RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy160
(346 letters)
>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 77
Score = 34.2 bits (79), Expect = 0.002
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 8/73 (10%)
Query: 8 CPECDDILEELEHIDGDADQYGID--MVKISDTEAAAKYNIINLPSLVYFRKQVPLLYDG 65
C C + + + GID KI + + + + LP L + G
Sbjct: 11 CANCQMLEKNAREA---VKELGIDAEFEKIKEMDQILEAGLTALPGLAVDGELK---IMG 64
Query: 66 DLFDEEKILTWLT 78
+ +E+I L+
Sbjct: 65 RVASKEEIKKILS 77
Score = 26.9 bits (60), Expect = 0.87
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 135 NMDITFVKMADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWL 185
+D F K+ + + G+T LP + G ++ +EE+ + L
Sbjct: 29 GIDAEFEKIKEMDQILEAGLTALPGLAVDGE---LKIMGRVASKEEIKKIL 76
Score = 26.5 bits (59), Expect = 1.3
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 221 CNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALV 266
C C + + + E I KI++ + P L
Sbjct: 11 CANCQMLEKNAREAVKELGI-DAEFEKIKEMDQILEAGLTALPGLA 55
>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 217
Score = 36.6 bits (84), Expect = 0.003
Identities = 12/68 (17%), Positives = 27/68 (39%)
Query: 207 EETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALV 266
++ + V Y+ CD + LE + E + ++ + R+S P L+
Sbjct: 118 QKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTGAGDRFSSDVLPTLL 177
Query: 267 YFRNGNPL 274
++ G +
Sbjct: 178 VYKGGELI 185
Score = 28.5 bits (63), Expect = 0.99
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 8 CPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQVPLLYDGDL 67
CD + LE + + ++ S+T A +++ LP+L+ ++ G+L
Sbjct: 132 VRGCDALNSSLECLAAEYPMVKFCKIRASNTGAGDRFSSDVLPTLLVYK-------GGEL 184
Query: 68 FDE 70
Sbjct: 185 ISN 187
>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo
sapiens) [TaxId: 9606]}
Length = 120
Score = 34.4 bits (78), Expect = 0.004
Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 189 KTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248
+ ED + ++ + + +YL V FY C C + K + G +
Sbjct: 4 EEEDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLA 63
Query: 249 -----QDPQLAKRYSIKTFPALVYFRNGNP 273
++ LA++Y ++ +P + +FRNG+
Sbjct: 64 KVDATEESDLAQQYGVRGYPTIKFFRNGDT 93
>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein
Bta {Streptococcus pneumoniae [TaxId: 1313]}
Length = 115
Score = 31.4 bits (70), Expect = 0.046
Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 6/86 (6%)
Query: 194 IELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDE------CDIYGIHMVK 247
+E+ T V + +++ + + + C C + L V E
Sbjct: 11 LEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQL 70
Query: 248 IQDPQLAKRYSIKTFPALVYFRNGNP 273
RY I T P V+ +G
Sbjct: 71 NDLQAFRSRYGIPTVPGFVHITDGQI 96
>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo
sapiens) [TaxId: 9606]}
Length = 137
Score = 31.3 bits (70), Expect = 0.063
Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 5/104 (4%)
Query: 100 LLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD--PRYARKWGVTKL 157
L EE+ V + F +K+ E L I + N + ++ P + + + +
Sbjct: 18 LSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDP 77
Query: 158 PAVVYFRHRFPSIYRGDLSEEEEVLQWLITQKTE--DRIELITR 199
V++F I + + W + K E D IE + R
Sbjct: 78 CTVMFFFRNKH-IMIDLGTGNNNKINWAMEDKQEMVDIIETVYR 120
Score = 29.7 bits (66), Expect = 0.28
Identities = 10/74 (13%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 207 EETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIH--MVKIQDPQLAKRYSIKTFPA 264
EE + + + F C ++ E L + ++ + + + + P K Y +
Sbjct: 20 EEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCT 79
Query: 265 LVYFRNGNPLIFEG 278
+++F ++ +
Sbjct: 80 VMFFFRNKHIMIDL 93
>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 102
Score = 30.1 bits (68), Expect = 0.12
Identities = 12/82 (14%), Positives = 27/82 (32%), Gaps = 8/82 (9%)
Query: 2 YINDENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRK--QV 59
Y +++ E E I D++ A K + L + ++ +
Sbjct: 25 YFKNKDSEHYKAFKEAAEEFHPY-----IPFFATFDSKVAKKLTL-KLNEIDFYEAFMEE 78
Query: 60 PLLYDGDLFDEEKILTWLTSQD 81
P+ EE+I+ ++
Sbjct: 79 PVTIPDKPNSEEEIVNFVEEHR 100
>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE
{Escherichia coli [TaxId: 562]}
Length = 132
Score = 29.6 bits (66), Expect = 0.26
Identities = 7/78 (8%), Positives = 25/78 (32%), Gaps = 5/78 (6%)
Query: 6 ENCPECDDILEELEHIDGDADQYGIDMVKISDTEA---AAKYNIINLPSLVYFRKQVPL- 61
+ PE D + + + Y + ++ ++ + P+ + F
Sbjct: 46 KRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRG 105
Query: 62 LYDGDLFDEEKILTWLTS 79
+ +G +++ +
Sbjct: 106 VLNGIH-PWAELINLMRG 122
>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId:
1167]}
Length = 108
Score = 28.2 bits (62), Expect = 0.59
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 203 ETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQD--PQLAKRYSIK 260
