--NISHTMIDGALFQDEVEALGIQGV 171 (515)
T ss_pred Hh--cCCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC--CceEEEEEchhCHHHHHhcCCccc
Confidence 22 1123556777666655433 445889999999999998888888887643 35555555 8899999999999
Q ss_pred ceEEEEecCCcceecCCcchhHHHHHHHhhc
Q psy160 158 PAVVYFRHRFPSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 158 Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~~~ 188 (346)
|++++ +|+ ..+.|..... .+++.+...
T Consensus 172 P~~~i--~~~-~~~~g~~~~~-~~~~~l~~~ 198 (515)
T TIGR03140 172 PAVFL--NGE-EFHNGRMDLA-ELLEKLEET 198 (515)
T ss_pred CEEEE--CCc-EEEecCCCHH-HHHHHHhhc
Confidence 99976 443 4577877744 777777654
No 187
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.43 E-value=6.5e-07 Score=64.75 Aligned_cols=69 Identities=16% Similarity=0.333 Sum_probs=46.9
Q ss_pred HHHHHHHhccceEEEEEEcCCChhhHHHHHHH---HHHHhhcCcCceEEEEE--cChhhhhhCCCccccEEEEEe
Q psy160 200 VMLETMVEETQYLAVYFYKLNCNICDQILEGL---EKVDDECDIYGIHMVKI--QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 200 ~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~---~~la~~~~~~~i~~~~i--~~~~~~~~~~i~~~Pti~~~~ 269 (346)
+.+.+..+++++++|.|+++||++|+.|...+ .++.+.+.+ ++..+.+ +..+-...+...++|+++++.
T Consensus 8 ~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~-~fv~v~vd~~~~~~~~~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 8 EALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK-NFVLVKVDVDDEDPNAQFDRQGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH-CSEEEEEETTTHHHHHHHHHCSSSEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC-CEEEEEEEcCCCChhHHhCCccCCEEEEeC
Confidence 34455667899999999999999999998777 344443443 6777777 222211122226699999985
No 188
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.42 E-value=9.2e-07 Score=92.91 Aligned_cols=85 Identities=16% Similarity=0.206 Sum_probs=66.4
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe-----C-------------------------ChhhHHhh
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM-----A-------------------------DPRYARKW 152 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~-----~-------------------------~~~l~~~~ 152 (346)
.+++++|.|||+||++|+...|.++++++++++.++.++.+ | ...+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 46899999999999999999999999999986555555433 1 23567899
Q ss_pred CCCCcceEEEE-ecCC-cceecCCcchhHHHHHHHhhc
Q psy160 153 GVTKLPAVVYF-RHRF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 153 ~i~~~Ptl~~~-~~g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
+|.++|+++++ ++|+ ...+.|....+ .+.+++...
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~-~l~~~l~~~ 535 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRK-DLDDLVEAA 535 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHH-HHHHHHHHH
Confidence 99999999999 5787 34577877644 777777653
No 189
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.41 E-value=1.6e-06 Score=66.15 Aligned_cols=65 Identities=25% Similarity=0.472 Sum_probs=54.6
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--cC------------------------hhhhhhCCCccc
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--QD------------------------PQLAKRYSIKTF 262 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~~------------------------~~~~~~~~i~~~ 262 (346)
+++++|.|+++||++|+...+.+.++.+++.+.++.++.+ +. ..+.+.|++.++
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 6799999999999999999999999999986446777776 32 668899999999
Q ss_pred cEEEEEe-CCeE
Q psy160 263 PALVYFR-NGNP 273 (346)
Q Consensus 263 Pti~~~~-~g~~ 273 (346)
|+++++. +|+.
T Consensus 99 P~~~l~d~~g~v 110 (116)
T cd02966 99 PTTFLIDRDGRI 110 (116)
T ss_pred ceEEEECCCCcE
Confidence 9999885 5654
No 190
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.39 E-value=1.7e-06 Score=68.13 Aligned_cols=65 Identities=14% Similarity=0.190 Sum_probs=50.1
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC------------------------------ChhhHHhh
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA------------------------------DPRYARKW 152 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~------------------------------~~~l~~~~ 152 (346)
++++++|.|+++||+.|...+|.+.++.++++..++.++.++ ...+++.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 457899999999999999999999999999865555544321 23466778
Q ss_pred CCCCcceEEEEe-cCC
Q psy160 153 GVTKLPAVVYFR-HRF 167 (346)
Q Consensus 153 ~i~~~Ptl~~~~-~g~ 167 (346)
++.++|+.+++. +|+
T Consensus 102 ~v~~~P~~~vid~~G~ 117 (126)
T cd03012 102 GNQYWPALYLIDPTGN 117 (126)
T ss_pred CCCcCCeEEEECCCCc
Confidence 888888888885 354
No 191
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.37 E-value=1.6e-06 Score=73.09 Aligned_cols=71 Identities=17% Similarity=0.270 Sum_probs=50.8
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---c-----------------------ChhhhhhCCCcc
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---Q-----------------------DPQLAKRYSIKT 261 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~-----------------------~~~~~~~~~i~~ 261 (346)
..++++|.||++||++|+...|.+.+++++ ++.+..+ + ...+++.|++.+
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~ 142 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 142 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence 567999999999999999999999998753 3334433 1 112445789999
Q ss_pred ccEEEEE-eCCeE-EEeecCccc
Q psy160 262 FPALVYF-RNGNP-LIFEGENKI 282 (346)
Q Consensus 262 ~Pti~~~-~~g~~-~~y~g~~~~ 282 (346)
+|+.+++ ++|+. ..+.|..+.
T Consensus 143 ~P~t~vid~~G~i~~~~~G~~~~ 165 (185)
T PRK15412 143 APETFLIDGNGIIRYRHAGDLNP 165 (185)
T ss_pred CCeEEEECCCceEEEEEecCCCH
Confidence 9976666 58873 446677653
No 192
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.37 E-value=2.4e-06 Score=67.22 Aligned_cols=65 Identities=20% Similarity=0.376 Sum_probs=49.8
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE------------------------------cChhhhhhC
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI------------------------------QDPQLAKRY 257 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------------------------~~~~~~~~~ 257 (346)
..++++|.||++||++|....|.+.++.+++++.++.++.+ ....+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 45799999999999999999999999999997545666554 112345567
Q ss_pred CCccccEEEEEe-CCe
Q psy160 258 SIKTFPALVYFR-NGN 272 (346)
Q Consensus 258 ~i~~~Pti~~~~-~g~ 272 (346)
++.++|+.+++. +|+
T Consensus 102 ~v~~~P~~~vid~~G~ 117 (126)
T cd03012 102 GNQYWPALYLIDPTGN 117 (126)
T ss_pred CCCcCCeEEEECCCCc
Confidence 778888888884 565
No 193
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.36 E-value=2e-06 Score=71.59 Aligned_cols=70 Identities=16% Similarity=0.256 Sum_probs=50.6
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--------------------------cChhhhhhCCCcc
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--------------------------QDPQLAKRYSIKT 261 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--------------------------~~~~~~~~~~i~~ 261 (346)
.+++++|.||++||++|+.+.|.+.++++. ++.+..+ .+..+.+.|++.+
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~ 137 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG 137 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence 467999999999999999999999988764 1222211 2345677889999
Q ss_pred ccEEEEE-eCCeEE-EeecCcc
Q psy160 262 FPALVYF-RNGNPL-IFEGENK 281 (346)
Q Consensus 262 ~Pti~~~-~~g~~~-~y~g~~~ 281 (346)
+|+.+++ ++|+.. .+.|..+
T Consensus 138 ~P~~~~id~~G~i~~~~~G~~~ 159 (173)
T TIGR00385 138 APETFLVDGNGVILYRHAGPLN 159 (173)
T ss_pred CCeEEEEcCCceEEEEEeccCC
Confidence 9966655 688743 4567654
No 194
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.32 E-value=1.8e-06 Score=90.70 Aligned_cols=74 Identities=19% Similarity=0.402 Sum_probs=58.7
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEc------------------------------ChhhhhhC
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ------------------------------DPQLAKRY 257 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~------------------------------~~~~~~~~ 257 (346)
..++++|.|||+||++|+...|.++++.+++++.++.++.+. +..+.+.|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 368999999999999999999999999999976456665541 22466789
Q ss_pred CCccccEEEEE-eCCeEE-EeecCcc
Q psy160 258 SIKTFPALVYF-RNGNPL-IFEGENK 281 (346)
Q Consensus 258 ~i~~~Pti~~~-~~g~~~-~y~g~~~ 281 (346)
+|.++|+++++ ++|+.+ ++.|...
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~ 524 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGH 524 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccC
Confidence 99999999999 688754 4566543
No 195
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.31 E-value=7.6e-06 Score=63.12 Aligned_cols=90 Identities=18% Similarity=0.317 Sum_probs=63.0
Q ss_pred HHHHHhcCCcEEEEEECCCChhHHHHHHH-H--HHHHhhccCCCcEEEEeC-----ChhhHHhhCCCCcceEEEEec--C
Q psy160 97 LDKLLEENEFVTVFFYETDHKDSVKVLER-L--EKIDGETDNMDITFVKMA-----DPRYARKWGVTKLPAVVYFRH--R 166 (346)
Q Consensus 97 ~~~~~~~~~~~lv~F~~~~C~~c~~~~~~-~--~~~a~~~~~~~i~~~~~~-----~~~l~~~~~i~~~Ptl~~~~~--g 166 (346)
++...+++++++|+|+++||+.|+.+... | .++.+.++. +..+...| ...++..|++.++|++.++.. |
T Consensus 10 ~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g 88 (114)
T cd02958 10 KQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTG 88 (114)
T ss_pred HHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccC
Confidence 33444567899999999999999998764 3 334444433 24444444 447899999999999999974 5
Q ss_pred C-cceecCCcchhHHHHHHHhhc
Q psy160 167 F-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 167 ~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
+ .....|..+.+ +++..+++.
T Consensus 89 ~~l~~~~G~~~~~-~f~~~L~~~ 110 (114)
T cd02958 89 EVLKVWSGNITPE-DLLSQLIEF 110 (114)
T ss_pred cEeEEEcCCCCHH-HHHHHHHHH
Confidence 5 44578888744 777766653
No 196
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.28 E-value=2.2e-06 Score=81.77 Aligned_cols=98 Identities=18% Similarity=0.255 Sum_probs=72.3
Q ss_pred eecCHH-HHHHHHhcCC--cEEEEEECCCChhHHHHHHH-HHHHHhhccCCCcEEEEeC-------ChhhHHhhCCCCcc
Q psy160 90 EEVNRR-MLDKLLEENE--FVTVFFYETDHKDSVKVLER-LEKIDGETDNMDITFVKMA-------DPRYARKWGVTKLP 158 (346)
Q Consensus 90 ~~l~~~-~~~~~~~~~~--~~lv~F~~~~C~~c~~~~~~-~~~~a~~~~~~~i~~~~~~-------~~~l~~~~~i~~~P 158 (346)
..++.. .+++.+.+++ ++++.|||+||-.||.+.+. +.+.....+-.++...+.| ..++-++||+-+.|
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P 536 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVP 536 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence 445544 8889888876 99999999999999988875 3333333333446666665 45678899999999
Q ss_pred eEEEEe-cCC-cceecCCcchhHHHHHHHhhc
Q psy160 159 AVVYFR-HRF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 159 tl~~~~-~g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
++++|. +|+ +..-.|-++ ++.+++++++.
T Consensus 537 ~~~ff~~~g~e~~~l~gf~~-a~~~~~~l~~~ 567 (569)
T COG4232 537 TYLFFGPQGSEPEILTGFLT-ADAFLEHLERA 567 (569)
T ss_pred EEEEECCCCCcCcCCcceec-HHHHHHHHHHh
Confidence 999998 454 455778877 44888888764
No 197
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.28 E-value=3.6e-06 Score=59.85 Aligned_cols=73 Identities=21% Similarity=0.505 Sum_probs=54.0
Q ss_pred eecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcCChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHHHHh
Q psy160 2 YINDENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTWLT 78 (346)
Q Consensus 2 ~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~~i~ 78 (346)
..++++|++|..+...+++++..++ ..+.+.++.+.+-+.+|||.+.|++++ ||. +.|.|...+.+++.+||+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~~~ygv~~vPalvI--ng~-~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEIEKYGVMSVPALVI--NGK-VVFVGRVPSKEELKELLE 76 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHHHHTT-SSSSEEEE--TTE-EEEESS--HHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHHHHcCCCCCCEEEE--CCE-EEEEecCCCHHHHHHHhC
Confidence 4478899999999999999988874 456677777766669999999999966 554 567885444467877764
No 198
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.28 E-value=6e-06 Score=69.77 Aligned_cols=83 Identities=13% Similarity=0.133 Sum_probs=56.9
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---------------------ChhhHHhhCCCCcceEE
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---------------------DPRYARKWGVTKLPAVV 161 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---------------------~~~l~~~~~i~~~Ptl~ 161 (346)
.+++++|.|+++||+.|++..|.+.++.+.. +.++.++..+ ..++++.|++...|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 5578999999999999999999999988654 3334444311 34677899999999888
Q ss_pred EEecCCcceecCCcchhHHHHHHHh
Q psy160 162 YFRHRFPSIYRGDLSEEEEVLQWLI 186 (346)
Q Consensus 162 ~~~~g~~~~y~g~~~~~~~i~~fi~ 186 (346)
++.+...+.+.|.....+.+.+.++
T Consensus 152 lID~~G~I~~~g~~~~~~~le~ll~ 176 (189)
T TIGR02661 152 LLDQDGKIRAKGLTNTREHLESLLE 176 (189)
T ss_pred EECCCCeEEEccCCCCHHHHHHHHH
Confidence 8754334455565433334444443
No 199
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.28 E-value=4.3e-06 Score=65.32 Aligned_cols=68 Identities=12% Similarity=0.216 Sum_probs=44.2
Q ss_pred HHHHHhccceEEEEEEcCCChhhHHHHHHHH---HHHhhcCcCceEEEEE----cChhhhhhCCCccccEEEEEe-CCe
Q psy160 202 LETMVEETQYLAVYFYKLNCNICDQILEGLE---KVDDECDIYGIHMVKI----QDPQLAKRYSIKTFPALVYFR-NGN 272 (346)
Q Consensus 202 ~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~---~la~~~~~~~i~~~~i----~~~~~~~~~~i~~~Pti~~~~-~g~ 272 (346)
++...+++++++|.|+++||++|+.|...+- ++.+.++. ++..+.+ .+.... ..+ .++||++++. +|+
T Consensus 16 l~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~-~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~~g~ 91 (130)
T cd02960 16 LYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE-DFIMLNLVHETTDKNLS-PDG-QYVPRIMFVDPSLT 91 (130)
T ss_pred HHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh-CeEEEEEEeccCCCCcC-ccC-cccCeEEEECCCCC
Confidence 3445567899999999999999999987653 44444432 4444444 111121 233 5799999995 554
No 200
>smart00594 UAS UAS domain.
Probab=98.28 E-value=9.9e-06 Score=63.31 Aligned_cols=86 Identities=15% Similarity=0.302 Sum_probs=59.8
Q ss_pred HHHHhcCCcEEEEEECCCChhHHHHHHHH---HHHHhhccCCCcEEEEeC-----ChhhHHhhCCCCcceEEEEec-C-C
Q psy160 98 DKLLEENEFVTVFFYETDHKDSVKVLERL---EKIDGETDNMDITFVKMA-----DPRYARKWGVTKLPAVVYFRH-R-F 167 (346)
Q Consensus 98 ~~~~~~~~~~lv~F~~~~C~~c~~~~~~~---~~~a~~~~~~~i~~~~~~-----~~~l~~~~~i~~~Ptl~~~~~-g-~ 167 (346)
+...++++..+|+|+++||+.|..+.... .++.+.++. ++.+..+| ..+++.+|+++++|++.++.. | +
T Consensus 21 ~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~ 99 (122)
T smart00594 21 QEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQ 99 (122)
T ss_pred HHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCc
Confidence 34445668999999999999999888652 233334433 35554443 557999999999999999964 3 1
Q ss_pred -----cceecCCcchhHHHHHHH
Q psy160 168 -----PSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 168 -----~~~y~g~~~~~~~i~~fi 185 (346)
.....|..+.+ +++.++
T Consensus 100 ~~~~~~~~~~G~~~~~-~l~~~l 121 (122)
T smart00594 100 RVIEWVGVVEGEISPE-ELMTFL 121 (122)
T ss_pred eeEEEeccccCCCCHH-HHHHhh
Confidence 22467888744 777765
No 201
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.26 E-value=1.4e-05 Score=59.63 Aligned_cols=89 Identities=25% Similarity=0.468 Sum_probs=72.7
Q ss_pred CHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEecC--Ccce
Q psy160 93 NRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHR--FPSI 170 (346)
Q Consensus 93 ~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~g--~~~~ 170 (346)
+.+.++.++..++.++|.|+.++++ .....|.++|..++. .+.|+.+.+.+++.++++. .|++.+|++. .+..
T Consensus 6 s~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~-~~~F~~~~~~~~~~~~~~~-~~~i~l~~~~~~~~~~ 80 (97)
T cd02981 6 SKEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRD-DYGFGHTSDKEVAKKLKVK-PGSVVLFKPFEEEPVE 80 (97)
T ss_pred CHHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhccc-CCeEEEEChHHHHHHcCCC-CCceEEeCCcccCCcc
Confidence 3566777888889999999998877 567789999998865 3899999999999998876 4899999863 3677
Q ss_pred ecCCcchhHHHHHHHhh
Q psy160 171 YRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 171 y~g~~~~~~~i~~fi~~ 187 (346)
|+|..+ .++|.+|+..
T Consensus 81 y~g~~~-~~~l~~fi~~ 96 (97)
T cd02981 81 YDGEFT-EESLVEFIKD 96 (97)
T ss_pred CCCCCC-HHHHHHHHHh
Confidence 999887 4589999875
No 202
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.25 E-value=7.2e-06 Score=67.88 Aligned_cols=79 Identities=8% Similarity=0.102 Sum_probs=56.6
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC--------------ChhhHHhhCC--CCcceEEEEe-cCCcc-
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA--------------DPRYARKWGV--TKLPAVVYFR-HRFPS- 169 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~--------------~~~l~~~~~i--~~~Ptl~~~~-~g~~~- 169 (346)
+|.||++||++|++..|.+++++++++ ..+..+.+| ...+...|++ .++|+.+++. +|+..
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g-~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC-CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 788999999999999999999999863 222222222 2336678995 6999999995 46642
Q ss_pred -eecCCcchhHHHHHHHhhc
Q psy160 170 -IYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 170 -~y~g~~~~~~~i~~fi~~~ 188 (346)
.+.|..+ ++++.+.+.+.
T Consensus 152 ~~~~G~~~-~~~L~~~I~~l 170 (181)
T PRK13728 152 PLLQGATD-AAGFMARMDTV 170 (181)
T ss_pred EEEECCCC-HHHHHHHHHHH
Confidence 4889887 43676666554
No 203
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.23 E-value=5.1e-06 Score=60.01 Aligned_cols=69 Identities=14% Similarity=0.181 Sum_probs=46.1
Q ss_pred HHHHHHHhcCCcEEEEEECCCChhHHHHHHHH---HHHHhhccCCCcEEEEeC--ChhhHHhhCCCCcceEEEEe
Q psy160 95 RMLDKLLEENEFVTVFFYETDHKDSVKVLERL---EKIDGETDNMDITFVKMA--DPRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 95 ~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~---~~~a~~~~~~~i~~~~~~--~~~l~~~~~i~~~Ptl~~~~ 164 (346)
+.+.+..+++++++|.|+++||+.|+.+...+ .++.+.+. .++..+.+| ..+--.++...++|+++++.
T Consensus 8 ~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~~~~~~~~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 8 EALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVDDEDPNAQFDRQGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETTTHHHHHHHHHCSSSEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcCCCChhHHhCCccCCEEEEeC
Confidence 44555667889999999999999999998776 33333233 236666665 22211133237799999985
No 204
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.22 E-value=6.5e-06 Score=66.41 Aligned_cols=67 Identities=21% Similarity=0.421 Sum_probs=52.2
Q ss_pred ccceEEEEEEcC-CChhhHHHHHHHHHHHhhcCcCceEEEEE------------------------cChhhhhhCCCc--
Q psy160 208 ETQYLAVYFYKL-NCNICDQILEGLEKVDDECDIYGIHMVKI------------------------QDPQLAKRYSIK-- 260 (346)
Q Consensus 208 ~~~~~lv~F~~~-~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------------------~~~~~~~~~~i~-- 260 (346)
..++++|.||+. ||++|....|.+.++.+.++..++.++.+ .+..+.+.|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 457899999999 99999999999999988876545555544 234678888988
Q ss_pred -------cccEEEEE-eCCeEE
Q psy160 261 -------TFPALVYF-RNGNPL 274 (346)
Q Consensus 261 -------~~Pti~~~-~~g~~~ 274 (346)
++|+++++ ++|+.+
T Consensus 107 ~~~~~~~~~P~~~lId~~G~V~ 128 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGKVV 128 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSBEE
T ss_pred cccccCCeecEEEEEECCCEEE
Confidence 99998777 566643
No 205
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.21 E-value=5.8e-06 Score=68.45 Aligned_cols=74 Identities=11% Similarity=0.274 Sum_probs=52.3
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEE--cC------------C--hHHHHhcCC--CCCCeEEEEe-CCcee
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVK--IS------------D--TEAAAKYNI--INLPSLVYFR-KQVPL 61 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~--~~------------~--~~~c~~~~i--~~~Ptl~~f~-~~~~~ 61 (346)
|.||++||++|++.+|.+.++++.+ |+.++. +| + ..+...|++ .++|+.++.. +|...
T Consensus 74 V~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 74 VLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 5799999999999999999999986 333322 21 1 236668885 6999999986 55542
Q ss_pred --eecCCCCCHHHHHHHHh
Q psy160 62 --LYDGDLFDEEKILTWLT 78 (346)
Q Consensus 62 --~y~G~~~~~~~i~~~i~ 78 (346)
.+.|..+. +++.+.+.
T Consensus 151 ~~~~~G~~~~-~~L~~~I~ 168 (181)
T PRK13728 151 LPLLQGATDA-AGFMARMD 168 (181)
T ss_pred EEEEECCCCH-HHHHHHHH
Confidence 57897765 35555444
No 206
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.18 E-value=1.1e-05 Score=62.16 Aligned_cols=78 Identities=13% Similarity=0.250 Sum_probs=55.8
Q ss_pred HHHHhccceEEEEEEcCCChhhHHHHH-HHH--HHHhhcCcCceEEEEE-----cChhhhhhCCCccccEEEEEe--CCe
Q psy160 203 ETMVEETQYLAVYFYKLNCNICDQILE-GLE--KVDDECDIYGIHMVKI-----QDPQLAKRYSIKTFPALVYFR--NGN 272 (346)
Q Consensus 203 ~~~~~~~~~~lv~F~~~~c~~c~~~~~-~~~--~la~~~~~~~i~~~~i-----~~~~~~~~~~i~~~Pti~~~~--~g~ 272 (346)
+...+++++++|+|+++||.+|+.+.. .|. ++.+.++. +..+..+ +...++..|++.++|+++++. +|+
T Consensus 11 ~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~ 89 (114)
T cd02958 11 QEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGE 89 (114)
T ss_pred HHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCc
Confidence 334557899999999999999999865 343 45555553 4444444 345789999999999999996 466
Q ss_pred EE-EeecCcc
Q psy160 273 PL-IFEGENK 281 (346)
Q Consensus 273 ~~-~y~g~~~ 281 (346)
.+ +..|..+
T Consensus 90 ~l~~~~G~~~ 99 (114)
T cd02958 90 VLKVWSGNIT 99 (114)
T ss_pred EeEEEcCCCC
Confidence 43 4566665
No 207
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.14 E-value=7.9e-05 Score=73.00 Aligned_cols=161 Identities=16% Similarity=0.223 Sum_probs=108.9
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEecCC--cceecCCcchhHHHH
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRF--PSIYRGDLSEEEEVL 182 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~g~--~~~y~g~~~~~~~i~ 182 (346)
+..++.|.. .|+.|.++...+++++..-.+ |.+...+. +....|++.+..+|+ .++|.|-..-. ++-
T Consensus 20 ~v~~~~~~~-~~~~~~~~~~~~~~~~~~s~k--i~~~~~~~-------~~~~~p~~~~~~~~~~~~i~f~g~P~g~-Ef~ 88 (515)
T TIGR03140 20 PVTLVLSAG-SHEKSKELLELLDEIASLSDK--ISLTQNTA-------DTLRKPSFTILRDGADTGIRFAGIPGGH-EFT 88 (515)
T ss_pred CEEEEEEeC-CCchhHHHHHHHHHHHHhCCC--eEEEEecC-------CcCCCCeEEEecCCcccceEEEecCCcH-HHH
Confidence 444666666 688898888777777765333 54433221 123569999987765 57898876644 777
Q ss_pred HHHhhccc-cCcEEEccHHHHHHHHhccce-EEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhC
Q psy160 183 QWLITQKT-EDRIELITRVMLETMVEETQY-LAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRY 257 (346)
Q Consensus 183 ~fi~~~~~-~~~v~~l~~~~~~~~~~~~~~-~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~ 257 (346)
.|+..-.. ...-..++++..+.+.+=+++ -+-.|.++.|++|......+.+++.... ++..-.+ ..++++++|
T Consensus 89 s~i~~i~~~~~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~id~~~~~~~~~~~ 166 (515)
T TIGR03140 89 SLVLAILQVGGHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP--NISHTMIDGALFQDEVEAL 166 (515)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC--CceEEEEEchhCHHHHHhc
Confidence 77766332 112246677766666543344 4667999999999999999999987754 4554444 789999999
Q ss_pred CCccccEEEEEeCCeEEEeecCcc
Q psy160 258 SIKTFPALVYFRNGNPLIFEGENK 281 (346)
Q Consensus 258 ~i~~~Pti~~~~~g~~~~y~g~~~ 281 (346)
++.+.|++++ +|+. .+.|..+
T Consensus 167 ~v~~VP~~~i--~~~~-~~~g~~~ 187 (515)
T TIGR03140 167 GIQGVPAVFL--NGEE-FHNGRMD 187 (515)
T ss_pred CCcccCEEEE--CCcE-EEecCCC
Confidence 9999999976 4543 3666554
No 208
>smart00594 UAS UAS domain.
Probab=98.12 E-value=1.7e-05 Score=61.91 Aligned_cols=66 Identities=9% Similarity=0.185 Sum_probs=48.7
Q ss_pred HHHHhccceEEEEEEcCCChhhHHHHHHH-H--HHHhhcCcCceEEEEE-----cChhhhhhCCCccccEEEEEe
Q psy160 203 ETMVEETQYLAVYFYKLNCNICDQILEGL-E--KVDDECDIYGIHMVKI-----QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 203 ~~~~~~~~~~lv~F~~~~c~~c~~~~~~~-~--~la~~~~~~~i~~~~i-----~~~~~~~~~~i~~~Pti~~~~ 269 (346)
+...++.|.++|+|+++||.+|..+.... . ++.+.++. ++.+..+ +...++..|+++++|+++++.
T Consensus 21 ~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~ 94 (122)
T smart00594 21 QEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVD 94 (122)
T ss_pred HHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEe
Confidence 33455678999999999999999876543 2 44444543 4555444 456789999999999999994
No 209
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.11 E-value=1.5e-05 Score=67.40 Aligned_cols=71 Identities=13% Similarity=0.329 Sum_probs=52.1
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---------------------cChhhhhhCCCccccEEE
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---------------------QDPQLAKRYSIKTFPALV 266 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---------------------~~~~~~~~~~i~~~Pti~ 266 (346)
.+++++|.||++||++|+...|.+.++.+... .++.++.. ...++++.|++.+.|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~-~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE-TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 45789999999999999999999999876643 24444331 234677889999999887
Q ss_pred EEe-CCeEEEeecCc
Q psy160 267 YFR-NGNPLIFEGEN 280 (346)
Q Consensus 267 ~~~-~g~~~~y~g~~ 280 (346)
++. +|+ +.+.|..
T Consensus 152 lID~~G~-I~~~g~~ 165 (189)
T TIGR02661 152 LLDQDGK-IRAKGLT 165 (189)
T ss_pred EECCCCe-EEEccCC
Confidence 775 565 4566653
No 210
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.10 E-value=2.4e-05 Score=55.62 Aligned_cols=73 Identities=18% Similarity=0.343 Sum_probs=53.6
Q ss_pred EEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHHHHh
Q psy160 110 FFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLI 186 (346)
Q Consensus 110 ~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~ 186 (346)
.+++++|++|..+...+++++..++ ..+.+..+....-..+|||.+.|++++ +|+ ..+.|...+.+++.+|++
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~~~ygv~~vPalvI--ng~-~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEIEKYGVMSVPALVI--NGK-VVFVGRVPSKEELKELLE 76 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHHHHTT-SSSSEEEE--TTE-EEEESS--HHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHHHHcCCCCCCEEEE--CCE-EEEEecCCCHHHHHHHhC
Confidence 3478889999999999999998873 446666665555559999999999965 554 678896555668888764
No 211
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.10 E-value=2.3e-05 Score=58.43 Aligned_cols=88 Identities=20% Similarity=0.356 Sum_probs=69.7
Q ss_pred cHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEcChhhhhhCCCccccEEEEEeC--CeEEE
Q psy160 198 TRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRN--GNPLI 275 (346)
Q Consensus 198 ~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~i~~~Pti~~~~~--g~~~~ 275 (346)
+.+.+++++..+++++|.|+.++++ .....|.++|..+++ .+.|+.+.+.++++++++.. |++++|++ ..+..
T Consensus 6 s~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~-~~~F~~~~~~~~~~~~~~~~-~~i~l~~~~~~~~~~ 80 (97)
T cd02981 6 SKEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRD-DYGFGHTSDKEVAKKLKVKP-GSVVLFKPFEEEPVE 80 (97)
T ss_pred CHHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhccc-CCeEEEEChHHHHHHcCCCC-CceEEeCCcccCCcc
Confidence 4466777888889999999998876 567899999999986 78999998889999888764 99999976 34677
Q ss_pred eecCccccccchhhhhhh
Q psy160 276 FEGENKILKGTYIGTYIS 293 (346)
Q Consensus 276 y~g~~~~~~~~~~~~~i~ 293 (346)
|.|..+.+ . |..|+.
T Consensus 81 y~g~~~~~--~-l~~fi~ 95 (97)
T cd02981 81 YDGEFTEE--S-LVEFIK 95 (97)
T ss_pred CCCCCCHH--H-HHHHHH
Confidence 99987522 2 666664
No 212
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.07 E-value=1.9e-05 Score=63.72 Aligned_cols=65 Identities=20% Similarity=0.267 Sum_probs=51.6
Q ss_pred cCCcEEEEEECC-CChhHHHHHHHHHHHHhhccCCCcEEEEe------------------------CChhhHHhhCCC--
Q psy160 103 ENEFVTVFFYET-DHKDSVKVLERLEKIDGETDNMDITFVKM------------------------ADPRYARKWGVT-- 155 (346)
Q Consensus 103 ~~~~~lv~F~~~-~C~~c~~~~~~~~~~a~~~~~~~i~~~~~------------------------~~~~l~~~~~i~-- 155 (346)
++++++|.||+. ||++|...+|.+.++++.++..++.++-+ ....+.++|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 567899999999 99999999999999988875544544432 145789999998
Q ss_pred -------CcceEEEEec-CC
Q psy160 156 -------KLPAVVYFRH-RF 167 (346)
Q Consensus 156 -------~~Ptl~~~~~-g~ 167 (346)
++|+++++.. |+
T Consensus 107 ~~~~~~~~~P~~~lId~~G~ 126 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGK 126 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSB
T ss_pred cccccCCeecEEEEEECCCE
Confidence 9999888764 55
No 213
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.05 E-value=2.1e-05 Score=61.47 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHH---HHHhhccCCCcEEEEeC----ChhhHHhhCCCCcceEEEEec-
Q psy160 94 RRMLDKLLEENEFVTVFFYETDHKDSVKVLERLE---KIDGETDNMDITFVKMA----DPRYARKWGVTKLPAVVYFRH- 165 (346)
Q Consensus 94 ~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~---~~a~~~~~~~i~~~~~~----~~~l~~~~~i~~~Ptl~~~~~- 165 (346)
++.++...+++++++|.|++.||++|+.+....- ++.+.+++ ++..+.++ +..+. ..+ .++||++|+..
T Consensus 13 eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~-~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~~ 89 (130)
T cd02960 13 EEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE-DFIMLNLVHETTDKNLS-PDG-QYVPRIMFVDPS 89 (130)
T ss_pred HHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh-CeEEEEEEeccCCCCcC-ccC-cccCeEEEECCC
Confidence 3445555667899999999999999999987642 23333322 24433433 11111 234 68999999964
Q ss_pred CC
Q psy160 166 RF 167 (346)
Q Consensus 166 g~ 167 (346)
|+
T Consensus 90 g~ 91 (130)
T cd02960 90 LT 91 (130)
T ss_pred CC
Confidence 44
No 214
>KOG2501|consensus
Probab=97.99 E-value=6.1e-06 Score=65.85 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=52.9
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCC----CcEEEEeC--------------------------ChhhHHhh
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNM----DITFVKMA--------------------------DPRYARKW 152 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~----~i~~~~~~--------------------------~~~l~~~~ 152 (346)
.++.+.++|.|.||++|+.|.|.+.+..+.++.. .|.|+..| ..+++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 4589999999999999999999999988888432 36666532 35688899
Q ss_pred CCCCcceEEEEec-CCcc
Q psy160 153 GVTKLPAVVYFRH-RFPS 169 (346)
Q Consensus 153 ~i~~~Ptl~~~~~-g~~~ 169 (346)
+|.+.|++++... |..+
T Consensus 112 ~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVV 129 (157)
T ss_pred ccCcCceeEEecCCCCEe
Confidence 9999999998864 5433
No 215
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.99 E-value=3e-05 Score=54.24 Aligned_cols=68 Identities=16% Similarity=0.092 Sum_probs=45.4
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-C----hhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHH
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-D----PRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVL 182 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~----~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~ 182 (346)
+.+|+++||++|++..+.+++. +..+..++++ + ..+++++++.++|++.+. |+. ..|. + .+.|.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~--~~g~-~-~~~i~ 70 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK-----GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI--IVGF-D-PEKLD 70 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC-----CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE--EeeC-C-HHHHH
Confidence 5789999999999998888652 2223333333 2 235678999999999985 432 5553 3 34777
Q ss_pred HHHh
Q psy160 183 QWLI 186 (346)
Q Consensus 183 ~fi~ 186 (346)
++++
T Consensus 71 ~~i~ 74 (74)
T TIGR02196 71 QLLE 74 (74)
T ss_pred HHhC
Confidence 7763
No 216
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.98 E-value=6.3e-05 Score=54.78 Aligned_cols=98 Identities=17% Similarity=0.334 Sum_probs=75.3
Q ss_pred eeecC-HHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCC-cEEEEeC---ChhhHHhhCCC----Ccc-
Q psy160 89 IEEVN-RRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMD-ITFVKMA---DPRYARKWGVT----KLP- 158 (346)
Q Consensus 89 v~~l~-~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~-i~~~~~~---~~~l~~~~~i~----~~P- 158 (346)
+..++ .++|.+++.....++|+|..+- ..-...+..+.++|+..++.+ +.++++. ..+||+++.|. .-|
T Consensus 3 ie~i~d~KdfKKLLRTr~NVLvLy~ks~-k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~ 81 (112)
T cd03067 3 IEDISDHKDFKKLLRTRNNVLVLYSKSA-KSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPV 81 (112)
T ss_pred cccccchHHHHHHHhhcCcEEEEEecch-hhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcc
Confidence 34454 5899999999999999998765 334456678999999987654 6666654 56899999998 445
Q ss_pred eEEEEecCC-cceecCCcchhHHHHHHHhhc
Q psy160 159 AVVYFRHRF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 159 tl~~~~~g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
+|.-|++|. ...|+...+.. +++.|+++.
