RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy160
(346 letters)
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 72.7 bits (178), Expect = 1e-14
Identities = 31/227 (13%), Positives = 79/227 (34%), Gaps = 18/227 (7%)
Query: 86 KNEIEEVNRRMLDKLLEENEFVTVFFYET--DHKDSVKVLERL----EKIDGETDNMDIT 139
+ + VN + + ++ E + + ++E D K S + E E ++ +
Sbjct: 12 VDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVG 71
Query: 140 FVKM---ADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQKTEDRIEL 196
F + D A+K G+T+ ++ F+ Y G+ + ++++L+ + +
Sbjct: 72 FGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEVIEYDGEF-SADTLVEFLLDVLEDPVELI 130
Query: 197 ITRVMLETMVEETQYLAV--YFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLA 254
L+ + + YF + E E+ + D ++A
Sbjct: 131 EGERELQAFENIEDEIKLIGYFKNKDSEHYKAFKEAAEEFHPYIPFF-----ATFDSKVA 185
Query: 255 KRYSIKTFPALVYFRNGNPLIFEGENKILKGTYIGTYISTKAFSLIP 301
K+ ++K + ++ +K I ++ S +
Sbjct: 186 KKLTLK-LNEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHRRSTLR 231
Score = 62.3 bits (151), Expect = 5e-11
Identities = 34/226 (15%), Positives = 78/226 (34%), Gaps = 16/226 (7%)
Query: 16 EELEHIDGDADQYGIDMVKI---SDTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEK 72
LE + G+ + D A K + S+ F++ + YDG+ +
Sbjct: 56 LILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEVIEYDGEF-SADT 114
Query: 73 ILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGE 132
++ +L ++ E + + E+E + +++ + K + +
Sbjct: 115 LVEFLLDVLEDPVELIEGERELQAFEN--IEDEIKLIGYFKNKDSEHYKAFKEAAEEFHP 172
Query: 133 TDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRF--PSIYRGDLSEEEEVLQWLITQKT 190
I F D + A+K + KL + ++ P + EEE++ + + +
Sbjct: 173 ----YIPFFATFDSKVAKKLTL-KLNEIDFYEAFMEEPVTIPDKPNSEEEIVNF-VEEHR 226
Query: 191 EDRIELITRVMLETMVEE--TQYLAVYFYKLNCNICDQILEGLEKV 234
+ + + E+ V F + + LE L+ V
Sbjct: 227 RSTLRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSV 272
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 70.6 bits (173), Expect = 2e-14
Identities = 43/219 (19%), Positives = 77/219 (35%), Gaps = 19/219 (8%)
Query: 79 SQDVFEIKNE--IEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGE--TD 134
S+D E+K E + +N D + + + V + FY + EKI
Sbjct: 5 SEDDLEVKEENGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDK 64
Query: 135 NMDITFVKM---ADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQKTE 191
+ I K+ + A ++ V+ P + + Y G +EE++ +
Sbjct: 65 DPPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQAVDYEGS-RTQEEIVAKVREVSQP 123
Query: 192 DRIELITRVM------LETMVEETQYLAVYFYKLNCNICDQILEGLEKV-----DDECDI 240
D + + +V + + V FY C C ++ EK I
Sbjct: 124 DWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPI 183
Query: 241 YGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPLIFEGE 279
+ + LAKR+ + +P L FR G P + G
Sbjct: 184 PLAKVDATAETDLAKRFDVSGYPTLKIFRKGRPYDYNGP 222
Score = 62.6 bits (152), Expect = 2e-11
Identities = 36/188 (19%), Positives = 76/188 (40%), Gaps = 12/188 (6%)
Query: 9 PECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQVPLLYDGDLF 68
PE + I L+ D ID + A+++++ P++ +K + Y+G
Sbjct: 52 PEYEKIANILKDKDPPIPVAKIDATS--ASVLASRFDVSGYPTIKILKKGQAVDYEGS-R 108
Query: 69 DEEKILTWLTSQ---DVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLER 125
+E+I+ + D + + D+++ + + + V FY K+
Sbjct: 109 TQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPE 168
Query: 126 LEKI--DGETDNMDITFVKM---ADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEE 180
EK + + I K+ A+ A+++ V+ P + FR P Y G E+
Sbjct: 169 YEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRPYDYNGPR-EKYG 227
Query: 181 VLQWLITQ 188
++ ++I Q
Sbjct: 228 IVDYMIEQ 235
Score = 40.2 bits (94), Expect = 4e-04
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 8 CPECDDILEELEHI--DGDADQYGIDMVKI---SDTEAAAKYNIINLPSLVYFRKQVPLL 62
C C + E E + I + K+ ++T+ A ++++ P+L FRK P
Sbjct: 159 CGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRPYD 218
Query: 63 YDGDLFDEEKILTWLTSQ 80
Y+G ++ I+ ++ Q
Sbjct: 219 YNGP-REKYGIVDYMIEQ 235
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 70.2 bits (171), Expect = 2e-13
Identities = 42/279 (15%), Positives = 89/279 (31%), Gaps = 19/279 (6%)
Query: 8 CPECDDILEELEHIDGDADQYGIDMVKI---SDTEAAAKYNIINLPSLVYFRKQVPLLYD 64
P +L EL + + + YNI P+ V F + Y+
Sbjct: 467 SPPSRALLPELRKA-STLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQSSIHEYE 525
Query: 65 GDLFDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLE 124
G E+IL ++ + + L K + +E V FY S ++
Sbjct: 526 GH-HSAEQILEFIEDLRNPSVV-SLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMP 583
Query: 125 RLEKIDGETDNMDITFVKM---ADPRYARKWGVTKLPAVVYFRHR-----FPSIYRGDLS 176
+++ T I + + + V + P + ++ + Y G
Sbjct: 584 EWKRM-ARTLTGLINVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNR 642
Query: 177 EEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDD 236
+ + W + + I+L + E +++ + V FY E +
Sbjct: 643 DAYSLRSWGLGFLPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLAR 702
Query: 237 ECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGN 272
+ K+ PQ ++ IK +P++ ++
Sbjct: 703 MIKGK-VRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYER 740
Score = 54.4 bits (130), Expect = 3e-08
Identities = 31/253 (12%), Positives = 74/253 (29%), Gaps = 15/253 (5%)
Query: 37 DTEAAAKYNIINLPSLVYFRK-QVPLLYDGDLFDEEKILTWLTSQDVFEIKNEIEEVNRR 95
D + + PSL FR + Y+GD +E ++ + +++ + E++
Sbjct: 176 DRMLCRMKGVNSYPSLFIFRSGMAAVKYNGD-RSKESLVAFAMQH----VRSTVTELSTG 230
Query: 96 MLDKLLEENEFVTVFFYET---DHKDSVKVLERLEKIDGETDNMDITFVKM-ADPRYARK 151
+E V + T +D + RL +++ +V A +
Sbjct: 231 NFVNAIETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVDCDAQDSLCKS 290
Query: 152 WGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWL-ITQKTEDRIELITRVMLETMVEETQ 210
T + + L I + + + + +
Sbjct: 291 LDTTASTTAYFPPGATLNDREKSSVLFLNSLDAKEIYMEIIHNLPDFELLSANQLEDRLA 350
Query: 211 YLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVY 267
+ + + L+K+ I +V+ P + + P+L
Sbjct: 351 HHRWLVFFHFGKNENANDPELKKLKTLLKNEHIQVVRFDCSSAPGICSDLYVF-QPSLAV 409
Query: 268 FRNGNPLIFEGEN 280
F+ +E +
Sbjct: 410 FKGQGTKEYEIHH 422
Score = 52.1 bits (124), Expect = 2e-07
Identities = 36/285 (12%), Positives = 78/285 (27%), Gaps = 21/285 (7%)
Query: 8 CPECDDILEELEHIDGDADQYGIDMV----KISDTEAAAKYNIINLPSLVYFRKQVPLLY 63
C + +D L + G+ V + + + +
Sbjct: 251 CSKGEDCLTSQTRLRLSGMLDGLVNVGWVDCDAQDSLCKSLDTTASTTAYFPPGATLNDR 310
Query: 64 DGDLFDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVL 123
+ L E+ + + VFF+ ++++
Sbjct: 311 EKSSVLFLNSLDAKEIYMEIIHNLPDFELLSANQLEDRLAHHRWLVFFHFGKNENANDPE 370
Query: 124 ERLEKIDGETDNMDITFVKM---ADPRYARKWGVTKLPAVVYFR---HRFPSIYRGDLSE 177
L+K+ N I V+ + P V + P++ F+ + I+ G
Sbjct: 371 --LKKLKTLLKNEHIQVVRFDCSSAPGICSDLYVFQ-PSLAVFKGQGTKEYEIHHGKKIL 427
Query: 178 EEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDE 237
+ +L + L + + V F+ +L L K
Sbjct: 428 YD-ILAFAKESVNSHVTTL---GPQNFPASDKEPWLVDFFAPWSPPSRALLPELRKASTL 483
Query: 238 CDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPLIFEGE 279
+ + + L Y+I+ +P V F + +EG
Sbjct: 484 LY-GQLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQSSIHEYEGH 527
Score = 36.7 bits (84), Expect = 0.013
Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 4/114 (3%)
Query: 161 VYFRHRFPSIYRGDLSEEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLN 220
Y G + I + R + V + V FY
Sbjct: 85 KYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFVNFYSPG 144
Query: 221 CNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNG 271
+ + + E D + + + D L + + ++P+L FR+G
Sbjct: 145 SSHSHDLAPTWREFAKEVDGL-LRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSG 197
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.0 bits (134), Expect = 8e-09
Identities = 67/416 (16%), Positives = 135/416 (32%), Gaps = 102/416 (24%)
Query: 2 YINDENCPECDDILEELE----HIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRK 57
++N +NC + +LE L+ ID + I + + + L K
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL----LKSK 241
Query: 58 QVP--LL-----YDG---DLFDEE-KILTWLTSQD--VFEIKNEIEEVNRRM--LDKLLE 102
LL + + F+ KIL LT++ V + + + + L
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 103 ENEFVTVF--FYETDHKD----SVKVLERLEKIDGETDNMDITFVKMADP-RYARKWGVT 155
+E ++ + + +D + R I E + D ++ +T
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE---SIRDGLATWDNWKHVNCDKLT 356
Query: 156 KL---------PAVVYFRHRFP--SIYRGDLSEEEEVLQ--WLITQKTEDRI---ELITR 199
+ PA +R F S++ +L W K++ + +L
Sbjct: 357 TIIESSLNVLEPA--EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 200 VMLETMVEETQY--LAVYF---------YKLNCNICDQ--ILEGLEKVD---DECDIY-- 241
++E +E+ ++Y Y L+ +I D I + + D D Y
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 242 ---GIHMVKIQDPQLAKRYSIKTFPALVY--FRNGNPLIFEGENKILKGTYIGTYISTKA 296
G H+ I + +R ++ F + + FR F E KI + +
Sbjct: 475 SHIGHHLKNI---EHPERMTL--FRMV-FLDFR------FL-EQKIRHDSTAWNASGSIL 521
Query: 297 FSLIPFCFSEKH--PGAFQTELVLRSLK--------IKIIGKCEDGVQKLDIGLNF 342
+L F + + + E ++ ++ I K D ++ I L
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR---IALMA 574
Score = 54.1 bits (129), Expect = 4e-08
Identities = 58/358 (16%), Positives = 117/358 (32%), Gaps = 78/358 (21%)
Query: 37 DTEAAA---KYNIINLPSLVYFRKQVPLLYDGDLFD-EEKILTWLTSQDVFEIKNEIEEV 92
D E +Y I L F + + D D ++ + L+ +++ I + V
Sbjct: 8 DFETGEHQYQYKDI----LSVFED--AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 93 NR--RMLDKLLEENE-FVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYA 149
+ R+ LL + E V F E + ++ ++ + M +++ D Y
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 150 -----RKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVL---------QWLITQKTEDRIE 195
K+ V++L + R ++ L + VL W+
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQ---ALLE--LRPAKNVLIDGVLGSGKTWVALD------- 169
Query: 196 LITRVMLETMVEETQYLAVYFYKL-NCNICDQILEGLEK----VDDECDIYGIHMVKIQD 250
V L V+ +++ L NCN + +LE L+K +D H I+
Sbjct: 170 ----VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 251 PQLAKRYSIKTFPALVYFRNGNPLI-------------FEGENKILKGT---YIGTYIST 294
+ + ++ + N L+ F KIL T + ++S
Sbjct: 226 RIHSIQAELRRLLKSKPYENC--LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 295 KAFSLIPFCFSEKHPGAFQTELVLRSLKIKIIG-KCED------GVQKLDIGLNFGAM 345