T Consensus 82 ~LkHYKdG~fHkdYdR~~t~k-Smv~FlrDP 111 (112)
T cd03067 82 ELKHYKDGDFHTEYNRQLTFK-SMVAFLRDP 111 (112)
T ss_pred hhhcccCCCccccccchhhHH-HHHHHhhCC
Confidence 566788888 67799888855 999999864
No 217
>KOG2501|consensus
Probab=97.91 E-value=5.6e-06 Score=66.06 Aligned_cols=65 Identities=20% Similarity=0.454 Sum_probs=50.7
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcc----cCCeEEEcC--------------------------ChHHHHhcCCCCCC
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQ----YGIDMVKIS--------------------------DTEAAAKYNIINLP 50 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~----~~i~~~~~~--------------------------~~~~c~~~~i~~~P 50 (346)
++|.|.||++|++|.|.+.+..+.+++ ..|.|++.| -.+++.+|+|.+.|
T Consensus 38 lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~v~~iP 117 (157)
T KOG2501|consen 38 LYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYEVKGIP 117 (157)
T ss_pred EEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcccCcCc
Confidence 479999999999999999999999843 346777664 24788899999999
Q ss_pred eEEEEe-CCceeeecC
Q psy160 51 SLVYFR-KQVPLLYDG 65 (346)
Q Consensus 51 tl~~f~-~~~~~~y~G 65 (346)
++++-. +|+.+.-.|
T Consensus 118 ~l~i~~~dG~~v~~d~ 133 (157)
T KOG2501|consen 118 ALVILKPDGTVVTEDA 133 (157)
T ss_pred eeEEecCCCCEehHhh
Confidence 998865 565554333
No 218
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=97.91 E-value=7.6e-05 Score=58.16 Aligned_cols=69 Identities=20% Similarity=0.484 Sum_probs=52.5
Q ss_pred ccceEEEEEEcC-CChhhHHHHHHHHHHHhhcCcCceEEEEE------------------------cChhhhhhCCCc--
Q psy160 208 ETQYLAVYFYKL-NCNICDQILEGLEKVDDECDIYGIHMVKI------------------------QDPQLAKRYSIK-- 260 (346)
Q Consensus 208 ~~~~~lv~F~~~-~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------------------~~~~~~~~~~i~-- 260 (346)
.+++++|.||+. ||++|....+.+.++..+++..++.++.+ .+..+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 457999999999 99999999999999999887556777766 234566677777
Q ss_pred ----cccEEEEEeCCeEEEe
Q psy160 261 ----TFPALVYFRNGNPLIF 276 (346)
Q Consensus 261 ----~~Pti~~~~~g~~~~y 276 (346)
.+|++.++..+..+.|
T Consensus 104 ~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTSEESEEEEEEETTSBEEE
T ss_pred cCCceEeEEEEECCCCEEEe
Confidence 7788777765444444
No 219
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.90 E-value=1.2e-05 Score=56.37 Aligned_cols=63 Identities=25% Similarity=0.309 Sum_probs=43.3
Q ss_pred eecCCCChhhHHHHHHHHHHHhhhcccCCeEEEc--C-Ch----HHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHH
Q psy160 2 YINDENCPECDDILEELEHIDGDADQYGIDMVKI--S-DT----EAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKIL 74 (346)
Q Consensus 2 ~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~-~~----~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~ 74 (346)
.|+++||++|+++.+.|++ .++.+..+ + +. +++..+++.+.|+++++ |.. ..| .+. +.|.
T Consensus 4 lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~--~~g-~~~-~~i~ 70 (74)
T TIGR02196 4 VYTTPWCPPCKKAKEYLTS-------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI--IVG-FDP-EKLD 70 (74)
T ss_pred EEcCCCChhHHHHHHHHHH-------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE--Eee-CCH-HHHH
Confidence 6899999999999877764 34455443 3 22 36678999999999885 433 455 333 4777
Q ss_pred HHH
Q psy160 75 TWL 77 (346)
Q Consensus 75 ~~i 77 (346)
+++
T Consensus 71 ~~i 73 (74)
T TIGR02196 71 QLL 73 (74)
T ss_pred HHh
Confidence 775
No 220
>KOG0911|consensus
Probab=97.90 E-value=0.00013 Score=61.48 Aligned_cols=174 Identities=14% Similarity=0.230 Sum_probs=106.3
Q ss_pred HHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCCcc-
Q psy160 94 RRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFPS- 169 (346)
Q Consensus 94 ~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~~- 169 (346)
.+.| +.++.+..++.|+++||..|+.+...+..+++.. .+..+++.+ .+.++..+.+...|...++..|+..
T Consensus 9 ~~~f--~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~ 84 (227)
T KOG0911|consen 9 QEQF--LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVD 84 (227)
T ss_pred HHHH--HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhh--hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhh
Confidence 4555 5556678899999999999999999999999987 347777765 7789999999999999999877633
Q ss_pred eecCCcchh-HHHHHHHhhccc----c---CcEEEc---cHHHHHHHHh---ccceEEEEEE-----cCCChhhHHHHHH
Q psy160 170 IYRGDLSEE-EEVLQWLITQKT----E---DRIELI---TRVMLETMVE---ETQYLAVYFY-----KLNCNICDQILEG 230 (346)
Q Consensus 170 ~y~g~~~~~-~~i~~fi~~~~~----~---~~v~~l---~~~~~~~~~~---~~~~~lv~F~-----~~~c~~c~~~~~~ 230 (346)
+..|..... ....+.+..... . ..+... +...++..+. +.++ ++.|- .|.||..+++...
T Consensus 85 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~lv~a~~-v~lFmKG~p~~P~CGFS~~~v~i 163 (227)
T KOG0911|consen 85 RLSGADPPFLVSKVEKLAESGSASLGMGLSTTIRETQTTNETDLDNRLEKLVKAKP-VMLFMKGTPEEPKCGFSRQLVGI 163 (227)
T ss_pred hhhccCcHHHHHHHHHhhhhcccccCCCCCcchhcccccchhhHHHHHHHhcccCe-EEEEecCCCCcccccccHHHHHH
Confidence 344433211 012222222111 0 011110 0001222222 2223 34454 4689988888777
Q ss_pred HHHHHhhcCcCceEEEEE-cChhhhhhCC-CccccEE-EEEeCCeEEEeecCc
Q psy160 231 LEKVDDECDIYGIHMVKI-QDPQLAKRYS-IKTFPAL-VYFRNGNPLIFEGEN 280 (346)
Q Consensus 231 ~~~la~~~~~~~i~~~~i-~~~~~~~~~~-i~~~Pti-~~~~~g~~~~y~g~~ 280 (346)
+....- ++.+..| .+.++.+..+ .+..||+ -+|-+|+ |.|+.
T Consensus 164 L~~~nV-----~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GE---FiGGl 208 (227)
T KOG0911|consen 164 LQSHNV-----NYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGE---FIGGL 208 (227)
T ss_pred HHHcCC-----CeeEEeccCCHHHHHHhhhhcCCCCccceeECCE---eccCc
Confidence 776632 3555666 6777755443 2456776 5677776 44654
No 221
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=97.89 E-value=5.3e-05 Score=59.03 Aligned_cols=68 Identities=19% Similarity=0.265 Sum_probs=50.2
Q ss_pred cCCcEEEEEECC-CChhHHHHHHHHHHHHhhccCCCcEEEEe--C----------------------ChhhHHhhCCC--
Q psy160 103 ENEFVTVFFYET-DHKDSVKVLERLEKIDGETDNMDITFVKM--A----------------------DPRYARKWGVT-- 155 (346)
Q Consensus 103 ~~~~~lv~F~~~-~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~----------------------~~~l~~~~~i~-- 155 (346)
.+++++|.||+. ||++|...++.+.++..+++..++.++.+ + ...+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 458899999999 99999999999999999987555665543 2 44566677776
Q ss_pred ----CcceEEEEecCCcce
Q psy160 156 ----KLPAVVYFRHRFPSI 170 (346)
Q Consensus 156 ----~~Ptl~~~~~g~~~~ 170 (346)
.+|++.++..+..+.
T Consensus 104 ~~~~~~p~~~lid~~g~I~ 122 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIR 122 (124)
T ss_dssp TTSEESEEEEEEETTSBEE
T ss_pred cCCceEeEEEEECCCCEEE
Confidence 667777766543333
No 222
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.89 E-value=7.2e-05 Score=62.09 Aligned_cols=71 Identities=24% Similarity=0.461 Sum_probs=54.1
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c------------------------------Chhhhh
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q------------------------------DPQLAK 255 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~------------------------------~~~~~~ 255 (346)
.+++++|.||++||+.|....+.+.++.+++.+.++.++.+ + +..+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 45789999999999999999999999999987546776666 1 123456
Q ss_pred hCCCccccEEEEEeCCeEEEeec
Q psy160 256 RYSIKTFPALVYFRNGNPLIFEG 278 (346)
Q Consensus 256 ~~~i~~~Pti~~~~~g~~~~y~g 278 (346)
.|++...|+++++..+..+.|.+
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~ 126 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRG 126 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEee
Confidence 77888899999996433455654
No 223
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=97.88 E-value=0.00011 Score=65.13 Aligned_cols=81 Identities=19% Similarity=0.367 Sum_probs=60.3
Q ss_pred CcEEEc-cHHHHHHHHhc---cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--cChhhhhhCCCccccEE
Q psy160 192 DRIELI-TRVMLETMVEE---TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--QDPQLAKRYSIKTFPAL 265 (346)
Q Consensus 192 ~~v~~l-~~~~~~~~~~~---~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~~~~~~~~~~i~~~Pti 265 (346)
+.|..+ +.+.|-+.+.. ...++|.||.+.+..|..|...|..||.+|. .++|++| ..-.+...|.+...|||
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp--~vKFvkI~a~~~~~~~~f~~~~LPtl 202 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP--EVKFVKIRASKCPASENFPDKNLPTL 202 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T--TSEEEEEEECGCCTTTTS-TTC-SEE
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC--ceEEEEEehhccCcccCCcccCCCEE
Confidence 456666 45777776543 3468899999999999999999999999987 6999998 22237889999999999
Q ss_pred EEEeCCeEE
Q psy160 266 VYFRNGNPL 274 (346)
Q Consensus 266 ~~~~~g~~~ 274 (346)
++|++|..+
T Consensus 203 lvYk~G~l~ 211 (265)
T PF02114_consen 203 LVYKNGDLI 211 (265)
T ss_dssp EEEETTEEE
T ss_pred EEEECCEEE
Confidence 999999743
No 224
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.85 E-value=4.5e-05 Score=57.99 Aligned_cols=64 Identities=23% Similarity=0.527 Sum_probs=53.7
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c--ChhhhhhCC--CccccEEEEEeCCeE
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q--DPQLAKRYS--IKTFPALVYFRNGNP 273 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~--~~~~~~~~~--i~~~Pti~~~~~g~~ 273 (346)
.+++++.||++||++|+.+.|.+.++++.+.. .+.+..+ . ...+...++ +..+|+++++.++..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE 101 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch
Confidence 66888999999999999999999999999875 4555555 2 568888999 899999998888754
No 225
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.83 E-value=2.3e-05 Score=74.96 Aligned_cols=77 Identities=17% Similarity=0.290 Sum_probs=55.2
Q ss_pred EccHH-HHHHHHhccc--eEEEEEEcCCChhhHHHHHHHH-HHHhhcCcCceEEEEE-------cChhhhhhCCCccccE
Q psy160 196 LITRV-MLETMVEETQ--YLAVYFYKLNCNICDQILEGLE-KVDDECDIYGIHMVKI-------QDPQLAKRYSIKTFPA 264 (346)
Q Consensus 196 ~l~~~-~~~~~~~~~~--~~lv~F~~~~c~~c~~~~~~~~-~la~~~~~~~i~~~~i-------~~~~~~~~~~i~~~Pt 264 (346)
.++.. .+++.+.+++ +++|+|||+||-.||.+.+..- +.....+-.++...+. ...++-++|++-+.|+
T Consensus 458 ~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~ 537 (569)
T COG4232 458 PISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPT 537 (569)
T ss_pred ccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCE
Confidence 34443 7888887766 9999999999999998877554 2222222225666655 2345678999999999
Q ss_pred EEEEe-CCe
Q psy160 265 LVYFR-NGN 272 (346)
Q Consensus 265 i~~~~-~g~ 272 (346)
+++|. +|+
T Consensus 538 ~~ff~~~g~ 546 (569)
T COG4232 538 YLFFGPQGS 546 (569)
T ss_pred EEEECCCCC
Confidence 99997 554
No 226
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00014 Score=57.47 Aligned_cols=92 Identities=14% Similarity=0.239 Sum_probs=60.2
Q ss_pred HHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHH---HhhccCCCcEEEE-------------------eCChhhHHhh
Q psy160 95 RMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKI---DGETDNMDITFVK-------------------MADPRYARKW 152 (346)
Q Consensus 95 ~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~---a~~~~~~~i~~~~-------------------~~~~~l~~~~ 152 (346)
++.+++...++..+++|-++.|..|.++....... .+.+.++ +.++. ....+|++.|
T Consensus 33 ~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h-f~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf 111 (182)
T COG2143 33 DDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH-FSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKF 111 (182)
T ss_pred HHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC-eEEEEEEeccCcceEeecCceeeeecHHHHHHHh
Confidence 33444445668899999999999999988764332 2222221 22222 2256899999
Q ss_pred CCCCcceEEEEec-CC-cceecCCcchhH--HHHHHHhh
Q psy160 153 GVTKLPAVVYFRH-RF-PSIYRGDLSEEE--EVLQWLIT 187 (346)
Q Consensus 153 ~i~~~Ptl~~~~~-g~-~~~y~g~~~~~~--~i~~fi~~ 187 (346)
+|+++||+++|.. |+ .....|.+..++ .+++|+.+
T Consensus 112 ~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~ 150 (182)
T COG2143 112 AVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKYVAD 150 (182)
T ss_pred ccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHH
Confidence 9999999999975 56 334567766552 34555554
No 227
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.82 E-value=6.9e-05 Score=58.93 Aligned_cols=86 Identities=15% Similarity=0.336 Sum_probs=47.8
Q ss_pred ccHHHHHHHHh-ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-cChhhhhhC---CCccccEEEEEe-C
Q psy160 197 ITRVMLETMVE-ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQLAKRY---SIKTFPALVYFR-N 270 (346)
Q Consensus 197 l~~~~~~~~~~-~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~~~~~~---~i~~~Pti~~~~-~ 270 (346)
++.+....+.. ..+.-++.|..+|||+|....|.+.++++...+..+.+... +++++...| |..++|+++++. +
T Consensus 28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD 107 (129)
T ss_dssp --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC
Confidence 34444444332 33455666889999999999999999999864323444333 455555544 678899999995 5
Q ss_pred CeEEEeecCccc
Q psy160 271 GNPLIFEGENKI 282 (346)
Q Consensus 271 g~~~~y~g~~~~ 282 (346)
|+.+.-=|++..
T Consensus 108 ~~~lg~wgerP~ 119 (129)
T PF14595_consen 108 GKELGRWGERPK 119 (129)
T ss_dssp --EEEEEESS-H
T ss_pred CCEeEEEcCCCH
Confidence 676655666653
No 228
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.81 E-value=0.00049 Score=52.41 Aligned_cols=97 Identities=15% Similarity=0.341 Sum_probs=68.6
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEEC--CCChhHHHHHHHHHHHHhhc--cCCCcEEEEe--------CChhhHHhhCC-
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYE--TDHKDSVKVLERLEKIDGET--DNMDITFVKM--------ADPRYARKWGV- 154 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~--~~C~~c~~~~~~~~~~a~~~--~~~~i~~~~~--------~~~~l~~~~~i- 154 (346)
....|++-+|++++.+.+.+||.|=. |+-.. ..+|.++|++. ...++.++.+ ++.+|+++|+|
T Consensus 5 G~v~LD~~tFdKvi~kf~~~LVKFD~ayPyGeK----hd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ 80 (126)
T PF07912_consen 5 GCVPLDELTFDKVIPKFKYVLVKFDVAYPYGEK----HDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKID 80 (126)
T ss_dssp TSEEESTTHHHHHGGGSSEEEEEEEESS--CHH----HHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-S
T ss_pred ceeeccceehhheeccCceEEEEEeccCCCcch----HHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCC
Confidence 46778999999999999999999954 44333 44566666332 2334666654 28899999999
Q ss_pred -CCcceEEEEecCC--ccee--cCCcchhHHHHHHHhhcc
Q psy160 155 -TKLPAVVYFRHRF--PSIY--RGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 155 -~~~Ptl~~~~~g~--~~~y--~g~~~~~~~i~~fi~~~~ 189 (346)
..||.+.+|..+. ++.| +|+.+. ++|..|+.+++
T Consensus 81 ke~fPv~~LF~~~~~~pv~~p~~~~~t~-~~l~~fvk~~t 119 (126)
T PF07912_consen 81 KEDFPVIYLFVGDKEEPVRYPFDGDVTA-DNLQRFVKSNT 119 (126)
T ss_dssp CCC-SEEEEEESSTTSEEEE-TCS-S-H-HHHHHHHHHTS
T ss_pred cccCCEEEEecCCCCCCccCCccCCccH-HHHHHHHHhCC
Confidence 5789999999544 7888 888885 49999999875
No 229
>KOG1672|consensus
Probab=97.79 E-value=9.4e-05 Score=60.64 Aligned_cols=79 Identities=19% Similarity=0.367 Sum_probs=68.0
Q ss_pred ccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCeE
Q psy160 197 ITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273 (346)
Q Consensus 197 l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~ 273 (346)
-++.+|-+....+.-+++.||-|.-..|+-|...++.||+.+- ...|.++ ..|=++.+++|.-+|++++|++|+.
T Consensus 72 ~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~--eTrFikvnae~~PFlv~kL~IkVLP~v~l~k~g~~ 149 (211)
T KOG1672|consen 72 ASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV--ETRFIKVNAEKAPFLVTKLNIKVLPTVALFKNGKT 149 (211)
T ss_pred ccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcc--cceEEEEecccCceeeeeeeeeEeeeEEEEEcCEE
Confidence 3577887777777788899999999999999999999999976 5788888 5677899999999999999999987
Q ss_pred EEee
Q psy160 274 LIFE 277 (346)
Q Consensus 274 ~~y~ 277 (346)
+.|-
T Consensus 150 ~D~i 153 (211)
T KOG1672|consen 150 VDYV 153 (211)
T ss_pred EEEE
Confidence 7663
No 230
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.78 E-value=0.00011 Score=60.88 Aligned_cols=71 Identities=18% Similarity=0.327 Sum_probs=52.6
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC--------------------------------ChhhHH
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA--------------------------------DPRYAR 150 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~--------------------------------~~~l~~ 150 (346)
.+++++++|+++||+.|...++.+.++.+++.+.++.++.+. ...+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 557899999999999999999999999999864445544331 234567
Q ss_pred hhCCCCcceEEEEecCCcceecC
Q psy160 151 KWGVTKLPAVVYFRHRFPSIYRG 173 (346)
Q Consensus 151 ~~~i~~~Ptl~~~~~g~~~~y~g 173 (346)
.|++...|+++++..+..+.|.+
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~ 126 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRG 126 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEee
Confidence 88888889888886433344443
No 231
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.78 E-value=9.2e-05 Score=49.49 Aligned_cols=57 Identities=23% Similarity=0.374 Sum_probs=42.4
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhH---HhhCCCCcceEEEEecC
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYA---RKWGVTKLPAVVYFRHR 166 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~---~~~~i~~~Ptl~~~~~g 166 (346)
++.|+++||++|.++.+.+.++. ....++.++.++ ..... ..+++..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELA--LLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHH--hhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 47899999999999999999882 223346666554 22232 47899999999999876
No 232
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.78 E-value=7.7e-05 Score=56.69 Aligned_cols=65 Identities=20% Similarity=0.326 Sum_probs=52.2
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHhhccC-CCcEEEEeC--ChhhHHhhC--CCCcceEEEEecCCc
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKIDGETDN-MDITFVKMA--DPRYARKWG--VTKLPAVVYFRHRFP 168 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~-~~i~~~~~~--~~~l~~~~~--i~~~Ptl~~~~~g~~ 168 (346)
++++++.|+++||++|+.+.|.+.++++.+.. ..+..+.+. .+.+...++ +..+|++.++.++..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE 101 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch
Confidence 56788888999999999999999999999854 223333342 568899999 999999998887763
No 233
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.77 E-value=0.00024 Score=54.71 Aligned_cols=73 Identities=19% Similarity=0.287 Sum_probs=48.0
Q ss_pred HHHHHHHh----ccceEEEEEEc-------CCChhhHHHHHHHHHHHhhcCcCceEEEEE--------c--Chhhhh--h
Q psy160 200 VMLETMVE----ETQYLAVYFYK-------LNCNICDQILEGLEKVDDECDIYGIHMVKI--------Q--DPQLAK--R 256 (346)
Q Consensus 200 ~~~~~~~~----~~~~~lv~F~~-------~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--------~--~~~~~~--~ 256 (346)
+++.++++ ++++++|+|++ +||++|....|.++++-..... +..++.+ . +..+-+ +
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG~r~~Wkdp~n~fR~~p~ 84 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVGDRPEWKDPNNPFRTDPD 84 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE---HHHHC-TTSHHHH--C
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcCCHHHhCCCCCCceEcce
Confidence 44555443 45788999985 4999999999999988777553 5666555 2 223444 5
Q ss_pred CCCccccEEEEEeCCeE
Q psy160 257 YSIKTFPALVYFRNGNP 273 (346)
Q Consensus 257 ~~i~~~Pti~~~~~g~~ 273 (346)
++++++||++-+..++.
T Consensus 85 ~~l~~IPTLi~~~~~~r 101 (119)
T PF06110_consen 85 LKLKGIPTLIRWETGER 101 (119)
T ss_dssp C---SSSEEEECTSS-E
T ss_pred eeeeecceEEEECCCCc
Confidence 89999999999987643
No 234
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.76 E-value=0.00012 Score=48.93 Aligned_cols=57 Identities=32% Similarity=0.630 Sum_probs=43.1
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhh---hhCCCccccEEEEEeCC
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLA---KRYSIKTFPALVYFRNG 271 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~---~~~~i~~~Pti~~~~~g 271 (346)
++.|+++||++|..+.+.+.++ +... .++.+..+ ...... ..+++.+.|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLN-KGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhC-CCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4679999999999999999998 3323 26777776 223322 47889999999999876
No 235
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.74 E-value=0.0002 Score=61.55 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=59.8
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC------------ChhhHHhhCCCCcceEEEEecCC--cc
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA------------DPRYARKWGVTKLPAVVYFRHRF--PS 169 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~------------~~~l~~~~~i~~~Ptl~~~~~g~--~~ 169 (346)
++.-|++||.+.|++|..+.|.+..+++.+ +..+..+.+| +..+++++||..+|++++...+. ..
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~~ 198 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKWY 198 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeEE
Confidence 356699999999999999999999999986 4446666665 46799999999999999998643 22
Q ss_pred e-ecCCcchhHHHHH
Q psy160 170 I-YRGDLSEEEEVLQ 183 (346)
Q Consensus 170 ~-y~g~~~~~~~i~~ 183 (346)
. -.|..+ .++|.+
T Consensus 199 pv~~G~~s-~~~L~~ 212 (215)
T PF13728_consen 199 PVSQGFMS-LDELED 212 (215)
T ss_pred EEeeecCC-HHHHHH
Confidence 2 346665 446654
No 236
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=97.74 E-value=0.00014 Score=64.36 Aligned_cols=101 Identities=19% Similarity=0.269 Sum_probs=66.9
Q ss_pred cCceeecC-HHHHHHHHhcC---CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCCh--hhHHhhCCCCcce
Q psy160 86 KNEIEEVN-RRMLDKLLEEN---EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADP--RYARKWGVTKLPA 159 (346)
Q Consensus 86 ~~~v~~l~-~~~~~~~~~~~---~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~--~l~~~~~i~~~Pt 159 (346)
-+.|.+++ .+.|-+.+... ..++|.||.+.++.|..+...|..+|.++.. +.|+++... .+..+|.+...||
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a~~~~~~~~f~~~~LPt 201 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE--VKFVKIRASKCPASENFPDKNLPT 201 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEECGCCTTTTS-TTC-SE
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEEehhccCcccCCcccCCCE
Confidence 35788885 57777776543 3579999999999999999999999998755 778876532 2678999999999
Q ss_pred EEEEecCCcc-ee------cCCcchhHHHHHHHhhc
Q psy160 160 VVYFRHRFPS-IY------RGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 160 l~~~~~g~~~-~y------~g~~~~~~~i~~fi~~~ 188 (346)
|++|++|..+ .+ -|.-....+|..|+.+.
T Consensus 202 llvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 202 LLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp EEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred EEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 9999998732 12 23222233666676654
No 237
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00015 Score=57.24 Aligned_cols=92 Identities=15% Similarity=0.413 Sum_probs=61.3
Q ss_pred HHHHhccceEEEEEEcCCChhhHHHHHHHH---HHHhhcCcCceEEEEE-------------------cChhhhhhCCCc
Q psy160 203 ETMVEETQYLAVYFYKLNCNICDQILEGLE---KVDDECDIYGIHMVKI-------------------QDPQLAKRYSIK 260 (346)
Q Consensus 203 ~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~---~la~~~~~~~i~~~~i-------------------~~~~~~~~~~i~ 260 (346)
..+..+++..+++|-++.|..|..+...+. ++-+-+++ ++.++.+ +..+++++|+++
T Consensus 36 ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vr 114 (182)
T COG2143 36 KSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVR 114 (182)
T ss_pred HhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccc
Confidence 334446788999999999999998876554 33333443 3444433 345899999999
Q ss_pred cccEEEEEe-CCeEEE-eecCccccccchhhhhhhcc
Q psy160 261 TFPALVYFR-NGNPLI-FEGENKILKGTYIGTYISTK 295 (346)
Q Consensus 261 ~~Pti~~~~-~g~~~~-y~g~~~~~~~~~~~~~i~~~ 295 (346)
++|++++|+ .|+.+- --|-...+.-..+..++...
T Consensus 115 stPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g 151 (182)
T COG2143 115 STPTFVFFDKTGKTILELPGYMPPEQFLAVLKYVADG 151 (182)
T ss_pred cCceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence 999999996 456443 35666555444455555543
No 238
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.69 E-value=0.00012 Score=51.75 Aligned_cols=54 Identities=19% Similarity=0.261 Sum_probs=38.2
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-ChhhHHh-----hCCCCcceEEEEecCC
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYARK-----WGVTKLPAVVYFRHRF 167 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~l~~~-----~~i~~~Ptl~~~~~g~ 167 (346)
+++|+++||++|+++.+.+.++... ...+.++ .+..... +++.+.|++ ++.+|.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~-----~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~ 61 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAA-----YEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGS 61 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCc-----eEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCe
Confidence 5789999999999999988776543 3345554 3333333 389999998 466664
No 239
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.65 E-value=0.00012 Score=51.71 Aligned_cols=56 Identities=27% Similarity=0.451 Sum_probs=39.2
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-cChhhhhh-----CCCccccEEEEEeCCeEE
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQLAKR-----YSIKTFPALVYFRNGNPL 274 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~~~~~-----~~i~~~Pti~~~~~g~~~ 274 (346)
++.|+++||++|+.+.+.+.+++..+ ....+ .++..... +++.++|++ ++.+|..+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~~-----~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l 63 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAAY-----EWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFL 63 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCce-----EEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEe
Confidence 46799999999999999998775443 23444 34444333 488999997 57777643
No 240
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.65 E-value=0.00031 Score=59.77 Aligned_cols=41 Identities=5% Similarity=0.187 Sum_probs=35.1
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM 143 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 143 (346)
.+++++|.|+++||+.|.+.+|.+.++++++...++.++.+
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv 78 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAF 78 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEe
Confidence 46899999999999999999999999999996656665554
No 241
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.64 E-value=0.0011 Score=50.49 Aligned_cols=98 Identities=14% Similarity=0.382 Sum_probs=69.2
Q ss_pred EEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHH-hhc-CcCceEEEEE--------cChhhhhhCCC--cc
Q psy160 194 IELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVD-DEC-DIYGIHMVKI--------QDPQLAKRYSI--KT 261 (346)
Q Consensus 194 v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la-~~~-~~~~i~~~~i--------~~~~~~~~~~i--~~ 261 (346)
...++.-+|++++...+.+||.|-... |.-.-...|.++| +.. ...++-++.+ +|.+++++|++ ..
T Consensus 6 ~v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~ 83 (126)
T PF07912_consen 6 CVPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKED 83 (126)
T ss_dssp SEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC
T ss_pred eeeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCccc
Confidence 347888899999999999999997532 2224456777787 333 2236888888 68999999999 57
Q ss_pred ccEEEEEeCC--eEEEe--ecCccccccchhhhhhhccC
Q psy160 262 FPALVYFRNG--NPLIF--EGENKILKGTYIGTYISTKA 296 (346)
Q Consensus 262 ~Pti~~~~~g--~~~~y--~g~~~~~~~~~~~~~i~~~~ 296 (346)
+|.+.+|..| .++.| .|+.+.+. +..|++.++
T Consensus 84 fPv~~LF~~~~~~pv~~p~~~~~t~~~---l~~fvk~~t 119 (126)
T PF07912_consen 84 FPVIYLFVGDKEEPVRYPFDGDVTADN---LQRFVKSNT 119 (126)
T ss_dssp -SEEEEEESSTTSEEEE-TCS-S-HHH---HHHHHHHTS
T ss_pred CCEEEEecCCCCCCccCCccCCccHHH---HHHHHHhCC
Confidence 9999999855 48888 77776433 777887764
No 242
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.64 E-value=0.0005 Score=52.61 Aligned_cols=97 Identities=15% Similarity=0.184 Sum_probs=73.1
Q ss_pred eeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhh---ccCCCcEEEEeC---ChhhHHhhCCCC--cceE
Q psy160 89 IEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGE---TDNMDITFVKMA---DPRYARKWGVTK--LPAV 160 (346)
Q Consensus 89 v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~---~~~~~i~~~~~~---~~~l~~~~~i~~--~Ptl 160 (346)
|+++|.++.+.+..++-+..++|+.+ ..-..+.+.+.++|++ +++. +.|+.+| .....+.+|++. .|.+
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgk-i~Fv~~d~~~~~~~~~~fgl~~~~~P~i 77 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGA-INFLTADGDKFRHPLLHLGKTPADLPVI 77 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCce-EEEEEEechHhhhHHHHcCCCHhHCCEE
Confidence 56889999999988887666666633 3346889999999999 7654 8888877 344889999997 8999
Q ss_pred EEEecCC--cce-ecCCcchhHHHHHHHhhcc
Q psy160 161 VYFRHRF--PSI-YRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 161 ~~~~~g~--~~~-y~g~~~~~~~i~~fi~~~~ 189 (346)
.+..... .+. +.+..+. ++|.+|+++..
T Consensus 78 ~i~~~~~~~Ky~~~~~~~t~-~~i~~Fv~~~~ 108 (111)
T cd03072 78 AIDSFRHMYLFPDFEDVYVP-GKLKQFVLDLH 108 (111)
T ss_pred EEEcchhcCcCCCCccccCH-HHHHHHHHHHh
Confidence 9987643 344 4567764 48999988653
No 243
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.62 E-value=0.00019 Score=56.52 Aligned_cols=85 Identities=14% Similarity=0.219 Sum_probs=47.3
Q ss_pred cCHHHHHHHHhcC-CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-ChhhHHh---hCCCCcceEEEEec-
Q psy160 92 VNRRMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYARK---WGVTKLPAVVYFRH- 165 (346)
Q Consensus 92 l~~~~~~~~~~~~-~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~l~~~---~~i~~~Ptl~~~~~- 165 (346)
++++..+.+..-. +..++.|..+|||.|....|.+.++++...+..+.++..| +.++..+ .|....|+++++.+
T Consensus 28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD 107 (129)
T ss_dssp --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC
Confidence 4445444443333 4568888999999999999999999998644456666554 4444433 57889999999964
Q ss_pred CCcceecCCcc
Q psy160 166 RFPSIYRGDLS 176 (346)
Q Consensus 166 g~~~~y~g~~~ 176 (346)
|+...-=|++.
T Consensus 108 ~~~lg~wgerP 118 (129)
T PF14595_consen 108 GKELGRWGERP 118 (129)
T ss_dssp --EEEEEESS-
T ss_pred CCEeEEEcCCC
Confidence 55444445554
No 244
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.60 E-value=0.0005 Score=59.80 Aligned_cols=40 Identities=3% Similarity=0.033 Sum_probs=34.1
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEE
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVK 142 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~ 142 (346)
.+++++|.|+++||+.|....|.+.+++++++..++.++-
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIg 137 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILA 137 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEE
Confidence 4588999999999999999999999999998655555543
No 245
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.60 E-value=0.00042 Score=55.75 Aligned_cols=40 Identities=25% Similarity=0.590 Sum_probs=31.3
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
+..+++.|++.||++|+...+.+.++.+++...++.++.|
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V 63 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAV 63 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEE
Confidence 3344444559999999999999999999986546777777
No 246
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.59 E-value=0.00063 Score=59.29 Aligned_cols=78 Identities=15% Similarity=0.252 Sum_probs=55.6
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEE----------------------------------------Ee-
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFV----------------------------------------KM- 143 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~----------------------------------------~~- 143 (346)
+..++.|..|.|++|+++.+++.++.+. +..+.+. .+
T Consensus 108 k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~ 185 (232)
T PRK10877 108 KHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCD 185 (232)
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccccc
Confidence 5679999999999999999998876531 1111110 00
Q ss_pred ----CChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHHHHhhc
Q psy160 144 ----ADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 144 ----~~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~~~ 188 (346)
++..+++++||++.||++ +.+|+. ..|....+ .|.+++.+.
T Consensus 186 ~~v~~~~~la~~lgi~gTPtiv-~~~G~~--~~G~~~~~-~L~~~l~~~ 230 (232)
T PRK10877 186 VDIADHYALGVQFGVQGTPAIV-LSNGTL--VPGYQGPK-EMKAFLDEH 230 (232)
T ss_pred chHHHhHHHHHHcCCccccEEE-EcCCeE--eeCCCCHH-HHHHHHHHc
Confidence 166789999999999999 667763 46777644 788888754
No 247
>KOG0911|consensus
Probab=97.57 E-value=0.00089 Score=56.46 Aligned_cols=162 Identities=13% Similarity=0.167 Sum_probs=93.9
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC---ChHHHHhcCCCCCCeEEEEeCCceee-ecCCCCCH-HHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKIS---DTEAAAKYNIINLPSLVYFRKQVPLL-YDGDLFDE-EKILT 75 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~~~~~-y~G~~~~~-~~i~~ 75 (346)
+.|+++||..|+++...++.+++.. .+..+++.+ .+++|+.+.+...|.++++..|..+. ..|..... ....+
T Consensus 22 ~~f~a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~~~~~~~ 99 (227)
T KOG0911|consen 22 LHFWAIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPPFLVSKVE 99 (227)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHhh--hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcHHHHHHHH
Confidence 3699999999999999999999987 567777775 57999999999999999998775543 23322221 11222
Q ss_pred HHhccCC----ccccCceeecC-------HHHHHHHHhcCCcEEEEEE-----CCCChhHHHHHHHHHHHHhhccCCCcE
Q psy160 76 WLTSQDV----FEIKNEIEEVN-------RRMLDKLLEENEFVTVFFY-----ETDHKDSVKVLERLEKIDGETDNMDIT 139 (346)
Q Consensus 76 ~i~~~~~----p~~~~~v~~l~-------~~~~~~~~~~~~~~lv~F~-----~~~C~~c~~~~~~~~~~a~~~~~~~i~ 139 (346)
.+..... +.....+.+.. .+-++++++++. ++.|- .|.|+..+++...++... +.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~lv~a~~--v~lFmKG~p~~P~CGFS~~~v~iL~~~n-------V~ 170 (227)
T KOG0911|consen 100 KLAESGSASLGMGLSTTIRETQTTNETDLDNRLEKLVKAKP--VMLFMKGTPEEPKCGFSRQLVGILQSHN-------VN 170 (227)
T ss_pred HhhhhcccccCCCCCcchhcccccchhhHHHHHHHhcccCe--EEEEecCCCCcccccccHHHHHHHHHcC-------CC
Confidence 2222211 11122222211 113334433333 45554 467998888777765543 33
Q ss_pred EEEeC---ChhhHHhhC-CCCcceE-EEEecCCcceecCCcc
Q psy160 140 FVKMA---DPRYARKWG-VTKLPAV-VYFRHRFPSIYRGDLS 176 (346)
Q Consensus 140 ~~~~~---~~~l~~~~~-i~~~Ptl-~~~~~g~~~~y~g~~~ 176 (346)
+...| +..+.+-.+ ....||+ .+|-+| .+.|..+
T Consensus 171 ~~~fdIL~DeelRqglK~fSdWPTfPQlyI~G---EFiGGlD 209 (227)
T KOG0911|consen 171 YTIFDVLTDEELRQGLKEFSDWPTFPQLYVKG---EFIGGLD 209 (227)
T ss_pred eeEEeccCCHHHHHHhhhhcCCCCccceeECC---EeccCcH
Confidence 44433 555554333 2334555 344566 3555543
No 248
>PLN02412 probable glutathione peroxidase
Probab=97.56 E-value=0.00036 Score=57.64 Aligned_cols=41 Identities=2% Similarity=0.029 Sum_probs=35.1
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM 143 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 143 (346)
.+++++|.|+++||+.|.+..|.+.++.+++++.++.++-+
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv 68 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAF 68 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEe
Confidence 45789999999999999999999999999997666666654
No 249
>KOG1672|consensus
Probab=97.56 E-value=0.00038 Score=57.18 Aligned_cols=84 Identities=23% Similarity=0.325 Sum_probs=70.7
Q ss_pred cCceeecC-HHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEE
Q psy160 86 KNEIEEVN-RRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVV 161 (346)
Q Consensus 86 ~~~v~~l~-~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~ 161 (346)
.+...++. +.+|-+..+++..+++.||-|.-..|+-+-..++.+|+..-. ..|++++ .|=|+.+++|+-.|++.
T Consensus 65 hG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e--TrFikvnae~~PFlv~kL~IkVLP~v~ 142 (211)
T KOG1672|consen 65 HGEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE--TRFIKVNAEKAPFLVTKLNIKVLPTVA 142 (211)
T ss_pred CceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc--ceEEEEecccCceeeeeeeeeEeeeEE
Confidence 34677775 788888888889999999999999999999999999987533 6677776 66799999999999999
Q ss_pred EEecCCccee
Q psy160 162 YFRHRFPSIY 171 (346)
Q Consensus 162 ~~~~g~~~~y 171 (346)
+|.+|....|
T Consensus 143 l~k~g~~~D~ 152 (211)
T KOG1672|consen 143 LFKNGKTVDY 152 (211)
T ss_pred EEEcCEEEEE
Confidence 9999985543
No 250
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.52 E-value=0.00032 Score=59.74 Aligned_cols=35 Identities=6% Similarity=0.313 Sum_probs=30.7
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEc
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKI 35 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 35 (346)
|.|+|+||+.|.+-+|.|.++.+.+...|+.++.+
T Consensus 44 v~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv 78 (199)
T PTZ00056 44 ITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAF 78 (199)
T ss_pred EEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEe
Confidence 57999999999999999999999997777777655
No 251
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=97.50 E-value=0.00058 Score=54.39 Aligned_cols=72 Identities=15% Similarity=0.238 Sum_probs=49.8
Q ss_pred CCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEEe--C----------------------ChhhHHhhCCCCc-
Q psy160 104 NEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVKM--A----------------------DPRYARKWGVTKL- 157 (346)
Q Consensus 104 ~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~----------------------~~~l~~~~~i~~~- 157 (346)
+++++|.|+ +.||+.|....+.+.++.+.+...++.++.+ + ...+++.||+...
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 102 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEK 102 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence 678888998 5899999999999999998885444555543 1 3456677777766
Q ss_pred --------ceEEEEec-CC-cceecCCc
Q psy160 158 --------PAVVYFRH-RF-PSIYRGDL 175 (346)
Q Consensus 158 --------Ptl~~~~~-g~-~~~y~g~~ 175 (346)
|+.+++.. |+ ...|.|..
T Consensus 103 ~~~~~~~~p~~~lid~~G~v~~~~~g~~ 130 (140)
T cd03017 103 KKKYMGIERSTFLIDPDGKIVKVWRKVK 130 (140)
T ss_pred ccccCCcceeEEEECCCCEEEEEEecCC
Confidence 67666653 54 33355544
No 252
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.48 E-value=0.00053 Score=55.15 Aligned_cols=39 Identities=23% Similarity=0.207 Sum_probs=30.1
Q ss_pred CcEEEEE-ECCCChhHHHHHHHHHHHHhhccCCCcEEEEe
Q psy160 105 EFVTVFF-YETDHKDSVKVLERLEKIDGETDNMDITFVKM 143 (346)
Q Consensus 105 ~~~lv~F-~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 143 (346)
++++|.| .+.||+.|+..+|.+.++.+++...++.++.+
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V 63 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAV 63 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEE
Confidence 4455555 58999999999999999999986555666554
No 253
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.48 E-value=0.00043 Score=49.81 Aligned_cols=56 Identities=27% Similarity=0.428 Sum_probs=40.8
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEc---Ch-----hhhhhCCCccccEEEEEeCCeE
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ---DP-----QLAKRYSIKTFPALVYFRNGNP 273 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~---~~-----~~~~~~~i~~~Pti~~~~~g~~ 273 (346)
++.|+++||++|..+.+.+.+++ ..+ .+.+..++ +. .+.+..++.++|++ |-+|+.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~-~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~ 64 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP-AYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGKF 64 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC-CCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCEE
Confidence 36799999999999999999987 222 35666661 22 25666789999997 456754
No 254
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.46 E-value=0.0003 Score=50.64 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=39.6
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---Ch-----hhHHhhCCCCcceEEEEecCC
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DP-----RYARKWGVTKLPAVVYFRHRF 167 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~-----~l~~~~~i~~~Ptl~~~~~g~ 167 (346)
++.|+++||++|.++.+.+.++.-. . .+.+..++ +. .+.+..|+..+|++.+ +|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~--~-~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~ 63 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK--P-AYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGK 63 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC--C-CCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCE
Confidence 4789999999999999999887621 1 25555554 11 2666789999999843 553
No 255
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=97.46 E-value=0.0019 Score=48.74 Aligned_cols=89 Identities=21% Similarity=0.397 Sum_probs=68.2
Q ss_pred CHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEec-------
Q psy160 93 NRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRH------- 165 (346)
Q Consensus 93 ~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~------- 165 (346)
+.+++++++..++..+|-|+..--+ .....|.++|..++.. ..|+......+...+++ .|++++|+.
T Consensus 7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d-~~F~~~~~~~~~~~~~~--~~~ivl~~p~~~~~k~ 80 (104)
T cd03069 7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRES-FRFAHTSDKQLLEKYGY--GEGVVLFRPPRLSNKF 80 (104)
T ss_pred CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhc-CEEEEEChHHHHHhcCC--CCceEEEechhhhccc
Confidence 5678889888888888888765333 4677888999988443 78888888889999998 788888832
Q ss_pred -CCcceecCCcchhHHHHHHHhhc
Q psy160 166 -RFPSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 166 -g~~~~y~g~~~~~~~i~~fi~~~ 188 (346)
.....|+|..+ .++|.+|+..+
T Consensus 81 de~~~~y~g~~~-~~~l~~fi~~~ 103 (104)
T cd03069 81 EDSSVKFDGDLD-SSKIKKFIREN 103 (104)
T ss_pred CcccccccCcCC-HHHHHHHHHhh
Confidence 22456999887 45999999764
No 256
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.45 E-value=0.00065 Score=56.63 Aligned_cols=80 Identities=9% Similarity=0.150 Sum_probs=54.0
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhh-ccC--CCc-EEEE-----------------------------eC-Chhh
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGE-TDN--MDI-TFVK-----------------------------MA-DPRY 148 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~-~~~--~~i-~~~~-----------------------------~~-~~~l 148 (346)
.+++++|.|+|.||+.|+.-.|.+.+++.+ +.- ... ..++ .| ...+
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v 137 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAV 137 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchH
Confidence 378999999999999999999999998753 211 000 1111 12 3356
Q ss_pred HHhhCCCCcceE-EEEe-cCC-cceecCCcchhHHHHH
Q psy160 149 ARKWGVTKLPAV-VYFR-HRF-PSIYRGDLSEEEEVLQ 183 (346)
Q Consensus 149 ~~~~~i~~~Ptl-~~~~-~g~-~~~y~g~~~~~~~i~~ 183 (346)
...||+.+.|+. +++. +|+ ...+.|..+.+ ++.+
T Consensus 138 ~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~e-e~e~ 174 (184)
T TIGR01626 138 KNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDS-DIQT 174 (184)
T ss_pred HHhcCCCCCCceEEEECCCCcEEEEEeCCCCHH-HHHH
Confidence 779999999776 4554 466 45678887744 4443
No 257
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.44 E-value=0.0019 Score=50.85 Aligned_cols=99 Identities=20% Similarity=0.267 Sum_probs=67.5
Q ss_pred EEEcc-HHHHHHHHhccceEEEEEEcC--CChh-h-HHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCc--ccc
Q psy160 194 IELIT-RVMLETMVEETQYLAVYFYKL--NCNI-C-DQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIK--TFP 263 (346)
Q Consensus 194 v~~l~-~~~~~~~~~~~~~~lv~F~~~--~c~~-c-~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~--~~P 263 (346)
+..++ .+.+++...+++.++|.|... .|.. + ......+.++|+++++..+.|+.+ ....+.+.||+. ++|
T Consensus 4 ~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P 83 (130)
T cd02983 4 IIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGYP 83 (130)
T ss_pred eEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCCC
Confidence 34444 556676777777777777643 2322 2 467899999999999833888888 455699999995 499
Q ss_pred EEEEEeCCe--EEEeecCccccccchhhhhhhcc
Q psy160 264 ALVYFRNGN--PLIFEGENKILKGTYIGTYISTK 295 (346)
Q Consensus 264 ti~~~~~g~--~~~y~g~~~~~~~~~~~~~i~~~ 295 (346)
+++++...+ +..+.|..+.+. +..|++.-
T Consensus 84 ~v~i~~~~~~KY~~~~~~~t~e~---i~~Fv~~~ 114 (130)
T cd02983 84 AMVAINFRKMKFATLKGSFSEDG---INEFLREL 114 (130)
T ss_pred EEEEEecccCccccccCccCHHH---HHHHHHHH
Confidence 999997543 322567776433 66666653
No 258
>KOG3425|consensus
Probab=97.43 E-value=0.001 Score=50.27 Aligned_cols=70 Identities=16% Similarity=0.270 Sum_probs=51.5
Q ss_pred HHHHHHHh---ccceEEEEEEc--------CCChhhHHHHHHHHHHHhhcCcCceEEEEE----------cChhhhhhCC
Q psy160 200 VMLETMVE---ETQYLAVYFYK--------LNCNICDQILEGLEKVDDECDIYGIHMVKI----------QDPQLAKRYS 258 (346)
Q Consensus 200 ~~~~~~~~---~~~~~lv~F~~--------~~c~~c~~~~~~~~~la~~~~~~~i~~~~i----------~~~~~~~~~~ 258 (346)
++|++.++ +.+-++|+|++ +||+.|....|.+.++-+.... ++.|+.+ .+..+-+..+
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~-~~~~v~v~VG~rp~Wk~p~n~FR~d~~ 91 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE-DVHFVHVYVGNRPYWKDPANPFRKDPG 91 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC-ceEEEEEEecCCCcccCCCCccccCCC
Confidence 55666543 34558999995 5999999999999998876554 6777766 2344555666
Q ss_pred C-ccccEEEEEeC
Q psy160 259 I-KTFPALVYFRN 270 (346)
Q Consensus 259 i-~~~Pti~~~~~ 270 (346)
+ +++||++=+++
T Consensus 92 ~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 92 ILTAVPTLLRWKR 104 (128)
T ss_pred ceeecceeeEEcC
Confidence 6 89999998874
No 259
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.43 E-value=0.00037 Score=58.10 Aligned_cols=75 Identities=7% Similarity=0.100 Sum_probs=50.1
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhh-cCc--Cc-eEEEEE------------------------------cChhhh
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDE-CDI--YG-IHMVKI------------------------------QDPQLA 254 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~-~~~--~~-i~~~~i------------------------------~~~~~~ 254 (346)
.++++|.|||.||++|+.-.|.+.+++.+ +.- +. ...+.+ .+..+.
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~ 138 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVK 138 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHH
Confidence 78999999999999999999999999754 221 00 011111 223456
Q ss_pred hhCCCccccEE-EEE-eCCeE-EEeecCcccc
Q psy160 255 KRYSIKTFPAL-VYF-RNGNP-LIFEGENKIL 283 (346)
Q Consensus 255 ~~~~i~~~Pti-~~~-~~g~~-~~y~g~~~~~ 283 (346)
..+++.+.|+. +++ ++|+. ..+.|..+.+
T Consensus 139 ~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~e 170 (184)
T TIGR01626 139 NAWQLNSEDSAIIVLDKTGKVKFVKEGALSDS 170 (184)
T ss_pred HhcCCCCCCceEEEECCCCcEEEEEeCCCCHH
Confidence 68889999766 455 56764 4567876543
No 260
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.39 E-value=0.0012 Score=57.97 Aligned_cols=81 Identities=20% Similarity=0.296 Sum_probs=59.6
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC------------ChhhHHhhCCCCcceEEEEecCC--cce
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA------------DPRYARKWGVTKLPAVVYFRHRF--PSI 170 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~------------~~~l~~~~~i~~~Ptl~~~~~g~--~~~ 170 (346)
+.-|++||.+.|++|.++.|.+...++.+. ..+..+.+| +..+++++||..+|++++...+. ...
T Consensus 151 ~~gL~fFy~~~C~~C~~~apil~~fa~~yg-i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~p 229 (256)
T TIGR02739 151 SYGLFFFYRGKSPISQKMAPVIQAFAKEYG-ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMSP 229 (256)
T ss_pred ceeEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEEE
Confidence 456999999999999999999999998863 335555555 34588999999999999997643 222
Q ss_pred -ecCCcchhHHHHHHHhh
Q psy160 171 -YRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 171 -y~g~~~~~~~i~~fi~~ 187 (346)
=.|..+ .++|.+-+..
T Consensus 230 v~~G~iS-~deL~~Ri~~ 246 (256)
T TIGR02739 230 LAYGFIS-QDELKERILN 246 (256)
T ss_pred EeeccCC-HHHHHHHHHH
Confidence 236666 4467665544
No 261
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.39 E-value=0.00071 Score=58.20 Aligned_cols=62 Identities=29% Similarity=0.562 Sum_probs=51.6
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE------------cChhhhhhCCCccccEEEEEeCC
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI------------QDPQLAKRYSIKTFPALVYFRNG 271 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------~~~~~~~~~~i~~~Pti~~~~~g 271 (346)
++.-|+.||.+.|+.|..+.|.+..+++++. ..+..+.+ .+.+++++++|..+|+++++..+
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg-~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~ 193 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYG-FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPN 193 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhC-CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECC
Confidence 5677999999999999999999999999974 35555555 24788999999999999998654
No 262
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.38 E-value=0.00073 Score=52.01 Aligned_cols=71 Identities=14% Similarity=0.232 Sum_probs=46.1
Q ss_pred HHHHHHHh----cCCcEEEEEEC-------CCChhHHHHHHHHHHHHhhccCCCcEEEEeC----------ChhhHH--h
Q psy160 95 RMLDKLLE----ENEFVTVFFYE-------TDHKDSVKVLERLEKIDGETDNMDITFVKMA----------DPRYAR--K 151 (346)
Q Consensus 95 ~~~~~~~~----~~~~~lv~F~~-------~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----------~~~l~~--~ 151 (346)
++|.++++ ++++++|+|++ +||+.|....|.++++-..... +..++.+. +..... +
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG~r~~Wkdp~n~fR~~p~ 84 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVGDRPEWKDPNNPFRTDPD 84 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE---HHHHC-TTSHHHH--C
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcCCHHHhCCCCCCceEcce
Confidence 34444443 34788899985 5999999999999988776532 35555432 223344 6
Q ss_pred hCCCCcceEEEEecC
Q psy160 152 WGVTKLPAVVYFRHR 166 (346)
Q Consensus 152 ~~i~~~Ptl~~~~~g 166 (346)
++++++|||+-+..+
T Consensus 85 ~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 85 LKLKGIPTLIRWETG 99 (119)
T ss_dssp C---SSSEEEECTSS
T ss_pred eeeeecceEEEECCC
Confidence 999999999999765
No 263
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=97.37 E-value=0.00091 Score=53.25 Aligned_cols=40 Identities=18% Similarity=0.359 Sum_probs=32.2
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.|| +.||+.|....+.+.++..++.+.++.++.+
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~i 63 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGV 63 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 578889999 5899999999999999988886445666655
No 264
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.37 E-value=0.0039 Score=46.91 Aligned_cols=95 Identities=20% Similarity=0.365 Sum_probs=70.8
Q ss_pred eeec-CHHHHHHHHh-cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEec-
Q psy160 89 IEEV-NRRMLDKLLE-ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRH- 165 (346)
Q Consensus 89 v~~l-~~~~~~~~~~-~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~- 165 (346)
+..+ +.++++.++. +++..+|-|+..--+ .....|.++|..++. ...|+......+...+++. .|++.++++
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~~~~~~~~~~~~~-~~~i~l~~~~ 76 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHP-YIKFFATFDSKVAKKLGLK-MNEVDFYEPF 76 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhc-CCEEEEECcHHHHHHcCCC-CCcEEEeCCC
Confidence 3445 5678999998 777777877765333 456688999998854 3788888888888888875 799999976
Q ss_pred CC-ccee-cCCcchhHHHHHHHhhcc
Q psy160 166 RF-PSIY-RGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 166 g~-~~~y-~g~~~~~~~i~~fi~~~~ 189 (346)
.. ...| .|..+. +.|.+|+..+.
T Consensus 77 ~e~~~~y~~g~~~~-~~l~~fi~~~~ 101 (102)
T cd03066 77 MEEPVTIPDKPYSE-EELVDFVEEHK 101 (102)
T ss_pred CCCCcccCCCCCCH-HHHHHHHHHhc
Confidence 33 5669 777664 49999998653
No 265
>KOG3414|consensus
Probab=97.37 E-value=0.0014 Score=49.86 Aligned_cols=78 Identities=18% Similarity=0.337 Sum_probs=61.1
Q ss_pred cHHHHHHHHh--ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCc-eEEEEE-cChhhhhhCCCccccEEEEEeCCeE
Q psy160 198 TRVMLETMVE--ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYG-IHMVKI-QDPQLAKRYSIKTFPALVYFRNGNP 273 (346)
Q Consensus 198 ~~~~~~~~~~--~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~-i~~~~i-~~~~~~~~~~i~~~Pti~~~~~g~~ 273 (346)
+....++.+. +.+.++|-|...|-+.|.+|...+..+++.+.+.. +.++.+ +-+++.+.|++...|++++|-+++.
T Consensus 10 s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kH 89 (142)
T KOG3414|consen 10 SGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKH 89 (142)
T ss_pred cHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCce
Confidence 4456676543 46788888999999999999999999999988532 444444 5678899999999999999977765
Q ss_pred EE
Q psy160 274 LI 275 (346)
Q Consensus 274 ~~ 275 (346)
+.
T Consensus 90 mk 91 (142)
T KOG3414|consen 90 MK 91 (142)
T ss_pred EE
Confidence 44
No 266
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.36 E-value=0.00053 Score=55.65 Aligned_cols=91 Identities=18% Similarity=0.326 Sum_probs=55.7
Q ss_pred HHHHhhccccCcE--EEccHHHHHHHHhccceEEEEEEcCCChhhHHHHH-HHH--HHHhhcCcCceEEEEE---cChhh
Q psy160 182 LQWLITQKTEDRI--ELITRVMLETMVEETQYLAVYFYKLNCNICDQILE-GLE--KVDDECDIYGIHMVKI---QDPQL 253 (346)
Q Consensus 182 ~~fi~~~~~~~~v--~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~-~~~--~la~~~~~~~i~~~~i---~~~~~ 253 (346)
-.|+.++... .| ...+.+.++...+++++++|.++.+||..|..|.. .|+ ++|+.++. ++.-+++ +.+++
T Consensus 9 Spyl~~ha~~-~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~-~FI~VkvDree~Pdi 86 (163)
T PF03190_consen 9 SPYLRQHAHN-PVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR-NFIPVKVDREERPDI 86 (163)
T ss_dssp -HHHHTTTTS-SS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH-H-EEEEEETTT-HHH
T ss_pred CHHHHHhccC-CCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC-CEEEEEeccccCccH
Confidence 3455555443 23 33456778888889999999999999999998865 443 56666654 5556666 56788
Q ss_pred hhhC--------CCccccEEEEEe-CCeEE
Q psy160 254 AKRY--------SIKTFPALVYFR-NGNPL 274 (346)
Q Consensus 254 ~~~~--------~i~~~Pti~~~~-~g~~~ 274 (346)
...| |..|+|+.++.. +|+++
T Consensus 87 d~~y~~~~~~~~~~gGwPl~vfltPdg~p~ 116 (163)
T PF03190_consen 87 DKIYMNAVQAMSGSGGWPLTVFLTPDGKPF 116 (163)
T ss_dssp HHHHHHHHHHHHS---SSEEEEE-TTS-EE
T ss_pred HHHHHHHHHHhcCCCCCCceEEECCCCCee
Confidence 7777 778999988874 66654
No 267
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=97.35 E-value=0.0013 Score=49.77 Aligned_cols=88 Identities=20% Similarity=0.328 Sum_probs=66.2
Q ss_pred cHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEcChhhhhhCCCccccEEEEEeC-------
Q psy160 198 TRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRN------- 270 (346)
Q Consensus 198 ~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~i~~~Pti~~~~~------- 270 (346)
+.+++++++..++.++|.|+..--. .....|.++|..++. +..|+...+..+.+.+++ .|++++|++
T Consensus 7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~~~~~~~~~~~~--~~~ivl~~p~~~~~k~ 80 (104)
T cd03069 7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRE-SFRFAHTSDKQLLEKYGY--GEGVVLFRPPRLSNKF 80 (104)
T ss_pred CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhh-cCEEEEEChHHHHHhcCC--CCceEEEechhhhccc
Confidence 5677888888888888888875433 567899999999975 788988888888899998 688998843
Q ss_pred -CeEEEeecCccccccchhhhhhhc
Q psy160 271 -GNPLIFEGENKILKGTYIGTYIST 294 (346)
Q Consensus 271 -g~~~~y~g~~~~~~~~~~~~~i~~ 294 (346)
.....|.|..+.+ .|..|++.
T Consensus 81 de~~~~y~g~~~~~---~l~~fi~~ 102 (104)
T cd03069 81 EDSSVKFDGDLDSS---KIKKFIRE 102 (104)
T ss_pred CcccccccCcCCHH---HHHHHHHh
Confidence 2345688876522 27777664
No 268
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.28 E-value=0.0021 Score=48.08 Aligned_cols=78 Identities=21% Similarity=0.364 Sum_probs=55.5
Q ss_pred ccHHHHHHHHhc--cceEEEEEEcCCChhhHHHHHHHHHHHhhcCc-CceEEEEE-----cChhhhhhCCCc-cccEEEE
Q psy160 197 ITRVMLETMVEE--TQYLAVYFYKLNCNICDQILEGLEKVDDECDI-YGIHMVKI-----QDPQLAKRYSIK-TFPALVY 267 (346)
Q Consensus 197 l~~~~~~~~~~~--~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~-~~i~~~~i-----~~~~~~~~~~i~-~~Pti~~ 267 (346)
-+.++++++++. +++++|+=++..|+-.......|++......+ ..+.+..+ -...++++|||. .-|.+++
T Consensus 5 ~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~il 84 (105)
T PF11009_consen 5 TTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVIL 84 (105)
T ss_dssp -SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEE
T ss_pred CCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEE
Confidence 356889998876 78999988999999999999999988887664 23444444 345689999996 5799999
Q ss_pred EeCCeEE
Q psy160 268 FRNGNPL 274 (346)
Q Consensus 268 ~~~g~~~ 274 (346)
+++|+.+
T Consensus 85 i~~g~~v 91 (105)
T PF11009_consen 85 IKNGKVV 91 (105)
T ss_dssp EETTEEE
T ss_pred EECCEEE
Confidence 9999864
No 269
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.28 E-value=0.0012 Score=47.81 Aligned_cols=74 Identities=19% Similarity=0.320 Sum_probs=50.4
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCC-----hhhHHhhC--CCCcceEEEEecCCcceecCCcchhH
Q psy160 107 VTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD-----PRYARKWG--VTKLPAVVYFRHRFPSIYRGDLSEEE 179 (346)
Q Consensus 107 ~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~-----~~l~~~~~--i~~~Ptl~~~~~g~~~~y~g~~~~~~ 179 (346)
.++.|+.+||++|++....++++...+.+..+..++++. ..+....+ +..+|+|++ +|+. -|..+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~---igg~~--- 73 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKH---IGGCT--- 73 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEE---EcCHH---
Confidence 478999999999999999999998765454455555542 23555455 478999864 5642 34332
Q ss_pred HHHHHHhhc
Q psy160 180 EVLQWLITQ 188 (346)
Q Consensus 180 ~i~~fi~~~ 188 (346)
++.+++..+
T Consensus 74 ~~~~~~~~~ 82 (85)
T PRK11200 74 DFEAYVKEN 82 (85)
T ss_pred HHHHHHHHh
Confidence 677776654
No 270
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.26 E-value=0.0028 Score=47.71 Aligned_cols=90 Identities=12% Similarity=0.238 Sum_probs=68.0
Q ss_pred cHHHHHHHHh-ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEcChhhhhhCCCccccEEEEEeC-C-eEE
Q psy160 198 TRVMLETMVE-ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRN-G-NPL 274 (346)
Q Consensus 198 ~~~~~~~~~~-~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~i~~~Pti~~~~~-g-~~~ 274 (346)
+.++++++++ ++...+|.|+..--+ .....|.++|..++. ++.|+...+.++.+.+++. .|+++++++ . ...
T Consensus 7 ~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~~~~~~~~~~~~~-~~~i~l~~~~~e~~~ 81 (102)
T cd03066 7 SERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHP-YIKFFATFDSKVAKKLGLK-MNEVDFYEPFMEEPV 81 (102)
T ss_pred CHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhc-CCEEEEECcHHHHHHcCCC-CCcEEEeCCCCCCCc
Confidence 6678899998 788888888876433 567889999999975 7888888888888888875 699999975 3 356
Q ss_pred Ee-ecCccccccchhhhhhhcc
Q psy160 275 IF-EGENKILKGTYIGTYISTK 295 (346)
Q Consensus 275 ~y-~g~~~~~~~~~~~~~i~~~ 295 (346)
.| .|..+.+ .|..|++.+
T Consensus 82 ~y~~g~~~~~---~l~~fi~~~ 100 (102)
T cd03066 82 TIPDKPYSEE---ELVDFVEEH 100 (102)
T ss_pred ccCCCCCCHH---HHHHHHHHh
Confidence 68 6655432 277787754
No 271
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.23 E-value=0.00061 Score=55.32 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=34.4
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.||++||+ |....|.+.++.+++++.++.++.+
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v 60 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGF 60 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEe
Confidence 57899999999999 9999999999999997656777766
No 272
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.23 E-value=0.0023 Score=55.83 Aligned_cols=81 Identities=14% Similarity=0.290 Sum_probs=58.4
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC------------ChhhHHhhCCCCcceEEEEecCC--cce
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA------------DPRYARKWGVTKLPAVVYFRHRF--PSI 170 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~------------~~~l~~~~~i~~~Ptl~~~~~g~--~~~ 170 (346)
+.-|++||.+.|++|.++.|.+...++.+. ..+..+.+| +...+.++||..+|++++...+. ...
T Consensus 144 ~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg-~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~p 222 (248)
T PRK13703 144 HYGLMFFYRGQDPIDGQLAQVINDFRDTYG-LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRP 222 (248)
T ss_pred cceEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEE
Confidence 456999999999999999999999999863 234445554 23467899999999999997643 222
Q ss_pred -ecCCcchhHHHHHHHhh
Q psy160 171 -YRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 171 -y~g~~~~~~~i~~fi~~ 187 (346)
=.|..+ .++|.+-+..
T Consensus 223 v~~G~iS-~deL~~Ri~~ 239 (248)
T PRK13703 223 LSYGFIT-QDDLAKRFLN 239 (248)
T ss_pred EeeccCC-HHHHHHHHHH
Confidence 236666 4467665543
No 273
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.20 E-value=0.00058 Score=55.47 Aligned_cols=41 Identities=7% Similarity=0.100 Sum_probs=34.7
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA 144 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~ 144 (346)
.+++++|.|+++||+ |...+|.++++++++++.++.++.++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~ 61 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFP 61 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEec
Confidence 368899999999999 99999999999999866666666653
No 274
>KOG3425|consensus
Probab=97.20 E-value=0.0023 Score=48.30 Aligned_cols=70 Identities=16% Similarity=0.311 Sum_probs=49.7
Q ss_pred HHHHHHHh---cCCcEEEEEEC--------CCChhHHHHHHHHHHHHhhccCCCcEEEEeC----------ChhhHHhhC
Q psy160 95 RMLDKLLE---ENEFVTVFFYE--------TDHKDSVKVLERLEKIDGETDNMDITFVKMA----------DPRYARKWG 153 (346)
Q Consensus 95 ~~~~~~~~---~~~~~lv~F~~--------~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----------~~~l~~~~~ 153 (346)
+.|++.++ +++.++|+|++ +||+.|.+..|.+.++-+... .++.|+.++ +.......+
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap-~~~~~v~v~VG~rp~Wk~p~n~FR~d~~ 91 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP-EDVHFVHVYVGNRPYWKDPANPFRKDPG 91 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC-CceEEEEEEecCCCcccCCCCccccCCC
Confidence 44555543 44669999995 699999999999999888552 236666543 333555666
Q ss_pred C-CCcceEEEEec
Q psy160 154 V-TKLPAVVYFRH 165 (346)
Q Consensus 154 i-~~~Ptl~~~~~ 165 (346)
+ .+.|||+=+.+
T Consensus 92 ~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 92 ILTAVPTLLRWKR 104 (128)
T ss_pred ceeecceeeEEcC
Confidence 6 89999998864
No 275
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.19 E-value=0.0044 Score=47.37 Aligned_cols=95 Identities=11% Similarity=0.139 Sum_probs=66.1
Q ss_pred eecCHHHHHHHHhcCCcEEEEEE----CCCChhHHHHHHHHHHHHhhcc-CCCcEEEEeC---ChhhHHhhCCCC----c
Q psy160 90 EEVNRRMLDKLLEENEFVTVFFY----ETDHKDSVKVLERLEKIDGETD-NMDITFVKMA---DPRYARKWGVTK----L 157 (346)
Q Consensus 90 ~~l~~~~~~~~~~~~~~~lv~F~----~~~C~~c~~~~~~~~~~a~~~~-~~~i~~~~~~---~~~l~~~~~i~~----~ 157 (346)
-++|.+|..... . .+.++.|+ +..-..-..+.+.+.++|+.++ +. +.|+-+| .....+.||++. .
T Consensus 2 ~~~~~en~~~~~-~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gk-i~Fv~~D~~~~~~~l~~fgl~~~~~~~ 78 (111)
T cd03073 2 GHRTKDNRAQFT-K-KPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRK-LNFAVADKEDFSHELEEFGLDFSGGEK 78 (111)
T ss_pred CeeccchHHHhc-c-CCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCe-EEEEEEcHHHHHHHHHHcCCCcccCCC
Confidence 356778887774 2 33444444 2343455689999999999998 44 8888887 345788999984 9
Q ss_pred ceEEEEecCC-cceecCCc-chhHHHHHHHhhc
Q psy160 158 PAVVYFRHRF-PSIYRGDL-SEEEEVLQWLITQ 188 (346)
Q Consensus 158 Ptl~~~~~g~-~~~y~g~~-~~~~~i~~fi~~~ 188 (346)
|++.++..+. .+..++.. + .++|.+|+++.
T Consensus 79 P~~~i~~~~~~KY~~~~~~~t-~e~i~~F~~~f 110 (111)
T cd03073 79 PVVAIRTAKGKKYVMEEEFSD-VDALEEFLEDF 110 (111)
T ss_pred CEEEEEeCCCCccCCCcccCC-HHHHHHHHHHh
Confidence 9999987433 33346666 5 45899998753
No 276
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.14 E-value=0.0066 Score=47.84 Aligned_cols=102 Identities=19% Similarity=0.249 Sum_probs=70.9
Q ss_pred ceeecCHHHH-HHHHhcCCcEEEEEECC--CChh-H-HHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCC--Cc
Q psy160 88 EIEEVNRRML-DKLLEENEFVTVFFYET--DHKD-S-VKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVT--KL 157 (346)
Q Consensus 88 ~v~~l~~~~~-~~~~~~~~~~lv~F~~~--~C~~-c-~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~--~~ 157 (346)
.+.+|+.+++ ++.=.++..-+|.|... .|.. + ..+...+.++|+.+++..+.|+-+| +..+.+.||+. ++
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~ 82 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGY 82 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCC
Confidence 5677775544 54444444446666432 1322 2 4788899999999977557777665 55699999996 48
Q ss_pred ceEEEEecCC-cce-ecCCcchhHHHHHHHhhccc
Q psy160 158 PAVVYFRHRF-PSI-YRGDLSEEEEVLQWLITQKT 190 (346)
Q Consensus 158 Ptl~~~~~g~-~~~-y~g~~~~~~~i~~fi~~~~~ 190 (346)
|++++++..+ .+. +.|..+.+ +|.+|+.+...
T Consensus 83 P~v~i~~~~~~KY~~~~~~~t~e-~i~~Fv~~~l~ 116 (130)
T cd02983 83 PAMVAINFRKMKFATLKGSFSED-GINEFLRELSY 116 (130)
T ss_pred CEEEEEecccCccccccCccCHH-HHHHHHHHHHc
Confidence 9999998654 444 67888854 99999988654
No 277
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.14 E-value=0.0028 Score=47.72 Aligned_cols=83 Identities=17% Similarity=0.236 Sum_probs=58.4
Q ss_pred cEEEccHHHHHHHHhccceEEEEEEcC--CChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEE
Q psy160 193 RIELITRVMLETMVEETQYLAVYFYKL--NCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVY 267 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~~~lv~F~~~--~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~ 267 (346)
....++.+++++++......++.|..+ .++.+....-.+-+|.+.+.+ .+..+-+ .+..+..+||+..+|++++
T Consensus 10 g~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~-~~~~avv~~~~e~~L~~r~gv~~~PaLvf 88 (107)
T PF07449_consen 10 GWPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPG-RFRGAVVARAAERALAARFGVRRWPALVF 88 (107)
T ss_dssp TEEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTT-SEEEEEEEHHHHHHHHHHHT-TSSSEEEE
T ss_pred CCeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhC-ccceEEECchhHHHHHHHhCCccCCeEEE
Confidence 456778888999988877765554432 134445555567777777876 5555554 6778999999999999999
Q ss_pred EeCCeEEEe
Q psy160 268 FRNGNPLIF 276 (346)
Q Consensus 268 ~~~g~~~~y 276 (346)
+++|+++..