+ I + H T ++SL +K + + +D + +
Sbjct: 284 ATTTHIS---LDHHSMTL-TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAES 336
Score = 33.3 bits (75), Expect = 0.13
Identities = 53/364 (14%), Positives = 97/364 (26%), Gaps = 104/364 (28%)
Query: 10 ECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFD 69
E D I+ D + L L + V + L
Sbjct: 50 EIDHIIMS------------------KDAVSGTLRLFWTL--LSKQEEMVQKFVEEVL-- 87
Query: 70 EEKILTWLTSQDVFEIKNEIEEVNRRM------LDKLLEENE-FVTVFFYETDHKDSVK- 121
+L S IK E + + D+L +N+ F ++
Sbjct: 88 -RINYKFLMSP----IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 122 VLERLEKIDGETDNMDITFVKMADPRYARKWGVTK--LPAVVY----FRHRFP-SIY--- 171
L L + + G K + V + + I+
Sbjct: 143 ALLELRPAKN------VLIDGVL--------GSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 172 RGDLSEEEEVLQWL------ITQKTEDRIELITRVMLETMVEETQYLAVYF----YKLNC 221
+ + E VL+ L I R + + + L L Y+ NC
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRLLKSKPYE-NC 246
Query: 222 -----NICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTF--PALVYFRNGNPL 274
N+ + + + C I ++ + Q+ S T +L +
Sbjct: 247 LLVLLNVQNA--KAWNAFNLSCKI----LLTTRFKQVTDFLSAATTTHISLDHHSMT--- 297
Query: 275 IFEGENKILKGTYIGTYISTKAFSLIPFCFSEKHPGAFQTELVLRSLKIKIIGK-CEDGV 333
+ E K L + Y+ + L P +P ++ II + DG+
Sbjct: 298 LTPDEVKSL----LLKYLDCRPQDL-PREVLTTNP-----------RRLSIIAESIRDGL 341
Query: 334 QKLD 337
D
Sbjct: 342 ATWD 345
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 55.0 bits (132), Expect = 1e-08
Identities = 40/304 (13%), Positives = 96/304 (31%), Gaps = 30/304 (9%)
Query: 8 CPECDDILEELEHI-----DGDADQYGIDMVKI---SDTEAAAKYNIINLPSLVYFR--K 57
C + E + ++ + ++ ++ A +Y I P+L FR
Sbjct: 34 CRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGM 93
Query: 58 QVPLLYDGDLFDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHK 117
+ Y G + + ++ Q + I+E+ L+ ++ + ++E
Sbjct: 94 MMKREYRGQR-SVKALADYIRQQ----KSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDS 148
Query: 118 DSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRF---PSIYRGD 174
D+ +V ER+ D A ++ + ++Y +Y G
Sbjct: 149 DNYRVFERVAN-----ILHDDCAFLSAFGDVSKPERYSG-DNIIYKPPGHSAPDMVYLGA 202
Query: 175 LSEEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKL-NCNICDQILEGLEK 233
++ + W I K + IT E + EE + F+ + + + +
Sbjct: 203 MTNFDVTYNW-IQDKCVPLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVAR 261
Query: 234 VD----DECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPLIFEGENKILKGTYIG 289
+ K + P L + + P + + +F +L +
Sbjct: 262 QLISEKGTINFLHADCDKFRHPLLHIQKTPADCPVIAIDSFRHMYVFGDFKDVLIPGKLK 321
Query: 290 TYIS 293
++
Sbjct: 322 QFVF 325
Score = 52.3 bits (125), Expect = 9e-08
Identities = 31/226 (13%), Positives = 78/226 (34%), Gaps = 21/226 (9%)
Query: 88 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKI-----DGETDNMDITFVK 142
EI ++ +D++L + V FY + S + E+ + + + F +
Sbjct: 6 EITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFAR 65
Query: 143 M---ADPRYARKWGVTKLPAVVYFRH--RFPSIYRGDLSEEEEVLQWLITQKTEDRIELI 197
+ A+++ ++K P + FR+ YRG + + ++ QK++ E+
Sbjct: 66 VDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQR-SVKALADYIRQQKSDPIQEIR 124
Query: 198 TRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRY 257
+ T+ + + YF + + + + D+C ++K
Sbjct: 125 DLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFL------SAFGDVSKPE 178
Query: 258 SIKTFPALVY--FRNGNPLIFEGENKILKGTYIGTYISTKAFSLIP 301
+ + +++ G + +I K L+
Sbjct: 179 RYSGDNIIYKPPGHSAPDMVYLGA--MTNFDVTYNWIQDKCVPLVR 222
Score = 38.8 bits (90), Expect = 0.002
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 8/92 (8%)
Query: 190 TEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDEC-----DIYGIH 244
I + ++ ++ V FY C + E+ D + +
Sbjct: 3 LGSEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVV 62
Query: 245 MVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273
++ Q +A+RY I +P L FRNG
Sbjct: 63 FARVDCDQHSDIAQRYRISKYPTLKLFRNGMM 94
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project protein structural and
functional analyses; 2.30A {Aquifex aeolicus} PDB:
2ayt_A
Length = 229
Score = 50.8 bits (121), Expect = 1e-07
Identities = 33/210 (15%), Positives = 62/210 (29%), Gaps = 30/210 (14%)
Query: 88 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMD----ITFVK- 142
++ + + K +E + +F + E L++ I
Sbjct: 6 DVRMQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIY 65
Query: 143 --MADPRYARKWGVTKLPAVVYFRHRFPSI-YRGDLSEEE--------EVLQWLITQKTE 191
K+GV ++P +V + I Y G + E + Q +E
Sbjct: 66 SPFTHKEETEKYGVDRVPTIVIEGDKDYGIRYIGLPAGLEFTTLINGIFHVSQRKPQLSE 125
Query: 192 DRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--- 248
+EL+ V + F +C C D I I
Sbjct: 126 KTLELLQVV-------DIPIEIWVFVTTSCGYCPSAAVMAWDFALAND--YITSKVIDAS 176
Query: 249 QDPQLAKRYSIKTFPALVYFRNGNPLIFEG 278
++ LA+++ + P +V N F G
Sbjct: 177 ENQDLAEQFQVVGVPKIVI--NKGVAEFVG 204
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 51.2 bits (122), Expect = 2e-07
Identities = 38/232 (16%), Positives = 85/232 (36%), Gaps = 14/232 (6%)
Query: 9 PECDDILEELEHIDGDADQYGIDMVKI---SDTEAAAKYNIINLPSLVYFRKQVPLLYDG 65
+ LE + + I V + + + A K SL + + +DG
Sbjct: 47 KQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGFDEEGSLYVLKGDRTIEFDG 106
Query: 66 DLFDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLER 125
+ F + ++ +L ++ ++ + ++ E++ + F++++ + K E
Sbjct: 107 E-FAADVLVEFLLDLIEDPVEIINSKLEVQAFER--IEDQIKLIGFFKSEESEYYKAFEE 163
Query: 126 LEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRF--PSIYRGDLSEEEEVLQ 183
E I F D A+K + K+ V ++ P EEE+++
Sbjct: 164 A----AEHFQPYIKFFATFDKGVAKKLSL-KMNEVDFYEPFMDEPIAIPDKPYTEEELVE 218
Query: 184 WLITQKTEDRIELITRVMLETMVEET-QYLAVYFYKLNCNICDQILEGLEKV 234
++ + L M ET ++ V F + + + LE L++V
Sbjct: 219 FVKEHQRPTLRRLRPEDMFETWEDDLNGIHIVAFAERSDPDGYEFLEILKQV 270
Score = 51.2 bits (122), Expect = 2e-07
Identities = 24/230 (10%), Positives = 82/230 (35%), Gaps = 18/230 (7%)
Query: 83 FEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDH------KDSVKVLERLEKIDGETDNM 136
++ K+ + + + ++L++ + + ++++E+ K LE + ++
Sbjct: 7 YDGKDRVVSLTEKNFKQVLKKYDVLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHK 66
Query: 137 DITFVKM---ADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQKTEDR 193
DI FV + + + A+K G + ++ + + G+ + ++++L+ +
Sbjct: 67 DIGFVMVDAKKEAKLAKKLGFDEEGSLYVLKGDRTIEFDGEF-AADVLVEFLLDLIEDPV 125
Query: 194 IELITRVMLETMVEETQYLAV--YFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDP 251
+ +++ ++ + + +F E E + D
Sbjct: 126 EIINSKLEVQAFERIEDQIKLIGFFKSEESEYYKAFEEAAEHFQPYIKFF-----ATFDK 180
Query: 252 QLAKRYSIKTFPALVYFRNGNPLIFEGENKILKGTYIGTYISTKAFSLIP 301
+AK+ S+K + ++ +K + ++ +
Sbjct: 181 GVAKKLSLK-MNEVDFYEPFMDEPIAIPDKPYTEEELVEFVKEHQRPTLR 229
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
2.90A {Bacillus cereus}
Length = 105
Score = 46.1 bits (110), Expect = 7e-07
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 195 ELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDP 251
T L T +EE Q + ++ NC +CD +L + V + + + ++I
Sbjct: 4 TFKTIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN--YVEKIEILLQDMQ 61
Query: 252 QLAKRYSIKTFPALVYFRNG 271
++A RY++ T P ++ F NG
Sbjct: 62 EIAGRYAVFTGPTVLLFYNG 81
Score = 28.8 bits (65), Expect = 0.94
Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 6 ENCPECDDILEELEHIDGDADQYGIDMVKISD-TEAAAKYNIINLPSLVYFRK 57
ENC CD +L ++ ++ + + + + D E A +Y + P+++ F
Sbjct: 28 ENCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQEIAGRYAVFTGPTVLLFYN 80
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 48.1 bits (114), Expect = 2e-06
Identities = 28/207 (13%), Positives = 65/207 (31%), Gaps = 16/207 (7%)
Query: 73 ILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERL-EKIDG 131
+ + + + L+E +E + F++ DS K + E ID
Sbjct: 7 LEVLFQGPGSEFAT-TLPDGA--AAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAID- 62
Query: 132 ETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQKTE 191
DI F ++ K+ + K V++ + +E +L ++ +
Sbjct: 63 -----DIPFGITSNSDVFSKYQLDKDGVVLFKKFDEGRNNFEGEVTKENLLDFIKHNQLP 117
Query: 192 DRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKV----DDECDIYGIHMVK 247
IE + + E + + F + + D L + + I
Sbjct: 118 LVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDH 177
Query: 248 IQDPQLAKRYSIKT--FPALVYFRNGN 272
+ ++ + + +K PA+
Sbjct: 178 TDNQRILEFFGLKKEECPAVRLITLEE 204
Score = 34.7 bits (79), Expect = 0.034
Identities = 39/283 (13%), Positives = 84/283 (29%), Gaps = 35/283 (12%)
Query: 29 GIDMVKISDTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTWLTSQDVFEIKNE 88
I S+++ +KY + +++ + +E +L ++ + + E
Sbjct: 63 DIPFGITSNSDVFSKYQLDKDGVVLFKKFDEGRNNFEGEVTKENLLDFI-KHNQLPLVIE 121
Query: 89 IEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGE-TDNMDITFVKMADPR 147
E + E + + F D L + + F+
Sbjct: 122 FTEQTAPKIFG--GEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTD 179
Query: 148 YARKWG-----VTKLPAVVYFR----HRFPSIYRGDLSEE---EEVLQWLITQKTEDR-- 193
R + PAV +L+ E E ++L +
Sbjct: 180 NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMS 239
Query: 194 ------------IELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKV-DDECDI 240
L+ + + +E + + V FY C C Q+ +K+ + D
Sbjct: 240 QELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDH 299
Query: 241 YGIHMVKIQ-DPQLAKRYSIKTFPALVYFRNG---NPLIFEGE 279
I + K+ + + +FP L +F + + GE
Sbjct: 300 ENIVIAKMDSTANEVEAVKVHSFPTLKFFPASADRTVIDYNGE 342
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A
{Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB:
1j08_A
Length = 226
Score = 47.0 bits (111), Expect = 2e-06
Identities = 32/204 (15%), Positives = 70/204 (34%), Gaps = 14/204 (6%)
Query: 88 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM---A 144
+ + + K++ + + VF + + ++ + ++++ TD + V
Sbjct: 8 DKKVIKEEFFSKMVNPVKLI-VFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPE 66
Query: 145 DPRYARKWGVTKLPAVVYFRHR--FPSIYRGDLSEEE-EVLQWLITQKTEDRIELITRVM 201
A+++ + + PA + F Y G + E I + + L+
Sbjct: 67 GKELAKRYRIDRAPATTITQDGKDFGVRYFGLPAGHEFAAFLEDIVDVSREETNLMDETK 126
Query: 202 LETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYG---IHMVKI---QDPQLAK 255
+ + F C C + K E G I + + P+ A
Sbjct: 127 QAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWAD 186