T Consensus 89 ~R~g~~lG~ 97 (107)
T PF07449_consen 89 FRDGRYLGA 97 (107)
T ss_dssp EETTEEEEE
T ss_pred EECCEEEEE
Confidence 999987654
No 278
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.10 E-value=0.00091 Score=54.37 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=34.6
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.|+++||++|....|.+.++.+++++.++.+..+
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i 61 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAF 61 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEE
Confidence 4678999999999999999999999999997656777665
No 279
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.09 E-value=0.0028 Score=51.02 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=32.2
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.|| +.||+.|....|.+.++.+++.+.++.++.+
T Consensus 28 ~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~v 68 (149)
T cd03018 28 RKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGI 68 (149)
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 367777777 8999999999999999999886445666665
No 280
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.08 E-value=0.00091 Score=58.20 Aligned_cols=40 Identities=10% Similarity=0.235 Sum_probs=35.2
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
+++++|.||++||++|....|.+.++.+++++.++.++.+
T Consensus 99 GK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV 138 (236)
T PLN02399 99 GKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAF 138 (236)
T ss_pred CCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 5799999999999999999999999999998656776666
No 281
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.07 E-value=0.00084 Score=54.58 Aligned_cols=41 Identities=7% Similarity=0.070 Sum_probs=34.7
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM 143 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 143 (346)
.+++++|.|+++||+.|...+|.+.+++++++..++.++.+
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i 61 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAF 61 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEE
Confidence 45778999999999999999999999999986656666554
No 282
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.05 E-value=0.0016 Score=56.76 Aligned_cols=72 Identities=14% Similarity=0.323 Sum_probs=50.8
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEE------------------------------------------Ec---
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMV------------------------------------------KI--- 35 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~------------------------------------------~~--- 35 (346)
+.|+.|.||+|+++.+++.++.+. ||.+. .+
T Consensus 112 ~vFtDp~CpyCkkl~~~l~~~~~~----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~~~ 187 (232)
T PRK10877 112 TVFTDITCGYCHKLHEQMKDYNAL----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCDVD 187 (232)
T ss_pred EEEECCCChHHHHHHHHHHHHhcC----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccccch
Confidence 469999999999999998876431 11110 00
Q ss_pred --CChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHHHHhcc
Q psy160 36 --SDTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTWLTSQ 80 (346)
Q Consensus 36 --~~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~~i~~~ 80 (346)
.+.+++.++||++.|+++ |.+|..+ .|.... +.+.++|.+.
T Consensus 188 v~~~~~la~~lgi~gTPtiv-~~~G~~~--~G~~~~-~~L~~~l~~~ 230 (232)
T PRK10877 188 IADHYALGVQFGVQGTPAIV-LSNGTLV--PGYQGP-KEMKAFLDEH 230 (232)
T ss_pred HHHhHHHHHHcCCccccEEE-EcCCeEe--eCCCCH-HHHHHHHHHc
Confidence 156889999999999988 7777653 575554 4788877643
No 283
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.02 E-value=0.0047 Score=50.12 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=31.8
Q ss_pred cCCcEEEEEECC-CChhHHHHHHHHHHHHhhccCCCcEEEEe
Q psy160 103 ENEFVTVFFYET-DHKDSVKVLERLEKIDGETDNMDITFVKM 143 (346)
Q Consensus 103 ~~~~~lv~F~~~-~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 143 (346)
.+++++|.|++. ||+.|....+.+.++.+.+.+.++.++.+
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~I 70 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGI 70 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 457889999875 78889999999999988886555655543
No 284
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=97.01 E-value=0.0042 Score=51.55 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=31.1
Q ss_pred cCCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEE
Q psy160 103 ENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFV 141 (346)
Q Consensus 103 ~~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~ 141 (346)
.++.++|.|| +.||+.|...++.+.++++++...++.++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv 67 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVL 67 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEE
Confidence 3578889998 89999999999999999998854444333
No 285
>KOG2603|consensus
Probab=96.98 E-value=0.0063 Score=53.90 Aligned_cols=103 Identities=12% Similarity=0.227 Sum_probs=76.6
Q ss_pred CceeecCHHHHHHHHhcCC---cEEEEEECC----CChhHHHHHHHHHHHHhhcc-------CCCcEEEEeC---ChhhH
Q psy160 87 NEIEEVNRRMLDKLLEENE---FVTVFFYET----DHKDSVKVLERLEKIDGETD-------NMDITFVKMA---DPRYA 149 (346)
Q Consensus 87 ~~v~~l~~~~~~~~~~~~~---~~lv~F~~~----~C~~c~~~~~~~~~~a~~~~-------~~~i~~~~~~---~~~l~ 149 (346)
..|..+|++++..++.... ..+|+|.|- .|.-|.+...++.-+|.... +.++-|..+| .+++-
T Consensus 40 ~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~F 119 (331)
T KOG2603|consen 40 SGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVF 119 (331)
T ss_pred CCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHH
Confidence 3899999999999997542 358888874 59999999999999998871 1246677776 67899
Q ss_pred HhhCCCCcceEEEEecCC--c---ceec---CCcchhHHHHHHHhhccc
Q psy160 150 RKWGVTKLPAVVYFRHRF--P---SIYR---GDLSEEEEVLQWLITQKT 190 (346)
Q Consensus 150 ~~~~i~~~Ptl~~~~~g~--~---~~y~---g~~~~~~~i~~fi~~~~~ 190 (346)
++++++..|++.+|...+ + ..++ -... .+++.+|+.+.+.
T Consensus 120 q~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~-Ae~iaqfv~~~tk 167 (331)
T KOG2603|consen 120 QQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFE-AEQIAQFVADRTK 167 (331)
T ss_pred HHhcccCCCeEEEeCCCccccccCccchhhhcchh-HHHHHHHHHHhhh
Confidence 999999999999996422 1 1121 1222 3489999988764
No 286
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=96.96 E-value=0.0042 Score=49.33 Aligned_cols=41 Identities=17% Similarity=0.428 Sum_probs=33.6
Q ss_pred ccceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 208 ETQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 208 ~~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.+++++|.|| +.||+.|....+.+.++.++++..++.++.+
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~i 62 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGV 62 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 4678889999 7899999999999999999885435666666
No 287
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.92 E-value=0.0025 Score=54.14 Aligned_cols=75 Identities=17% Similarity=0.211 Sum_probs=50.4
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEE-----------------------------------------E
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFV-----------------------------------------K 142 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~-----------------------------------------~ 142 (346)
.+..++.|+.|+|++|+++.+.+.+....+ .+.+. .
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v---~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~ 153 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPNADGV---TVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAAS 153 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhccCce---EEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccc
Confidence 367899999999999999999887511111 00000 0
Q ss_pred e-----CChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHHHH
Q psy160 143 M-----ADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 143 ~-----~~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi 185 (346)
+ .+..+++++||++.|+++ +.+|.. ..|....+ .|.+++
T Consensus 154 ~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~--~~G~~~~~-~l~~~L 197 (197)
T cd03020 154 CDNPVAANLALGRQLGVNGTPTIV-LADGRV--VPGAPPAA-QLEALL 197 (197)
T ss_pred cCchHHHHHHHHHHcCCCcccEEE-ECCCeE--ecCCCCHH-HHHhhC
Confidence 0 055788999999999997 767753 56766533 666553
No 288
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=96.91 E-value=0.0046 Score=49.09 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=32.3
Q ss_pred cCCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEEe
Q psy160 103 ENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVKM 143 (346)
Q Consensus 103 ~~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 143 (346)
.+++++|.|+ +.||+.|....|.+.+++++++..++.++.+
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~i 62 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGV 62 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 5677888888 7899999999999999999885444555543
No 289
>PLN02412 probable glutathione peroxidase
Probab=96.91 E-value=0.0015 Score=53.88 Aligned_cols=40 Identities=13% Similarity=0.247 Sum_probs=35.5
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.||++||++|....|.+.++.+++++.++.++.+
T Consensus 29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv 68 (167)
T PLN02412 29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAF 68 (167)
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEe
Confidence 4789999999999999999999999999998756777777
No 290
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=96.90 E-value=0.0021 Score=53.05 Aligned_cols=53 Identities=9% Similarity=0.154 Sum_probs=36.9
Q ss_pred cCCcEEEEEECCC-ChhHHHHHHHHHHHHhhccCCCcEEEEeC----ChhhHHhhCCC
Q psy160 103 ENEFVTVFFYETD-HKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYARKWGVT 155 (346)
Q Consensus 103 ~~~~~lv~F~~~~-C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----~~~l~~~~~i~ 155 (346)
.++++++.||+.| |+.|...+|.+.++++++.+..+.-+..| ....++++++.
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~ 100 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLE 100 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCC
Confidence 4578999999999 99999999999999988743223333333 22344555554
No 291
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=96.89 E-value=0.0047 Score=49.67 Aligned_cols=39 Identities=13% Similarity=0.033 Sum_probs=31.2
Q ss_pred CcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEEe
Q psy160 105 EFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVKM 143 (346)
Q Consensus 105 ~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 143 (346)
++++|.|+ +.||+.|....|.+.++.+++.+.++.++.+
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~v 68 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGI 68 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 66677776 8999999999999999999986545655543
No 292
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.86 E-value=0.0037 Score=41.90 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=34.8
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-C----hhhHHhhCCCCcceEEE
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-D----PRYARKWGVTKLPAVVY 162 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~----~~l~~~~~i~~~Ptl~~ 162 (346)
+++|..+||++|.+....|++.. .......++ . ..+.+..|..++|++.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~-----i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKG-----IPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTT-----BEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcC-----CeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 57899999999999888885433 224444554 2 23444459999999986
No 293
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=96.84 E-value=0.0066 Score=50.13 Aligned_cols=38 Identities=11% Similarity=0.197 Sum_probs=31.5
Q ss_pred cceEEEEEEcCC-ChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFYKLN-CNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~~~~-c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.||+.| |++|....+.+.++++++. ++.++.+
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~v 82 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCI 82 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEE
Confidence 568999999999 9999999999999988874 4555555
No 294
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.84 E-value=0.0064 Score=42.00 Aligned_cols=50 Identities=18% Similarity=0.241 Sum_probs=34.7
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-ChhhHHh----hCCCCcceEEE
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYARK----WGVTKLPAVVY 162 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~l~~~----~~i~~~Ptl~~ 162 (346)
+++|+++||++|.++...+.+. +..+..+.++ ....... .++.++|++.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 5789999999999988877663 2234455555 3333333 37889999976
No 295
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=96.83 E-value=0.0076 Score=52.96 Aligned_cols=62 Identities=19% Similarity=0.362 Sum_probs=49.8
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE------------cChhhhhhCCCccccEEEEEeCC
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI------------QDPQLAKRYSIKTFPALVYFRNG 271 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------~~~~~~~~~~i~~~Pti~~~~~g 271 (346)
++.-|+.||...|+.|..+.|.+..+++++. ..+..+.+ .+...++++||+.+|++++....
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~ 223 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPK 223 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECC
Confidence 3477899999999999999999999999975 24444444 23557889999999999988644
No 296
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.81 E-value=0.0019 Score=54.83 Aligned_cols=36 Identities=8% Similarity=0.121 Sum_probs=26.0
Q ss_pred ChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHHH
Q psy160 37 DTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTW 76 (346)
Q Consensus 37 ~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~~ 76 (346)
+.+++.++||++.|+++ |.+|.. ..|.... +.+.++
T Consensus 161 ~~~l~~~~gi~gtPtii-~~~G~~--~~G~~~~-~~l~~~ 196 (197)
T cd03020 161 NLALGRQLGVNGTPTIV-LADGRV--VPGAPPA-AQLEAL 196 (197)
T ss_pred HHHHHHHcCCCcccEEE-ECCCeE--ecCCCCH-HHHHhh
Confidence 45788999999999997 777765 4565443 355554
No 297
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=96.81 E-value=0.0054 Score=51.67 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=30.6
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEE
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVK 247 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~ 247 (346)
.++++|.|| +.||+.|....+.+.++.+++.+.++.++.
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~ 70 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYS 70 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEE
Confidence 468899999 999999999999999888887543444433
No 298
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=96.80 E-value=0.0059 Score=50.69 Aligned_cols=40 Identities=10% Similarity=0.287 Sum_probs=32.3
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.+.++|.|| +.||++|....+.+.++.+++...++.++.|
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~I 69 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGV 69 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 478889999 8999999999999999988886445555555
No 299
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.80 E-value=0.0037 Score=45.23 Aligned_cols=59 Identities=25% Similarity=0.431 Sum_probs=41.6
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEc-C----hhhhhhCC--CccccEEEEEeCCeE
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ-D----PQLAKRYS--IKTFPALVYFRNGNP 273 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~-~----~~~~~~~~--i~~~Pti~~~~~g~~ 273 (346)
++.|..+||++|.+....+++++.++.+..+....+. + .++.+..+ +.++|+++ .+|+.
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~ 68 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKH 68 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEE
Confidence 5778999999999999999999877654344444442 2 24544444 47899975 57764
No 300
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=96.79 E-value=0.0075 Score=48.92 Aligned_cols=40 Identities=30% Similarity=0.358 Sum_probs=31.7
Q ss_pred cceEEEEEEcC-CChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFYKL-NCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~~~-~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.||+. ||+.|....+.+.++.+++++.++.++.|
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~I 70 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGI 70 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 46889999975 67889998899998988886545777666
No 301
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=96.79 E-value=0.0043 Score=52.22 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=29.9
Q ss_pred cCCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCc
Q psy160 103 ENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDI 138 (346)
Q Consensus 103 ~~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i 138 (346)
.+++++|.|| +.||+.|..-++.+.++.+++.+.++
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv 66 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGV 66 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCC
Confidence 3567899999 99999999999999999888854333
No 302
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=96.77 E-value=0.0048 Score=46.45 Aligned_cols=80 Identities=21% Similarity=0.283 Sum_probs=50.1
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEECC--CChhHHHHHHHHHHHHhhccCCCcEEEEe---CChhhHHhhCCCCcceEEE
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYET--DHKDSVKVLERLEKIDGETDNMDITFVKM---ADPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~~--~C~~c~~~~~~~~~~a~~~~~~~i~~~~~---~~~~l~~~~~i~~~Ptl~~ 162 (346)
....++.++++.++......+++|... -++.+....-.+=++.+.+.+. +..+.+ .+..+..+||+..+|++++
T Consensus 10 g~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~-~~~avv~~~~e~~L~~r~gv~~~PaLvf 88 (107)
T PF07449_consen 10 GWPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGR-FRGAVVARAAERALAARFGVRRWPALVF 88 (107)
T ss_dssp TEEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTS-EEEEEEEHHHHHHHHHHHT-TSSSEEEE
T ss_pred CCeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCc-cceEEECchhHHHHHHHhCCccCCeEEE
Confidence 456778889999998877665555432 1334444333344444455432 322222 3788999999999999999
Q ss_pred EecCCc
Q psy160 163 FRHRFP 168 (346)
Q Consensus 163 ~~~g~~ 168 (346)
+++|+.
T Consensus 89 ~R~g~~ 94 (107)
T PF07449_consen 89 FRDGRY 94 (107)
T ss_dssp EETTEE
T ss_pred EECCEE
Confidence 999863
No 303
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.74 E-value=0.0055 Score=53.53 Aligned_cols=62 Identities=24% Similarity=0.392 Sum_probs=49.0
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE------------cChhhhhhCCCccccEEEEEeCC
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI------------QDPQLAKRYSIKTFPALVYFRNG 271 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------~~~~~~~~~~i~~~Pti~~~~~g 271 (346)
++.-|++||.+.|+.|..+.|.+..+++++. ..+..+.+ .+...+++++|..+|++++....
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg-~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~ 216 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG-LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPK 216 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECC
Confidence 3467899999999999999999999999975 24444444 23446778999999999998644
No 304
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=96.72 E-value=0.011 Score=45.54 Aligned_cols=83 Identities=12% Similarity=0.137 Sum_probs=54.7
Q ss_pred hcCCcEEEEEECC----CChhHHHHHHHHHHHHhhccCCCcEEEEeC-----ChhhHHhhCCCCcceEEEEe--cCC---
Q psy160 102 EENEFVTVFFYET----DHKDSVKVLERLEKIDGETDNMDITFVKMA-----DPRYARKWGVTKLPAVVYFR--HRF--- 167 (346)
Q Consensus 102 ~~~~~~lv~F~~~----~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-----~~~l~~~~~i~~~Ptl~~~~--~g~--- 167 (346)
++.+..+|++|++ ||..|++.+.. .++.+.++. ++.+...| ...++..+++.+||++.++. +++
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~-~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~v 92 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINT-RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTI 92 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHc-CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEE
Confidence 4558899999999 78888655421 222223322 24444333 35699999999999999983 233
Q ss_pred cceecCCcchhHHHHHHHhh
Q psy160 168 PSIYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 168 ~~~y~g~~~~~~~i~~fi~~ 187 (346)
..+..|..+.+ +++..+..
T Consensus 93 v~~i~G~~~~~-~ll~~L~~ 111 (116)
T cd02991 93 VGRLEGLIQPE-DLINRLTF 111 (116)
T ss_pred EEEEeCCCCHH-HHHHHHHH
Confidence 33578988855 78777654
No 305
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=96.72 E-value=0.0082 Score=48.82 Aligned_cols=94 Identities=13% Similarity=0.085 Sum_probs=54.2
Q ss_pred HHHHHhccCCccccCceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHH-H--HHHHhhccCCCcEEEEeC---Ch
Q psy160 73 ILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLER-L--EKIDGETDNMDITFVKMA---DP 146 (346)
Q Consensus 73 i~~~i~~~~~p~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~-~--~~~a~~~~~~~i~~~~~~---~~ 146 (346)
-.-|+...... +-.=...+++.++..-+++++++|.++.+||+.|..|..+ | .++|..++.. +.-+++| .+
T Consensus 8 ~Spyl~~ha~~--~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~-FI~VkvDree~P 84 (163)
T PF03190_consen 8 KSPYLRQHAHN--PVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN-FIPVKVDREERP 84 (163)
T ss_dssp --HHHHTTTTS--SS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH--EEEEEETTT-H
T ss_pred CCHHHHHhccC--CCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC-EEEEEeccccCc
Confidence 34466655543 1122355678899998999999999999999999988863 3 3455555332 4445555 57
Q ss_pred hhHHhh--------CCCCcceEEEEec-CCcc
Q psy160 147 RYARKW--------GVTKLPAVVYFRH-RFPS 169 (346)
Q Consensus 147 ~l~~~~--------~i~~~Ptl~~~~~-g~~~ 169 (346)
++...| |..++|+.+|... |+++
T Consensus 85 did~~y~~~~~~~~~~gGwPl~vfltPdg~p~ 116 (163)
T PF03190_consen 85 DIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPF 116 (163)
T ss_dssp HHHHHHHHHHHHHHS---SSEEEEE-TTS-EE
T ss_pred cHHHHHHHHHHHhcCCCCCCceEEECCCCCee
Confidence 787777 7889999998875 5443
No 306
>KOG3414|consensus
Probab=96.72 E-value=0.018 Score=43.91 Aligned_cols=75 Identities=19% Similarity=0.291 Sum_probs=59.2
Q ss_pred HHHHHHHhc--CCcEEEEEECCCChhHHHHHHHHHHHHhhccCC-CcEEEEeC-ChhhHHhhCCCCcceEEEEecCCcc
Q psy160 95 RMLDKLLEE--NEFVTVFFYETDHKDSVKVLERLEKIDGETDNM-DITFVKMA-DPRYARKWGVTKLPAVVYFRHRFPS 169 (346)
Q Consensus 95 ~~~~~~~~~--~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~-~i~~~~~~-~~~l~~~~~i~~~Ptl~~~~~g~~~ 169 (346)
...++.+.+ .+.+++-|...|-+.|.++-..+.++++.+.+. .|..+.++ -+.+.+-|++...||+++|-+++..
T Consensus 12 ~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHm 90 (142)
T KOG3414|consen 12 WEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHM 90 (142)
T ss_pred HHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCceE
Confidence 445555533 367888999999999999999999999998554 35666666 5678889999999999999887743
No 307
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=96.71 E-value=0.0038 Score=49.96 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=37.8
Q ss_pred cCCcEEEEEECCC-ChhHHHHHHHHHHHHhhccCCCcEEEE--eCCh----hhHHhhCCCCcc
Q psy160 103 ENEFVTVFFYETD-HKDSVKVLERLEKIDGETDNMDITFVK--MADP----RYARKWGVTKLP 158 (346)
Q Consensus 103 ~~~~~lv~F~~~~-C~~c~~~~~~~~~~a~~~~~~~i~~~~--~~~~----~l~~~~~i~~~P 158 (346)
.++++++.||+.| |++|...+|.+.++.+++.+ +.++. +|.. ...+++++..+|
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~--~~vi~Is~d~~~~~~~~~~~~~~~~~~ 85 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDN--TVVLTISADLPFAQKRWCGAEGVDNVT 85 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCC--CEEEEEECCCHHHHHHHHHhcCCCCce
Confidence 4578999999998 69999999999999998754 44444 4432 233444554455
No 308
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.71 E-value=0.005 Score=43.98 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=37.5
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---C-h----hhHHhhCCCCcceEEEEecCC
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---D-P----RYARKWGVTKLPAVVYFRHRF 167 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~-~----~l~~~~~i~~~Ptl~~~~~g~ 167 (346)
++.|+++||++|..+.+.+.++... ..+..++ . . .+.+..|..++|++ |-+|+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~ 62 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK-----PAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGK 62 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC-----cEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCE
Confidence 5789999999999999999887653 3444433 2 1 24456788999997 33553
No 309
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=96.71 E-value=0.0073 Score=46.18 Aligned_cols=80 Identities=14% Similarity=0.085 Sum_probs=59.8
Q ss_pred EEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhh---cCcCceEEEEE---cChhhhhhCCCcc--ccEE
Q psy160 194 IELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDE---CDIYGIHMVKI---QDPQLAKRYSIKT--FPAL 265 (346)
Q Consensus 194 v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~---~~~~~i~~~~i---~~~~~~~~~~i~~--~Pti 265 (346)
|.+++.++...+..+..+..+.|+.+ ..-..+.+.+.++|++ +++ ++.|+.+ ......+.||++. +|.+
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kg-ki~Fv~~d~~~~~~~~~~fgl~~~~~P~i 77 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKG-AINFLTADGDKFRHPLLHLGKTPADLPVI 77 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCc-eEEEEEEechHhhhHHHHcCCCHhHCCEE
Confidence 35678888888888877777777732 3346789999999999 997 7888888 2334888999986 8999
Q ss_pred EEEeCCeEEEe
Q psy160 266 VYFRNGNPLIF 276 (346)
Q Consensus 266 ~~~~~g~~~~y 276 (346)
++........|
T Consensus 78 ~i~~~~~~~Ky 88 (111)
T cd03072 78 AIDSFRHMYLF 88 (111)
T ss_pred EEEcchhcCcC
Confidence 99865432334
No 310
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.70 E-value=0.0013 Score=47.04 Aligned_cols=67 Identities=15% Similarity=0.264 Sum_probs=43.1
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC---C-h----HHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKIS---D-T----EAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEK 72 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~-~----~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~ 72 (346)
+.|+++||++|+.+.+.|.++...+ .+..++ + . .+.+.+|+.++|++ |-+|.. -|+. ++
T Consensus 3 ~~y~~~~Cp~C~~~~~~l~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~---igg~---~~ 69 (82)
T cd03419 3 VVFSKSYCPYCKRAKSLLKELGVKP-----AVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKF---IGGC---DD 69 (82)
T ss_pred EEEEcCCCHHHHHHHHHHHHcCCCc-----EEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEE---EcCH---HH
Confidence 4689999999999998888775533 233322 2 1 34456789999986 556654 2322 45
Q ss_pred HHHHHhcc
Q psy160 73 ILTWLTSQ 80 (346)
Q Consensus 73 i~~~i~~~ 80 (346)
+.+..++.
T Consensus 70 ~~~~~~~g 77 (82)
T cd03419 70 LMALHKSG 77 (82)
T ss_pred HHHHHHcC
Confidence 66665544
No 311
>PTZ00256 glutathione peroxidase; Provisional
Probab=96.66 E-value=0.0032 Score=52.87 Aligned_cols=38 Identities=11% Similarity=0.219 Sum_probs=31.7
Q ss_pred eEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 211 YLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 211 ~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.+++.++|+||++|....|.+.++.+++++.++.++.+
T Consensus 43 vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~v 80 (183)
T PTZ00256 43 AIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAF 80 (183)
T ss_pred EEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEE
Confidence 44556799999999999999999999997656777766
No 312
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=96.64 E-value=0.014 Score=43.71 Aligned_cols=76 Identities=22% Similarity=0.345 Sum_probs=54.0
Q ss_pred CHHHHHHHHhc--CCcEEEEEECCCChhHHHHHHHHHHHHhhccC-CCcEEEEeC-----ChhhHHhhCCC-CcceEEEE
Q psy160 93 NRRMLDKLLEE--NEFVTVFFYETDHKDSVKVLERLEKIDGETDN-MDITFVKMA-----DPRYARKWGVT-KLPAVVYF 163 (346)
Q Consensus 93 ~~~~~~~~~~~--~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~-~~i~~~~~~-----~~~l~~~~~i~-~~Ptl~~~ 163 (346)
+.+.+++++.. .++++++=.+..|+-+.....+|++....... ..+.++++- ...++.+|||. .-|.++++
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili 85 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILI 85 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEE
Confidence 57889999877 56777776888999999999999998887643 445555542 45688999996 77999999
Q ss_pred ecCCc
Q psy160 164 RHRFP 168 (346)
Q Consensus 164 ~~g~~ 168 (346)
++|+.
T Consensus 86 ~~g~~ 90 (105)
T PF11009_consen 86 KNGKV 90 (105)
T ss_dssp ETTEE
T ss_pred ECCEE
Confidence 99974
No 313
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=96.63 E-value=0.013 Score=49.29 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=31.1
Q ss_pred cCCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEE
Q psy160 103 ENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFV 141 (346)
Q Consensus 103 ~~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~ 141 (346)
.++++++.|| +.||+.|..-++.+.+..+++...++.++
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vi 69 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVY 69 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEE
Confidence 3467788888 99999999999999999999855444443
No 314
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=96.59 E-value=0.0078 Score=43.69 Aligned_cols=73 Identities=14% Similarity=0.233 Sum_probs=47.0
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-----ChhhHHhhCC--CCcceEEEEecCCcceecCCcchhHH
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-----DPRYARKWGV--TKLPAVVYFRHRFPSIYRGDLSEEEE 180 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-----~~~l~~~~~i--~~~Ptl~~~~~g~~~~y~g~~~~~~~ 180 (346)
+++|+.+||++|.+....+.++.....+..+..+.++ ...+....|- ..+|+|++ +|+ +-|..+ +
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~---~igG~~---d 73 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEK---HVGGCT---D 73 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCE---EecCHH---H
Confidence 6789999999999999988887654322223334443 1235556663 78999954 453 334432 6
Q ss_pred HHHHHhhc
Q psy160 181 VLQWLITQ 188 (346)
Q Consensus 181 i~~fi~~~ 188 (346)
|.+++.+.
T Consensus 74 l~~~~~~~ 81 (86)
T TIGR02183 74 FEQLVKEN 81 (86)
T ss_pred HHHHHHhc
Confidence 88887664
No 315
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=96.49 E-value=0.06 Score=40.79 Aligned_cols=94 Identities=9% Similarity=0.211 Sum_probs=67.4
Q ss_pred eec-CHHHHHHHHhcC-CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEecC-
Q psy160 90 EEV-NRRMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHR- 166 (346)
Q Consensus 90 ~~l-~~~~~~~~~~~~-~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~g- 166 (346)
.++ +.++++.++... +..+|-|+..--+ .....+.++|..++.. ..|+.+....+..++++. .|++++|+..
T Consensus 3 ~~i~s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd-~~F~~t~~~~~~~~~~~~-~~~vvl~rp~~ 77 (107)
T cd03068 3 KQLQTLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLRED-YKFHHTFDSEIFKSLKVS-PGQLVVFQPEK 77 (107)
T ss_pred eEcCCHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccC-CEEEEEChHHHHHhcCCC-CCceEEECcHH
Confidence 344 567889988776 7777777765322 4567788999987543 788888888899999886 5778887432
Q ss_pred -------CcceecCC-cchhHHHHHHHhhc
Q psy160 167 -------FPSIYRGD-LSEEEEVLQWLITQ 188 (346)
Q Consensus 167 -------~~~~y~g~-~~~~~~i~~fi~~~ 188 (346)
....|+|. ...+++|..|+..+
T Consensus 78 ~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 78 FQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred HhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 14568887 66664599998753
No 316
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=96.47 E-value=0.016 Score=48.70 Aligned_cols=64 Identities=14% Similarity=0.287 Sum_probs=46.0
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE----------------------------cChhhhhhCCC
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI----------------------------QDPQLAKRYSI 259 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i----------------------------~~~~~~~~~~i 259 (346)
.++++|.|| +.||+.|....+.+.++..++...++.+..+ .+..+++.||+
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv 110 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN 110 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCC
Confidence 457888899 9999999999999999988886444444444 23456677777
Q ss_pred ----ccc--cEEEEEe-CCe
Q psy160 260 ----KTF--PALVYFR-NGN 272 (346)
Q Consensus 260 ----~~~--Pti~~~~-~g~ 272 (346)
.+. |+.+++. +|+
T Consensus 111 ~~~~~g~~~r~tfIID~~G~ 130 (187)
T PRK10382 111 MREDEGLADRATFVVDPQGI 130 (187)
T ss_pred CcccCCceeeEEEEECCCCE
Confidence 245 7777775 565
No 317
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.41 E-value=0.014 Score=38.93 Aligned_cols=54 Identities=22% Similarity=0.389 Sum_probs=36.3
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-cCh----hhhhhCCCccccEEEEEeCCeE
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDP----QLAKRYSIKTFPALVYFRNGNP 273 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~----~~~~~~~i~~~Pti~~~~~g~~ 273 (346)
++.|..+||++|......|.+..- ......+ .++ ++.+..+..++|++.+ +|+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i-----~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGI-----PYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTB-----EEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCC-----eeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 467899999999998888865531 3444555 232 2333448999999876 6653
No 318
>PTZ00256 glutathione peroxidase; Provisional
Probab=96.40 E-value=0.0053 Score=51.49 Aligned_cols=42 Identities=5% Similarity=0.017 Sum_probs=32.7
Q ss_pred cCCcE-EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC
Q psy160 103 ENEFV-TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA 144 (346)
Q Consensus 103 ~~~~~-lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~ 144 (346)
.++++ ++.++++||+.|.+.+|.++++.+++++.++.++.++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs 81 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFP 81 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEe
Confidence 34544 5566899999999999999999999866566666553
No 319
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=96.37 E-value=0.0092 Score=47.69 Aligned_cols=38 Identities=11% Similarity=0.190 Sum_probs=31.8
Q ss_pred cceEEEEEEcCC-ChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFYKLN-CNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~~~~-c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.||+.| |++|....+.+.++.++++ ++.++.|
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~I 64 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTI 64 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEE
Confidence 568999999988 6999999999999998875 4666665
No 320
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.37 E-value=0.0022 Score=44.43 Aligned_cols=49 Identities=20% Similarity=0.346 Sum_probs=31.5
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC-ChHHH----HhcCCCCCCeEEE
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKIS-DTEAA----AKYNIINLPSLVY 54 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~~c----~~~~i~~~Ptl~~ 54 (346)
+.|+++||++|.++...+++.. ..+..+.++ +.+.. ...++.++|++++
T Consensus 3 ~l~~~~~c~~c~~~~~~l~~~~-----i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 3 TVYTKPDCPYCKATKRFLDERG-----IPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEeCCCChhHHHHHHHHHHCC-----CCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 4688999999999887666531 123334444 33333 3346889999876
No 321
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=96.26 E-value=0.096 Score=40.62 Aligned_cols=76 Identities=14% Similarity=0.249 Sum_probs=56.2
Q ss_pred cHHHHHHHHh--ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCcccc-EEEEEeCC
Q psy160 198 TRVMLETMVE--ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFP-ALVYFRNG 271 (346)
Q Consensus 198 ~~~~~~~~~~--~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~P-ti~~~~~g 271 (346)
++-..++++. +++.++|-|..+|-+.|.++...+.++|+++++ -..++.+ +-+++.+.|.+. -| |+++|-++
T Consensus 7 s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~-~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rn 84 (133)
T PF02966_consen 7 SGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN-FAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRN 84 (133)
T ss_dssp SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTTHCCHHHTTS--SSEEEEEEETT
T ss_pred ccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc-ceEEEEEEcccchhhhcccccC-CCeEEEEEecC
Confidence 4567777543 467899999999999999999999999999986 3444444 567788899998 57 46666566
Q ss_pred eEEE
Q psy160 272 NPLI 275 (346)
Q Consensus 272 ~~~~ 275 (346)
+.+.
T Consensus 85 khm~ 88 (133)
T PF02966_consen 85 KHMM 88 (133)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 6544
No 322
>PHA03050 glutaredoxin; Provisional
Probab=96.25 E-value=0.025 Score=42.93 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=40.9
Q ss_pred HHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCC--------hhhHHhhCCCCcceEEE
Q psy160 97 LDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD--------PRYARKWGVTKLPAVVY 162 (346)
Q Consensus 97 ~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~--------~~l~~~~~i~~~Ptl~~ 162 (346)
.++++.+++ ++.|..+|||+|.+....|.+..-.. ..+..+.++. ..+.+.-|-+.+|+|++
T Consensus 6 v~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~--~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI 75 (108)
T PHA03050 6 VQQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKR--GAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF 75 (108)
T ss_pred HHHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCc--CCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence 445555543 78999999999999888887764321 1244555542 23555668889999954
No 323
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=96.22 E-value=0.022 Score=43.87 Aligned_cols=75 Identities=15% Similarity=0.209 Sum_probs=48.9
Q ss_pred HHHhccceEEEEEEcC----CChhhHHHH--HHHHHHHhhcCcCceEEEEE-----cChhhhhhCCCccccEEEEEe--C
Q psy160 204 TMVEETQYLAVYFYKL----NCNICDQIL--EGLEKVDDECDIYGIHMVKI-----QDPQLAKRYSIKTFPALVYFR--N 270 (346)
Q Consensus 204 ~~~~~~~~~lv~F~~~----~c~~c~~~~--~~~~~la~~~~~~~i~~~~i-----~~~~~~~~~~i~~~Pti~~~~--~ 270 (346)
...++.|.++|++|++ ||..|+... |.+.+. ++. ++.+... +...++..++++++|+++++- +
T Consensus 12 ~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~---ln~-~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~ 87 (116)
T cd02991 12 DAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEY---INT-RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKD 87 (116)
T ss_pred HHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHH---HHc-CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecC
Confidence 3455678999999999 888886442 333333 333 4443333 345689999999999998882 3
Q ss_pred Ce---EEEeecCccc
Q psy160 271 GN---PLIFEGENKI 282 (346)
Q Consensus 271 g~---~~~y~g~~~~ 282 (346)
++ ..+..|..+.