Query: 256 RYSIKTFPALVYFRNGNPLI-FEG 278
+Y++ P +V NG + FEG
Sbjct: 187 QYNVMAVPKIVIQVNGEDRVEFEG 210
Score = 35.1 bits (80), Expect = 0.023
Identities = 29/193 (15%), Positives = 66/193 (34%), Gaps = 12/193 (6%)
Query: 4 NDENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFR--KQVPL 61
+ + C + +++EL + +D E A +Y I P+ + K +
Sbjct: 34 HCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGV 93
Query: 62 LYDGDLFDEE--KILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDH--K 117
Y G E L + E E + ++++ + VF T
Sbjct: 94 RYFGLPAGHEFAAFLEDIVDVSREETNLMDETKQAI---RNIDQDVRILVFVTPTCPYCP 150
Query: 118 DSVKVLERLEKIDGETDNMDITFVK---MADPRYARKWGVTKLPAVVYFRHRFPSIYRGD 174
+V++ + + + I + P +A ++ V +P +V + +
Sbjct: 151 LAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDRVEFEG 210
Query: 175 LSEEEEVLQWLIT 187
E+ L+ L++
Sbjct: 211 AYPEKMFLEKLLS 223
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 46.8 bits (110), Expect = 6e-06
Identities = 24/237 (10%), Positives = 64/237 (27%), Gaps = 23/237 (9%)
Query: 8 CPECDDILEELEHIDGDADQYGIDMVKI---SDTEAAAKYNIINLPSLVYFRK-QVPLLY 63
C + E E + + + K+ ++T KY + P+L FR + Y
Sbjct: 33 CGHAKRLAPEYEAA-ATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGEEAGAY 91
Query: 64 DGDLFDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVL 123
DG + I++ L Q K + + + V F++ ++
Sbjct: 92 DGP-RTADGIVSHLKKQAGPASV---PLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEF 147
Query: 124 ERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFPS-------IYRGDLS 176
+ + F ++ +++ + Y
Sbjct: 148 LKA----ASNLRDNYRFAHTNVESLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKM 203
Query: 177 EEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEK 233
++ +++ + + L + +Y ++ +
Sbjct: 204 TSGKIKKFIQENIFGICPHMTEDNKDLIQ---GKDLLIAYYDVDYEKNAKGSNYWRN 257
Score = 40.2 bits (93), Expect = 7e-04
Identities = 25/201 (12%), Positives = 59/201 (29%), Gaps = 15/201 (7%)
Query: 87 NEIEEVNRRMLDKLLEE---NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM 143
+++ E+ + + + + V F+ + ++ E + K+
Sbjct: 1 SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKG-IVPLAKV 59
Query: 144 ---ADPRYARKWGVTKLPAVVYFRH-RFPSIYRGDLSEEEEVLQWLITQKTEDRIELITR 199
A+ K+GV+ P + FR Y G + ++ L Q + L T
Sbjct: 60 DCTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGP-RTADGIVSHLKKQAGPASVPLRTE 118
Query: 200 VMLETMVEETQYLAVYFYKLNCNICDQILEGL-EKVDDECDIYGIHMVKIQDPQLAKRYS 258
+ + + V F+ + + + D L Y
Sbjct: 119 EEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFA-----HTNVESLVNEYD 173
Query: 259 IKTFPALVYFRNGNPLIFEGE 279
+++ + FE +
Sbjct: 174 DNGEGIILFRPSHLTNKFEDK 194
Score = 35.6 bits (81), Expect = 0.024
Identities = 34/317 (10%), Positives = 86/317 (27%), Gaps = 42/317 (13%)
Query: 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQVP 60
+ +D + L+ ++ + ++ + + II K
Sbjct: 134 GFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLVNEYDDNGEGIILFRPSHLTNKFED 193
Query: 61 --LLYDGDLFDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDH-- 116
+ Y KI ++ + D + ++ + + + +
Sbjct: 194 KTVAYTEQKMTSGKIKKFIQENIF----GICPHMTEDNKDLIQGKDLLIAYYDVDYEKNA 249
Query: 117 KDSVKVLERLEKIDGE-TDNMDITFVKMADP--------RYARKWGVTKLPAVVYFRH-- 165
K S R+ + + D +A + + ++P V
Sbjct: 250 KGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKG 309
Query: 166 -----------------RFPSIYRGDLSEEEEVLQWLITQKTEDRIELITRVMLETMVEE 208
RF Y + + + ++ E + E
Sbjct: 310 EKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNE 369
Query: 209 TQYLAVYFYKLNCNICDQILEGLEKV-DDECDIYGIHMVKI--QDPQLAKRYSIKTFPAL 265
+ + + FY C C + +++ + I + K+ + Y ++ FP +
Sbjct: 370 NKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVPSPYEVRGFPTI 429
Query: 266 VYFRNG---NPLIFEGE 279
+ NP +EG
Sbjct: 430 YFSPANKKLNPKKYEGG 446
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 46.1 bits (108), Expect = 1e-05
Identities = 21/212 (9%), Positives = 58/212 (27%), Gaps = 12/212 (5%)
Query: 16 EELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILT 75
+++ + +D + +++ ++NI P++ +F+ L +
Sbjct: 57 NDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQ 116
Query: 76 WLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVL----------ER 125
L + + +++ + LE + + + T +K L
Sbjct: 117 TLRMRLIDALESHRD--TWPPACPPLEPAKLNDIDGFFTRNKADYLALVFEREDSYLGRE 174
Query: 126 LEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWL 185
+ + + + V + K+GVT P+ L E
Sbjct: 175 VTLDLSQYHAVAVRRVLNTESDLVNKFGVTDFPSCYLLLRNGSVSRVPVLVESRSFYTSY 234
Query: 186 ITQKTEDRIELITRVMLETMVEETQYLAVYFY 217
+ + ++ F
Sbjct: 235 LRGLPGLTRDAPPTTATPVTADKIAPTVWKFA 266
Score = 28.4 bits (62), Expect = 4.1
Identities = 6/41 (14%), Positives = 16/41 (39%), Gaps = 9/41 (21%)
Query: 233 KVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNP 273
+D C + + + + ++I FP + +F+
Sbjct: 70 VLD--CA-------EETNSAVCREFNIAGFPTVRFFQAFTK 101
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
thioredoxin fold, oxidoreductase, reductive methylation;
HET: MLY; 2.05A {Homo sapiens}
Length = 244
Score = 43.8 bits (103), Expect = 3e-05
Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 210 QYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALV-YF 268
+YLA+ F + ++ L + + V + + +++ + FP+ F
Sbjct: 158 EYLALIFEXGGSYLAREVALDLSQHKGV----AVRRVLNTEANVVRKFGVTDFPSCYLLF 213
Query: 269 RNGNP 273
RNG+
Sbjct: 214 RNGSV 218
Score = 38.8 bits (90), Expect = 0.001
Identities = 26/183 (14%), Positives = 58/183 (31%), Gaps = 17/183 (9%)
Query: 16 EELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQ----VPLLYDGDLFDEE 71
E+++ +D + +++ +NI P++ +F ++ D +
Sbjct: 57 EDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQ 116
Query: 72 KILTWLTSQDVFEIKNE------IEEVNRRMLDKLLEEN--EFVTVFFYETDHKDSVKVL 123
+ L +E +D N E++ + F + +V
Sbjct: 117 TLRERLIDALESHHDTWPPACPPLEPAXLEEIDGFFARNNEEYLALIFEXGGSYLAREVA 176
Query: 124 ERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVV-YFRHRFPSIYRGDLSEEEEVL 182
L + + + V + RK+GVT P+ FR+ S +
Sbjct: 177 LDLSQ----HKGVAVRRVLNTEANVVRKFGVTDFPSCYLLFRNGSVSRVPVLMESRSFYT 232
Query: 183 QWL 185
+L
Sbjct: 233 AYL 235
Score = 28.8 bits (64), Expect = 2.4
Identities = 10/76 (13%), Positives = 21/76 (27%), Gaps = 5/76 (6%)
Query: 6 ENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLV-YFRKQVPLLYD 64
++ +L G A + V ++ K+ + + PS FR
Sbjct: 167 GGSYLAREVALDLSQHKGVA----VRRVLNTEANVVRKFGVTDFPSCYLLFRNGSVSRVP 222
Query: 65 GDLFDEEKILTWLTSQ 80
+ +L
Sbjct: 223 VLMESRSFYTAYLQRL 238
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP:
c.47.1.1
Length = 118
Score = 40.0 bits (93), Expect = 2e-04
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 6/90 (6%)
Query: 188 QKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECD--IYGIHM 245
+E+ T V + +++ + + + C C + L V E IY I+
Sbjct: 8 LDNIKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINS 67
Query: 246 VKIQDPQ----LAKRYSIKTFPALVYFRNG 271
+ RY I T P V+ +G
Sbjct: 68 EEPSQLNDLQAFRSRYGIPTVPGFVHITDG 97
Score = 30.3 bits (68), Expect = 0.33
Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 6/83 (7%)
Query: 1 MYINDENCPECDDILEELEHIDGDADQ--YGIDMVKISDTEAAA----KYNIINLPSLVY 54
+I + CP C L + + Y I+ + S +Y I +P V+
Sbjct: 34 FFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVH 93
Query: 55 FRKQVPLLYDGDLFDEEKILTWL 77
+ ++I +
Sbjct: 94 ITDGQINVRCDSSMSAQEIKDFA 116
Score = 27.6 bits (61), Expect = 2.5
Identities = 16/115 (13%), Positives = 37/115 (32%), Gaps = 8/115 (6%)
Query: 78 TSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMD 137
+ + ++E + L++ E T F K L + ET
Sbjct: 3 AMEQFLDNIKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAET-KAH 61
Query: 138 ITFVKMADPR-------YARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWL 185
I F+ +P + ++G+ +P V+ ++ +E+ +
Sbjct: 62 IYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKDFA 116
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 39.8 bits (93), Expect = 3e-04
Identities = 9/95 (9%), Positives = 30/95 (31%), Gaps = 5/95 (5%)
Query: 185 LITQKTEDRIELITRVMLETMVEETQY--LAVYFYKLNCNICDQILEGLEKVDDECDIYG 242
L + + + ++ ++ + + + ++ E +
Sbjct: 10 LWQRLLTRGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFD 69
Query: 243 IHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPL 274
+ Q + R++++ FPA + F +G
Sbjct: 70 WQVAVADLEQSEAIGDRFNVRRFPATLVFTDGKLR 104
Score = 35.9 bits (83), Expect = 0.005
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 8 CPECDDILEELEHIDGDADQYGIDMVKISDTEA----AAKYNIINLPSLVYFR 56
PE D + + + Q+ + D E ++N+ P+ + F
Sbjct: 48 TPEVSDNPVMIAELLREFPQFDWQVAVA-DLEQSEAIGDRFNVRRFPATLVFT 99
Score = 31.7 bits (72), Expect = 0.16
Identities = 6/42 (14%), Positives = 13/42 (30%), Gaps = 3/42 (7%)
Query: 126 LEKIDGETDNMDITFVKM---ADPRYARKWGVTKLPAVVYFR 164
+ ++ E D ++ V + PA + F
Sbjct: 58 IAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFT 99
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 39.4 bits (92), Expect = 3e-04
Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 214 VYFYKLNCNICDQILEGLEKVDDECDIYG-IHMVKIQDPQLAKRYSIKTFPALVYFRNGN 272
++ Y+ + +C + + L + + + VK + Y P + ++NG
Sbjct: 35 IHLYRSSVPMCLVVNQHLSVLARK---FPETKFVKAIVNSCIEHYHDNCLPTIFVYKNGQ 91
Query: 273 P 273
Sbjct: 92 I 92
Score = 36.0 bits (83), Expect = 0.004
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 19/98 (19%)
Query: 5 DENCPEC---DDILEELEHIDGDADQYG-IDMVKISDTEAAAKYNIINLPSLVYFRKQVP 60
+ P C + L L A ++ VK Y+ LP++ ++
Sbjct: 39 RSSVPMCLVVNQHLSVL------ARKFPETKFVKAIVNSCIEHYHDNCLPTIFVYKNGQI 92
Query: 61 LLY-------DGDLFDEEKILTWLTSQDVFEIKNEIEE 91
G E++ L+ I++++EE
Sbjct: 93 EGKFIGIIECGGINLKLEELEWKLSEVGA--IQSDLEE 128
Score = 34.1 bits (78), Expect = 0.019
Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 10/86 (11%)
Query: 81 DVFEI--KNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDI 138
++ EI + EV E++ +V + Y + + V + L + + +
Sbjct: 11 ELREISGNQYVNEVTNA------EKDLWVVIHLYRSSVPMCLVVNQHLSVLARK--FPET 62
Query: 139 TFVKMADPRYARKWGVTKLPAVVYFR 164
FVK + LP + ++
Sbjct: 63 KFVKAIVNSCIEHYHDNCLPTIFVYK 88
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 38.2 bits (89), Expect = 6e-04
Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 214 VYFYKLNCNICDQILEGLEKVDDECDIYG-IHMVKIQDPQLAKRYSIKTFPALVYFRNGN 272