T Consensus 88 ~~~~vv~~i~G~~~~ 102 (116)
T cd02991 88 NRMTIVGRLEGLIQP 102 (116)
T ss_pred CceEEEEEEeCCCCH
Confidence 33 2346777753
No 324
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=96.20 E-value=0.008 Score=47.84 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=29.4
Q ss_pred cCCcEEEEEECCCChh-HHHHHHHHHHHHhhccC
Q psy160 103 ENEFVTVFFYETDHKD-SVKVLERLEKIDGETDN 135 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~-c~~~~~~~~~~a~~~~~ 135 (346)
.+++++|.|+++||+. |...++.+.++.+.+..
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~ 54 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGA 54 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhH
Confidence 4678999999999997 99999999999998854
No 325
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.14 E-value=0.028 Score=49.68 Aligned_cols=80 Identities=8% Similarity=0.132 Sum_probs=52.0
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEE------------------------------------------
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVK------------------------------------------ 142 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~------------------------------------------ 142 (346)
+..++.|..|.|++|+++.+++....+. .+..+.+.-
T Consensus 118 k~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~~~ 196 (251)
T PRK11657 118 PRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPPAS 196 (251)
T ss_pred CeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcccc
Confidence 5679999999999999998887654332 111111110
Q ss_pred eC---------ChhhHHhhCCCCcceEEEEec-CCcceecCCcchhHHHHHHHh
Q psy160 143 MA---------DPRYARKWGVTKLPAVVYFRH-RFPSIYRGDLSEEEEVLQWLI 186 (346)
Q Consensus 143 ~~---------~~~l~~~~~i~~~Ptl~~~~~-g~~~~y~g~~~~~~~i~~fi~ 186 (346)
.. +..+.+++||++.|++++-.. |......|....+ .|.+.+.
T Consensus 197 ~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~-~L~~~l~ 249 (251)
T PRK11657 197 IPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPA-QLAEIMG 249 (251)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHH-HHHHHhC
Confidence 00 233677899999999998753 5544567877633 6766653
No 326
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=96.14 E-value=0.01 Score=47.24 Aligned_cols=41 Identities=22% Similarity=0.338 Sum_probs=34.5
Q ss_pred ccceEEEEEEcCCChh-hHHHHHHHHHHHhhcCcC---ceEEEEE
Q psy160 208 ETQYLAVYFYKLNCNI-CDQILEGLEKVDDECDIY---GIHMVKI 248 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~-c~~~~~~~~~la~~~~~~---~i~~~~i 248 (346)
..++++|.||++||++ |....+.+.++.+++... ++.++.+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~v 65 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFI 65 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEE
Confidence 4578999999999998 999999999999988653 3777776
No 327
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.09 E-value=0.023 Score=38.89 Aligned_cols=50 Identities=14% Similarity=0.200 Sum_probs=34.0
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-C----hhhHHhhCCCCcceEEE
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-D----PRYARKWGVTKLPAVVY 162 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~----~~l~~~~~i~~~Ptl~~ 162 (346)
++.|+++||++|++..+.+.+..- .+...+++ . ..+.+..+...+|++.+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i-----~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGI-----EFEEIDILEDGELREELKELSGWPTVPQIFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCC-----cEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 578999999999999988877652 23444443 2 23444567778887743
No 328
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=96.06 E-value=0.018 Score=41.77 Aligned_cols=59 Identities=20% Similarity=0.313 Sum_probs=39.2
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEc-----ChhhhhhCCC--ccccEEEEEeCCeE
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ-----DPQLAKRYSI--KTFPALVYFRNGNP 273 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~-----~~~~~~~~~i--~~~Pti~~~~~g~~ 273 (346)
++.|..+||++|.++...+.++.....+..+....+. ..++.+..+- .++|++. -+|+.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~ 67 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKH 67 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEE
Confidence 5678899999999999999998755432233334442 2245555563 7899983 46654
No 329
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=96.04 E-value=0.086 Score=39.94 Aligned_cols=78 Identities=8% Similarity=0.114 Sum_probs=58.2
Q ss_pred ccHHHHHHHHhcc-ceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEcChhhhhhCCCccccEEEEEeCC----
Q psy160 197 ITRVMLETMVEET-QYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNG---- 271 (346)
Q Consensus 197 l~~~~~~~~~~~~-~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~i~~~Pti~~~~~g---- 271 (346)
-+.+++++++... +..+|.|+..--+ .....|.++|..+++ +..|+.+.+..+.+++++. .|.+++|++.
T Consensus 6 ~s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd-d~~F~~t~~~~~~~~~~~~-~~~vvl~rp~~~~~ 80 (107)
T cd03068 6 QTLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLRE-DYKFHHTFDSEIFKSLKVS-PGQLVVFQPEKFQS 80 (107)
T ss_pred CCHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhccc-CCEEEEEChHHHHHhcCCC-CCceEEECcHHHhh
Confidence 3567788887766 7888888875433 567889999999975 7889888788888899886 4888888543
Q ss_pred ----eEEEeecC
Q psy160 272 ----NPLIFEGE 279 (346)
Q Consensus 272 ----~~~~y~g~ 279 (346)
+...|.|.
T Consensus 81 k~e~~~~~~~~~ 92 (107)
T cd03068 81 KYEPKSHVLNKK 92 (107)
T ss_pred hcCcceeeeecc
Confidence 24567665
No 330
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=95.99 E-value=0.025 Score=40.19 Aligned_cols=68 Identities=18% Similarity=0.161 Sum_probs=43.8
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC----ChhhHHhhCCCCcceEEEEecCCcceecCCcchhHH
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEE 180 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~ 180 (346)
+.-+++|+.+||++|.+....|.+.. .....+.++ ...+....|...+|++.+ +|+ +-|..+ +
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~g-----i~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~---~igG~~---~ 73 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEKG-----YDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGK---LIGGSD---E 73 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHcC-----CCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCE---EEcCHH---H
Confidence 44578999999999999888886532 223344444 124555678899999964 553 233332 5
Q ss_pred HHHHH
Q psy160 181 VLQWL 185 (346)
Q Consensus 181 i~~fi 185 (346)
|.+|+
T Consensus 74 l~~~l 78 (79)
T TIGR02190 74 LEAYL 78 (79)
T ss_pred HHHHh
Confidence 66665
No 331
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=95.98 E-value=0.012 Score=49.20 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=33.1
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.|+|+||+.|.. .+.++++.+++++.++.+..+
T Consensus 25 GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~ 63 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGF 63 (183)
T ss_pred CCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEe
Confidence 479999999999999964 789999999997656777666
No 332
>PRK13190 putative peroxiredoxin; Provisional
Probab=95.95 E-value=0.044 Score=46.71 Aligned_cols=34 Identities=3% Similarity=-0.043 Sum_probs=25.5
Q ss_pred CCcEEE-EEECCCChhHHHHHHHHHHHHhhccCCC
Q psy160 104 NEFVTV-FFYETDHKDSVKVLERLEKIDGETDNMD 137 (346)
Q Consensus 104 ~~~~lv-~F~~~~C~~c~~~~~~~~~~a~~~~~~~ 137 (346)
++.+++ .|.+.||+.|..-++.+.++.+++++.+
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~ 61 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG 61 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 443433 5779999999999999999888874433
No 333
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=95.93 E-value=0.042 Score=41.95 Aligned_cols=77 Identities=10% Similarity=0.062 Sum_probs=52.1
Q ss_pred EccHHHHHHHHhccceEEEEEE----cCCChhhHHHHHHHHHHHhhcC-cCceEEEEE---cChhhhhhCCCcc----cc
Q psy160 196 LITRVMLETMVEETQYLAVYFY----KLNCNICDQILEGLEKVDDECD-IYGIHMVKI---QDPQLAKRYSIKT----FP 263 (346)
Q Consensus 196 ~l~~~~~~~~~~~~~~~lv~F~----~~~c~~c~~~~~~~~~la~~~~-~~~i~~~~i---~~~~~~~~~~i~~----~P 263 (346)
.++.++..... ..+.++.|+ +..-..-..+...+.++|+.++ + ++.|+.+ ......+.||+++ .|
T Consensus 3 ~~~~en~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g-ki~Fv~~D~~~~~~~l~~fgl~~~~~~~P 79 (111)
T cd03073 3 HRTKDNRAQFT--KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR-KLNFAVADKEDFSHELEEFGLDFSGGEKP 79 (111)
T ss_pred eeccchHHHhc--cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC-eEEEEEEcHHHHHHHHHHcCCCcccCCCC
Confidence 45666666664 334455544 2222334678999999999999 6 7888888 3344788999974 99
Q ss_pred EEEEEeCCeEEEe
Q psy160 264 ALVYFRNGNPLIF 276 (346)
Q Consensus 264 ti~~~~~g~~~~y 276 (346)
++++..... .+|
T Consensus 80 ~~~i~~~~~-~KY 91 (111)
T cd03073 80 VVAIRTAKG-KKY 91 (111)
T ss_pred EEEEEeCCC-Ccc
Confidence 999986433 345
No 334
>PRK13190 putative peroxiredoxin; Provisional
Probab=95.91 E-value=0.047 Score=46.56 Aligned_cols=63 Identities=14% Similarity=0.286 Sum_probs=41.9
Q ss_pred ceEEE-EEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE------------------------------cChhhhhhCC
Q psy160 210 QYLAV-YFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI------------------------------QDPQLAKRYS 258 (346)
Q Consensus 210 ~~~lv-~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------------------------~~~~~~~~~~ 258 (346)
+.++| .|++.||+.|....+.+.++..+++..++.++.+ .+..+++.||
T Consensus 28 k~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~yg 107 (202)
T PRK13190 28 KWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYN 107 (202)
T ss_pred CEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcC
Confidence 44444 5789999999988888888877775333333332 2345666777
Q ss_pred Cc------cccEEEEEe-CCe
Q psy160 259 IK------TFPALVYFR-NGN 272 (346)
Q Consensus 259 i~------~~Pti~~~~-~g~ 272 (346)
+. ..|+.+++. +|+
T Consensus 108 v~~~~~g~~~p~~fiId~~G~ 128 (202)
T PRK13190 108 LIDENSGATVRGVFIIDPNQI 128 (202)
T ss_pred CccccCCcEEeEEEEECCCCE
Confidence 63 478888885 554
No 335
>PRK15000 peroxidase; Provisional
Probab=95.89 E-value=0.042 Score=46.76 Aligned_cols=40 Identities=18% Similarity=0.334 Sum_probs=31.8
Q ss_pred cceEEEEEEc-CCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFYK-LNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~~-~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.+.++|.||+ .||+.|....+.+.++.++++..++.++.+
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigv 74 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGV 74 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 4688999998 499999999999999988886545555554
No 336
>PRK15000 peroxidase; Provisional
Probab=95.85 E-value=0.031 Score=47.55 Aligned_cols=39 Identities=15% Similarity=0.132 Sum_probs=31.0
Q ss_pred cCCcEEEEEECC-CChhHHHHHHHHHHHHhhccCCCcEEE
Q psy160 103 ENEFVTVFFYET-DHKDSVKVLERLEKIDGETDNMDITFV 141 (346)
Q Consensus 103 ~~~~~lv~F~~~-~C~~c~~~~~~~~~~a~~~~~~~i~~~ 141 (346)
.++.+++.||+. ||+.|..-++.+.+.++++.+.++.++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vi 72 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVV 72 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 356788899985 899999999999999999855444444
No 337
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=95.76 E-value=0.03 Score=49.41 Aligned_cols=39 Identities=8% Similarity=0.021 Sum_probs=28.0
Q ss_pred HHHHhcCCCCCCeEEEEe-CCceeeecCCCCCHHHHHHHHh
Q psy160 39 EAAAKYNIINLPSLVYFR-KQVPLLYDGDLFDEEKILTWLT 78 (346)
Q Consensus 39 ~~c~~~~i~~~Ptl~~f~-~~~~~~y~G~~~~~~~i~~~i~ 78 (346)
++..++||++.|++++-. +|.+....|-... +.+.+.+.
T Consensus 210 ~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~-~~L~~~l~ 249 (251)
T PRK11657 210 KLMDDLGANATPAIYYMDKDGTLQQVVGLPDP-AQLAEIMG 249 (251)
T ss_pred HHHHHcCCCCCCEEEEECCCCCEEEecCCCCH-HHHHHHhC
Confidence 467789999999988865 4665566786655 46766654
No 338
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.75 E-value=0.006 Score=41.94 Aligned_cols=53 Identities=19% Similarity=0.302 Sum_probs=32.9
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC-Ch----HHHHhcCCCCCCeEEEEeCCce
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKIS-DT----EAAAKYNIINLPSLVYFRKQVP 60 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~----~~c~~~~i~~~Ptl~~f~~~~~ 60 (346)
+.|+++||++|+++...|++..- .+..+.++ +. .+....+....|++ |.+|..
T Consensus 3 ~ly~~~~Cp~C~~~~~~L~~~~i-----~~~~~di~~~~~~~~~l~~~~~~~~~P~~--~~~~~~ 60 (72)
T cd02066 3 VVFSKSTCPYCKRAKRLLESLGI-----EFEEIDILEDGELREELKELSGWPTVPQI--FINGEF 60 (72)
T ss_pred EEEECCCCHHHHHHHHHHHHcCC-----cEEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEE
Confidence 36888999999999887776531 12233333 22 33445677788876 445543
No 339
>PHA03050 glutaredoxin; Provisional
Probab=95.70 E-value=0.061 Score=40.83 Aligned_cols=66 Identities=18% Similarity=0.366 Sum_probs=42.9
Q ss_pred HHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEc----C----hhhhhhCCCccccEEEEEeCCeE
Q psy160 202 LETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ----D----PQLAKRYSIKTFPALVYFRNGNP 273 (346)
Q Consensus 202 ~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~----~----~~~~~~~~i~~~Pti~~~~~g~~ 273 (346)
.++++++++ ++.|..+||++|......|.+..-... .+....++ . ..+.+.-|-+++|++ |-+|+.
T Consensus 6 v~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~~--~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI~g~~ 79 (108)
T PHA03050 6 VQQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKRG--AYEIVDIKEFKPENELRDYFEQITGGRTVPRI--FFGKTS 79 (108)
T ss_pred HHHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCcC--CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--EECCEE
Confidence 344555544 567899999999999999988864322 34444442 2 234555677889998 555654
No 340
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.58 E-value=0.035 Score=39.33 Aligned_cols=50 Identities=12% Similarity=0.242 Sum_probs=34.1
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-Ch----hhHHhhCCCCcceEEE
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DP----RYARKWGVTKLPAVVY 162 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~----~l~~~~~i~~~Ptl~~ 162 (346)
++.|..+||++|.+....+++.. ..+....++ .+ .+.+..|...+|++.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~-----i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i 55 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKG-----VTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI 55 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcC-----CCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE
Confidence 36788999999999998887643 234455554 22 3344557888999843
No 341
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=95.57 E-value=0.019 Score=48.07 Aligned_cols=40 Identities=10% Similarity=0.135 Sum_probs=32.5
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM 143 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 143 (346)
.++++||.|+|+||+.|++ .|.++++.++++..++.++.+
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~ 63 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGF 63 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEe
Confidence 4588999999999999975 889999999986655555543
No 342
>KOG2640|consensus
Probab=95.57 E-value=0.007 Score=53.62 Aligned_cols=120 Identities=14% Similarity=0.199 Sum_probs=85.0
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC----ChhhHHhhCCCCcceEEEEecCCcceecCCcchhH
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEE 179 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~ 179 (346)
..++-..||+.||+..+...|++.-....+.. |....++ -+++..++++.+.|++.+-...-+..|.|.++-.
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~--i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~~~~~~~r~l~- 152 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS--IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCPASYRGERDLA- 152 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccc--cccccHHHHhhcccchhccccccCCcceeeccccchhhcccccHH-
Confidence 45788999999999999999998888776642 3333343 5678899999999999998776688899998844
Q ss_pred HHHHHHhhccccCcEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHH
Q psy160 180 EVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKV 234 (346)
Q Consensus 180 ~i~~fi~~~~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~l 234 (346)
+|++|..+...-.+. -++.+-.......+|.+||++-....|...-+
T Consensus 153 sLv~fy~~i~~~~v~--------ie~~d~~~~~~~~ry~~~~~~t~l~~p~~~~~ 199 (319)
T KOG2640|consen 153 SLVNFYTEITPMSVL--------IEILDCTSCLEPVRYVPEGGPTILLAPDGNLF 199 (319)
T ss_pred HHHHHHHhhccchhc--------ccccCcccceeeeEeccccCcccccCcCCCcc
Confidence 999998776532211 11222222567788999998765444444333
No 343
>KOG2640|consensus
Probab=95.55 E-value=0.0037 Score=55.31 Aligned_cols=118 Identities=13% Similarity=0.173 Sum_probs=83.8
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC----ChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKIS----DTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTW 76 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~~ 76 (346)
+.||+.||+-.+...|+++-....+. .|....++ -+++..+|++.+.|++.+-...-+..|.|.++- ++++.|
T Consensus 81 ~~fy~s~C~fsr~~~~~fd~~~sl~~--~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~~~~~~~r~l-~sLv~f 157 (319)
T KOG2640|consen 81 LLFYASWCPFSRAVRPEFDVRSSLFS--SIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCPASYRGERDL-ASLVNF 157 (319)
T ss_pred ccchhcccCcccccCcccchhhhhcc--ccccccHHHHhhcccchhccccccCCcceeeccccchhhcccccH-HHHHHH
Confidence 36999999999999999988877764 24444454 357889999999999998888778889998877 489999
Q ss_pred HhccCCccccCceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhh
Q psy160 77 LTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGE 132 (346)
Q Consensus 77 i~~~~~p~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~ 132 (346)
..+-..- ....+. +.-.......+|.|||++..-..|...-+...
T Consensus 158 y~~i~~~---~v~ie~--------~d~~~~~~~~ry~~~~~~t~l~~p~~~~~~~~ 202 (319)
T KOG2640|consen 158 YTEITPM---SVLIEI--------LDCTSCLEPVRYVPEGGPTILLAPDGNLFTWA 202 (319)
T ss_pred HHhhccc---hhcccc--------cCcccceeeeEeccccCcccccCcCCCcchhc
Confidence 8765431 001111 11112467889999999877666665555444
No 344
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=95.54 E-value=0.041 Score=41.06 Aligned_cols=52 Identities=15% Similarity=0.082 Sum_probs=34.6
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-C---hh----hHHhhCCCCcceEEEEecC
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-D---PR----YARKWGVTKLPAVVYFRHR 166 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~---~~----l~~~~~i~~~Ptl~~~~~g 166 (346)
++.|..|||++|.+....|.+..- ....+.++ . .+ +.+.-|-..+|+|+ -+|
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~i-----~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf--i~g 69 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLGV-----NPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF--VGG 69 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCC-----CCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE--ECC
Confidence 689999999999998887766432 24555555 1 12 33334678999983 355
No 345
>KOG3171|consensus
Probab=95.52 E-value=0.083 Score=44.31 Aligned_cols=79 Identities=16% Similarity=0.340 Sum_probs=64.6
Q ss_pred cEEEc-cHHHHHHHHhc---cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--cChhhhhhCCCccccEEE
Q psy160 193 RIELI-TRVMLETMVEE---TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--QDPQLAKRYSIKTFPALV 266 (346)
Q Consensus 193 ~v~~l-~~~~~~~~~~~---~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~~~~~~~~~~i~~~Pti~ 266 (346)
.|..+ +.+.|-+.++. .-.++|..|-+.-.-|..+...+.=||..+. .++|.++ .+.....+|....+|+++
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP--~vKFckikss~~gas~~F~~n~lP~Ll 216 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP--IVKFCKIKSSNTGASDRFSLNVLPTLL 216 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC--ceeEEEeeeccccchhhhcccCCceEE
Confidence 45555 56778776653 3467788999998999999999999999987 6889988 667778899999999999
Q ss_pred EEeCCeE
Q psy160 267 YFRNGNP 273 (346)
Q Consensus 267 ~~~~g~~ 273 (346)
+|++|+.
T Consensus 217 iYkgGeL 223 (273)
T KOG3171|consen 217 IYKGGEL 223 (273)
T ss_pred EeeCCch
Confidence 9999974
No 346
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=95.45 E-value=0.05 Score=37.85 Aligned_cols=49 Identities=12% Similarity=0.255 Sum_probs=32.9
Q ss_pred EEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-ChhhHH---hhCCCCcceEEE
Q psy160 109 VFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYAR---KWGVTKLPAVVY 162 (346)
Q Consensus 109 v~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~l~~---~~~i~~~Ptl~~ 162 (346)
.+|..++|++|.+....|.+. +..+....++ ++.... +.|...+|++.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH-----GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence 578899999999988877653 2234444554 333443 348889999865
No 347
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.38 E-value=0.053 Score=37.84 Aligned_cols=50 Identities=14% Similarity=0.256 Sum_probs=33.1
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCC-hh----hHHhhCCC-CcceEEE
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD-PR----YARKWGVT-KLPAVVY 162 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~-~~----l~~~~~i~-~~Ptl~~ 162 (346)
+++|+.++|++|.+....|.+.. ..+....++. +. +.+..+.. .+|++++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~-----i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i 57 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKG-----VDYEEIDVDGDPALREEMINRSGGRRTVPQIFI 57 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCC-----CcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE
Confidence 57899999999999888887632 2344445542 23 33345766 8998753
No 348
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=95.36 E-value=0.013 Score=40.97 Aligned_cols=50 Identities=10% Similarity=0.227 Sum_probs=34.2
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-----ChhhHHhhCCCCcceEEE
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-----DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-----~~~l~~~~~i~~~Ptl~~ 162 (346)
+++|+.+||++|++....|++.. ..+....++ ...+.+..+-..+|++++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~g-----i~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREKG-----LPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHCC-----CceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 67899999999999888777632 224444444 223555667788898844
No 349
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.34 E-value=0.16 Score=36.24 Aligned_cols=76 Identities=20% Similarity=0.319 Sum_probs=51.4
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-ChhhHHhhCCCCcceEEEEecCC---cceecCCcchhHHHHH
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYARKWGVTKLPAVVYFRHRF---PSIYRGDLSEEEEVLQ 183 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~l~~~~~i~~~Ptl~~~~~g~---~~~y~g~~~~~~~i~~ 183 (346)
+++|..|.|+-|..+...+..+.... ...+..++++ ++.+..+|+. ..|.+.+=..+. .....+.++ .+.+.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~-~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d-~~~L~~ 78 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF-PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFD-EEQLRA 78 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS-TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB--HHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCC-HHHHHH
Confidence 68999999999999999998876543 2335566665 6789999996 699877643111 233445565 447888
Q ss_pred HHh
Q psy160 184 WLI 186 (346)
Q Consensus 184 fi~ 186 (346)
|++
T Consensus 79 ~L~ 81 (81)
T PF05768_consen 79 WLE 81 (81)
T ss_dssp HHH
T ss_pred HhC
Confidence 864
No 350
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=95.14 E-value=0.077 Score=38.55 Aligned_cols=55 Identities=27% Similarity=0.343 Sum_probs=40.5
Q ss_pred EEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-----c------------------------------ChhhhhhCC
Q psy160 214 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-----Q------------------------------DPQLAKRYS 258 (346)
Q Consensus 214 v~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-----~------------------------------~~~~~~~~~ 258 (346)
+.|+.+.|++|..+.+.+.++.....+ ++.+... . +...++.+|
T Consensus 2 ~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 2 VEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred eEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 578999999999999999998755443 5554443 1 123466788
Q ss_pred CccccEEEEEe
Q psy160 259 IKTFPALVYFR 269 (346)
Q Consensus 259 i~~~Pti~~~~ 269 (346)
+.+.|++++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999998865
No 351
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=95.10 E-value=0.028 Score=39.09 Aligned_cols=65 Identities=9% Similarity=0.138 Sum_probs=40.4
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCC----hhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHH
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD----PRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQ 183 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~----~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~ 183 (346)
+++|..+||++|.+....+.+.. .......++. ..+....|...+|.+. -+|+. -|.. ++|.+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~~-----i~~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~~---igg~---~~l~~ 69 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQENG-----ISYEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGEL---IGGS---DDLEK 69 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CCcEEEECCCChhHHHHHHHhCCCCcCeEE--ECCEE---EeCH---HHHHH
Confidence 68899999999999887776532 2233444442 2233345888999984 35542 2432 26777
Q ss_pred HH
Q psy160 184 WL 185 (346)
Q Consensus 184 fi 185 (346)
|+
T Consensus 70 ~l 71 (72)
T cd03029 70 YF 71 (72)
T ss_pred Hh
Confidence 65
No 352
>PRK13599 putative peroxiredoxin; Provisional
Probab=95.04 E-value=0.1 Score=44.96 Aligned_cols=38 Identities=3% Similarity=0.137 Sum_probs=28.4
Q ss_pred eEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 211 YLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 211 ~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.+|+.|++.||+.|....+.+.++..++...++.++.+
T Consensus 31 vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigI 68 (215)
T PRK13599 31 FVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGL 68 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 34677889999999998899998888875434444443
No 353
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=94.91 E-value=0.11 Score=44.33 Aligned_cols=38 Identities=11% Similarity=0.146 Sum_probs=29.3
Q ss_pred eEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 211 YLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 211 ~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.+++.|++.||+.|....+.+.++.+++++.++.++.+
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigv 65 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGL 65 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 44557889999999999999999998886545555544
No 354
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=94.86 E-value=0.11 Score=46.01 Aligned_cols=35 Identities=11% Similarity=0.049 Sum_probs=27.8
Q ss_pred CCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCc
Q psy160 104 NEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDI 138 (346)
Q Consensus 104 ~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i 138 (346)
++.+++.|| +.||+.|..-++.+.+.++++.+.++
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv 133 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGV 133 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC
Confidence 456677777 79999999999999999888854433
No 355
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=94.82 E-value=0.13 Score=37.37 Aligned_cols=56 Identities=27% Similarity=0.238 Sum_probs=39.8
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-----------------------------------ChhhHHhh
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-----------------------------------DPRYARKW 152 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-----------------------------------~~~l~~~~ 152 (346)
++.|+++.|++|..+.+.+.++...... ++.+.... ...++.++
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARAL 79 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHc
Confidence 4689999999999999999998633322 23333211 23456788
Q ss_pred CCCCcceEEEEe
Q psy160 153 GVTKLPAVVYFR 164 (346)
Q Consensus 153 ~i~~~Ptl~~~~ 164 (346)
|+.+.||+++..
T Consensus 80 g~~g~Pt~v~~~ 91 (98)
T cd02972 80 GVTGTPTFVVNG 91 (98)
T ss_pred CCCCCCEEEECC
Confidence 999999999864
No 356
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=94.81 E-value=0.018 Score=40.88 Aligned_cols=51 Identities=18% Similarity=0.325 Sum_probs=32.1
Q ss_pred eecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC-Ch----HHHHhcCCCCCCeEEEEeCCc
Q psy160 2 YINDENCPECDDILEELEHIDGDADQYGIDMVKIS-DT----EAAAKYNIINLPSLVYFRKQV 59 (346)
Q Consensus 2 ~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~----~~c~~~~i~~~Ptl~~f~~~~ 59 (346)
.|..+||++|.+....|++..- ......++ ++ ++....+....|++ |-+|.
T Consensus 3 ly~~~~Cp~C~~a~~~L~~~~i-----~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~ 58 (79)
T TIGR02181 3 IYTKPYCPYCTRAKALLSSKGV-----TFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDV 58 (79)
T ss_pred EEecCCChhHHHHHHHHHHcCC-----CcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCE
Confidence 5778999999999887775421 12333443 22 34445678889986 44554
No 357
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=94.76 E-value=0.6 Score=36.30 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=52.1
Q ss_pred HHHHHHHHhc--CCcEEEEEECCCChhHHHHHHHHHHHHhhccCC-CcEEEEeC-ChhhHHhhCCCCcc-eEEEEecCC
Q psy160 94 RRMLDKLLEE--NEFVTVFFYETDHKDSVKVLERLEKIDGETDNM-DITFVKMA-DPRYARKWGVTKLP-AVVYFRHRF 167 (346)
Q Consensus 94 ~~~~~~~~~~--~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~-~i~~~~~~-~~~l~~~~~i~~~P-tl~~~~~g~ 167 (346)
....++.+.+ ++.+++-|...|-+.|.++-..+.+++..+++. -|..+.++ -+++.+-|.+. -| |++||-+++
T Consensus 8 ~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnk 85 (133)
T PF02966_consen 8 GWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNK 85 (133)
T ss_dssp HHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTE
T ss_pred cchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCe
Confidence 4455665533 467889999999999999999999999998665 24444444 56788899999 56 577774555
No 358
>PRK10329 glutaredoxin-like protein; Provisional
Probab=94.75 E-value=0.15 Score=36.40 Aligned_cols=50 Identities=18% Similarity=0.323 Sum_probs=33.1
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-Chhh---HHhhCCCCcceEEE
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRY---ARKWGVTKLPAVVY 162 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~l---~~~~~i~~~Ptl~~ 162 (346)
+.+|..+||++|......|.+. +..+..+.++ .+.. .+..|...+|++++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~-----gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i 56 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR-----GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA 56 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE
Confidence 6789999999999888777542 3234444554 3332 23457788999965
No 359
>PRK13189 peroxiredoxin; Provisional
Probab=94.70 E-value=0.12 Score=44.66 Aligned_cols=38 Identities=11% Similarity=0.166 Sum_probs=27.8
Q ss_pred eEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 211 YLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 211 ~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.+|+.|++.||+.|....+.+.+++.+++..++.++.+
T Consensus 38 vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~Vigv 75 (222)
T PRK13189 38 FVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGL 75 (222)
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 44556779999999998889998888885434444433
No 360
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=94.67 E-value=0.021 Score=39.87 Aligned_cols=45 Identities=18% Similarity=0.305 Sum_probs=30.0
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEE--EcC-Ch----HHHHhcCCCCCCeE
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMV--KIS-DT----EAAAKYNIINLPSL 52 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~--~~~-~~----~~c~~~~i~~~Ptl 52 (346)
+.|+.|||++|++....|++ .||.+. .++ ++ ++....+-...|++
T Consensus 4 ~ly~~~~C~~C~ka~~~L~~-------~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v 55 (73)
T cd03027 4 TIYSRLGCEDCTAVRLFLRE-------KGLPYVEINIDIFPERKAELEERTGSSVVPQI 55 (73)
T ss_pred EEEecCCChhHHHHHHHHHH-------CCCceEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence 35788999999988776664 344443 333 22 45556677788976
No 361
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=94.66 E-value=0.16 Score=43.27 Aligned_cols=36 Identities=8% Similarity=0.011 Sum_probs=28.1
Q ss_pred cEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEE
Q psy160 106 FVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFV 141 (346)
Q Consensus 106 ~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~ 141 (346)
.+|+.|.+.||+.|...++.+.++++++++.++.++
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vi 63 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLI 63 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEE
Confidence 345567899999999999999999999855444444
No 362
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=94.63 E-value=0.038 Score=39.28 Aligned_cols=56 Identities=20% Similarity=0.312 Sum_probs=37.2
Q ss_pred eEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-cC---hhhhhhCCCccccEEEEEeCCeE
Q psy160 211 YLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QD---PQLAKRYSIKTFPALVYFRNGNP 273 (346)
Q Consensus 211 ~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~---~~~~~~~~i~~~Pti~~~~~g~~ 273 (346)
.-++.|..+||++|.+....|.+..-. .....+ .+ ..+.+..+..++|.+. .+|+.
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~gi~-----y~~idi~~~~~~~~~~~~~g~~~vP~i~--i~g~~ 67 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEKGYD-----FEEIPLGNDARGRSLRAVTGATTVPQVF--IGGKL 67 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHcCCC-----cEEEECCCChHHHHHHHHHCCCCcCeEE--ECCEE
Confidence 446778999999999998888765322 223333 12 3455556888999985 46654
No 363
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=94.62 E-value=0.034 Score=38.61 Aligned_cols=62 Identities=16% Similarity=0.400 Sum_probs=38.7
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeE--EEcCC----hHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDM--VKISD----TEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKIL 74 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~--~~~~~----~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~ 74 (346)
+.|..+||+.|.+....|.+. |+.+ ..++. ..+....|....|++ |.+|..+ |+ .++|.
T Consensus 4 ~lys~~~Cp~C~~ak~~L~~~-------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~i---gg---~~~l~ 68 (72)
T cd03029 4 SLFTKPGCPFCARAKAALQEN-------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELI---GG---SDDLE 68 (72)
T ss_pred EEEECCCCHHHHHHHHHHHHc-------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEE---eC---HHHHH
Confidence 368889999999987766643 4443 33332 223344688899986 5566542 32 25777
Q ss_pred HHH
Q psy160 75 TWL 77 (346)
Q Consensus 75 ~~i 77 (346)
+|+
T Consensus 69 ~~l 71 (72)
T cd03029 69 KYF 71 (72)
T ss_pred HHh
Confidence 775
No 364
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=94.62 E-value=0.18 Score=44.68 Aligned_cols=63 Identities=19% Similarity=0.311 Sum_probs=43.9
Q ss_pred ceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE-------------------------------cChhhhhhC
Q psy160 210 QYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI-------------------------------QDPQLAKRY 257 (346)
Q Consensus 210 ~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-------------------------------~~~~~~~~~ 257 (346)
+.+++.|| +.||+.|....+.+.++.+++++.++.++.+ .+..+++.|
T Consensus 99 k~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakay 178 (261)
T PTZ00137 99 SYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSF 178 (261)
T ss_pred CeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHc
Confidence 46677777 7999999998898888888875333333333 234567777
Q ss_pred CCc-----cccEEEEEe-CCe
Q psy160 258 SIK-----TFPALVYFR-NGN 272 (346)
Q Consensus 258 ~i~-----~~Pti~~~~-~g~ 272 (346)
|+. ..|+..++. +|+
T Consensus 179 Gv~~~~g~a~R~tFIID~dG~ 199 (261)
T PTZ00137 179 GLLRDEGFSHRASVLVDKAGV 199 (261)
T ss_pred CCCCcCCceecEEEEECCCCE
Confidence 774 478888885 665
No 365
>KOG3170|consensus
Probab=94.60 E-value=0.24 Score=41.26 Aligned_cols=79 Identities=18% Similarity=0.326 Sum_probs=59.6
Q ss_pred CcEEEccHHHHHH-HH-hccc-eEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEcChhhhhhCCCccccEEEEE
Q psy160 192 DRIELITRVMLET-MV-EETQ-YLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYF 268 (346)
Q Consensus 192 ~~v~~l~~~~~~~-~~-~~~~-~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~i~~~Pti~~~ 268 (346)
+.|..+++.++.. +. .+.. .|+|..|...-+.|..+...++.||.+|. .++|+++....-...|-=...||+++|
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp--~iKFVki~at~cIpNYPe~nlPTl~VY 168 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFP--QIKFVKIPATTCIPNYPESNLPTLLVY 168 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCC--cceEEecccccccCCCcccCCCeEEEe
Confidence 5777888888865 43 3444 45566888888999999999999999997 689999833333344555678999999
Q ss_pred eCCe
Q psy160 269 RNGN 272 (346)
Q Consensus 269 ~~g~ 272 (346)
..|.