++ Y+ + +C + + L + + + VK + Y P + ++NG
Sbjct: 28 IHLYRSSIPMCLLVNQHLSLLARK---FPETKFVKAIVNSCIQHYHDNCLPTIFVYKNGQ 84
Query: 273 P 273
Sbjct: 85 I 85
Score = 33.6 bits (77), Expect = 0.026
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 10/57 (17%)
Query: 5 DENCPEC---DDILEELEHIDGDADQYG-IDMVKISDTEAAAKYNIINLPSLVYFRK 57
+ P C + L L A ++ VK Y+ LP++ ++
Sbjct: 32 RSSIPMCLLVNQHLSLL------ARKFPETKFVKAIVNSCIQHYHDNCLPTIFVYKN 82
Score = 32.4 bits (74), Expect = 0.066
Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 10/86 (11%)
Query: 81 DVFEI--KNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDI 138
++ EI + EV EE+ +V + Y + + V + L + + +
Sbjct: 4 ELREISGNQYVNEVTNA------EEDVWVIIHLYRSSIPMCLLVNQHLSLLARK--FPET 55
Query: 139 TFVKMADPRYARKWGVTKLPAVVYFR 164
FVK + + LP + ++
Sbjct: 56 KFVKAIVNSCIQHYHDNCLPTIFVYK 81
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP:
c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 38.7 bits (89), Expect = 0.002
Identities = 34/273 (12%), Positives = 78/273 (28%), Gaps = 21/273 (7%)
Query: 8 CPECDDILEELEHIDGDADQYGIDMVKI---SDTEAAAKYNIINLPSLVYFR---KQVPL 61
C C ++ E + I + +I + + ++NI PSL F+ +
Sbjct: 43 CGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSI 102
Query: 62 LYDGDLFDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVK 121
Y+G E I+ ++ Q + + V V + D +
Sbjct: 103 DYEGP-RTAEAIVQFMIKQSQPAVA---VVADLPAYLANETFVTPVIVQSGKIDADFNAT 158
Query: 122 VLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEV 181
K + D + P V + D+++ +
Sbjct: 159 FYSMANKHFNDYDFVSAENADDDFKLSIYLPSAMDEPVVYNG-------KKADIADADVF 211
Query: 182 LQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKV--DDECD 239
+W + + I + VE L FY + ++ ++ +
Sbjct: 212 EKW-LQVEALPYFGEIDGSVFAQYVESGLPLGYLFYN-DEEELEEYKPLFTELAKKNRGL 269
Query: 240 IYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGN 272
+ + + + + A ++K L +
Sbjct: 270 MNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMT 302
Score = 38.3 bits (88), Expect = 0.003
Identities = 13/88 (14%), Positives = 31/88 (35%), Gaps = 3/88 (3%)
Query: 189 KTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248
+ + + ++ + F+ C C + K + I + +I
Sbjct: 11 PEDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQI 70
Query: 249 ---QDPQLAKRYSIKTFPALVYFRNGNP 273
++ L ++I FP+L F+N +
Sbjct: 71 DCTENQDLCMEHNIPGFPSLKIFKNSDV 98
Score = 29.4 bits (65), Expect = 2.1
Identities = 36/309 (11%), Positives = 91/309 (29%), Gaps = 47/309 (15%)
Query: 12 DDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEE 71
+ A+++ D +S A + + V D+ D +
Sbjct: 150 KIDADFNATFYSMANKHFNDYDFVSAENADDDFKLSIYLPSAMDEPVVYNGKKADIADAD 209
Query: 72 KILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDG 131
WL E E++ + + +E + FY + ++ + ++
Sbjct: 210 VFEKWLQV----EALPYFGEIDGSVFAQYVESGLPLGYLFYNDE-EELEEYKPLFTEL-A 263
Query: 132 ETDNMDITFVKM---ADPRYARKWGVT-KLPAVVYFRHRFPSIYRGDLSEEEEVL----- 182
+ + + FV + R+A + + P Y EE
Sbjct: 264 KKNRGLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDK 323
Query: 183 --------------------------QWLITQKTEDRIELITRVMLETMVEETQYLAVYF 216
Q + + +L+ + E + + + + V +
Sbjct: 324 IVLESKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLY 383
Query: 217 YKLNCNICDQILEGLEKVDDE--CDIYGIHMVKIQ-DPQLAKRYSIKTFPALVYFRNG-- 271
Y C C ++ +++ D + + K+ + I+ +P +V + G
Sbjct: 384 YAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIEGYPTIVLYPGGKK 443
Query: 272 -NPLIFEGE 279
++++G
Sbjct: 444 SESVVYQGS 452
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 37.7 bits (87), Expect = 0.003
Identities = 12/69 (17%), Positives = 26/69 (37%)
Query: 204 TMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFP 263
++ + V+ Y+ CD + L + E + +K + R+S P
Sbjct: 128 EKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKASNTGAGDRFSSDVLP 187
Query: 264 ALVYFRNGN 272
L+ ++ G
Sbjct: 188 TLLVYKGGE 196
Score = 30.4 bits (68), Expect = 0.79
Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 13/69 (18%)
Query: 5 DENCPECDDILEELEHIDGDADQYG-IDMVKI--SDTEAAAKYNIINLPSLVYFRKQVPL 61
++ CD + L + A +Y + KI S+T A +++ LP+L+ ++
Sbjct: 142 EDGIKGCDALNSSLICL---AAEYPMVKFCKIKASNTGAGDRFSSDVLPTLLVYK----- 193
Query: 62 LYDGDLFDE 70
G+L
Sbjct: 194 --GGELLSN 200
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 36.1 bits (84), Expect = 0.003
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 11/47 (23%)
Query: 233 KVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPLIFEGE 279
KVD + P L+ R+ I P + + ++G ++G
Sbjct: 60 KVD--VT---------EQPGLSGRFIINALPTIYHCKDGEFRRYQGP 95
Score = 28.0 bits (63), Expect = 2.1
Identities = 5/44 (11%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 37 DTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTWLTSQ 80
+ ++ I LP++ + + Y G ++ + +++ +
Sbjct: 66 QPGLSGRFIINALPTIYHCKDGEFRRYQGPR-TKKDFINFISDK 108
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.004
Identities = 50/344 (14%), Positives = 88/344 (25%), Gaps = 155/344 (45%)
Query: 1 M----YINDENCPECDDILEELEHIDGDADQ-----YGIDMVKISDTEAAAKYNIINLPS 51
M Y + D+ AD YG ++ I +IN P
Sbjct: 1631 MGMDLY---KTSKAAQDVWNR-------ADNHFKDTYGFSILDI----------VINNPV 1670
Query: 52 LVYFRKQVPLLYDGDLFDEEKILTWLTSQDVFEIKNEIEEVNRRML-DKLLEENEFVTVF 110
+ F EK + I E M+ + +++
Sbjct: 1671 NLTI-----------HFGGEK------GK-------RIRENYSAMIFETIVDGKLKTEKI 1706
Query: 111 FYETDHKDSVKVLERLEKI--DGETDNMDIT-F-------VKMADPRYARKWGVTKLPAV 160
F E + E E + T F ++ A + G+ A
Sbjct: 1707 FKEIN--------EHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADAT 1758
Query: 161 V-------Y---------FRHRFPSI--------YRGDLSEE------------------ 178
Y SI YRG +
Sbjct: 1759 FAGHSLGEYAALASLADVM-----SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN 1813
Query: 179 ---------EEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICD-QI- 227
+E LQ+++ +R+ T ++E V N N+ + Q
Sbjct: 1814 PGRVAASFSQEALQYVV-----ERVGKRTGWLVE---------IV-----NYNVENQQYV 1854
Query: 228 ----LEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVY 267
L L+ V + + + KI +L K S++ ++
Sbjct: 1855 AAGDLRALDTVTNVLNFIKLQ--KIDIIELQKSLSLEEVEGHLF 1896
Score = 29.6 bits (66), Expect = 1.9
Identities = 14/83 (16%), Positives = 23/83 (27%), Gaps = 32/83 (38%)
Query: 236 DECD-----IYGIHMVKI--QDP-------------QLAKRYSIKTF--------PALVY 267
+ D YG ++ I +P ++ + YS F
Sbjct: 1647 NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI 1706
Query: 268 FRNGNP----LIFEGENKILKGT 286
F+ N F E +L T
Sbjct: 1707 FKEINEHSTSYTFRSEKGLLSAT 1729
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 37.5 bits (87), Expect = 0.004
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 214 VYFYKLNCNICDQILEGLEKVDDECDIYG--IHMVKI---QDPQLAKRYSIKTFPALVYF 268
YF+ C Q+ LE + + Y + K+ + +A ++ ++ P + F
Sbjct: 31 FYFWSERSQHCLQLTPILESLAAQ---YNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLF 87
Query: 269 RNGNPL-IFEG 278
+NG P+ F+G
Sbjct: 88 QNGQPVDGFQG 98
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 35.4 bits (82), Expect = 0.005
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 221 CNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPL 274
C C + + L+K + + + P+L K + P LV+ R+G
Sbjct: 31 CPHCKNMEKVLDKFGARAP--QVAISSVDSEARPELMKELGFERVPTLVFIRDGKVA 85
Score = 27.3 bits (61), Expect = 3.3
Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 12/48 (25%)
Query: 14 ILEELEHIDGDADQY-GIDMVKISDTEA----AAKYNIINLPSLVYFR 56
+L++ + + + + D+EA + +P+LV+ R
Sbjct: 40 VLDKF------GARAPQVAISSV-DSEARPELMKELGFERVPTLVFIR 80
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 140
Score = 35.8 bits (83), Expect = 0.005
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 243 IHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPLIFEGE 279
I + KI LA ++ + +P + + G + ++G
Sbjct: 70 IAVAKIDATSASMLASKFDVSGYPTIKILKKGQAVDYDGS 109
Score = 28.5 bits (64), Expect = 2.0
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 10/57 (17%)
Query: 24 DADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTWLTSQ 80
DA + A+K+++ P++ +K + YDG +E+I+ +
Sbjct: 76 DATSA---------SMLASKFDVSGYPTIKILKKGQAVDYDGS-RTQEEIVAKVREV 122
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; 2.70A
{Shigella flexneri 2A} PDB: 2hfd_A
Length = 140
Score = 35.0 bits (80), Expect = 0.012
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 6 ENCPECDD---ILEELEH-IDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQVPL 61
+ PE D ++ EL H Q I ++ S+ ++ P+ + F
Sbjct: 46 KRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSE-AIGDRFGAFRFPATLVFTGGNYR 104
Score = 34.2 bits (78), Expect = 0.019
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 249 QDPQLAKRYSIKTFPALVYFRNGNPL 274
Q + R+ FPA + F GN
Sbjct: 79 QSEAIGDRFGAFRFPATLVFTGGNYR 104
Score = 27.7 bits (61), Expect = 3.3
Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 7/74 (9%)
Query: 97 LDKLLEENEFVTVFFYETDHK-----DSVKVLERLEKIDGETDNMDITFVKMADPR-YAR 150
LD L + V + D+ ++ L + + +
Sbjct: 27 LDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLH-EFPDYTWQVAIADLEQSEAIGD 85
Query: 151 KWGVTKLPAVVYFR 164
++G + PA + F
Sbjct: 86 RFGAFRFPATLVFT 99
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 34.8 bits (80), Expect = 0.016
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 8/59 (13%)
Query: 221 CNICDQILEGLEKVDDECDIYG--IHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPL 274
C C Q+ + + + KI P +A R+ I+ PA + F G L
Sbjct: 76 CGPCRQMAPQFQAAAAT---LAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILFHKGREL 131
Score = 28.2 bits (63), Expect = 2.8
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 10/56 (17%)
Query: 8 CPECDDILEELEHIDGDADQYG--IDMVKISDTEA----AAKYNIINLPSLVYFRK 57
C C + + + A + + KI DT+A A ++ I +P+ + F K
Sbjct: 76 CGPCRQMAPQFQAA---AATLAGQVRLAKI-DTQAHPAVAGRHRIQGIPAFILFHK 127
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 34.4 bits (79), Expect = 0.017
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 9/69 (13%)
Query: 214 VYFYKLNCNICDQILEGLEKVDDECDI------YGIHMVKI---QDPQLAKRYSIKTFPA 264
+ Y C C + L + E D+ +G + + + ++ P
Sbjct: 36 LAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGVEGTPT 95
Query: 265 LVYFRNGNP 273
LV+++ G
Sbjct: 96 LVFYKEGRI 104
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD,
structural genomics, protein structure initiative; 1.80A
{Rhodopseudomonas palustris}
Length = 137
Score = 33.9 bits (77), Expect = 0.023
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 249 QDPQLAKRYSIKTFPALVYFRNGNPL 274
+ L R+ + P+L + L
Sbjct: 77 AERGLMARFGVAVCPSLAVVQPERTL 102
Score = 33.5 bits (76), Expect = 0.036
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 10/61 (16%)
Query: 7 NCPECDD---ILEELEHIDGDADQYGIDMVKISDTEA---AAKYNIINLPSLVYFRKQVP 60
PE D +L EL + A + +++ A++ + PSL + +
Sbjct: 46 RFPEAADLAVVLPELIN----AFPGRLVAAEVAAEAERGLMARFGVAVCPSLAVVQPERT 101
Query: 61 L 61
L
Sbjct: 102 L 102
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens}
PDB: 1xbs_A
Length = 149
Score = 33.8 bits (77), Expect = 0.028
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
Query: 205 MVEETQYLAVYFYKLNCNICDQILEGLEK----VDDECDIYGIHMVKI-QDPQLAKRYSI 259
+ L + F + +C Q+ + L K + IY +V + Q + + I
Sbjct: 19 KSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIY---LVDVDQTAVYTQYFDI 75
Query: 260 KTFPALVYFRNGNPL 274
P+ V+F NG +
Sbjct: 76 SYIPSTVFFFNGQHM 90
Score = 32.6 bits (74), Expect = 0.090
Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 7/118 (5%)
Query: 6 ENCPEC---DDILEEL-EHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQVPL 61
+ P C DDIL + + A Y +D+ + + ++I +PS V+F +
Sbjct: 33 DEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVY--TQYFDISYIPSTVFFFNGQHM 90
Query: 62 LYDGDLFDEEKILTWL-TSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKD 118
D D K + T QD ++ I R + + + Y+ ++D
Sbjct: 91 KVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAMRGKLIVQSPIDPKNIPKYDLLYQD 148
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 34.2 bits (78), Expect = 0.039
Identities = 12/69 (17%), Positives = 26/69 (37%)
Query: 204 TMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFP 263
++ + V Y+ CD + LE + E + ++ + R+S P
Sbjct: 115 EKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTGAGDRFSSDVLP 174
Query: 264 ALVYFRNGN 272
L+ ++ G
Sbjct: 175 TLLVYKGGE 183
Score = 29.6 bits (66), Expect = 1.2
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 13/71 (18%)
Query: 2 YINDENCPECDDILEELEHIDGDADQYG-IDMVKI--SDTEAAAKYNIINLPSLVYFRKQ 58
I ++ CD + LE + A +Y + KI S+T A +++ LP+L+ ++
Sbjct: 126 NIYEDGVRGCDALNSSLECL---AAEYPMVKFCKIRASNTGAGDRFSSDVLPTLLVYK-- 180
Query: 59 VPLLYDGDLFD 69
G+L
Sbjct: 181 -----GGELIS 186
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.82A {Thermus
thermophilus}
Length = 140
Score = 32.8 bits (75), Expect = 0.056
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 221 CNICDQILEGLEKVDDECDIYG--IHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273
C C + LE++ + + + +VK+ + P LA RY +++ P LV FR G P
Sbjct: 62 CGPCRLVSPILEELARD---HAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRRGAP 116
Score = 27.0 bits (60), Expect = 6.5
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 13/49 (26%)
Query: 14 ILEELEHIDGDADQYG--IDMVKISDTEA----AAKYNIINLPSLVYFR 56
ILEEL A + + +VK+ + + AA+Y + ++P+LV FR
Sbjct: 71 ILEEL------ARDHAGRLKVVKV-NVDEHPGLAARYGVRSVPTLVLFR 112
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion,
electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB:
1uvz_A 1w89_A
Length = 119
Score = 32.3 bits (74), Expect = 0.061
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 221 CNICDQILEGLEKVDDECDIYG--IHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273
C C + LEK+ + + M K+ LA Y + P ++ +NG+
Sbjct: 43 CGPCKILGPRLEKMVAK---QHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDV 97
Score = 26.5 bits (59), Expect = 6.6
Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 11/48 (22%)
Query: 14 ILEELEHIDGDADQYG--IDMVKI---SDTEAAAKYNIINLPSLVYFR 56
LE++ + + M K+ T+ A +Y + +P+++ +
Sbjct: 52 RLEKM------VAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMK 93
>1ilo_A Conserved hypothetical protein MTH895;
beta-alpha-beta-alpha-beta-BETA-alpha motif, structural
genomics, PSI; NMR
{Methanothermobacterthermautotrophicus str} SCOP:
c.47.1.1
Length = 77
Score = 31.2 bits (71), Expect = 0.070
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 8 CPECDDILEELEHIDGDADQYGID--MVKISDTEAAAKYNIINLPSLVYFRKQVPLLYDG 65
C C + + + GID KI + + + + LP L + L G
Sbjct: 11 CANCQMLEKNAREA---VKELGIDAEFEKIKEMDQILEAGLTALPGLAVDGE---LKIMG 64
Query: 66 DLFDEEKILTWLT 78
+ +E+I L+
Sbjct: 65 RVASKEEIKKILS 77
Score = 26.9 bits (60), Expect = 2.6
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 221 CNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALV 266
C C + + + E I KI++ + P L
Sbjct: 11 CANCQMLEKNAREAVKELGI-DAEFEKIKEMDQILEAGLTALPGLA 55
Score = 25.8 bits (57), Expect = 7.0
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 13/56 (23%)
Query: 135 NMDITFVKMADPRYARKWGVTKLPAVVY-----FRHRFPSIYRGDLSEEEEVLQWL 185
+D F K+ + + G+T LP + R S +EE+ + L
Sbjct: 29 GIDAEFEKIKEMDQILEAGLTALPGLAVDGELKIMGRVAS--------KEEIKKIL 76
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.99A {Desulfitobacterium hafniense dcb-2}
Length = 111
Score = 31.5 bits (72), Expect = 0.10
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 214 VYFYKLNCNICDQILEGLEKVDDECDIYG--IHMVKI---QDPQLAKRYSIKTFPALVYF 268
V F + NC++C ++ LE++ Y + ++ L +R+S+K P ++YF
Sbjct: 27 VMFSRKNCHVCQKVTPVLEELRLN---YEESFGFYYVDVEEEKTLFQRFSLKGVPQILYF 83
Query: 269 RNGNP 273
++G
Sbjct: 84 KDGEY 88
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 31.9 bits (73), Expect = 0.11
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 11/41 (26%)
Query: 233 KVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNP 273
KVD C PQ ++ IK +P++ ++
Sbjct: 58 KVD--CQ---------AYPQTCQKAGIKAYPSVKLYQYERA 87
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.19A {Yersinia pestis}
Length = 148
Score = 32.0 bits (73), Expect = 0.11
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 221 CNICDQILEGLEKVDDECDIYG--IHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273
C C + E + VK+ +P L+ R+ I++ P ++ +RNG
Sbjct: 67 CGPCRSFAPIFAETAAE---RAGKVRFVKVNTEAEPALSTRFRIRSIPTIMLYRNGKM 121
Score = 27.8 bits (62), Expect = 2.8
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 16/61 (26%)
Query: 6 ENCPECDDI---LEELEHIDGDADQYG--IDMVKISDTEA----AAKYNIINLPSLVYFR 56
C C E A + + VK+ +TEA + ++ I ++P+++ +R
Sbjct: 65 PWCGPCRSFAPIFAET------AAERAGKVRFVKV-NTEAEPALSTRFRIRSIPTIMLYR 117
Query: 57 K 57
Sbjct: 118 N 118
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 31.6 bits (72), Expect = 0.15
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 11/45 (24%)
Query: 233 KVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPLIFE 277
V+ D + L +Y ++ FP + F +
Sbjct: 72 AVN--AD---------KHQSLGGQYGVQGFPTIKIFGANKNKPED 105
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 31.1 bits (71), Expect = 0.15
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 11/41 (26%)
Query: 233 KVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNP 273
KVD ++ LA++Y ++ +P + +FRNG+
Sbjct: 64 KVD--AT---------EESDLAQQYGVRGYPTIKFFRNGDT 93
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 31.2 bits (71), Expect = 0.19
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 11/40 (27%)
Query: 233 KVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGN 272
VD + LA RY I+ FP + F+ G
Sbjct: 66 AVD--AT---------VNQVLASRYGIRGFPTIKIFQKGE 94
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Length = 100
Score = 30.8 bits (70), Expect = 0.19
Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 23/81 (28%)
Query: 6 ENCPECDDILEELEHIDGDADQYGIDMVKI---SDTEAAAKYNIINLPSLVYFRKQVP-L 61
CP CD+ E L+ D++ + V I ++ +Y +P
Sbjct: 25 APCPLCDEAKEVLQPY---KDRFILQEVDITLPENSTWYERYKF-----------DIPVF 70
Query: 62 LYDGDL-----FDEEKILTWL 77
+G + K+ L
Sbjct: 71 HLNGQFLMMHRVNTSKLEKQL 91
Score = 29.7 bits (67), Expect = 0.37
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 216 FYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRY 257
F K C +CD+ E L+ D + + V I ++ +RY
Sbjct: 22 FTKAPCPLCDEAKEVLQPYKDR---FILQEVDITLPENSTWYERY 63
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium
falciparum}
Length = 128
Score = 31.2 bits (71), Expect = 0.21
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 214 VYFYKLNCNICDQILEGLEKVDDECDIYG--IHMVKI---QDPQLAKRYSIKTFPALVYF 268
+YF+ C C ++K+ YG I+++K+ ++ LA+++S+K+ P ++
Sbjct: 47 LYFFAKWCQACTMQSTEMDKLQKY---YGKRIYLLKVDLDKNESLARKFSVKSLPTIILL 103
Query: 269 RNGNPL 274
+N L
Sbjct: 104 KNKTML 109
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport,
redox- active center, transport, oxidoreductase; HET:
CME; 1.50A {Saccharomyces cerevisiae}
Length = 112
Score = 30.8 bits (70), Expect = 0.22
Identities = 10/64 (15%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 214 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRN 270
+YF+ C + + E + +E + + I ++ ++++ + I P +
Sbjct: 26 LYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYFIIIHK 85
Query: 271 GNPL 274
G L
Sbjct: 86 GTIL 89
Score = 28.5 bits (64), Expect = 1.5
Identities = 6/42 (14%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 126 LEKIDGETDNMDITFVKM---ADPRYARKWGVTKLPAVVYFR 164
E I E N +++F+ + + + + ++ +P +
Sbjct: 43 FEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYFIIIH 84
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A
{Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A
2l59_A
Length = 121
Score = 30.8 bits (70), Expect = 0.22
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 221 CNICDQILEGLEKVDDECDIYG--IHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273
C C + LE++ E + + K+ +P+ A+ + + + P L+ F++G P
Sbjct: 42 CGPCKMVAPVLEEIATE---RATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQP 96
Score = 26.2 bits (58), Expect = 8.4
Identities = 10/48 (20%), Positives = 26/48 (54%), Gaps = 11/48 (22%)
Query: 14 ILEELEHIDGDADQYG--IDMVKI---SDTEAAAKYNIINLPSLVYFR 56
+LEE+ A + + + K+ ++ E A + ++++P+L+ F+
Sbjct: 51 VLEEI------ATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFK 92
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A
{Escherichia coli}
Length = 128
Score = 30.8 bits (70), Expect = 0.24
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 221 CNICDQILEGLEKVDDECDIYG--IHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273
C I L+++ DE Y + + K+ Q+P A +Y I+ P L+ F+NG