T Consensus 169 ~~G~ 172 (240)
T KOG3170|consen 169 HHGA 172 (240)
T ss_pred ecch
Confidence 9884
No 366
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=94.58 E-value=0.19 Score=37.35 Aligned_cols=61 Identities=15% Similarity=0.266 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCcEEEEEEC-----CCChhHHHHHHHHHHHHhhccCCCcEEEEeC-Ch----hhHHhhCCCCcceEEE
Q psy160 95 RMLDKLLEENEFVTVFFYE-----TDHKDSVKVLERLEKIDGETDNMDITFVKMA-DP----RYARKWGVTKLPAVVY 162 (346)
Q Consensus 95 ~~~~~~~~~~~~~lv~F~~-----~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~----~l~~~~~i~~~Ptl~~ 162 (346)
+-.++++.+++ +|.|.. |||++|.+....|.+..- ....+.++ ++ .+.+.-|-..+|++.+
T Consensus 3 ~~v~~~i~~~~--Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i-----~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 3 ERIKEQIKENP--VVLYMKGTPQFPQCGFSARAVQILKACGV-----PFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred HHHHHHhccCC--EEEEEccCCCCCCCchHHHHHHHHHHcCC-----CEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 34556665654 344543 899999998887766432 23333443 22 3445567778898854
No 367
>PRK13189 peroxiredoxin; Provisional
Probab=94.57 E-value=0.2 Score=43.42 Aligned_cols=35 Identities=9% Similarity=-0.008 Sum_probs=26.5
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEE
Q psy160 107 VTVFFYETDHKDSVKVLERLEKIDGETDNMDITFV 141 (346)
Q Consensus 107 ~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~ 141 (346)
+|+.|.+.||+.|...++.+.++++++++.++.++
T Consensus 39 vL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~Vi 73 (222)
T PRK13189 39 VLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELI 73 (222)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEE
Confidence 34456689999999999999999988854444433
No 368
>KOG3170|consensus
Probab=94.54 E-value=0.61 Score=38.91 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=68.0
Q ss_pred ceeecCHHHHHH-HHhcC-CcE-EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEe
Q psy160 88 EIEEVNRRMLDK-LLEEN-EFV-TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 88 ~v~~l~~~~~~~-~~~~~-~~~-lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~ 164 (346)
.|..++-.++-+ ..+.+ ..| +|..|...-+.|.-+...+..+|..+.. +.|+++-.......|-=...|||++|.
T Consensus 92 ~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~--iKFVki~at~cIpNYPe~nlPTl~VY~ 169 (240)
T KOG3170|consen 92 EVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ--IKFVKIPATTCIPNYPESNLPTLLVYH 169 (240)
T ss_pred ceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc--ceEEecccccccCCCcccCCCeEEEee
Confidence 788888665544 44444 455 6667999999999999999999998854 788887655555566667889999999
Q ss_pred cCC-------cceecCCcchhHHHHHHHh
Q psy160 165 HRF-------PSIYRGDLSEEEEVLQWLI 186 (346)
Q Consensus 165 ~g~-------~~~y~g~~~~~~~i~~fi~ 186 (346)
.|. +..+.|...+.+++..++-
T Consensus 170 ~G~lk~q~igll~lgG~n~t~ed~e~~L~ 198 (240)
T KOG3170|consen 170 HGALKKQMIGLLELGGMNLTMEDVEDFLV 198 (240)
T ss_pred cchHHhheehhhhhcCCcCCHHHHHHHHH
Confidence 875 2235555555534444443
No 369
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=94.53 E-value=0.18 Score=37.14 Aligned_cols=82 Identities=13% Similarity=0.211 Sum_probs=57.6
Q ss_pred cHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-----cChhhhhhCCCc----ccc-EEEE
Q psy160 198 TRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-----QDPQLAKRYSIK----TFP-ALVY 267 (346)
Q Consensus 198 ~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-----~~~~~~~~~~i~----~~P-ti~~ 267 (346)
+..+|..++.....++|.|..+-- .-......+.++|+..+| .-.++.+ +...+|+++.+. .-| .+.-
T Consensus 8 d~KdfKKLLRTr~NVLvLy~ks~k-~a~~~Lk~~~~~A~~vkG-~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkH 85 (112)
T cd03067 8 DHKDFKKLLRTRNNVLVLYSKSAK-SAEALLKLLSDVAQAVKG-QGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKH 85 (112)
T ss_pred chHHHHHHHhhcCcEEEEEecchh-hHHHHHHHHHHHHHHhcC-ceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhc
Confidence 347888999998899999886542 223556789999999997 4444544 457799999997 444 3556
Q ss_pred EeCCeE-EEeecCcc
Q psy160 268 FRNGNP-LIFEGENK 281 (346)
Q Consensus 268 ~~~g~~-~~y~g~~~ 281 (346)
|++|.+ ..|+...+
T Consensus 86 YKdG~fHkdYdR~~t 100 (112)
T cd03067 86 YKDGDFHTEYNRQLT 100 (112)
T ss_pred ccCCCccccccchhh
Confidence 788874 34655443
No 370
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=94.38 E-value=0.075 Score=42.58 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=26.6
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHhhcc
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKIDGETD 134 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~ 134 (346)
.+..++.|+.++|++|.++.|.+.++.....
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence 4678999999999999999999998776653
No 371
>PRK13599 putative peroxiredoxin; Provisional
Probab=94.31 E-value=0.16 Score=43.79 Aligned_cols=35 Identities=3% Similarity=0.009 Sum_probs=27.8
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEE
Q psy160 107 VTVFFYETDHKDSVKVLERLEKIDGETDNMDITFV 141 (346)
Q Consensus 107 ~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~ 141 (346)
+|+.|.+.||+.|..-++.+.+++.++.+.++.++
T Consensus 32 VL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vi 66 (215)
T PRK13599 32 VLFSHPADFTPVCTTEFVEFARKANDFKELNTELI 66 (215)
T ss_pred EEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEE
Confidence 45677899999999999999999998855444444
No 372
>PRK10329 glutaredoxin-like protein; Provisional
Probab=94.26 E-value=0.12 Score=37.03 Aligned_cols=65 Identities=15% Similarity=0.365 Sum_probs=39.0
Q ss_pred eecCCCChhhHHHHHHHHHHHhhhcccCCeE--EEcC-ChH---HHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHH
Q psy160 2 YINDENCPECDDILEELEHIDGDADQYGIDM--VKIS-DTE---AAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILT 75 (346)
Q Consensus 2 ~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~--~~~~-~~~---~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~ 75 (346)
.|+.+||++|++....|++ .||.+ +.++ +++ .....+....|++++ ++.. ..| ... +.|.+
T Consensus 5 lYt~~~Cp~C~~ak~~L~~-------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~~--~~G-f~~-~~l~~ 71 (81)
T PRK10329 5 IYTRNDCVQCHATKRAMES-------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDLS--WSG-FRP-DMINR 71 (81)
T ss_pred EEeCCCCHhHHHHHHHHHH-------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCEE--Eec-CCH-HHHHH
Confidence 5778999999988776643 46665 4444 333 234567788898865 3332 223 222 46666
Q ss_pred HHhc
Q psy160 76 WLTS 79 (346)
Q Consensus 76 ~i~~ 79 (346)
.+..
T Consensus 72 ~~~~ 75 (81)
T PRK10329 72 LHPA 75 (81)
T ss_pred HHHh
Confidence 6543
No 373
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=94.24 E-value=0.027 Score=39.36 Aligned_cols=50 Identities=20% Similarity=0.406 Sum_probs=31.3
Q ss_pred eecCCCChhhHHHHHHHHHHHhhhcccCCeE--EEcCC-hH----HHHhcCCC-CCCeEEEEeCCce
Q psy160 2 YINDENCPECDDILEELEHIDGDADQYGIDM--VKISD-TE----AAAKYNII-NLPSLVYFRKQVP 60 (346)
Q Consensus 2 ~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~--~~~~~-~~----~c~~~~i~-~~Ptl~~f~~~~~ 60 (346)
.|..+||++|.+....|++. |+.+ +.++. ++ +-...+.. ..|++ |-+|..
T Consensus 4 ly~~~~Cp~C~~ak~~L~~~-------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~~ 61 (75)
T cd03418 4 IYTKPNCPYCVRAKALLDKK-------GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDVH 61 (75)
T ss_pred EEeCCCChHHHHHHHHHHHC-------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCEE
Confidence 57789999999988777643 4444 34432 22 33446766 88976 445543
No 374
>KOG2603|consensus
Probab=94.20 E-value=0.25 Score=44.03 Aligned_cols=82 Identities=21% Similarity=0.367 Sum_probs=63.9
Q ss_pred cccCcEEEccHHHHHHHHhc---cceEEEEEEcC----CChhhHHHHHHHHHHHhhcC-------cCceEEEEE---cCh
Q psy160 189 KTEDRIELITRVMLETMVEE---TQYLAVYFYKL----NCNICDQILEGLEKVDDECD-------IYGIHMVKI---QDP 251 (346)
Q Consensus 189 ~~~~~v~~l~~~~~~~~~~~---~~~~lv~F~~~----~c~~c~~~~~~~~~la~~~~-------~~~i~~~~i---~~~ 251 (346)
+.+..|..++.+++..++.. +-.++|+|.|. .|.-|+....++.-+|.... +.++-|..+ +.+
T Consensus 37 ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p 116 (331)
T KOG2603|consen 37 TSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP 116 (331)
T ss_pred cCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH
Confidence 45668889999999998763 33567777764 69999999999999988763 123556666 678
Q ss_pred hhhhhCCCccccEEEEEeC
Q psy160 252 QLAKRYSIKTFPALVYFRN 270 (346)
Q Consensus 252 ~~~~~~~i~~~Pti~~~~~ 270 (346)
+.-+.+++.+.|++++|..
T Consensus 117 ~~Fq~l~ln~~P~l~~f~P 135 (331)
T KOG2603|consen 117 QVFQQLNLNNVPHLVLFSP 135 (331)
T ss_pred HHHHHhcccCCCeEEEeCC
Confidence 8999999999999999954
No 375
>PRK10638 glutaredoxin 3; Provisional
Probab=94.13 E-value=0.18 Score=36.15 Aligned_cols=50 Identities=10% Similarity=0.174 Sum_probs=34.0
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-C----hhhHHhhCCCCcceEEE
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-D----PRYARKWGVTKLPAVVY 162 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~----~~l~~~~~i~~~Ptl~~ 162 (346)
+++|..+||++|.+....+++.. .......++ . ..+.+..|...+|++.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~g-----i~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKG-----VSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcC-----CCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 56888999999999888887643 234444554 2 23445567888998843
No 376
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=94.13 E-value=0.086 Score=43.87 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=19.9
Q ss_pred eecCCCChhhHHHHHHHHHHHhhhc
Q psy160 2 YINDENCPECDDILEELEHIDGDAD 26 (346)
Q Consensus 2 ~Fy~~~C~~c~~~~~~~~~~a~~~~ 26 (346)
+|+.|.|+.|=.++|.+.++...++
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~ 26 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYG 26 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcC
Confidence 5889999999999999999999873
No 377
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=94.12 E-value=0.24 Score=42.05 Aligned_cols=40 Identities=8% Similarity=0.228 Sum_probs=30.4
Q ss_pred cceEEEEEEc-CCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFYK-LNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~~-~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.+.++|.||+ .||+.|....+.+.++++++...++.++.+
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~I 76 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLAC 76 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 4577888885 789999887788888888887545655555
No 378
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=94.07 E-value=0.14 Score=35.53 Aligned_cols=49 Identities=20% Similarity=0.398 Sum_probs=31.9
Q ss_pred EEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-cChhhhh---hCCCccccEEEE
Q psy160 214 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQLAK---RYSIKTFPALVY 267 (346)
Q Consensus 214 v~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~~~~---~~~i~~~Pti~~ 267 (346)
..|..++|++|......+++..- .+....+ .++.... ..|..++|.+++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~~i-----~~~~~di~~~~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEHGI-----AFEEINIDEQPEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHCCC-----ceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence 45778999999998888876422 3334444 3443333 347788999744
No 379
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=93.94 E-value=0.23 Score=36.86 Aligned_cols=69 Identities=17% Similarity=0.370 Sum_probs=40.5
Q ss_pred HHHHHHHhccceEEEEEEc-----CCChhhHHHHHHHHHHHhhcCcCceEEEEE-cChh----hhhhCCCccccEEEEEe
Q psy160 200 VMLETMVEETQYLAVYFYK-----LNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQ----LAKRYSIKTFPALVYFR 269 (346)
Q Consensus 200 ~~~~~~~~~~~~~lv~F~~-----~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~----~~~~~~i~~~Pti~~~~ 269 (346)
+..++++++++.+ | |.. |||++|......|.++.-. .....+ .+++ +.+..|-..+|.+ |.
T Consensus 3 ~~v~~~i~~~~Vv-v-f~kg~~~~~~Cp~C~~ak~lL~~~~i~-----~~~~di~~~~~~~~~l~~~tg~~tvP~v--fi 73 (97)
T TIGR00365 3 ERIKEQIKENPVV-L-YMKGTPQFPQCGFSARAVQILKACGVP-----FAYVNVLEDPEIRQGIKEYSNWPTIPQL--YV 73 (97)
T ss_pred HHHHHHhccCCEE-E-EEccCCCCCCCchHHHHHHHHHHcCCC-----EEEEECCCCHHHHHHHHHHhCCCCCCEE--EE
Confidence 3445566665443 3 332 8999999999888886433 333344 3333 3344566678877 55
Q ss_pred CCeEEEeecCc
Q psy160 270 NGNPLIFEGEN 280 (346)
Q Consensus 270 ~g~~~~y~g~~ 280 (346)
+|+. -|+.
T Consensus 74 ~g~~---iGG~ 81 (97)
T TIGR00365 74 KGEF---VGGC 81 (97)
T ss_pred CCEE---EeCh
Confidence 6653 3554
No 380
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=93.91 E-value=0.098 Score=39.01 Aligned_cols=59 Identities=20% Similarity=0.354 Sum_probs=37.7
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEc-C---h----hhhhhCCCccccEEEEEeCCeEEEeecCcc
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ-D---P----QLAKRYSIKTFPALVYFRNGNPLIFEGENK 281 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~-~---~----~~~~~~~i~~~Pti~~~~~g~~~~y~g~~~ 281 (346)
++.|..+||++|.++...+.++.-. .....++ + . .+.+..|.+++|.+ |-+|+.+ |+.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~i~-----~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~i---GG~d 76 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLGVN-----PAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKLV---GGLE 76 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCC-----CEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEEE---cCHH
Confidence 5678999999999998888876433 3344441 2 1 23333466788987 5667543 5543
No 381
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=93.87 E-value=0.2 Score=42.49 Aligned_cols=39 Identities=10% Similarity=0.192 Sum_probs=29.9
Q ss_pred CCcEEEEEEC-CCChhHHHHHHHHHHHHhhccCCCcEEEE
Q psy160 104 NEFVTVFFYE-TDHKDSVKVLERLEKIDGETDNMDITFVK 142 (346)
Q Consensus 104 ~~~~lv~F~~-~~C~~c~~~~~~~~~~a~~~~~~~i~~~~ 142 (346)
++.+++.||+ .||+.|...++.+.++++++...++.++.
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~ 75 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLA 75 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 4667788885 78999998889999999998655555443
No 382
>PRK13191 putative peroxiredoxin; Provisional
Probab=93.85 E-value=0.32 Score=41.85 Aligned_cols=38 Identities=8% Similarity=0.134 Sum_probs=28.3
Q ss_pred eEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 211 YLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 211 ~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.+++.|++.||+.|....+.+.+++.+++..++.++.+
T Consensus 36 vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~Vigv 73 (215)
T PRK13191 36 FVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGL 73 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 34446779999999998899999988886444555444
No 383
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=0.14 Score=36.54 Aligned_cols=50 Identities=8% Similarity=0.185 Sum_probs=32.5
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC--C----hhhHHhh-CCCCcceEEE
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA--D----PRYARKW-GVTKLPAVVY 162 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~--~----~~l~~~~-~i~~~Ptl~~ 162 (346)
++.|..++|++|.+....|.+..- ....+.++ . .+..++. |.+.+|+|++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~g~-----~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRKGV-----DYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHcCC-----CcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 578999999999988877764322 22232332 2 1333444 7899999887
No 384
>KOG3171|consensus
Probab=93.15 E-value=0.44 Score=40.14 Aligned_cols=81 Identities=14% Similarity=0.256 Sum_probs=62.6
Q ss_pred cCceeecC-HHHHHHHHhcC---CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe--CChhhHHhhCCCCcce
Q psy160 86 KNEIEEVN-RRMLDKLLEEN---EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM--ADPRYARKWGVTKLPA 159 (346)
Q Consensus 86 ~~~v~~l~-~~~~~~~~~~~---~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~~~~l~~~~~i~~~Pt 159 (346)
-..|.+++ -+.|-..+... -..+|..|.+.-+-|..+...+.=+|..+.. +.|.++ .......+|..+..|+
T Consensus 137 ~~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~--vKFckikss~~gas~~F~~n~lP~ 214 (273)
T KOG3171|consen 137 YGFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI--VKFCKIKSSNTGASDRFSLNVLPT 214 (273)
T ss_pred cceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc--eeEEEeeeccccchhhhcccCCce
Confidence 34678886 46776666554 3568889999999999999999989888755 555554 4556678999999999
Q ss_pred EEEEecCCc
Q psy160 160 VVYFRHRFP 168 (346)
Q Consensus 160 l~~~~~g~~ 168 (346)
|.+|++|+.
T Consensus 215 LliYkgGeL 223 (273)
T KOG3171|consen 215 LLIYKGGEL 223 (273)
T ss_pred EEEeeCCch
Confidence 999999873
No 385
>KOG1752|consensus
Probab=93.05 E-value=0.74 Score=34.57 Aligned_cols=60 Identities=18% Similarity=0.301 Sum_probs=38.1
Q ss_pred HHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC--------ChhhHHhhCCCCcceEEE
Q psy160 96 MLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA--------DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 96 ~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~--------~~~l~~~~~i~~~Ptl~~ 162 (346)
...+.+.+++ +|.|..+||+.|..+...|... +....++.+| +..+.+--+-+.+|.+++
T Consensus 6 ~v~~~i~~~~--VVifSKs~C~~c~~~k~ll~~~-----~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 6 KVRKMISENP--VVIFSKSSCPYCHRAKELLSDL-----GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred HHHHHhhcCC--EEEEECCcCchHHHHHHHHHhC-----CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence 3455555544 5789999999999977777762 2235566555 222333334568898776
No 386
>PRK10824 glutaredoxin-4; Provisional
Probab=93.03 E-value=0.53 Score=36.06 Aligned_cols=61 Identities=11% Similarity=0.274 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCcEEEEEEC-----CCChhHHHHHHHHHHHHhhccCCCcEEEEeC-Chh----hHHhhCCCCcceEEE
Q psy160 95 RMLDKLLEENEFVTVFFYE-----TDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPR----YARKWGVTKLPAVVY 162 (346)
Q Consensus 95 ~~~~~~~~~~~~~lv~F~~-----~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~----l~~~~~i~~~Ptl~~ 162 (346)
+-.++++.+++ +|.|.. |||++|.+....|....-. ...+.++ .+. +.+.-|-..+|.|++
T Consensus 6 ~~v~~~I~~~~--Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~-----~~~idi~~d~~~~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 6 EKIQRQIAENP--ILLYMKGSPKLPSCGFSAQAVQALSACGER-----FAYVDILQNPDIRAELPKYANWPTFPQLWV 76 (115)
T ss_pred HHHHHHHhcCC--EEEEECCCCCCCCCchHHHHHHHHHHcCCC-----ceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence 44566666655 345555 6999999988888775422 3334443 222 333446677887765
No 387
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=93.01 E-value=0.33 Score=35.37 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=35.8
Q ss_pred HHHhcCCcEEEEEEC-----CCChhHHHHHHHHHHHHhhccCCCcEEEEeC-----ChhhHHhhCCCCcceEEEEecCC
Q psy160 99 KLLEENEFVTVFFYE-----TDHKDSVKVLERLEKIDGETDNMDITFVKMA-----DPRYARKWGVTKLPAVVYFRHRF 167 (346)
Q Consensus 99 ~~~~~~~~~lv~F~~-----~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-----~~~l~~~~~i~~~Ptl~~~~~g~ 167 (346)
+++.+++ +|.|.. |||++|.+....+.+..-. +..+.++ ...+.+..|-..+|++++ +|+
T Consensus 3 ~~i~~~~--vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~-----y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~ 72 (90)
T cd03028 3 KLIKENP--VVLFMKGTPEEPRCGFSRKVVQILNQLGVD-----FGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGE 72 (90)
T ss_pred hhhccCC--EEEEEcCCCCCCCCcHHHHHHHHHHHcCCC-----eEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCE
Confidence 3444443 344544 7999999988777665422 3333433 233455668889999843 553
No 388
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=92.42 E-value=0.28 Score=39.15 Aligned_cols=31 Identities=29% Similarity=0.511 Sum_probs=26.7
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcC
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECD 239 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~ 239 (346)
.++.++.|+.++|++|..+.+.+.++...+.
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence 4678899999999999999999999876653
No 389
>PRK10638 glutaredoxin 3; Provisional
Probab=92.27 E-value=0.095 Score=37.55 Aligned_cols=52 Identities=17% Similarity=0.311 Sum_probs=31.6
Q ss_pred eecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC-Ch----HHHHhcCCCCCCeEEEEeCCce
Q psy160 2 YINDENCPECDDILEELEHIDGDADQYGIDMVKIS-DT----EAAAKYNIINLPSLVYFRKQVP 60 (346)
Q Consensus 2 ~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~----~~c~~~~i~~~Ptl~~f~~~~~ 60 (346)
.|..+||++|++....|++.-- ....+.++ +. ++.+..+....|++ |.+|..
T Consensus 6 ly~~~~Cp~C~~a~~~L~~~gi-----~y~~~dv~~~~~~~~~l~~~~g~~~vP~i--~~~g~~ 62 (83)
T PRK10638 6 IYTKATCPFCHRAKALLNSKGV-----SFQEIPIDGDAAKREEMIKRSGRTTVPQI--FIDAQH 62 (83)
T ss_pred EEECCCChhHHHHHHHHHHcCC-----CcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEE
Confidence 4667999999998877764321 12334443 22 34455677888977 445543
No 390
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=91.64 E-value=0.31 Score=34.72 Aligned_cols=50 Identities=16% Similarity=0.398 Sum_probs=31.3
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--cC----hhhhhhC-CCccccEEEE
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--QD----PQLAKRY-SIKTFPALVY 267 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~~----~~~~~~~-~i~~~Pti~~ 267 (346)
++.|..++|++|.+....+.+..-.|. ...+ .. .+..++. |.+++|.|.+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~g~~~~-----~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRKGVDYE-----EIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHcCCCcE-----EEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 456788999999988888885543322 2222 11 1334444 6788998754
No 391
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=90.76 E-value=0.92 Score=32.28 Aligned_cols=54 Identities=31% Similarity=0.581 Sum_probs=41.2
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-cChhhhhhCCCccccEEEEE
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQLAKRYSIKTFPALVYF 268 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~~~~~~~i~~~Pti~~~ 268 (346)
++.|..+.|+-|..+...+.+++.... ..+..+.| +++++..+|+. ..|.+.+-
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~ 56 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP-FELEEVDIDEDPELFEKYGY-RIPVLHID 56 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST-CEEEEEETTTTHHHHHHSCT-STSEEEET
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHhcC-CCCEEEEc
Confidence 577889999999999999998876644 34666666 78889999996 58986543
No 392
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=90.69 E-value=0.47 Score=34.56 Aligned_cols=48 Identities=23% Similarity=0.442 Sum_probs=31.3
Q ss_pred CCChhhHHHHHHHHHHHhhcCcCceEEEEE-cCh----hhhhhCCCccccEEEEEeCCeE
Q psy160 219 LNCNICDQILEGLEKVDDECDIYGIHMVKI-QDP----QLAKRYSIKTFPALVYFRNGNP 273 (346)
Q Consensus 219 ~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~----~~~~~~~i~~~Pti~~~~~g~~ 273 (346)
|||++|......+.+..-. .....+ .++ .+.+.-|-+++|.+ |.+|+.
T Consensus 21 ~~Cp~C~~ak~~L~~~~i~-----y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~~ 73 (90)
T cd03028 21 PRCGFSRKVVQILNQLGVD-----FGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGEL 73 (90)
T ss_pred CCCcHHHHHHHHHHHcCCC-----eEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCEE
Confidence 7999999998888877533 333344 233 33444567788987 557764
No 393
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=89.35 E-value=0.68 Score=38.11 Aligned_cols=31 Identities=10% Similarity=0.000 Sum_probs=27.8
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhc
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGET 133 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~ 133 (346)
..++.++.|+.+.|++|..+.+.+..+.+++
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~ 44 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKL 44 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhC
Confidence 4577899999999999999999999888876
No 394
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=88.92 E-value=0.75 Score=37.84 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=32.5
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
+.++.++.|+...|++|..+.+.+..+.+++.+ ++.+..+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~~~ 53 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK-DVKFEKV 53 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC-CceEEEc
Confidence 456789999999999999999999999888754 5555443
No 395
>PRK13191 putative peroxiredoxin; Provisional
Probab=88.90 E-value=0.63 Score=40.06 Aligned_cols=40 Identities=5% Similarity=0.004 Sum_probs=30.1
Q ss_pred CCcEE-EEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe
Q psy160 104 NEFVT-VFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM 143 (346)
Q Consensus 104 ~~~~l-v~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 143 (346)
++.++ +.|.+.||+.|...++.+.+++.++++.++.++.+
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~Vigv 73 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGL 73 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 34333 46678999999999999999999996555555543
No 396
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=88.24 E-value=1.5 Score=41.76 Aligned_cols=50 Identities=10% Similarity=0.135 Sum_probs=32.5
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-Ch---hhHHh---------hCCCCcceEEE
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DP---RYARK---------WGVTKLPAVVY 162 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~---~l~~~---------~~i~~~Ptl~~ 162 (346)
++.|+.|||++|.+....+.+.. .....+.++ .+ .+.++ .|.+.+|++.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~g-----i~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAND-----IPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCC-----CCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 68899999999998877776632 223444554 22 11112 36788999965
No 397
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=88.15 E-value=1.4 Score=35.48 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=31.4
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhc--CcCceEEEEE
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDEC--DIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~--~~~~i~~~~i 248 (346)
.++.++.|+...|++|.++.+.+.++-+++ .+ .+.+...
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~ 52 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFR 52 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEE
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEE
Confidence 467899999999999999999999888887 44 6666655
No 398
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=87.87 E-value=1.2 Score=35.99 Aligned_cols=40 Identities=23% Similarity=0.261 Sum_probs=30.2
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHhhc-cCCCcEEEEe
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKIDGET-DNMDITFVKM 143 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~-~~~~i~~~~~ 143 (346)
.+..++.|+.+.|++|.++.+.+.++-+.+ ...++.+.-.
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~ 52 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFR 52 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEE
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEE
Confidence 367899999999999999999998888776 2334555543
No 399
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=87.63 E-value=1.1 Score=36.43 Aligned_cols=54 Identities=11% Similarity=0.114 Sum_probs=36.0
Q ss_pred CcEEEEEE-CCCChhHHHH-HHHHHHHHhhccCCCc-EEE--EeC----ChhhHHhhCC-CCcc
Q psy160 105 EFVTVFFY-ETDHKDSVKV-LERLEKIDGETDNMDI-TFV--KMA----DPRYARKWGV-TKLP 158 (346)
Q Consensus 105 ~~~lv~F~-~~~C~~c~~~-~~~~~~~a~~~~~~~i-~~~--~~~----~~~l~~~~~i-~~~P 158 (346)
+.+++.|| ..||+.|..- ++.|.+...++.+.++ .++ ..| ..+.++++++ ..+|
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~ 93 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIR 93 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEE
Confidence 44555555 5699999987 9999999999865444 233 344 4456667776 2444
No 400
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=87.12 E-value=1.2 Score=36.14 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=34.4
Q ss_pred ceEEEEEE-cCCChhhHHH-HHHHHHHHhhcCcCce-EEEEE------cChhhhhhCCC
Q psy160 210 QYLAVYFY-KLNCNICDQI-LEGLEKVDDECDIYGI-HMVKI------QDPQLAKRYSI 259 (346)
Q Consensus 210 ~~~lv~F~-~~~c~~c~~~-~~~~~~la~~~~~~~i-~~~~i------~~~~~~~~~~i 259 (346)
++++|.|| +.||+.|... .+.|.+...++...++ .++.+ ....+++++++
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 34555555 6799999987 8899999888865455 35555 33456666666
No 401
>PRK10824 glutaredoxin-4; Provisional
Probab=86.13 E-value=1.7 Score=33.37 Aligned_cols=69 Identities=22% Similarity=0.447 Sum_probs=38.8
Q ss_pred HHHHHHHhccceEEEEEEc-----CCChhhHHHHHHHHHHHhhcCcCceEEEEE-cChhhhhh----CCCccccEEEEEe
Q psy160 200 VMLETMVEETQYLAVYFYK-----LNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQLAKR----YSIKTFPALVYFR 269 (346)
Q Consensus 200 ~~~~~~~~~~~~~lv~F~~-----~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~~~~~----~~i~~~Pti~~~~ 269 (346)
+-.++++++++.+ .|.. |||++|......|..+.-.+ ....+ .++++... -|-+.+|. +|-
T Consensus 6 ~~v~~~I~~~~Vv--vf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~-----~~idi~~d~~~~~~l~~~sg~~TVPQ--IFI 76 (115)
T PRK10824 6 EKIQRQIAENPIL--LYMKGSPKLPSCGFSAQAVQALSACGERF-----AYVDILQNPDIRAELPKYANWPTFPQ--LWV 76 (115)
T ss_pred HHHHHHHhcCCEE--EEECCCCCCCCCchHHHHHHHHHHcCCCc-----eEEEecCCHHHHHHHHHHhCCCCCCe--EEE
Confidence 3345566665433 3444 69999999999888875333 23344 34333322 23344555 466
Q ss_pred CCeEEEeecCc
Q psy160 270 NGNPLIFEGEN 280 (346)
Q Consensus 270 ~g~~~~y~g~~ 280 (346)
+|+.+ |+.
T Consensus 77 ~G~~I---GG~ 84 (115)
T PRK10824 77 DGELV---GGC 84 (115)
T ss_pred CCEEE---cCh
Confidence 67644 654
No 402
>KOG1752|consensus
Probab=85.97 E-value=2.3 Score=31.98 Aligned_cols=53 Identities=15% Similarity=0.278 Sum_probs=32.0
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcCC----hH----HHHhcCCCCCCeEEEEeCCce
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKISD----TE----AAAKYNIINLPSLVYFRKQVP 60 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~----~~----~c~~~~i~~~Ptl~~f~~~~~ 60 (346)
|.|..+||+.|.++...|.+. ..+-.++..|. .+ +..--+-+..|.+. -+|+.
T Consensus 17 VifSKs~C~~c~~~k~ll~~~-----~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vF--I~Gk~ 77 (104)
T KOG1752|consen 17 VIFSKSSCPYCHRAKELLSDL-----GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVF--IGGKF 77 (104)
T ss_pred EEEECCcCchHHHHHHHHHhC-----CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEE--ECCEE
Confidence 578999999999977767662 22345566652 12 22233455778654 45443
No 403
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=83.78 E-value=1.7 Score=43.15 Aligned_cols=79 Identities=18% Similarity=0.309 Sum_probs=56.5
Q ss_pred EEccHHHHHHHHhccceEEEEEEcCCChhhHHHH-HHHH--HHHhhcCcCceEEEEE---cChhhhhhCC--------Cc
Q psy160 195 ELITRVMLETMVEETQYLAVYFYKLNCNICDQIL-EGLE--KVDDECDIYGIHMVKI---QDPQLAKRYS--------IK 260 (346)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~-~~~~--~la~~~~~~~i~~~~i---~~~~~~~~~~--------i~ 260 (346)
..-..+.|.+....++|+||-....||..|.-|. ..|+ ++|..++. ++.-++| +-|++-+.|. --
T Consensus 29 ~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~-~FV~IKVDREERPDvD~~Ym~~~q~~tG~G 107 (667)
T COG1331 29 YPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE-NFVPVKVDREERPDVDSLYMNASQAITGQG 107 (667)
T ss_pred cccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh-CceeeeEChhhccCHHHHHHHHHHHhccCC
Confidence 3457889999999999999999999999998764 3443 67777765 6666677 4455555443 34
Q ss_pred cccEEEE-EeCCeEE
Q psy160 261 TFPALVY-FRNGNPL 274 (346)
Q Consensus 261 ~~Pti~~-~~~g~~~ 274 (346)
|.|--++ -++|+|.
T Consensus 108 GWPLtVfLTPd~kPF 122 (667)
T COG1331 108 GWPLTVFLTPDGKPF 122 (667)
T ss_pred CCceeEEECCCCcee
Confidence 7895554 4677764
No 404
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=82.03 E-value=2.6 Score=40.15 Aligned_cols=47 Identities=23% Similarity=0.369 Sum_probs=29.6
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeE--EEcC-Ch---HHHHh---------cCCCCCCeEEE
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDM--VKIS-DT---EAAAK---------YNIINLPSLVY 54 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~--~~~~-~~---~~c~~---------~~i~~~Ptl~~ 54 (346)
+.|+.||||+|++...-|.+ .||.+ +.++ ++ ++..+ .|.+..|++.+
T Consensus 5 ~vys~~~Cp~C~~aK~~L~~-------~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 5 RIYTKTNCPFCDLAKSWFGA-------NDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 36889999999888765554 45554 3444 22 22222 46778898855
No 405
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=81.75 E-value=12 Score=27.50 Aligned_cols=70 Identities=21% Similarity=0.209 Sum_probs=44.0
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEecCC--cceecCCcchhHHHH
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRF--PSIYRGDLSEEEEVL 182 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~g~--~~~y~g~~~~~~~i~ 182 (346)
+..++.|..+. ..|.++..-++++|..-.+ |.+...+... ..|++.+..+|+ .++|.|-..-. ++.
T Consensus 20 pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdk--I~~~~~~~~~--------~~P~~~i~~~~~~~gIrF~GiP~Gh-Ef~ 87 (94)
T cd02974 20 PVELVASLDDS-EKSAELLELLEEIASLSDK--ITLEEDNDDE--------RKPSFSINRPGEDTGIRFAGIPMGH-EFT 87 (94)
T ss_pred CEEEEEEeCCC-cchHHHHHHHHHHHHhCCc--eEEEEecCCC--------CCCEEEEecCCCcccEEEEecCCch-hHH
Confidence 45577777655 7777777766666654322 4443322211 479999987764 47888876644 677
Q ss_pred HHHh
Q psy160 183 QWLI 186 (346)
Q Consensus 183 ~fi~ 186 (346)
.|+.
T Consensus 88 Slil 91 (94)
T cd02974 88 SLVL 91 (94)
T ss_pred HHHH
Confidence 7764
No 406
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=80.95 E-value=4.7 Score=32.68 Aligned_cols=55 Identities=16% Similarity=0.338 Sum_probs=38.7
Q ss_pred cCCcEEEEEEC-CCChhHHHHHHHHHHHHhhccCCCcEEEEe--C----ChhhHHhhCCCCcc
Q psy160 103 ENEFVTVFFYE-TDHKDSVKVLERLEKIDGETDNMDITFVKM--A----DPRYARKWGVTKLP 158 (346)
Q Consensus 103 ~~~~~lv~F~~-~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~----~~~l~~~~~i~~~P 158 (346)
.++.++++||. .+++-|-.-+-.|+....++++.+..++-+ | +.+++++++++ +|
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~-f~ 90 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT-FP 90 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC-ce
Confidence 34578888885 478888888888888888886666555543 3 55677777776 44
No 407
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=80.44 E-value=7.4 Score=28.59 Aligned_cols=65 Identities=22% Similarity=0.279 Sum_probs=40.8
Q ss_pred eecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcCChHHHHhcCCCCCCeEEEEeCCc--eeeecCCCCCHHHHHHHHh
Q psy160 2 YINDENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQV--PLLYDGDLFDEEKILTWLT 78 (346)
Q Consensus 2 ~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~~c~~~~i~~~Ptl~~f~~~~--~~~y~G~~~~~~~i~~~i~ 78 (346)
.|..+. ..|+.+..-++.+|+.-+. |.+...+... ..|++.+..++. -+.|.|-+..+ ++..|+.