Sbjct: 52 CGPAKMIAPILDEIADE---YQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEV 106
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB:
3hhv_A
Length = 104
Score = 30.4 bits (69), Expect = 0.24
Identities = 12/56 (21%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 221 CNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273
C C + +E++ ++ + K+ ++P +A RY + + P +++F++G P
Sbjct: 28 CAPCLILAPIIEELAEDYP--QVGFGKLNSDENPDIAARYGVMSLPTVIFFKDGEP 81
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 32.3 bits (72), Expect = 0.26
Identities = 12/88 (13%), Positives = 25/88 (28%)
Query: 249 QDPQLAKRYSIKTFPALVYFRNGNPLIFEGENKILKGTYIGTYISTKAFSLIPFCFSEKH 308
+ L ++Y I P L +F + E ++ S +
Sbjct: 92 SEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVDELESEVRRLV 151
Query: 309 PGAFQTELVLRSLKIKIIGKCEDGVQKL 336
+ L+ I + K ++L
Sbjct: 152 NKHMVVDDSLKERCIDMHFKLYTSKEEL 179
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A
{Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB:
1rqm_A 1quw_A 1nw2_A
Length = 105
Score = 30.3 bits (69), Expect = 0.29
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 221 CNICDQILEGLEKVDDECDIYG--IHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273
C C + LE+ + + + + K+ ++P+ ++ I + P L+ F+ G P
Sbjct: 29 CGPCRMMAPVLEEFAEA---HADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGRP 83
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule,
electron transport; 1.51A {Streptomyces coelicolor}
Length = 112
Score = 30.4 bits (69), Expect = 0.29
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 221 CNICDQILEGLEKVDDECDIYG--IHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273
C C QI LE + E YG I +VK+ ++P A +Y + + P L ++ G
Sbjct: 35 CGPCRQIAPSLEAIAAE---YGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVYQGGEV 89
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 30.3 bits (69), Expect = 0.32
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 11/41 (26%)
Query: 233 KVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNP 273
+VD C + + +YS++ +P L+ FR G
Sbjct: 61 EVD--CT---------AERNICSKYSVRGYPTLLLFRGGKK 90
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A
{Aeropyrum pernix}
Length = 243
Score = 31.3 bits (70), Expect = 0.34
Identities = 29/208 (13%), Positives = 71/208 (34%), Gaps = 25/208 (12%)
Query: 84 EIKNEIEEVNRRMLDKLLEENEFVTVFFYETDH----KDSVKVLERLEKIDGETDNMDIT 139
+ + E+ E L ++ N F +D++++++ E+ + +
Sbjct: 12 DFRRELRET----LAEM--VNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLL 65
Query: 140 FVKM----ADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEE-EVLQWLITQKTEDRI 194
+ + +D ++ V ++P V + + G + EE L +I + +ED
Sbjct: 66 KLNVYYRESDSDKFSEFKVERVPTVAFLGGE--VRWTGIPAGEEIRALVEVIMRLSEDES 123
Query: 195 ELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDE------CDIYGIHMVKI 248
L + + +C C + E I +
Sbjct: 124 GLEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAY 183
Query: 249 QDPQLAKRYSIKTFPALVYFRNGNPLIF 276
++P +A +Y + + P++ NG +
Sbjct: 184 ENPDIADKYGVMSVPSIAI--NGYLVFV 209
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural
genomics, PSI, protein structure initiative; NMR
{Nitrosomonas europaea}
Length = 107
Score = 30.1 bits (68), Expect = 0.35
Identities = 9/62 (14%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 216 FYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQLAKRYSIKTFPALVYFRNGNPL 274
+ + C++C++++ L + + + ++ I + L + Y+ + P L L
Sbjct: 35 YGREGCHLCEEMIASLRVLQKKSWF-ELEVINIDGNEHLTRLYNDRV-PVLFAVNEDKEL 92
Query: 275 IF 276
Sbjct: 93 CH 94
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP:
c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B*
1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B*
1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T*
2h6x_A ...
Length = 108
Score = 29.9 bits (68), Expect = 0.36
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 221 CNICDQILEGLEKVDDECDIYG--IHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273
C C I L+++ DE Y + + K+ Q+P A +Y I+ P L+ F+NG
Sbjct: 32 CGPCKMIAPILDEIADE---YQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEV 86
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport;
1.60A {Nostoc SP} SCOP: c.47.1.1
Length = 115
Score = 30.0 bits (68), Expect = 0.37
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 8/58 (13%)
Query: 221 CNICDQILEGLEKVDDECDIYG--IHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273
C C + + + Y + +VK+ +P K+Y ++ PAL +
Sbjct: 37 CGPCQLMSPLINLAANT---YSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLVKGEQI 91
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP:
c.47.1.1
Length = 124
Score = 30.1 bits (68), Expect = 0.38
Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 27/76 (35%)
Query: 201 MLETMVEE--TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYS 258
+ E+ +YL V F KL+ + E LAK
Sbjct: 54 AMAPKYEKLAEEYLDVIFLKLD-------------CNQEN------------KTLAKELG 88
Query: 259 IKTFPALVYFRNGNPL 274
I+ P + + +
Sbjct: 89 IRVVPTFKILKENSVV 104
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A
{Acetobacter aceti}
Length = 107
Score = 29.9 bits (68), Expect = 0.39
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 221 CNICDQILEGLEKVDDECDIYG--IHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273
C C I L ++ E + + + K+ +P+ Y +++ P L+ R+G
Sbjct: 32 CGPCKMIGPALGEIGKE---FAGKVTVAKVNIDDNPETPNAYQVRSIPTLMLVRDGKV 86
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport,
redox-active center; 1.50A {Bacillus subtilis} PDB:
2ipa_A 2gzy_A 2gzz_A
Length = 112
Score = 29.9 bits (68), Expect = 0.40
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 221 CNICDQILEGLEKVDDECDIYG--IHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273
C I LE++D E G + +VKI ++ + A +Y + + P L+ ++G
Sbjct: 29 CGPSKMIAPVLEELDQE---MGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEV 83
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 30.0 bits (68), Expect = 0.41
Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 27/76 (35%)
Query: 201 MLETMVEE--TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYS 258
+ E+ +YL V F KL+ + E LAK
Sbjct: 41 AMAPKYEKLAEEYLDVIFLKLD-------------CNQEN------------KTLAKELG 75
Query: 259 IKTFPALVYFRNGNPL 274
I+ P + + +
Sbjct: 76 IRVVPTFKILKENSVV 91
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Length = 106
Score = 29.9 bits (68), Expect = 0.42
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 221 CNICDQILEGLEKVDDECDIYG--IHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273
C C I +E++ E Y + +VK+ ++P A +Y I++ P L+ F+NG
Sbjct: 31 CGPCRMIAPIIEELAKE---YEGKVKVVKVNVDENPNTAAQYGIRSIPTLLLFKNGQV 85
>2yzu_A Thioredoxin; redox protein, electron transport, structural
genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Length = 109
Score = 30.0 bits (68), Expect = 0.42
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 221 CNICDQILEGLEKVDDECDIYG--IHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273
C C I LE++ E Y + + K+ ++P+ A RY + + P ++ F++G P
Sbjct: 30 CAPCRMIAPILEEIAKE---YEGKLLVAKLDVDENPKTAMRYRVMSIPTVILFKDGQP 84
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox
enzymology, oxidoreductase, redox-active center,
transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A
2o85_A 2o89_A 2o87_A
Length = 106
Score = 29.6 bits (67), Expect = 0.46
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 221 CNICDQILEGLEKVDDECDIYG--IHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273
C C I LE++ + Y ++K+ ++P A +Y + + P L+ F++G P
Sbjct: 31 CGPCKMIAPVLEELAAD---YEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQP 85
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 30.1 bits (68), Expect = 0.48
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 221 CNICDQILEGLEKVDDECDIYG--IHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273
C C + E+ E YG +I +P A++Y ++ P +F +G P
Sbjct: 36 CPYCKAMEPYFEEYAKE---YGSSAVFGRINIATNPWTAEKYGVQGTPTFKFFCHGRP 90
>1hcf_A Neurotrophin-4; transferase/hormone, complex(transferase/growth
factor), neurotrophin-4/5, TRKB receptor, NGF-beta
superfamily; 2.7A {Homo sapiens} SCOP: g.17.1.3 PDB:
1b98_A 1b8m_B
Length = 130
Score = 29.8 bits (66), Expect = 0.60
Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
Query: 164 RHRFPSIYRGDLSEEEEVLQWLITQKT-EDRIELITRVMLETMVEETQYLAVYFYKLNCN 222
P+ RG+L+ + V W+ ++T D V+ E L YF++ C
Sbjct: 3 SETAPASRRGELAVCDAVSGWVTDRRTAVDLRGREVEVLGEVPAAGGSPLRQYFFETRCK 62
Query: 223 ICDQILEGLEKVDDEC 238
+ G C
Sbjct: 63 ADNAEEGGPGAGGGGC 78
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE,
fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Length = 121
Score = 29.6 bits (67), Expect = 0.61
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 221 CNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273
C C I EK+ D + K+ + Q+A+ I+ P V+F+NG
Sbjct: 45 CGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVFFKNGQK 100
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC
structure funded by NIH, protein structure initiative,
PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Length = 85
Score = 28.8 bits (65), Expect = 0.62
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 221 CNICDQILEGLEKVDDE-CDIYGIHMVKI-QDPQLAKRYSIKTFPALVYFRNG 271
C C +E+V +E D + + + ++PQ A Y I P +V +
Sbjct: 14 CPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVINGDV 66
Score = 25.3 bits (56), Expect = 10.0
Identities = 10/52 (19%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 8 CPECDDILEELEHIDGD-ADQYGIDMVKISD-TEAAAKYNIINLPSLVYFRK 57
CP C +E + + D ++ + + + + A +Y I+ +P++V
Sbjct: 14 CPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVINGD 65
>2l57_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, PSI protein structure initiative; NMR
{Clostridium perfringens}
Length = 126
Score = 29.4 bits (66), Expect = 0.67
Identities = 9/46 (19%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 14 ILEEL-EHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQ 58
L + + +G + Y + + + + A KY+ +P+ V+ K+
Sbjct: 47 ELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKE 92
Score = 26.7 bits (59), Expect = 7.3
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 11/62 (17%)
Query: 221 CNICDQILEGLEKVDDECDIYG----IHMVKI---QDPQLAKRYSIKTFPALVYF-RNGN 272
C C ++ + L V E I+ ++ ++ LA +Y P V+ + GN
Sbjct: 38 CPYCVEMQKELSYVSKE---REGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEGN 94
Query: 273 PL 274
Sbjct: 95 KF 96
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy,
IGE, conformational diversity, multispecficity,
redox-active center; 2.77A {Escherichia coli} SCOP:
c.47.1.1
Length = 123
Score = 29.4 bits (66), Expect = 0.67
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 224 CDQILEGLEKVDDECDIYG--IHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273
C I L+++ DE Y + + K+ Q+P A +Y I+ P L+ F+NG
Sbjct: 50 CKMIAPILDEIADE---YQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEV 101
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 29.8 bits (67), Expect = 0.69
Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 214 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRN 270
V+F+ C Q+ E + ++ E + VK+ P+++++Y I + P ++F+N
Sbjct: 37 VHFWAPWAPQCAQMNEVMAELAKELP--QVSFVKLEAEGVPEVSEKYEISSVPTFLFFKN 94
Query: 271 GNPL 274
+
Sbjct: 95 SQKI 98
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2,
protein structure initiative; NMR {Bacteroides
thetaiotaomicron}
Length = 130
Score = 29.3 bits (66), Expect = 0.73
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 221 CNICDQILEGLEKVDDECD----IYGIHMVKIQDPQLAKRYSIKTFPALVYFR-NGNPL 274
C +++ V D + + M K + +L K+Y + +P L++ +G +
Sbjct: 42 CKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVV 100
Score = 26.3 bits (58), Expect = 7.9
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 18/69 (26%)
Query: 95 RMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGV 154
+ L K++ ++ V Y H ++K+ +M+ K +K+GV
Sbjct: 43 KRLSKVVFKDSLVA--DYFNRHFVNLKM------------DME----KGEGVELRKKYGV 84
Query: 155 TKLPAVVYF 163
P +++
Sbjct: 85 HAYPTLLFI 93
Score = 26.3 bits (58), Expect = 7.9
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 30 IDMVKISDTEAAAKYNIINLPSLVYFRK 57
+DM K E KY + P+L++
Sbjct: 68 MDMEKGEGVELRKKYGVHAYPTLLFINS 95
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase;
1.90A {Sulfolobus solfataricus}
Length = 109
Score = 28.8 bits (65), Expect = 0.80
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 221 CNICDQILEGLEKVDDECDIYG--IHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273
C C +KV ++ Y ++ ++ ++A +YS+ P + F NG
Sbjct: 33 CAPCHLYEPIYKKVAEK---YKGKAVFGRLNVDENQKIADKYSVLNIPTTLIFVNGQL 87
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic
thioredoxin, oxidoreductase; NMR {Chlamydomonas
reinhardtii} SCOP: c.47.1.1
Length = 107
Score = 28.8 bits (65), Expect = 0.99
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 221 CNICDQILEGLEKVDDECDIYG--IHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273
C C I ++++ E Y + VK+ + P +A Y I++ P ++ F+ G
Sbjct: 31 CGPCRIIAPVVDEIAGE---YKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKK 85
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 28.9 bits (65), Expect = 1.0
Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 13/43 (30%)
Query: 233 KVD-DECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPL 274
KVD DE ++A++Y+++ P ++ ++G
Sbjct: 72 KVDVDEL------------KEVAEKYNVEAMPTFLFIKDGAEA 102
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 28.8 bits (65), Expect = 1.0
Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 13/43 (30%)
Query: 233 KVD-DECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPL 274
KVD D +A+ I P +++G
Sbjct: 61 KVDVDAV------------AAVAEAAGITAMPTFHVYKDGVKA 91
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding,
phosphorylation, protein biosynthesis, translation
inititation; 1.8A {Homo sapiens}
Length = 208
Score = 29.7 bits (66), Expect = 1.1
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 55 FRKQVPLLYDGDLFDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLE 102
+ +YD DL +EE I++W + E+ + R + ++
Sbjct: 102 IPHILKEMYDADLLEEEVIISWSEKASKKYVSKELAKEIRVKAEPFIK 149
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB:
3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 28.8 bits (65), Expect = 1.1
Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 194 IELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QD 250
+ T ++ + + + + V FY C C I +EK ++ K+ +
Sbjct: 9 TQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP--QADFYKLDVDEL 66
Query: 251 PQLAKRYSIKTFPALVYFRNGNPL 274
+A++ + P L+ F+NG +
Sbjct: 67 GDVAQKNEVSAMPTLLLFKNGKEV 90
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase,
structural genomics consortium, SGC; 2.00A {Plasmodium
falciparum}
Length = 133
Score = 29.0 bits (65), Expect = 1.1
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 214 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRN 270
+ F + C C++I E + + Y + +V I P+L +++IK P ++ N
Sbjct: 45 IKFGAVWCKPCNKIKEYFKNQLNY---YYVTLVDIDVDIHPKLNDQHNIKALPTFEFYFN 101
Query: 271 GN 272
N
Sbjct: 102 LN 103
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 28.8 bits (65), Expect = 1.2
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 13/43 (30%)
Query: 233 KVD-DECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPL 274
KVD DE +A+ Y+++ P ++ ++G +
Sbjct: 64 KVDVDEL------------KDVAEAYNVEAMPTFLFIKDGEKV 94
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR
{Chlamydophila pneumoniae}
Length = 154
Score = 28.7 bits (64), Expect = 1.5
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 233 KVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFR-NGNPL 274
+VD + + ++ +L +Y + FP LV+ G L
Sbjct: 88 EVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVFIDAEGKQL 130
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis}
PDB: 3hyp_A
Length = 141
Score = 28.7 bits (64), Expect = 1.5
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 221 CNICDQILEGLEKVDDECDIYG--IHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273
C C + LE++ E Y I++ K+ ++P+LA+ + I++ P + +
Sbjct: 63 CGPCKMVAPILEELSKE---YAGKIYIYKVNVDKEPELARDFGIQSIPTIWFVPMKGE 117
Score = 27.9 bits (62), Expect = 2.9
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 11/49 (22%)
Query: 14 ILEELEHIDGDADQYG--IDMVKI---SDTEAAAKYNIINLPSLVYFRK 57
ILEEL + +Y I + K+ + E A + I ++P++ +
Sbjct: 72 ILEEL------SKEYAGKIYIYKVNVDKEPELARDFGIQSIPTIWFVPM 114
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2,
protein STRU initiative; NMR {Bacteroides vulgatus}
Length = 136
Score = 28.6 bits (64), Expect = 1.5
Identities = 11/58 (18%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 221 CNICDQILEGLEKVDDECDIYG--IHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273
C C + L+++ E Y I + K+ ++ +LA + I++ P++++
Sbjct: 50 CGPCKMVAPILDELAKE---YDGQIVIYKVDTEKEQELAGAFGIRSIPSILFIPMEGK 104
Score = 27.4 bits (61), Expect = 3.7
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 11/49 (22%)
Query: 14 ILEELEHIDGDADQYG--IDMVKI---SDTEAAAKYNIINLPSLVYFRK 57
IL+EL A +Y I + K+ + E A + I ++PS+++
Sbjct: 59 ILDEL------AKEYDGQIVIYKVDTEKEQELAGAFGIRSIPSILFIPM 101
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 28.5 bits (64), Expect = 1.6
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 13/43 (30%)
Query: 233 KVD-DECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPL 274
KVD DE +A+++S++ P ++ + G+
Sbjct: 70 KVDVDEL------------KPIAEQFSVEAMPTFLFMKEGDVK 100
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase;
NMR {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Length = 85
Score = 27.6 bits (62), Expect = 1.6
Identities = 10/48 (20%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 8 CPECDDILEELEHIDGD-ADQYGIDMVKISD-TEAAAKYNIINLPSLV 53
CP C +E ++ + D+ ++ + I E A +Y ++ +P++
Sbjct: 13 CPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIA 60
Score = 25.7 bits (57), Expect = 8.9
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 221 CNICDQILEGLEKVDDECDIYG--IHMVKI---QDPQLAKRYSIKTFPALV 266
C C +E +++ E +G I + KI D + A Y + PA+
Sbjct: 13 CPYCPMAIEVVDEAKKE---FGDKIDVEKIDIMVDREKAIEYGLMAVPAIA 60
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP:
c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Length = 105
Score = 28.0 bits (63), Expect = 1.6
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 221 CNICDQILEGLEKVDDECDIYG--IHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273
C C I ++++ E Y I + K+ + P +A +Y+I++ P +++F+NG
Sbjct: 30 CGPCKLIAPVIDELAKE---YSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGER 84
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 28.5 bits (64), Expect = 1.6
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 233 KVD-DECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPL 274
KVD DE +A ++I+ P ++ + G L
Sbjct: 74 KVDTDEL------------KSVASDWAIQAMPTFMFLKEGKIL 104
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 29.0 bits (65), Expect = 1.6
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 221 CNICDQILEGLEKVDDECDIYG--IHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273
C C I L+++ DE Y + + K+ Q+P A +Y I+ P L+ F+NG
Sbjct: 42 CGPCKMIAPILDEIADE---YQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEV 96
>2yii_A Phenylalanine ammonia-lyase; HET: MDO; 2.18A {Taxus wallichiana
var} PDB: 3nz4_A*
Length = 705
Score = 29.8 bits (67), Expect = 1.7
Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 25/80 (31%)
Query: 226 QILEG--LEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFP--------ALVYFR------ 269
+L +++ E QD RY++++ P +
Sbjct: 312 WLLRSSPFQELSREYYSIDKLKKPKQD-----RYALRSSPQWLAPLVQTIRDATTTVETE 366
Query: 270 ----NGNPLIFEGENKILKG 285
N NP+I ++ L G
Sbjct: 367 VNSANDNPIIDHANDRALHG 386
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat
motif; 1.50A {Saccharomyces cerevisiae}
Length = 177
Score = 28.9 bits (64), Expect = 1.8
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 52 LVYFRKQVPLLYDGDLFDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLE 102
+ K + LY+ D+ EE+I+ + T + E+ + RR +
Sbjct: 105 IPLLPKILVQLYNNDIISEEEIMRFGTKSSKKFVPKEVSKKVRRAAKPFIT 155
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 28.1 bits (63), Expect = 1.8
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 214 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRN 270