T Consensus 25 ~f~~~~-~~~~e~~~ll~e~a~lSdk--I~~~~~~~~~--------~~P~~~i~~~~~~~gIrF~GiP~Gh-Ef~Slil 91 (94)
T cd02974 25 ASLDDS-EKSAELLELLEEIASLSDK--ITLEEDNDDE--------RKPSFSINRPGEDTGIRFAGIPMGH-EFTSLVL 91 (94)
T ss_pred EEeCCC-cchHHHHHHHHHHHHhCCc--eEEEEecCCC--------CCCEEEEecCCCcccEEEEecCCch-hHHHHHH
Confidence 355544 7788887777777776543 3332211111 469999987763 37899987775 7776654
No 408
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=79.93 E-value=2.8 Score=35.77 Aligned_cols=37 Identities=11% Similarity=0.109 Sum_probs=27.0
Q ss_pred CcEEEEEECCCChhHHHHHHHH---HHHHhhccCCCcEEEE
Q psy160 105 EFVTVFFYETDHKDSVKVLERL---EKIDGETDNMDITFVK 142 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~---~~~a~~~~~~~i~~~~ 142 (346)
++-+|.|+...|+||.++.+.+ ..+.+.+.. ++.++.
T Consensus 38 ~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~ 77 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTK 77 (207)
T ss_pred CCeEEEEeCCCCccHHHhcccccchHHHHHhCCC-CCeEEE
Confidence 5669999999999999999866 566666532 344544
No 409
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=79.64 E-value=8.3 Score=26.20 Aligned_cols=49 Identities=6% Similarity=0.032 Sum_probs=31.8
Q ss_pred EEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC----ChhhHHhhCCCCcceEEE
Q psy160 109 VFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 109 v~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----~~~l~~~~~i~~~Ptl~~ 162 (346)
++|+.+||+.|.+..-.+++..- .+....++ .+++.+.......|++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl-----~~e~~~v~~~~~~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI-----TVELREVELKNKPAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC-----CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE
Confidence 46788999999987766655433 34444444 344555556678898863
No 410
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=79.31 E-value=3.3 Score=28.90 Aligned_cols=66 Identities=20% Similarity=0.297 Sum_probs=35.3
Q ss_pred eecCCCChhhHHHHHHHHHHHhhhcccCCeE--EEcCC-----hHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHH
Q psy160 2 YINDENCPECDDILEELEHIDGDADQYGIDM--VKISD-----TEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKIL 74 (346)
Q Consensus 2 ~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~--~~~~~-----~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~ 74 (346)
.++.++|+.|.+..--+... |+.+ ..++. .++-....-.+.|+++.-.+|. ..++ ...|+
T Consensus 4 Ly~~~~sp~~~kv~~~L~~~-------gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~-~l~e-----s~~I~ 70 (77)
T cd03041 4 LYEFEGSPFCRLVREVLTEL-------ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGV-QMFE-----SADIV 70 (77)
T ss_pred EecCCCCchHHHHHHHHHHc-------CCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCe-EEEc-----HHHHH
Confidence 45668999998876544433 3333 33321 2232223345779875432332 3332 24788
Q ss_pred HHHhcc
Q psy160 75 TWLTSQ 80 (346)
Q Consensus 75 ~~i~~~ 80 (346)
+|+.+.
T Consensus 71 ~yL~~~ 76 (77)
T cd03041 71 KYLFKT 76 (77)
T ss_pred HHHHHh
Confidence 888753
No 411
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=79.20 E-value=4.7 Score=32.71 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=34.2
Q ss_pred cceEEEEEEc-CCChhhHHHHHHHHHHHhhcCcCceEEEEE------cChhhhhhCCC
Q psy160 209 TQYLAVYFYK-LNCNICDQILEGLEKVDDECDIYGIHMVKI------QDPQLAKRYSI 259 (346)
Q Consensus 209 ~~~~lv~F~~-~~c~~c~~~~~~~~~la~~~~~~~i~~~~i------~~~~~~~~~~i 259 (346)
.++++++||. .+++-|....-.|++.-.+++..+..+.-| ....+++++++
T Consensus 30 Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L 87 (157)
T COG1225 30 GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGL 87 (157)
T ss_pred CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCC
Confidence 3478888884 577778887788888877776556666555 23445555554
No 412
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=79.13 E-value=28 Score=27.12 Aligned_cols=95 Identities=20% Similarity=0.289 Sum_probs=49.7
Q ss_pred HHHHHHhhccccCcEEEc-cHHHHHHHHh-ccceEEEEEEcCCChhhH--HHHHHHHHHHhhcCcCceEEEEE---cChh
Q psy160 180 EVLQWLITQKTEDRIELI-TRVMLETMVE-ETQYLAVYFYKLNCNICD--QILEGLEKVDDECDIYGIHMVKI---QDPQ 252 (346)
Q Consensus 180 ~i~~fi~~~~~~~~v~~l-~~~~~~~~~~-~~~~~lv~F~~~~c~~c~--~~~~~~~~la~~~~~~~i~~~~i---~~~~ 252 (346)
+++.-+++.........+ |.++.++.++ .++..||.. .+-|| |- ..+|.....-.. ....=.++++ .+.+
T Consensus 4 ~lV~pmR~ELt~~Gf~eL~T~e~Vd~~~~~~~GTtlVvV-NSVCG-CAag~ARPa~~~al~~-~kkPD~lvTVFAGqDkE 80 (136)
T PF06491_consen 4 ELVQPMREELTRAGFEELTTAEEVDEALKNKEGTTLVVV-NSVCG-CAAGNARPAAAMALQN-DKKPDHLVTVFAGQDKE 80 (136)
T ss_dssp HHCHHHHHHHHTTT-EE--SHHHHHHHHHH--SEEEEEE-E-SSH-HHHHTHHHHHHHHHHH-SS--SEEEEEETTTSHH
T ss_pred HHHHHHHHHHHHcCccccCCHHHHHHHHhCCCCcEEEEE-ecccc-ccccccCHHHHHHHhC-CCCCCceEEeccCCCHH
Confidence 344445444444444444 7789999887 555555544 56787 53 456766654433 2112345555 2222
Q ss_pred ---hhhhCC---CccccEEEEEeCCeEEEee
Q psy160 253 ---LAKRYS---IKTFPALVYFRNGNPLIFE 277 (346)
Q Consensus 253 ---~~~~~~---i~~~Pti~~~~~g~~~~y~ 277 (346)
-++.|- ..+-|++.+||+|+.+.+-
T Consensus 81 At~~aR~yf~~~pPSSPS~ALfKdGelvh~i 111 (136)
T PF06491_consen 81 ATAKAREYFEPYPPSSPSIALFKDGELVHFI 111 (136)
T ss_dssp HHHHHHHTSTTS---SSEEEEEETTEEEEEE
T ss_pred HHHHHHHhcCCCCCCCchheeeeCCEEEEEe
Confidence 233332 2466999999999976653
No 413
>PHA03075 glutaredoxin-like protein; Provisional
Probab=78.35 E-value=2.6 Score=31.96 Aligned_cols=39 Identities=28% Similarity=0.623 Sum_probs=29.9
Q ss_pred ceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 210 QYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 210 ~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
+..+|.|..|.|+-|+.....+.++..+|.-..+.+...
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlSf 40 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYDILRVNILSF 40 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeeee
Confidence 457899999999999999999988888875323444433
No 414
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=77.08 E-value=3.3 Score=35.27 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=29.1
Q ss_pred ceEEEEEEcCCChhhHHHHHHH---HHHHhhcCcCceEEEEE
Q psy160 210 QYLAVYFYKLNCNICDQILEGL---EKVDDECDIYGIHMVKI 248 (346)
Q Consensus 210 ~~~lv~F~~~~c~~c~~~~~~~---~~la~~~~~~~i~~~~i 248 (346)
++-+|.|+.-.|++|..+.+.+ ..+.+.+.+ ++.+..+
T Consensus 38 ~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~~ 78 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTKY 78 (207)
T ss_pred CCeEEEEeCCCCccHHHhcccccchHHHHHhCCC-CCeEEEe
Confidence 4568999999999999998866 677777764 5555544
No 415
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=74.08 E-value=7.1 Score=28.19 Aligned_cols=71 Identities=21% Similarity=0.309 Sum_probs=50.1
Q ss_pred ecCCCChhhHHHHHHHHHHHhhh--cccCCeEEEc-CChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHH
Q psy160 3 INDENCPECDDILEELEHIDGDA--DQYGIDMVKI-SDTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKI 73 (346)
Q Consensus 3 Fy~~~C~~c~~~~~~~~~~a~~~--~~~~i~~~~~-~~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i 73 (346)
|.|..-+.+++....+.++-+.. +.+.+.++++ .+++++..+.|...||++=-.+.-.-..-|++++.+.+
T Consensus 9 yvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~P~rriiGdls~~~~v 82 (87)
T TIGR02654 9 YVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILPPPVRKIIGDLSDRERV 82 (87)
T ss_pred EEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCCCcceeeccccchHHH
Confidence 45666677777777777776654 3455677775 48999999999999997765444333456888876444
No 416
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=72.80 E-value=6.4 Score=30.95 Aligned_cols=74 Identities=11% Similarity=0.168 Sum_probs=47.1
Q ss_pred cEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-ChhhHHhhCCCC----cceEEEEecCCcceecCCcchhHH
Q psy160 106 FVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYARKWGVTK----LPAVVYFRHRFPSIYRGDLSEEEE 180 (346)
Q Consensus 106 ~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~l~~~~~i~~----~Ptl~~~~~g~~~~y~g~~~~~~~ 180 (346)
.-++.|++|.|+-|..+...++. ++..|.....+ ...+-+++||.. -=|.++ +| +..+|....+ +
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~-----~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~G--y~vEGHVPa~-a 95 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKA-----NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NG--YYVEGHVPAE-A 95 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHh-----CCcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cC--EEEeccCCHH-H
Confidence 35788999999999988777652 23345555555 455667888862 223332 23 3456777644 7
Q ss_pred HHHHHhhcc
Q psy160 181 VLQWLITQK 189 (346)
Q Consensus 181 i~~fi~~~~ 189 (346)
|..++.+..
T Consensus 96 I~~ll~~~p 104 (149)
T COG3019 96 IARLLAEKP 104 (149)
T ss_pred HHHHHhCCC
Confidence 888877654
No 417
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=71.91 E-value=5.1 Score=27.89 Aligned_cols=70 Identities=13% Similarity=0.223 Sum_probs=38.7
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-----ChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHH
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-----DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVL 182 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-----~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~ 182 (346)
+.+++.++|+.|.+..-.+.+..-. .....++ .+++.+.-+-..+|++..-.+| ...+ ....|+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~-----y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~-~~l~-----es~~I~ 70 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELD-----VILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTG-VQMF-----ESADIV 70 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCc-----EEEEECCCChHHHHHHHHhCCCCcccEEEeCCCC-eEEE-----cHHHHH
Confidence 3577889999999877666554332 3333333 1223333344678988542222 1122 233788
Q ss_pred HHHhhc
Q psy160 183 QWLITQ 188 (346)
Q Consensus 183 ~fi~~~ 188 (346)
+|+.+.
T Consensus 71 ~yL~~~ 76 (77)
T cd03041 71 KYLFKT 76 (77)
T ss_pred HHHHHh
Confidence 888753
No 418
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.18 E-value=2.7 Score=29.13 Aligned_cols=25 Identities=28% Similarity=0.600 Sum_probs=20.2
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhh
Q psy160 1 MYINDENCPECDDILEELEHIDGDA 25 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~ 25 (346)
++|+|..||.|..+...|+++--.+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~y 29 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDY 29 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCc
Confidence 4799999999999988888774443
No 419
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=70.96 E-value=7 Score=26.60 Aligned_cols=47 Identities=17% Similarity=0.149 Sum_probs=27.0
Q ss_pred eecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC----ChHHHHhcCCCCCCeEE
Q psy160 2 YINDENCPECDDILEELEHIDGDADQYGIDMVKIS----DTEAAAKYNIINLPSLV 53 (346)
Q Consensus 2 ~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----~~~~c~~~~i~~~Ptl~ 53 (346)
.|+.+||+.|++..-.++..--. +..+.++ ..++.........|++.
T Consensus 3 ly~~~~~p~~~rv~~~L~~~gl~-----~e~~~v~~~~~~~~~~~~np~~~vP~L~ 53 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLAGIT-----VELREVELKNKPAEMLAASPKGTVPVLV 53 (71)
T ss_pred EEecCCCcHHHHHHHHHHHcCCC-----cEEEEeCCCCCCHHHHHHCCCCCCCEEE
Confidence 56789999999886545433211 2223332 24554444555778874
No 420
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=70.71 E-value=7.3 Score=26.37 Aligned_cols=54 Identities=9% Similarity=0.119 Sum_probs=30.9
Q ss_pred EEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC--ChhhHHhhCCCCcceEEE
Q psy160 109 VFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA--DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 109 v~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~--~~~l~~~~~i~~~Ptl~~ 162 (346)
.+|+.++|+.|.+..-.+....-.+....+.+..-+ .+++.+.......|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 468889999999888777665433221111111111 234444455567898865
No 421
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=70.46 E-value=3.2 Score=33.31 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=30.0
Q ss_pred EEEEECC------CChhHHHHHHHHHHHHhhccCCCcEEEEeC-Ch----hhHHhhCC----CCcceEEE
Q psy160 108 TVFFYET------DHKDSVKVLERLEKIDGETDNMDITFVKMA-DP----RYARKWGV----TKLPAVVY 162 (346)
Q Consensus 108 lv~F~~~------~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~----~l~~~~~i----~~~Ptl~~ 162 (346)
+++|+++ +|++|.+....|+...-. +.-.+++ ++ .|.+..+- ..+|.|++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~-----~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVK-----FDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCc-----EEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 4667777 899999888777664322 2333343 22 34444454 56787765
No 422
>PRK09301 circadian clock protein KaiB; Provisional
Probab=69.85 E-value=10 Score=28.30 Aligned_cols=75 Identities=24% Similarity=0.314 Sum_probs=52.8
Q ss_pred ecCCCChhhHHHHHHHHHHHhhh--cccCCeEEEc-CChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHHHH
Q psy160 3 INDENCPECDDILEELEHIDGDA--DQYGIDMVKI-SDTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTWL 77 (346)
Q Consensus 3 Fy~~~C~~c~~~~~~~~~~a~~~--~~~~i~~~~~-~~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~~i 77 (346)
|.|..-+.+++....+.++-+.. +.+.+.++++ .+++++..+.|...||++=-.+.-.-..-|++++.+.++.-+
T Consensus 12 yVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~P~rriiGDlsd~~kVL~~L 89 (103)
T PRK09301 12 YVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILPPPVRKIIGDLSDREKVLIGL 89 (103)
T ss_pred EEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCCCCcceeecccccHHHHHHhc
Confidence 45666677777777777776654 4455677776 489999999999999977654443334579998876655443
No 423
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=69.81 E-value=6.3 Score=25.89 Aligned_cols=48 Identities=17% Similarity=0.060 Sum_probs=26.8
Q ss_pred eecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcCC----h-HHHHhcCCCCCCeEEE
Q psy160 2 YINDENCPECDDILEELEHIDGDADQYGIDMVKISD----T-EAAAKYNIINLPSLVY 54 (346)
Q Consensus 2 ~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~----~-~~c~~~~i~~~Ptl~~ 54 (346)
.|+.++|+.|++..-.++...-. +....++. . ++-....-...|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~-----~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLP-----YELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC-----cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 46779999999877655544222 22222321 1 2344455667787654
No 424
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=68.85 E-value=9.4 Score=26.56 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=18.5
Q ss_pred EEEEcCCChhhHHHHHHHHHHHhhc
Q psy160 214 VYFYKLNCNICDQILEGLEKVDDEC 238 (346)
Q Consensus 214 v~F~~~~c~~c~~~~~~~~~la~~~ 238 (346)
++|++..|+.|..+...++++.-.|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~y 29 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDY 29 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCc
Confidence 5799999999977766666664333
No 425
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=68.39 E-value=5.6 Score=26.16 Aligned_cols=49 Identities=16% Similarity=0.155 Sum_probs=30.2
Q ss_pred EEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCC-----hhhHHhhCCCCcceEEE
Q psy160 109 VFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD-----PRYARKWGVTKLPAVVY 162 (346)
Q Consensus 109 v~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~-----~~l~~~~~i~~~Ptl~~ 162 (346)
.+|+.++|+.|.+..-.+....-. +....++. ..+-...+-..+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~-----~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLP-----YELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC-----cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 367889999999877766655332 33334331 12444556668898764
No 426
>PHA03075 glutaredoxin-like protein; Provisional
Probab=68.12 E-value=8 Score=29.37 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=24.6
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhc
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGET 133 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~ 133 (346)
+..+++|..|.|+-|......+.++..++
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 45799999999999998888887777665
No 427
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=67.34 E-value=7.8 Score=26.90 Aligned_cols=52 Identities=19% Similarity=0.406 Sum_probs=38.2
Q ss_pred ecCCCChhhHHHHHHHHHHHhhh--cccCCeEEEc-CChHHHHhcCCCCCCeEEE
Q psy160 3 INDENCPECDDILEELEHIDGDA--DQYGIDMVKI-SDTEAAAKYNIINLPSLVY 54 (346)
Q Consensus 3 Fy~~~C~~c~~~~~~~~~~a~~~--~~~~i~~~~~-~~~~~c~~~~i~~~Ptl~~ 54 (346)
|-+..-+.+++....+.++-++. ..+.+.++++ .+++++..++|...||++=
T Consensus 7 yv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk 61 (72)
T cd02978 7 YVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVK 61 (72)
T ss_pred EECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhh
Confidence 44555566777777777777765 3445667775 4899999999999999764
No 428
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=66.96 E-value=18 Score=25.06 Aligned_cols=56 Identities=18% Similarity=0.273 Sum_probs=41.3
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHhhccCC--CcEEEEeC-ChhhHHhhCCCCcceEEE
Q psy160 107 VTVFFYETDHKDSVKVLERLEKIDGETDNM--DITFVKMA-DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 107 ~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~--~i~~~~~~-~~~l~~~~~i~~~Ptl~~ 162 (346)
.+.+|-+...+.+.+....+.++-+...+. .+.++++. ++.++..++|-..||++=
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk 61 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVK 61 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhh
Confidence 466777777777887777777776665332 35555554 899999999999999863
No 429
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=65.58 E-value=12 Score=30.93 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=25.6
Q ss_pred EEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 215 YFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 215 ~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
+|..|.|+.|-.+.|.+.++...+.+ .+.+-.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~-~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN-KIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T-TEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC-cEEEEEE
Confidence 58899999999999999999999986 5665555
No 430
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=64.85 E-value=7.1 Score=29.12 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=17.2
Q ss_pred EEEECCCChhHHHHHHHHHHH
Q psy160 109 VFFYETDHKDSVKVLERLEKI 129 (346)
Q Consensus 109 v~F~~~~C~~c~~~~~~~~~~ 129 (346)
..|+.|+|+.|++....+++.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~ 22 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH 22 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc
Confidence 578999999999887766653
No 431
>KOG2792|consensus
Probab=64.24 E-value=31 Score=30.30 Aligned_cols=40 Identities=18% Similarity=0.349 Sum_probs=26.1
Q ss_pred CcEEEEEECCCChh-HHHHHHHHHHHHhhccC-CCc----EEEEeC
Q psy160 105 EFVTVFFYETDHKD-SVKVLERLEKIDGETDN-MDI----TFVKMA 144 (346)
Q Consensus 105 ~~~lv~F~~~~C~~-c~~~~~~~~~~a~~~~~-~~i----~~~~~~ 144 (346)
+-.|++|.-++|+. |..-+..+.++-+.++. .++ .|+.+|
T Consensus 140 kw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvD 185 (280)
T KOG2792|consen 140 KWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVD 185 (280)
T ss_pred ceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeC
Confidence 45588888889986 87766666666666522 222 466665
No 432
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=64.11 E-value=11 Score=31.52 Aligned_cols=44 Identities=16% Similarity=0.272 Sum_probs=30.2
Q ss_pred ChhhHHhhCCCCcceEEEEecCCccee-cC-CcchhHHHHHHHhhc
Q psy160 145 DPRYARKWGVTKLPAVVYFRHRFPSIY-RG-DLSEEEEVLQWLITQ 188 (346)
Q Consensus 145 ~~~l~~~~~i~~~Ptl~~~~~g~~~~y-~g-~~~~~~~i~~fi~~~ 188 (346)
...+++++|+.+|||+.+-++|+.... .| .....++++.++.+.
T Consensus 163 ~r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~ 208 (212)
T COG3531 163 SRRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQR 208 (212)
T ss_pred HHHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHH
Confidence 367899999999999999999985432 22 122223677776553
No 433
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=63.31 E-value=4.6 Score=32.45 Aligned_cols=21 Identities=14% Similarity=0.414 Sum_probs=15.4
Q ss_pred CeecCC------CChhhHHHHHHHHHH
Q psy160 1 MYINDE------NCPECDDILEELEHI 21 (346)
Q Consensus 1 v~Fy~~------~C~~c~~~~~~~~~~ 21 (346)
|.|+++ +|++|++....|+..
T Consensus 3 vlYttsl~giR~t~~~C~~ak~iL~~~ 29 (147)
T cd03031 3 VLYTTSLRGVRKTFEDCNNVRAILESF 29 (147)
T ss_pred EEEEcCCcCCCCcChhHHHHHHHHHHC
Confidence 356677 899998887766644
No 434
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=62.94 E-value=1.3e+02 Score=28.02 Aligned_cols=129 Identities=15% Similarity=0.195 Sum_probs=77.2
Q ss_pred CCCCeEEEEeCCc--eeeecCCCCCHH---HHHHHHhccCCccccCceeecCHHHHHHHHh-cCCcEEEEEECCCChhHH
Q psy160 47 INLPSLVYFRKQV--PLLYDGDLFDEE---KILTWLTSQDVFEIKNEIEEVNRRMLDKLLE-ENEFVTVFFYETDHKDSV 120 (346)
Q Consensus 47 ~~~Ptl~~f~~~~--~~~y~G~~~~~~---~i~~~i~~~~~p~~~~~v~~l~~~~~~~~~~-~~~~~lv~F~~~~C~~c~ 120 (346)
..-|++.+-+.|+ -+.|-|-+..++ -++..++-...| ..++.+-.+++-. ++...+=-|++-.|..|.
T Consensus 59 ~RkpSF~i~r~g~~~gv~FAglPlGHEftSlVLaLlqv~G~p------pk~~q~vieqik~i~g~~~FETy~SltC~nCP 132 (520)
T COG3634 59 VRKPSFSINRPGEDQGVRFAGLPLGHEFTSLVLALLQVGGHP------PKEDQDVIEQIKAIDGDFHFETYFSLTCHNCP 132 (520)
T ss_pred ccCCceeecCCCcccceEEecCcccchHHHHHHHHHHhcCCC------CchhHHHHHHHHhcCCceeEEEEEEeeccCCh
Confidence 3458888877763 456777655541 233444444343 2234444555432 235556677888899999
Q ss_pred HHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHHHHhh
Q psy160 121 KVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 121 ~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~~ 187 (346)
.....+..++-- +.+|.-..+| ..+-.+.-+|-+.||+.+ ||+.+- +|..+-+ +|+.-+..
T Consensus 133 DVVQALN~msvl--Np~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe~fg-~GRmtle-eilaki~~ 196 (520)
T COG3634 133 DVVQALNLMSVL--NPRIKHTAIDGALFQDEVEARNIMAVPTVFL--NGEEFG-QGRMTLE-EILAKIDT 196 (520)
T ss_pred HHHHHHHHHHhc--CCCceeEEecchhhHhHHHhccceecceEEE--cchhhc-ccceeHH-HHHHHhcC
Confidence 888877776643 3347777777 444455668999999876 444221 4555533 66666654
No 435
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=62.18 E-value=19 Score=27.41 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhcCcCceEEEEE-cChhhhhhCCCccccEEEEEeC
Q psy160 226 QILEGLEKVDDECDIYGIHMVKI-QDPQLAKRYSIKTFPALVYFRN 270 (346)
Q Consensus 226 ~~~~~~~~la~~~~~~~i~~~~i-~~~~~~~~~~i~~~Pti~~~~~ 270 (346)
.+.+++..+.+.....+-. ..+ -+|.+-++|+|+..|++++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~-~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC-PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC-cceeEChhHHhhCCceEcCEEEEEcC
Confidence 4455555555444321111 222 4999999999999999999988
No 436
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=61.61 E-value=38 Score=24.49 Aligned_cols=76 Identities=20% Similarity=0.308 Sum_probs=52.7
Q ss_pred cEEEEEECCCChhHHHHHHHHHHHHhhc-cC-CCcEEEEeC-ChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHH
Q psy160 106 FVTVFFYETDHKDSVKVLERLEKIDGET-DN-MDITFVKMA-DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEV 181 (346)
Q Consensus 106 ~~lv~F~~~~C~~c~~~~~~~~~~a~~~-~~-~~i~~~~~~-~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i 181 (346)
..+=+|.+..-+.+.+....+.++-+.. .+ ..+.++++. ++.+++.++|-..||++=-..+-.-+.-|++++.+.+
T Consensus 4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~P~rriiGdls~~~~v 82 (87)
T TIGR02654 4 YVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILPPPVRKIIGDLSDRERV 82 (87)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCCCcceeeccccchHHH
Confidence 3466777877788888777777776554 22 235555554 8999999999999998755444444577888765443
No 437
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=61.56 E-value=9 Score=28.75 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=16.9
Q ss_pred EEEECCCChhHHHHHHHHHHH
Q psy160 109 VFFYETDHKDSVKVLERLEKI 129 (346)
Q Consensus 109 v~F~~~~C~~c~~~~~~~~~~ 129 (346)
..|+.|+|+.|++....+++.
T Consensus 2 ~iy~~~~C~~crka~~~L~~~ 22 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR 22 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc
Confidence 578999999999877666553
No 438
>PRK09301 circadian clock protein KaiB; Provisional
Probab=61.26 E-value=40 Score=25.17 Aligned_cols=80 Identities=19% Similarity=0.289 Sum_probs=56.0
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhc-cC-CCcEEEEeC-ChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHH
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGET-DN-MDITFVKMA-DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEV 181 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~-~~-~~i~~~~~~-~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i 181 (346)
...|=+|.+..-+.+.+....+.++-+.. .+ ..+.++++. ++.++..++|-..||++=-...-.-+.-|++++.+.+
T Consensus 6 ~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~P~rriiGDlsd~~kV 85 (103)
T PRK09301 6 TYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILPPPVRKIIGDLSDREKV 85 (103)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCCCCcceeecccccHHHH
Confidence 34577788888888888887877776554 22 235555554 8999999999999998755444444577888866555
Q ss_pred HHH
Q psy160 182 LQW 184 (346)
Q Consensus 182 ~~f 184 (346)
+.-
T Consensus 86 L~~ 88 (103)
T PRK09301 86 LIG 88 (103)
T ss_pred HHh
Confidence 443
No 439
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=60.85 E-value=6 Score=29.99 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=16.6
Q ss_pred EEEECCCChhHHHHHHHHHH
Q psy160 109 VFFYETDHKDSVKVLERLEK 128 (346)
Q Consensus 109 v~F~~~~C~~c~~~~~~~~~ 128 (346)
..|+.|+|+.|++....+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE 21 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 57889999999988876665
No 440
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=60.71 E-value=30 Score=29.48 Aligned_cols=61 Identities=20% Similarity=0.264 Sum_probs=41.2
Q ss_pred cCCcEEEEEECCCChh-HHHHHHHHHHHHhhcc-C--CC--cEEEEeC----ChhhHHhhCC-CCcceEEEE
Q psy160 103 ENEFVTVFFYETDHKD-SVKVLERLEKIDGETD-N--MD--ITFVKMA----DPRYARKWGV-TKLPAVVYF 163 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~-c~~~~~~~~~~a~~~~-~--~~--i~~~~~~----~~~l~~~~~i-~~~Ptl~~~ 163 (346)
.+++++|.|.=..|+. |.-....+.++.+++. . .+ +.++.+| .++..++|.. ...|.+...
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~l 137 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGL 137 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeee
Confidence 5688999998778885 9888888888888774 2 22 4555665 5566667766 444444433
No 441
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=59.22 E-value=27 Score=35.05 Aligned_cols=79 Identities=13% Similarity=0.083 Sum_probs=54.0
Q ss_pred eecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHH-H--HHHHhhccCCCcEEEEeC---ChhhHHhh-------C-CC
Q psy160 90 EEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLER-L--EKIDGETDNMDITFVKMA---DPRYARKW-------G-VT 155 (346)
Q Consensus 90 ~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~-~--~~~a~~~~~~~i~~~~~~---~~~l~~~~-------~-i~ 155 (346)
..-.++-|++.-..++++++-...+||.-|.-|..+ | .++|..++.. +.-++|| .+++-+.| . --
T Consensus 29 ~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~-FV~IKVDREERPDvD~~Ym~~~q~~tG~G 107 (667)
T COG1331 29 YPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNEN-FVPVKVDREERPDVDSLYMNASQAITGQG 107 (667)
T ss_pred cccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhC-ceeeeEChhhccCHHHHHHHHHHHhccCC
Confidence 356789999999999999999999999999988764 2 4566655443 5666666 34444333 3 34
Q ss_pred CcceEEEE-ecCCcc
Q psy160 156 KLPAVVYF-RHRFPS 169 (346)
Q Consensus 156 ~~Ptl~~~-~~g~~~ 169 (346)
+.|--+|. ++|+|+
T Consensus 108 GWPLtVfLTPd~kPF 122 (667)
T COG1331 108 GWPLTVFLTPDGKPF 122 (667)
T ss_pred CCceeEEECCCCcee
Confidence 77855544 456653
No 442
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=58.82 E-value=19 Score=24.19 Aligned_cols=53 Identities=9% Similarity=0.105 Sum_probs=29.9
Q ss_pred EEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--cChhhhhhCCCccccEEEE
Q psy160 215 YFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--QDPQLAKRYSIKTFPALVY 267 (346)
Q Consensus 215 ~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~~~~~~~~~~i~~~Pti~~ 267 (346)
.|+.++|+.|.+.+-.+....-.+....+.+..- ..+++.+......+|++..
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 5677899999988877777654443111111110 1233444444557888864
No 443
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=58.57 E-value=13 Score=25.17 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=31.0
Q ss_pred EEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-------ChhhHHhhCCCCcceEEE
Q psy160 109 VFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-------DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 109 v~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-------~~~l~~~~~i~~~Ptl~~ 162 (346)
.+|+.++|+.|.+..-.++...-. +....++ .+++.+.......|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~-----~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE-----LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD 57 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC-----CEEEEecCccCCcCCHHHHhhCcCCCCCEEEE
Confidence 478899999998777666654333 3333332 245555555667899963
No 444
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=56.92 E-value=38 Score=22.68 Aligned_cols=66 Identities=15% Similarity=0.176 Sum_probs=38.2
Q ss_pred EEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC----ChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHHH
Q psy160 109 VFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQW 184 (346)
Q Consensus 109 v~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~f 184 (346)
.+|+.++|+.|.+..-.++...-. .....++ .+.+.+.......|++.. +|. . ......|.+|
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~-----~~~~~v~~~~~~~~~~~~~p~~~vP~l~~--~~~-~-----l~es~aI~~y 68 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS-----VEIIDVDPDNPPEDLAELNPYGTVPTLVD--RDL-V-----LYESRIIMEY 68 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc-----cEEEEcCCCCCCHHHHhhCCCCCCCEEEE--CCE-E-----EEcHHHHHHH
Confidence 578889999999887666554333 3333333 234444445567897742 331 1 2223378888
Q ss_pred Hhh
Q psy160 185 LIT 187 (346)
Q Consensus 185 i~~ 187 (346)
+.+
T Consensus 69 L~~ 71 (73)
T cd03059 69 LDE 71 (73)
T ss_pred HHh
Confidence 765
No 445
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=56.42 E-value=25 Score=29.02 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=24.3
Q ss_pred cCCcEEEEEECCCCh-hHHHHHHHHHHHHhhc
Q psy160 103 ENEFVTVFFYETDHK-DSVKVLERLEKIDGET 133 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~-~c~~~~~~~~~~a~~~ 133 (346)
.+++++|.|.-..|+ .|...+..+.++.+.+
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l 82 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQL 82 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHh
Confidence 467888888878886 5998888888888776
No 446
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=55.92 E-value=9.6 Score=28.39 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=17.9
Q ss_pred EEEEcCCChhhHHHHHHHHHHH
Q psy160 214 VYFYKLNCNICDQILEGLEKVD 235 (346)
Q Consensus 214 v~F~~~~c~~c~~~~~~~~~la 235 (346)
..|+.++|+.|++....+++..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~ 23 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEHG 23 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHcC
Confidence 4678999999998887777754
No 447
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=55.36 E-value=64 Score=21.98 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=42.9
Q ss_pred EEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC----ChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHHHH
Q psy160 110 FFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 110 ~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi 185 (346)
+++.++|+.|.+..-.++...- .+.+..++ ...+.+...-..+|++. .+|.. +.....|++|+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i-----~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~------l~dS~~I~~yL 67 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI-----PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEV------LTDSAAIIEYL 67 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE-----EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEE------EESHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCC-----eEEEeccCcccchhHHHhhcccccceEEE--ECCEE------EeCHHHHHHHH
Confidence 4678999999987766655432 24444443 34566666677889997 34442 11233799998
Q ss_pred hhccc
Q psy160 186 ITQKT 190 (346)
Q Consensus 186 ~~~~~ 190 (346)
.+...
T Consensus 68 ~~~~~ 72 (75)
T PF13417_consen 68 EERYP 72 (75)
T ss_dssp HHHST
T ss_pred HHHcC
Confidence 87643
No 448
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=55.21 E-value=58 Score=22.19 Aligned_cols=70 Identities=11% Similarity=0.007 Sum_probs=39.3
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCC---hhhHHhhCCCCcceEEEEecCC-cceecCCcchhHHHHH
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD---PRYARKWGVTKLPAVVYFRHRF-PSIYRGDLSEEEEVLQ 183 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~---~~l~~~~~i~~~Ptl~~~~~g~-~~~y~g~~~~~~~i~~ 183 (346)
+.+|+.+.|+.|++..-.+.+..- ......++. ..+ ..-+-...|++..=..|. ...+ ....|++
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi-----~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~-----eS~~I~~ 70 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGI-----PYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQLV-----DSSVIIS 70 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCC-----ceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEEE-----cHHHHHH
Confidence 457888999999988866655432 233334431 122 234456789887532111 1222 2336888
Q ss_pred HHhhc
Q psy160 184 WLITQ 188 (346)
Q Consensus 184 fi~~~ 188 (346)
|+.+.