V F+ C C I +++ ++ Y VK+ + + A++Y+I P + +N
Sbjct: 38 VDFFATWCGPCKTIAPLFKELSEK---YDAIFVKVDVDKLEETARKYNISAMPTFIAIKN 94
Query: 271 GNPL 274
G +
Sbjct: 95 GEKV 98
Score = 26.2 bits (58), Expect = 9.1
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 12/56 (21%)
Query: 8 CPECDDI---LEELEHIDGDADQYGIDMVKI---SDTEAAAKYNIINLPSLVYFRK 57
C C I +EL +++Y VK+ E A KYNI +P+ + +
Sbjct: 45 CGPCKTIAPLFKEL------SEKYDAIFVKVDVDKLEETARKYNISAMPTFIAIKN 94
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta
barrels, structural genomics, protein structure
initiative; 2.00A {Agrobacterium tumefaciens str} SCOP:
d.58.4.16
Length = 99
Score = 27.6 bits (62), Expect = 1.8
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 241 YGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPLIFEGENKILKGT 286
Y I V ++D + K Y PA F N L G L+GT
Sbjct: 7 YWIAQVDVRDSERYKDYVSTAKPAFERF-GANFLARGGSVTELEGT 51
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola
hepatica}
Length = 104
Score = 28.0 bits (63), Expect = 1.9
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 13/43 (30%)
Query: 233 KVD-DECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPL 274
KVD D+ + A +YS+ P V+ ++G +
Sbjct: 55 KVDVDQN------------EEAAAKYSVTAMPTFVFIKDGKEV 85
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 28.2 bits (63), Expect = 1.9
Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 221 CNICDQILEGLEKVDDECDIYG-IHMVKI---QDPQLAKRYSIKTFPALVYFRNGN 272
C C ++ + L + + + +K+ ++ A Y + + PAL + +
Sbjct: 35 CGPCQRLGQILPSIAEA---NKDVTFIKVDVDKNGNAADAYGVSSIPALFFVKKEG 87
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 29.3 bits (65), Expect = 1.9
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 249 QDPQLAKRYSIKTFPALVYFRNGN 272
++ L +Y + FP L+ FR
Sbjct: 79 KNKALCAKYDVNGFPTLMVFRPPK 102
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 28.2 bits (63), Expect = 1.9
Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 13/72 (18%)
Query: 214 VYFYKLNCNIC---DQILEGLEKVDDECDIYGIHMVKI-------QDPQLAKRYSIKTFP 263
+ Y C C ++ +V + +++ QD L K ++ P
Sbjct: 36 LDLYADWCVACKEFEKYTFSDPQVQKA--LADTVLLQANVTANDAQDVALLKHLNVLGLP 93
Query: 264 ALVYF-RNGNPL 274
+++F G
Sbjct: 94 TILFFDGQGQEH 105
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP:
c.47.1.1
Length = 113
Score = 28.1 bits (63), Expect = 1.9
Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 13/43 (30%)
Query: 233 KVD-DECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPL 274
KVD DE +A+ ++++ P ++ ++G +
Sbjct: 62 KVDVDEL------------KAVAEEWNVEAMPTFIFLKDGKLV 92
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron
transport; 2.20A {Drosophila melanogaster} SCOP:
c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Length = 106
Score = 27.6 bits (62), Expect = 2.1
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 13/43 (30%)
Query: 233 KVD-DECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPL 274
KVD DEC +A Y+I + P V+ +NG +
Sbjct: 57 KVDVDEC------------EDIAMEYNISSMPTFVFLKNGVKV 87
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 27.7 bits (62), Expect = 2.2
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 233 KVD-DECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPL 274
+VD D+C +A +K+ P +F+ G +
Sbjct: 67 EVDVDDC------------QDVASECEVKSMPTFQFFKKGQKV 97
>3q4o_A Uncharacterized protein MJ0754; ferritin-like protein, four-helix
bundle, metal binding, DIN center, unknown function;
HET: B3P; 1.34A {Methanocaldococcus jannaschii} PDB:
3q4q_A* 3q4r_A* 3q4n_A
Length = 196
Score = 28.4 bits (63), Expect = 2.3
Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 11/86 (12%)
Query: 43 KYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLE 102
KYNI + P +L+ + + D ++ IE+++ L+K +
Sbjct: 78 KYNIPD-PVKNDSIGVFSNPKFEELYKKLVEKGDKSEVDALKVGATIEDLDIADLEKWIN 136
Query: 103 ENEFVTVFFYETDHKDSVKVLERLEK 128
+TD++D V E L K
Sbjct: 137 ----------KTDNEDIKFVYENLMK 152
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Length = 112
Score = 27.7 bits (62), Expect = 2.4
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 13/43 (30%)
Query: 233 KVD-DECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPL 274
KVD DE ++ ++ +I + P ++NG+ +
Sbjct: 62 KVDVDEV------------SEVTEKENITSMPTFKVYKNGSSV 92
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A*
1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 27.6 bits (62), Expect = 2.5
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 233 KVD-DECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPL 274
+VD D+C +A +K+ P +F+ G +
Sbjct: 56 EVDVDDC------------QDVASESEVKSMPTFQFFKKGQKV 86
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat,
AA motif; 2.30A {Saccharomyces cerevisiae} SCOP:
a.118.1.14
Length = 189
Score = 28.4 bits (63), Expect = 2.6
Identities = 10/54 (18%), Positives = 25/54 (46%)
Query: 52 LVYFRKQVPLLYDGDLFDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENE 105
+ + LYD D+ +E+ I W + +E++++ + ++ L +E
Sbjct: 129 DLILFSALVSLYDNDIIEEDVIYKWWDNVSTDPRYDEVKKLTVKWVEWLQNADE 182
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat
domain, structural genomics, PSI, protein structure
initiative; 1.90A {Homo sapiens}
Length = 168
Score = 28.1 bits (62), Expect = 3.1
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 54 YFRKQVPLLYDGDLFDEEKILTWLTSQD 81
+ YD ++ +EE L W
Sbjct: 118 MLLRFFVHFYDMEIIEEEAFLAWKEDIT 145
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 27.3 bits (61), Expect = 3.2
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 13/43 (30%)
Query: 233 KVD-DECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPL 274
K D DE P +AK + P V ++G +
Sbjct: 66 KCDVDES------------PDIAKECEVTAMPTFVLGKDGQLI 96
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 27.4 bits (61), Expect = 3.5
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 13/43 (30%)
Query: 233 KVD-DECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPL 274
KVD D ++ + + P + R+G L
Sbjct: 73 KVDADNN------------SEIVSKCRVLQLPTFIIARSGKML 103
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines
missing, unknown funct; 1.50A {Trypanosoma cruzi}
Length = 127
Score = 27.3 bits (61), Expect = 3.7
Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 232 EKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGN---PLIFEGE 279
+ + +I + P + +R + FP + Y+ + P + G+
Sbjct: 60 MSQSQKRNHLTFVAARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQ 113
>1w27_A Phenylalanine ammonia-lyase 1; phenylpropanoid metabolism, MIO;
HET: MDO; 1.7A {Petroselinum crispum} SCOP: a.127.1.2
Length = 714
Score = 28.6 bits (64), Expect = 3.9
Identities = 18/80 (22%), Positives = 25/80 (31%), Gaps = 25/80 (31%)
Query: 226 QILEG--LEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFP--------ALVYFR------ 269
IL+G K + QD RY+++T P +
Sbjct: 321 HILDGSAYVKAAQKLHEMDPLQKPKQD-----RYALRTSPQWLGPQIEVIRSSTKMIERE 375
Query: 270 ----NGNPLIFEGENKILKG 285
N NPLI NK + G
Sbjct: 376 INSVNDNPLIDVSRNKAIHG 395
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 27.5 bits (61), Expect = 4.0
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 13/43 (30%)
Query: 233 KVD-DECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPL 274
+D DE + + IK P + R+G +
Sbjct: 82 VIDVDEL------------SDFSASWEIKATPTFFFLRDGQQV 112
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 4.8
Identities = 9/77 (11%), Positives = 22/77 (28%), Gaps = 18/77 (23%)
Query: 144 ADPRYARKWGVTKLPAVVYFRHRF-PSIYRGDLSEEEEVLQWLITQKTE------DRIEL 196
+P RKW R + D + + +W K + + E
Sbjct: 82 QEPESIRKW-----------REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ 130
Query: 197 ITRVMLETMVEETQYLA 213
+ + + + + +
Sbjct: 131 VEKNKINNRIADKAFYQ 147
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport;
2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 26.5 bits (59), Expect = 5.3
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 13/41 (31%)
Query: 233 KVD-DECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGN 272
+VD +C A +I P +FRN
Sbjct: 57 EVDVHQC------------QGTAATNNISATPTFQFFRNKV 85
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics,
structural genomics consortium, SGC, NU MUTT-like,
hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB:
1iry_A 3zr0_A* 3zr1_A
Length = 176
Score = 27.4 bits (61), Expect = 6.0
Identities = 7/60 (11%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 70 EEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKI 129
+E W + ++ + LL++ +F F ++ L ++ +
Sbjct: 119 DEMRPCWFQLDQIPFK--DMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV 176
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat,
guanine nucleotide exchange factor, disease mutation,
leukodystrophy; 2.00A {Homo sapiens}
Length = 182
Score = 26.9 bits (59), Expect = 8.1
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 54 YFRKQVPLLYDGDLFDEEKILTWLTSQD 81
K + Y ++ E IL+W + +D
Sbjct: 123 SMAKVLMAFYQLEILAGETILSWFSQRD 150
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.9 bits (59), Expect = 8.8
Identities = 8/21 (38%), Positives = 9/21 (42%), Gaps = 6/21 (28%)
Query: 8 CPECDD----ILEELEHIDGD 24
CPEC I+E GD
Sbjct: 24 CPECKVYPPKIVERFSE--GD 42
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1,
peptide drug, prostate cancer, transferase; HET: ANP;
1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A*
3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A*
2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A*
3cxw_A* 3cy3_A* 2bik_B* ...
Length = 320
Score = 26.9 bits (60), Expect = 9.7
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 276 FEGENKILKGTY-IGTYISTKAFSLIPFC 303
FE + +I++G +S++ LI +C
Sbjct: 249 FEHDEEIIRGQVFFRQRVSSECQHLIRWC 277
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.141 0.414
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,600,675
Number of extensions: 349817
Number of successful extensions: 1213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1183
Number of HSP's successfully gapped: 204
Length of query: 346
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 252
Effective length of database: 4,077,219
Effective search space: 1027459188
Effective search space used: 1027459188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)