T Consensus 71 yL~~~ 75 (77)
T cd03040 71 TLKTY 75 (77)
T ss_pred HHHHH
Confidence 88764
No 449
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=55.04 E-value=16 Score=28.65 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=16.8
Q ss_pred EEEEECCCChhHHHHHHHHHH
Q psy160 108 TVFFYETDHKDSVKVLERLEK 128 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~ 128 (346)
+..|+.|+|+.|++....+.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~ 22 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE 22 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 467889999999987766654
No 450
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=54.11 E-value=18 Score=31.45 Aligned_cols=56 Identities=7% Similarity=0.131 Sum_probs=42.4
Q ss_pred CcEEEccHHH---HHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 192 DRIELITRVM---LETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 192 ~~v~~l~~~~---~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
..|..++++. +-++.+.++|.++.|.+-.|++-..-.+.++++++++.+ .+.|..|
T Consensus 82 s~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d-~adFl~V 140 (237)
T PF00837_consen 82 SPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD-VADFLIV 140 (237)
T ss_pred CceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh-hhheehh
Confidence 3555666554 455677899999999999999988889999999999985 3334433
No 451
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=53.31 E-value=14 Score=27.69 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=16.9
Q ss_pred EEEEcCCChhhHHHHHHHHHH
Q psy160 214 VYFYKLNCNICDQILEGLEKV 234 (346)
Q Consensus 214 v~F~~~~c~~c~~~~~~~~~l 234 (346)
..|+.|+|+.|++....+++-
T Consensus 2 ~iy~~~~C~~crka~~~L~~~ 22 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR 22 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc
Confidence 467899999999877777665
No 452
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=50.79 E-value=14 Score=27.89 Aligned_cols=19 Identities=16% Similarity=0.482 Sum_probs=14.5
Q ss_pred eecCCCChhhHHHHHHHHH
Q psy160 2 YINDENCPECDDILEELEH 20 (346)
Q Consensus 2 ~Fy~~~C~~c~~~~~~~~~ 20 (346)
.|+.|+|+.|++...-|++
T Consensus 3 iY~~~~C~~c~ka~~~L~~ 21 (111)
T cd03036 3 FYEYPKCSTCRKAKKWLDE 21 (111)
T ss_pred EEECCCCHHHHHHHHHHHH
Confidence 4677999999988765553
No 453
>PLN02182 cytidine deaminase
Probab=50.06 E-value=9.2 Score=35.01 Aligned_cols=16 Identities=25% Similarity=0.609 Sum_probs=13.0
Q ss_pred ecCCCChhhHHHHHHHH
Q psy160 3 INDENCPECDDILEELE 19 (346)
Q Consensus 3 Fy~~~C~~c~~~~~~~~ 19 (346)
+++| |++|++++.||.
T Consensus 128 ~~sP-CG~CRQfm~Ef~ 143 (339)
T PLN02182 128 FGTP-CGHCLQFLMEMS 143 (339)
T ss_pred CcCC-CchhHHHHHHhC
Confidence 4566 999999988874
No 454
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=50.01 E-value=28 Score=27.32 Aligned_cols=22 Identities=27% Similarity=0.683 Sum_probs=20.4
Q ss_pred ChhhHHhhCCCCcceEEEEecC
Q psy160 145 DPRYARKWGVTKLPAVVYFRHR 166 (346)
Q Consensus 145 ~~~l~~~~~i~~~Ptl~~~~~g 166 (346)
++.+-++|+|+..|++++.+++
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~ 81 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDG 81 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCC
Confidence 7889999999999999999876
No 455
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=49.66 E-value=23 Score=30.74 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=27.1
Q ss_pred ChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHHHHhh
Q psy160 145 DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 145 ~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~~ 187 (346)
+..++.++||++.||+++-.. .|.|... .+++.+.+..
T Consensus 204 ~~~~a~~~gv~gTPt~~v~~~----~~~g~~~-~~~l~~~i~~ 241 (244)
T COG1651 204 NYKLAQQLGVNGTPTFIVNGK----LVPGLPD-LDELKAIIDE 241 (244)
T ss_pred HHHHHHhcCCCcCCeEEECCe----eecCCCC-HHHHHHHHHH
Confidence 456888999999999988533 6777765 3366666544
No 456
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=49.31 E-value=11 Score=29.58 Aligned_cols=14 Identities=29% Similarity=0.755 Sum_probs=11.5
Q ss_pred CCCChhhHHHHHHHH
Q psy160 5 DENCPECDDILEELE 19 (346)
Q Consensus 5 ~~~C~~c~~~~~~~~ 19 (346)
+| |++|++++.||-
T Consensus 86 sP-CG~CRQ~i~Ef~ 99 (134)
T COG0295 86 SP-CGACRQVLAEFC 99 (134)
T ss_pred CC-cHHHHHHHHHhc
Confidence 45 999999988776
No 457
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=48.61 E-value=1.6e+02 Score=25.10 Aligned_cols=33 Identities=36% Similarity=0.577 Sum_probs=24.2
Q ss_pred cChhhhhhCCCccccEEEEEeCCeEEEeecCcc
Q psy160 249 QDPQLAKRYSIKTFPALVYFRNGNPLIFEGENK 281 (346)
Q Consensus 249 ~~~~~~~~~~i~~~Pti~~~~~g~~~~y~g~~~ 281 (346)
-+|.+-++|+|+..|++++.-...+-.-.|..+
T Consensus 150 IDP~lF~~F~I~~VPafVv~C~~~yD~I~GNIs 182 (212)
T PRK13730 150 IDPTLFSQYGIRSVPALVVFCSQGYDIIRGNLR 182 (212)
T ss_pred ECHHHHHhcCCccccEEEEEcCCCCCEEEeccc
Confidence 489999999999999999975433333455554
No 458
>PRK12559 transcriptional regulator Spx; Provisional
Probab=48.49 E-value=23 Score=27.72 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=17.2
Q ss_pred EEEEECCCChhHHHHHHHHHHH
Q psy160 108 TVFFYETDHKDSVKVLERLEKI 129 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~ 129 (346)
+..|+.|+|+.|++....+++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~ 23 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN 23 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 5688999999999877666553
No 459
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=48.29 E-value=19 Score=27.43 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=16.6
Q ss_pred EEEECCCChhHHHHHHHHHH
Q psy160 109 VFFYETDHKDSVKVLERLEK 128 (346)
Q Consensus 109 v~F~~~~C~~c~~~~~~~~~ 128 (346)
..|+.++|+.|++....+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA 21 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 47889999999988876666
No 460
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=48.20 E-value=16 Score=27.82 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=14.9
Q ss_pred eecCCCChhhHHHHHHHHH
Q psy160 2 YINDENCPECDDILEELEH 20 (346)
Q Consensus 2 ~Fy~~~C~~c~~~~~~~~~ 20 (346)
.|+.++|+.|++...-|++
T Consensus 3 iY~~~~C~~c~ka~~~L~~ 21 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEA 21 (117)
T ss_pred EEeCCCCHHHHHHHHHHHH
Confidence 4778999999988765554
No 461
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=47.83 E-value=25 Score=23.74 Aligned_cols=50 Identities=22% Similarity=0.354 Sum_probs=29.7
Q ss_pred EEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-----cChhhhhhCCCccccEEE
Q psy160 214 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-----QDPQLAKRYSIKTFPALV 266 (346)
Q Consensus 214 v~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-----~~~~~~~~~~i~~~Pti~ 266 (346)
..|+.++|+.|.+..-.+++..-.+. ...... ..+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~e---~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLELN---LKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCCCE---EEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 35778899999877777776654433 111121 124454444455789985
No 462
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=46.92 E-value=38 Score=29.39 Aligned_cols=30 Identities=13% Similarity=0.121 Sum_probs=24.3
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhcc
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGETD 134 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~ 134 (346)
++.++.|....|++|++..|.+.+......
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~ 114 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKKYIDDG 114 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHHhhhcC
Confidence 567999999999999998888888554433
No 463
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=46.64 E-value=60 Score=24.65 Aligned_cols=21 Identities=29% Similarity=0.562 Sum_probs=19.8
Q ss_pred ChHHHHhcCCCCCCeEEEEeC
Q psy160 37 DTEAAAKYNIINLPSLVYFRK 57 (346)
Q Consensus 37 ~~~~c~~~~i~~~Ptl~~f~~ 57 (346)
|+.+-++|+|+..|++++-++
T Consensus 60 dP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 60 DPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred ChhHHhhCCceEcCEEEEEcC
Confidence 899999999999999999887
No 464
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=46.59 E-value=45 Score=29.35 Aligned_cols=60 Identities=8% Similarity=0.026 Sum_probs=37.1
Q ss_pred HHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhC-CCCcceEEEEec
Q psy160 100 LLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWG-VTKLPAVVYFRH 165 (346)
Q Consensus 100 ~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~-i~~~Ptl~~~~~ 165 (346)
+...+++.+++..+.||+.|....-.+-.+-..+...++.....+. .. --..|||.|...
T Consensus 54 ~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~~~~S~~------~d~~pn~Ptl~F~~~ 114 (249)
T PF06053_consen 54 LAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLEYHYSDP------YDNYPNTPTLIFNNY 114 (249)
T ss_pred cCCCCeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeEEeecCc------ccCCCCCCeEEEecC
Confidence 4467799999999999999986554444444444433222222222 22 246899998754
No 465
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=46.30 E-value=4.5 Score=28.88 Aligned_cols=52 Identities=17% Similarity=0.394 Sum_probs=39.8
Q ss_pred ecCCCChhhHHHHHHHHHHHhhh--cccCCeEEEcC-ChHHHHhcCCCCCCeEEE
Q psy160 3 INDENCPECDDILEELEHIDGDA--DQYGIDMVKIS-DTEAAAKYNIINLPSLVY 54 (346)
Q Consensus 3 Fy~~~C~~c~~~~~~~~~~a~~~--~~~~i~~~~~~-~~~~c~~~~i~~~Ptl~~ 54 (346)
|-+..-+.+++....+..+.++. ..+.+.++++. +++++..++|...||++-
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik 57 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLIK 57 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHHT
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEee
Confidence 55566667788888888888875 44557777764 899999999999999763
No 466
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=45.53 E-value=28 Score=26.42 Aligned_cols=22 Identities=14% Similarity=0.139 Sum_probs=17.5
Q ss_pred EEEEECCCChhHHHHHHHHHHH
Q psy160 108 TVFFYETDHKDSVKVLERLEKI 129 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~ 129 (346)
+..|+.|+|+.|++....+++.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~ 23 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH 23 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 4578899999999887777663
No 467
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=45.04 E-value=99 Score=24.23 Aligned_cols=23 Identities=17% Similarity=0.450 Sum_probs=20.9
Q ss_pred ChHHHHhcCCCCCCeEEEEeCCc
Q psy160 37 DTEAAAKYNIINLPSLVYFRKQV 59 (346)
Q Consensus 37 ~~~~c~~~~i~~~Ptl~~f~~~~ 59 (346)
|+.+-++|+|+..|++++-+++.
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGL 82 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCC
Confidence 89999999999999999988763
No 468
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=43.35 E-value=79 Score=21.09 Aligned_cols=65 Identities=9% Similarity=0.078 Sum_probs=35.0
Q ss_pred EEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCC---hhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHHHHh
Q psy160 110 FFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD---PRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLI 186 (346)
Q Consensus 110 ~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~---~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~ 186 (346)
+++.++|++|.+..-.+....-. +....++. ....+..+-...|++.. .+|.. ......|++|+.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~-----~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~~------l~es~aI~~yL~ 70 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIP-----VEQIILQNDDEATPIRMIGAKQVPILEK-DDGSF------MAESLDIVAFID 70 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCC-----eEEEECCCCchHHHHHhcCCCccCEEEe-CCCeE------eehHHHHHHHHh
Confidence 67788999999877766654333 33333331 12222333456788743 22321 222336888775
No 469
>KOG0833|consensus
Probab=43.08 E-value=17 Score=29.75 Aligned_cols=19 Identities=21% Similarity=0.565 Sum_probs=15.5
Q ss_pred ecCCCChhhHHHHHHHHHHH
Q psy160 3 INDENCPECDDILEELEHID 22 (346)
Q Consensus 3 Fy~~~C~~c~~~~~~~~~~a 22 (346)
|.+| |++|++|.-||.+..
T Consensus 101 f~tP-CG~CRQfl~Ef~~~~ 119 (173)
T KOG0833|consen 101 FTTP-CGVCRQFLREFGNAS 119 (173)
T ss_pred cCCC-cHHHHHHHHHHhhcc
Confidence 6666 999999998888754
No 470
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=42.42 E-value=45 Score=29.04 Aligned_cols=58 Identities=9% Similarity=0.152 Sum_probs=44.6
Q ss_pred cCceeecCHHH---HHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccC-CCcEEEEe
Q psy160 86 KNEIEEVNRRM---LDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDN-MDITFVKM 143 (346)
Q Consensus 86 ~~~v~~l~~~~---~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~-~~i~~~~~ 143 (346)
...|..++.++ +-++.+.+++.++.|.+-.||+-..-++.++++++++.+ .++.++.+
T Consensus 81 ns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI 142 (237)
T PF00837_consen 81 NSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYI 142 (237)
T ss_pred CCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhH
Confidence 45777777544 667778889999999999999999999999999999854 23444433
No 471
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=42.40 E-value=31 Score=26.99 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=17.5
Q ss_pred EEEEEcCCChhhHHHHHHHHHHH
Q psy160 213 AVYFYKLNCNICDQILEGLEKVD 235 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la 235 (346)
+..|+.++|+.|++....+.+-.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~g 24 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHD 24 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcC
Confidence 34678899999998777776653
No 472
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=41.06 E-value=48 Score=23.66 Aligned_cols=51 Identities=10% Similarity=0.068 Sum_probs=31.9
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC----ChhhHHhhCCCCcceEEE
Q psy160 107 VTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 107 ~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----~~~l~~~~~i~~~Ptl~~ 162 (346)
.+.+|+.+.|+.|.+..-.+.... ..+....++ .+.+.+.......|++..
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~g-----l~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKN-----IPHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcC-----CCCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 366778889999998766665543 234444443 233555555667898874
No 473
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=39.98 E-value=38 Score=22.64 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=29.2
Q ss_pred EEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-------ChhhHHhhCCCCcceEEE
Q psy160 109 VFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-------DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 109 v~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-------~~~l~~~~~i~~~Ptl~~ 162 (346)
.+|+.+.|+.|.+..-.++...-. .....++ ...+.+.......|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIP-----YEWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC-----cEEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 468889999999877666554333 3333332 233344334557898864
No 474
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=39.44 E-value=1.4e+02 Score=25.37 Aligned_cols=61 Identities=20% Similarity=0.338 Sum_probs=38.9
Q ss_pred ccceEEEEEEcCCCh-hhHHHHHHHHHHHhhcC---cCceEEEEE------cChhhhhhCCC-ccccEEEEE
Q psy160 208 ETQYLAVYFYKLNCN-ICDQILEGLEKVDDECD---IYGIHMVKI------QDPQLAKRYSI-KTFPALVYF 268 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~-~c~~~~~~~~~la~~~~---~~~i~~~~i------~~~~~~~~~~i-~~~Pti~~~ 268 (346)
..++++|.|.=..|+ -|..+...+.++-+++. +.++.++.+ +.++..+.|.. .-.|.+...
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~l 137 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGL 137 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeee
Confidence 567888888877886 48877777777766665 234655555 45666677765 334444443
No 475
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=39.22 E-value=39 Score=26.52 Aligned_cols=21 Identities=10% Similarity=0.049 Sum_probs=16.2
Q ss_pred EEEEECCCChhHHHHHHHHHH
Q psy160 108 TVFFYETDHKDSVKVLERLEK 128 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~ 128 (346)
+..|+.|+|+.|++....+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA 22 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 457889999999987655544
No 476
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=38.15 E-value=73 Score=26.16 Aligned_cols=41 Identities=20% Similarity=0.454 Sum_probs=27.2
Q ss_pred ccceEEEEEEcCCCh-hhHHHHHHHHHHHhhcC--cCceEEEEE
Q psy160 208 ETQYLAVYFYKLNCN-ICDQILEGLEKVDDECD--IYGIHMVKI 248 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~-~c~~~~~~~~~la~~~~--~~~i~~~~i 248 (346)
..++++|.|.-..|+ .|..+...+.++.+++. +.++.++.|
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~I 94 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFI 94 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEE
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEE
Confidence 457888888888885 58776666666665553 235777766
No 477
>PRK12559 transcriptional regulator Spx; Provisional
Probab=36.04 E-value=45 Score=26.10 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=17.5
Q ss_pred EEEEEcCCChhhHHHHHHHHHHH
Q psy160 213 AVYFYKLNCNICDQILEGLEKVD 235 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la 235 (346)
+..|+.|+|+.|++....+++-.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~g 24 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQ 24 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcC
Confidence 35678899999998776666653
No 478
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=35.97 E-value=52 Score=27.04 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=28.5
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM 143 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 143 (346)
+.+|+..-|++|-...+.+.++.+.+.+..+.+.-+
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~ 37 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPF 37 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecc
Confidence 678999999999999999999998874444444443
No 479
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=35.27 E-value=41 Score=25.48 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=17.3
Q ss_pred EEEEcCCChhhHHHHHHHHHHH
Q psy160 214 VYFYKLNCNICDQILEGLEKVD 235 (346)
Q Consensus 214 v~F~~~~c~~c~~~~~~~~~la 235 (346)
..|+.++|+.|++....+++..
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~~g 24 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEEHQ 24 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHHCC
Confidence 4577899999998877777753
No 480
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=35.23 E-value=61 Score=24.25 Aligned_cols=60 Identities=25% Similarity=0.388 Sum_probs=37.6
Q ss_pred ecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC---ChHHHHhcCCC--CCCeEEEE-eCCceeeecCC
Q psy160 3 INDENCPECDDILEELEHIDGDADQYGIDMVKIS---DTEAAAKYNII--NLPSLVYF-RKQVPLLYDGD 66 (346)
Q Consensus 3 Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~~c~~~~i~--~~Ptl~~f-~~~~~~~y~G~ 66 (346)
||..+|+-|......+.+... ...+.++.+. +.++...++++ ..-+.++. .+|. ..|.|.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~G~ 67 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR---GGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE-RVYRGS 67 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC---CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC-EEEEcH
Confidence 789999999999887776621 2357888873 23445677876 22334443 4454 335553
No 481
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=35.09 E-value=53 Score=24.95 Aligned_cols=21 Identities=14% Similarity=0.302 Sum_probs=16.3
Q ss_pred EEEEECCCChhHHHHHHHHHH
Q psy160 108 TVFFYETDHKDSVKVLERLEK 128 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~ 128 (346)
+..|+.|.|+.|++....+++
T Consensus 2 i~iy~~p~C~~crkA~~~L~~ 22 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEA 22 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 457889999999987755554
No 482
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=34.63 E-value=33 Score=28.85 Aligned_cols=27 Identities=7% Similarity=0.089 Sum_probs=22.7
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHhhc
Q psy160 107 VTVFFYETDHKDSVKVLERLEKIDGET 133 (346)
Q Consensus 107 ~lv~F~~~~C~~c~~~~~~~~~~a~~~ 133 (346)
.+.+.+.|-|+-|--+.|.++++....
T Consensus 3 ~lhYifDPmCgWCyGa~Pll~~l~~~~ 29 (212)
T COG3531 3 TLHYIFDPMCGWCYGAAPLLEALSAQP 29 (212)
T ss_pred eeEEecCcchhhhhCccHHHHHHHhcC
Confidence 366788999999999999999988763
No 483
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=34.21 E-value=97 Score=24.57 Aligned_cols=103 Identities=18% Similarity=0.243 Sum_probs=55.5
Q ss_pred EEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-cChhhhhhCCCc----cccEEEEEeCCeEEEeecCccccccc
Q psy160 212 LAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQLAKRYSIK----TFPALVYFRNGNPLIFEGENKILKGT 286 (346)
Q Consensus 212 ~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~~~~~~~i~----~~Pti~~~~~g~~~~y~g~~~~~~~~ 286 (346)
-++.+++|.|+=|..-...++. ++..++.... +...+-++++|. +-=|. .-+|.. .+|-...+.
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~-----~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~--VI~Gy~--vEGHVPa~a-- 95 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKA-----NGFEVKVVETDDFLALKRRLGIPYEMQSCHTA--VINGYY--VEGHVPAEA-- 95 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHh-----CCcEEEEeecCcHHHHHHhcCCChhhccccEE--EEcCEE--EeccCCHHH--
Confidence 3667899999999766555552 2334445444 344566678874 22222 234543 356554333
Q ss_pred hhhhhhhccC-C--CCCCcccCCCCCCccchhhHH---hhcceeEEeeccccce
Q psy160 287 YIGTYISTKA-F--SLIPFCFSEKHPGAFQTELVL---RSLKIKIIGKCEDGVQ 334 (346)
Q Consensus 287 ~~~~~i~~~~-~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 334 (346)
+.+++.+.. . -.+|-... .+..+ +...+.+++.=++|-.
T Consensus 96 -I~~ll~~~pd~~GlavPgmp~--------gs~Gme~~~~~~Y~Vv~~~~~g~~ 140 (149)
T COG3019 96 -IARLLAEKPDAKGLAVPGMPV--------GSPGMEGDRKDSYDVVAVNGDGQS 140 (149)
T ss_pred -HHHHHhCCCCcceecCCCCcC--------CCCCcCCCCCCceEEEEEcCcccE
Confidence 777777654 0 01121111 11122 2667888888777753
No 484
>KOG2507|consensus
Probab=29.76 E-value=1.5e+02 Score=28.15 Aligned_cols=85 Identities=11% Similarity=0.167 Sum_probs=53.4
Q ss_pred cCCcEEEEEECCCChhHHHHH-HHHHHHHhh-ccCCCcEEEEeC-----ChhhHHhhCCCCcceEEEEec-CCcce-ecC
Q psy160 103 ENEFVTVFFYETDHKDSVKVL-ERLEKIDGE-TDNMDITFVKMA-----DPRYARKWGVTKLPAVVYFRH-RFPSI-YRG 173 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~-~~~~~~a~~-~~~~~i~~~~~~-----~~~l~~~~~i~~~Ptl~~~~~-g~~~~-y~g 173 (346)
.++.++|.|-+-......+|. -.|...... .....+..++++ ...+...|.+...|++.++.. |.+.. -.|
T Consensus 17 ~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevitg 96 (506)
T KOG2507|consen 17 GKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVITG 96 (506)
T ss_pred cCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEeec
Confidence 446788888887777777766 234332221 111124444544 456777888999999999864 76665 456
Q ss_pred CcchhHHHHHHHhhc
Q psy160 174 DLSEEEEVLQWLITQ 188 (346)
Q Consensus 174 ~~~~~~~i~~fi~~~ 188 (346)
-.. .++|..-|.+.
T Consensus 97 ~v~-adeL~~~i~Kv 110 (506)
T KOG2507|consen 97 FVT-ADELASSIEKV 110 (506)
T ss_pred ccc-HHHHHHHHHHH
Confidence 665 55777777664
No 485
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=29.52 E-value=2.1e+02 Score=24.37 Aligned_cols=41 Identities=27% Similarity=0.324 Sum_probs=29.1
Q ss_pred ChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHHHHh
Q psy160 37 DTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTWLT 78 (346)
Q Consensus 37 ~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~~i~ 78 (346)
|+.+-++|+|+..|++++......-.-.|+++-. .-++.+.
T Consensus 151 DP~lF~~F~I~~VPafVv~C~~~yD~I~GNIsl~-~ALe~iA 191 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCSQGYDIIRGNLRVG-QALEKVA 191 (212)
T ss_pred CHHHHHhcCCccccEEEEEcCCCCCEEEecccHH-HHHHHHH
Confidence 8999999999999999998654333446776664 3333333
No 486
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=29.01 E-value=67 Score=25.15 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=15.8
Q ss_pred EEEEcCCChhhHHHHHHHHHH
Q psy160 214 VYFYKLNCNICDQILEGLEKV 234 (346)
Q Consensus 214 v~F~~~~c~~c~~~~~~~~~l 234 (346)
..|+.++|+.|++....+++-
T Consensus 3 ~iY~~~~C~~crkA~~~L~~~ 23 (132)
T PRK13344 3 KIYTISSCTSCKKAKTWLNAH 23 (132)
T ss_pred EEEeCCCCHHHHHHHHHHHHc
Confidence 467789999999876666554
No 487
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=28.51 E-value=1.2e+02 Score=24.73 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=28.8
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
+..|+..-|+.|-...+.+.++.+.+.+..+.+.-+
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~ 37 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPF 37 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecc
Confidence 567889999999999999999999985445555544
No 488
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=27.73 E-value=34 Score=24.40 Aligned_cols=53 Identities=13% Similarity=0.273 Sum_probs=37.8
Q ss_pred EEECCCChhHHHHHHHHHHHHhhccCC--CcEEEEeC-ChhhHHhhCCCCcceEEE
Q psy160 110 FFYETDHKDSVKVLERLEKIDGETDNM--DITFVKMA-DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 110 ~F~~~~C~~c~~~~~~~~~~a~~~~~~--~i~~~~~~-~~~l~~~~~i~~~Ptl~~ 162 (346)
+|-+..-+.+.+....++.+.+...+. .+.++++. ++.++..++|-..||++-
T Consensus 2 LyV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik 57 (82)
T PF07689_consen 2 LYVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLIK 57 (82)
T ss_dssp EEESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHHT
T ss_pred eEECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEee
Confidence 455555566677777777777765332 35555654 899999999999999873
No 489
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=27.39 E-value=56 Score=27.78 Aligned_cols=23 Identities=13% Similarity=0.384 Sum_probs=17.5
Q ss_pred eecCCCChhhHHHHHHHHHHHhh
Q psy160 2 YINDENCPECDDILEELEHIDGD 24 (346)
Q Consensus 2 ~Fy~~~C~~c~~~~~~~~~~a~~ 24 (346)
.|++..|..|......|.++++.
T Consensus 4 LFTSQGCsSCPpAD~~L~~l~~~ 26 (202)
T PF06764_consen 4 LFTSQGCSSCPPADRLLSELAAR 26 (202)
T ss_dssp EEE-TT-TT-HHHHHHHHHHHHH
T ss_pred EecCCCCCCCcHHHHHHHHhhcC
Confidence 58889999999998889988887
No 490
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=27.35 E-value=2.5e+02 Score=20.46 Aligned_cols=76 Identities=13% Similarity=0.146 Sum_probs=39.7
Q ss_pred HHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEcChhhhhhCCCccccEEEEEeCC-e--EEEe
Q psy160 200 VMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNG-N--PLIF 276 (346)
Q Consensus 200 ~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~i~~~Pti~~~~~g-~--~~~y 276 (346)
+++.. ++.++..+|.++..--. .-...|+++|..+++ +..|.---.... ......+-| +++|+.. . ...|
T Consensus 8 ~eL~~-id~~kr~iIgYF~~~~~---~eY~~f~kvA~~lr~-dC~F~v~~G~~~-~~~~~~~~~-~i~frp~~~~~~~~y 80 (91)
T cd03070 8 DELNN-VDRSKRNIIGYFESKDS---DEYDNFRKVANILRD-DCSFLVGFGDVT-KPERPPGDN-IIYFPPGHNAPDMVY 80 (91)
T ss_pred HHHHh-hCcCCceEEEEEcCCCC---hhHHHHHHHHHHHhh-cCeEEEEecccc-ccccCCCCC-eEEECCCCCCCceEE
Confidence 44444 44455555665543221 346788999999986 555443311111 222233434 4455443 2 3678
Q ss_pred ecCccc
Q psy160 277 EGENKI 282 (346)
Q Consensus 277 ~g~~~~ 282 (346)
.|+.++
T Consensus 81 ~G~~tn 86 (91)
T cd03070 81 LGSLTN 86 (91)
T ss_pred ccCCCC
Confidence 998763
No 491
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=25.44 E-value=80 Score=25.14 Aligned_cols=24 Identities=17% Similarity=0.558 Sum_probs=19.8
Q ss_pred cEEEEeCChhhHHhhCCCCcceEE
Q psy160 138 ITFVKMADPRYARKWGVTKLPAVV 161 (346)
Q Consensus 138 i~~~~~~~~~l~~~~~i~~~Ptl~ 161 (346)
+.+.-++-.+|+++++++.||.++
T Consensus 113 l~l~P~sgddLA~rL~l~HYPvLI 136 (142)
T PF11072_consen 113 LPLLPVSGDDLARRLGLSHYPVLI 136 (142)
T ss_pred CeecCCCHHHHHHHhCCCcccEEe
Confidence 555556678999999999999876
No 492
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=25.20 E-value=1.3e+02 Score=22.84 Aligned_cols=48 Identities=23% Similarity=0.386 Sum_probs=26.2
Q ss_pred ChhhHHHHHHHHHHHhhhcccCCeEEEcC----ChHHHHhcC--CCCCCeEEEEeC
Q psy160 8 CPECDDILEELEHIDGDADQYGIDMVKIS----DTEAAAKYN--IINLPSLVYFRK 57 (346)
Q Consensus 8 C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----~~~~c~~~~--i~~~Ptl~~f~~ 57 (346)
|+||-.++-.|.--...-.. +.+..++ -..+....| =++.|+|++=.+
T Consensus 24 Cp~c~~iEGlLa~~P~l~~~--ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~ 77 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDLRER--LDVRRVDFPRPRQAVIALLGEANQSLPVLVLADG 77 (112)
T ss_pred CCchHHHHhHHhhChhhhhc--ccEEEeCCCCchHHHHHHhChhccCCCEEEeCCC
Confidence 77887776655533332222 3444443 235555555 357798887554
No 493
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=25.07 E-value=74 Score=23.83 Aligned_cols=35 Identities=17% Similarity=0.465 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEE
Q psy160 122 VLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVV 161 (346)
Q Consensus 122 ~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~ 161 (346)
-+..+++++.. +...-++-.++++++|++.||.++
T Consensus 64 ~l~~Lr~lapg-----l~l~P~sgddLa~rL~l~hYPvLi 98 (105)
T TIGR03765 64 ALQRLRALAPG-----LPLLPVSGDDLAERLGLRHYPVLI 98 (105)
T ss_pred HHHHHHHHcCC-----CcccCCCHHHHHHHhCCCcccEEE
Confidence 34455555532 555566678999999999999876
No 494
>COG1550 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.75 E-value=1.1e+02 Score=22.28 Aligned_cols=45 Identities=7% Similarity=0.051 Sum_probs=35.2
Q ss_pred ecCCCChhhHHHHHHHHHHHhhh-cccCCeEEEcCChHHHHhcCCC
Q psy160 3 INDENCPECDDILEELEHIDGDA-DQYGIDMVKISDTEAAAKYNII 47 (346)
Q Consensus 3 Fy~~~C~~c~~~~~~~~~~a~~~-~~~~i~~~~~~~~~~c~~~~i~ 47 (346)
+-.+||..=++-...++.+.+.+ .+++|.++.++..++-++.+|.
T Consensus 10 l~~~~v~sLKeKRavlr~iv~rLk~KFnvSvaE~~~qD~~qr~~Ig 55 (95)
T COG1550 10 LRLYDVRSLKEKRAVLRPIVTRLKNKFNVSVAETGYQDLWQRAEIG 55 (95)
T ss_pred EEecccccHHHHHHHHHHHHHHHHHhcceeeeecCchhhhhhheee
Confidence 44678887777777788888888 5679999999999988876653
No 495
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=24.75 E-value=96 Score=23.52 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=16.7
Q ss_pred EEEEcCCChhhHHHHHHHHHHH
Q psy160 214 VYFYKLNCNICDQILEGLEKVD 235 (346)
Q Consensus 214 v~F~~~~c~~c~~~~~~~~~la 235 (346)
..|+.|.|..|++....+++-.
T Consensus 3 ~iy~~p~C~~crkA~~~L~~~g 24 (113)
T cd03033 3 IFYEKPGCANNARQKALLEAAG 24 (113)
T ss_pred EEEECCCCHHHHHHHHHHHHcC
Confidence 4678899999998776666553
No 496
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=24.70 E-value=63 Score=26.60 Aligned_cols=26 Identities=19% Similarity=0.101 Sum_probs=23.7
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhc
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGET 133 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~ 133 (346)
+.+|+.+.|+.|-...+.++++.+.+
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~ 28 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEY 28 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHh
Confidence 56899999999999999999999887
No 497
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.42 E-value=1.2e+02 Score=26.16 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=26.1
Q ss_pred ChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHHHHhh
Q psy160 145 DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 145 ~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~~ 187 (346)
..+.+++.||++.|++++ +..+...|..+.+ -+.+-+.+
T Consensus 173 d~~~A~e~gI~gVP~fv~---d~~~~V~Gaq~~~-v~~~al~~ 211 (225)
T COG2761 173 DEAAAQEMGIRGVPTFVF---DGKYAVSGAQPYD-VLEDALRQ 211 (225)
T ss_pred HHHHHHHCCCccCceEEE---cCcEeecCCCCHH-HHHHHHHH
Confidence 455788999999999999 3345567776633 44444433
No 498
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=24.40 E-value=84 Score=25.85 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=23.3
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcC
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECD 239 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~ 239 (346)
+..|+.+.|+.|-...+.+.++.+.+.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 457888999999999999999998873
No 499
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=24.40 E-value=5e+02 Score=23.02 Aligned_cols=97 Identities=15% Similarity=0.155 Sum_probs=50.4
Q ss_pred ChhhHHhhCCCCcceEEEEecCCcceecC-CcchhHHHHHHHhhccccCcEEEccHHHHHHHHh----cc-c-eEEEEEE
Q psy160 145 DPRYARKWGVTKLPAVVYFRHRFPSIYRG-DLSEEEEVLQWLITQKTEDRIELITRVMLETMVE----ET-Q-YLAVYFY 217 (346)
Q Consensus 145 ~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g-~~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~~~----~~-~-~~lv~F~ 217 (346)
.+++.++++|.-.|--+.+.+ +. ..+| ..+.+ ++.+.+.+....+.....+..+|.++.+ +. + .+.+-+.
T Consensus 13 ~~~~~~~~~i~vvPl~i~~~~-~~-y~D~~~i~~~-efy~~l~~~~~~p~TS~ps~~~~~~~f~~~~~~gyd~ii~i~iS 89 (280)
T PF02645_consen 13 PPELAEEYGIYVVPLNIIIDG-KE-YRDGVDISPE-EFYEKLRESGEIPKTSQPSPGEFEEAFEKLLEEGYDEIIVITIS 89 (280)
T ss_dssp -HHHHHHTTEEEE--EEEETT-EE-EETTTTSCHH-HHHHHHHHTTSEEEEE---HHHHHHHHHHHHHTTTSEEEEEES-
T ss_pred CHHHHHhCCeEEEeEEEecCC-eE-EecCCCCCHH-HHHHHHHhcCCCceecCCCHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 467888999999998877743 22 2244 56644 8888886554332334455666665433 22 3 3444344
Q ss_pred cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 218 KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 218 ~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
+...+.++ ....+++.+.+.++.+...
T Consensus 90 s~LSgty~----~a~~aa~~~~~~~i~ViDS 116 (280)
T PF02645_consen 90 SGLSGTYN----SARLAAKMLPDIKIHVIDS 116 (280)
T ss_dssp TTT-THHH----HHHHHHHHHTTTEEEEEE-
T ss_pred cchhhHHH----HHHHHHhhcCcCEEEEEeC
Confidence 44555554 4445555554335666665
No 500
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=24.12 E-value=2e+02 Score=22.23 Aligned_cols=46 Identities=22% Similarity=0.436 Sum_probs=31.0
Q ss_pred CChhhHHHHHHHHHHHhhh----cccCCeEE----EcCChHHHHhcCCCCCCeEEE
Q psy160 7 NCPECDDILEELEHIDGDA----DQYGIDMV----KISDTEAAAKYNIINLPSLVY 54 (346)
Q Consensus 7 ~C~~c~~~~~~~~~~a~~~----~~~~i~~~----~~~~~~~c~~~~i~~~Ptl~~ 54 (346)
-|..|......+.++.+++ ...||.+. .+++.++...+ -.-|++.+
T Consensus 14 tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~~~~~~~--~~S~~I~i 67 (120)
T PF10865_consen 14 TCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEEEFARQP--LESPTIRI 67 (120)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChHHHhhcc--cCCCeeeE
Confidence 6999988877777776665 56676552 35677787777 33476554
Done!