+++ Q + VYF+ C C + + + + D P K+Y ++
Sbjct: 14 SEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVE 73
Query: 261 TFPALVYFRNGNPL 274
PAL + L
Sbjct: 74 GVPALRLVKGEQIL 87
>d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 219
Score = 28.3 bits (62), Expect = 1.0
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 229 EGLEKVDDECDIYGIHMV-KIQDPQLAKRYSIKTFPALVYFRNGNPLIFEGENKILKGTY 287
+ +E V G ++V + ++ +R IKT+ ++ N + K +KG
Sbjct: 162 QLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTY--VILGTPENIM------KAVKGEA 213
Query: 288 IGTYIS 293
+GT I+
Sbjct: 214 VGTVIA 219
>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE
{Salmonella typhimurium [TaxId: 90371]}
Length = 119
Score = 27.3 bits (60), Expect = 1.3
Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 3/77 (3%)
Query: 6 ENCPECDDILEELEHIDGDADQYGIDMVKI---SDTEAAAKYNIINLPSLVYFRKQVPLL 62
PE D + + + Q+ + ++N+ P+ + F
Sbjct: 40 RRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGKLRG 99
Query: 63 YDGDLFDEEKILTWLTS 79
+ ++LT + S
Sbjct: 100 ALSGIHPWAELLTLMRS 116
>d1t4za_ c.47.1.15 (A:) Adaptive-response sensory-kinase SasA,
N-terminal domain {Synechococcus elongatus [TaxId:
32046]}
Length = 105
Score = 27.1 bits (60), Expect = 1.3
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Query: 222 NICDQILEGLEKVDDECDIYGIHMVKI-QDPQLAKRYSIKTFPALV 266
NI + + + ++ + PQL + Y + PALV
Sbjct: 34 NILAAVEATVP--------ISLQVINVADQPQLVEYYRLVVTPALV 71
>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase
Hmth1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 156
Score = 27.3 bits (60), Expect = 1.8
Identities = 7/61 (11%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 69 DEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEK 128
+E W + ++ + LL++ +F F ++ L ++
Sbjct: 98 SDEMRPCWFQLDQIPFK--DMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDT 155
Query: 129 I 129
+
Sbjct: 156 V 156
>d2h3ka1 b.1.28.1 (A:1-144) Iron-regulated surface determinant
protein H, IsdH {Staphylococcus aureus [TaxId: 1280]}
Length = 144
Score = 26.9 bits (59), Expect = 2.2
Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 16/141 (11%)
Query: 12 DDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEE 71
D LE EH G +Q ++ ++ + I P+ VY+ K+ + D
Sbjct: 11 DPALENKEHDIGPREQVNFQLLDKNNETQYYHFFSIKDPADVYYTKKKAEVE----LDIN 66
Query: 72 KILTWLTSQDVFEIKNEIEEVNRRMLDKLLE----ENEFVTVFFYETDHKDSVKVLERLE 127
TW K E+ E N+++ +L+ + + F +D +K++ +
Sbjct: 67 TASTWK--------KFEVYENNQKLPVRLVSYSPVPEDHAYIRFPVSDGTQELKIVSSTQ 118
Query: 128 KIDGETDNMDITFVKMADPRY 148
DGE N D T + A P Y
Sbjct: 119 IDDGEETNYDYTKLVFAKPIY 139
>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 119
Score = 26.4 bits (58), Expect = 2.9
Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 2 YINDENCPECDDILEELEHIDGDADQYGIDMVKIS---DTEAAAKYNIINLPSLVYFRK 57
++ ++C CD + + ++ + D+ ++V E A +Y I P+ +
Sbjct: 29 FVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQD 87
>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b
epsilon {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 161
Score = 26.4 bits (58), Expect = 4.1
Identities = 9/48 (18%), Positives = 22/48 (45%)
Query: 55 FRKQVPLLYDGDLFDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLE 102
+ LYD D+ +E+ I W + +E++++ + ++ L
Sbjct: 112 LFSALVSLYDNDIIEEDVIYKWWDNVSTDPRYDEVKKLTVKWVEWLQN 159
>d1flca1 b.19.1.3 (A:151-306) Hemagglutinin domain of
haemagglutinin-esterase-fusion glycoprotein HEF1
{Influenza C virus [TaxId: 11552]}
Length = 156
Score = 26.2 bits (57), Expect = 4.4
Identities = 11/55 (20%), Positives = 13/55 (23%), Gaps = 5/55 (9%)
Query: 263 PALVYFRNG---NPLIFEGENKILKGTYIGTYISTKAFSLIPFCFSEKHPGAFQT 314
PAL N E T GTY L+ C+
Sbjct: 32 PALYTQEVKPSENKCGKENLAFFTLPTQFGTYECKL--HLVASCYFIYDSKEVYN 84
>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein
C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}
Length = 100
Score = 25.5 bits (55), Expect = 4.6
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 214 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRY 257
F K C +CD+ E L+ D + + + ++ +RY
Sbjct: 20 TLFTKAPCPLCDEAKEVLQPYKDRFILQEVDITLPENSTWYERY 63
>d1ufra_ c.61.1.1 (A:) Pyrimidine operon regulator PyrR {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 26.2 bits (57), Expect = 4.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 104 NEFVTVFFYETDHKDSVKVLER 125
+E V V E D +D V++ ER
Sbjct: 157 SEVVKVKVEEVDGEDRVELWER 178
>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 85
Score = 24.9 bits (53), Expect = 6.0
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 214 VYFYKLNCNICDQI--LEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNG 271
F C C + + + ++ +++PQ A Y I P +V +
Sbjct: 7 ELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVINGDV 66
>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius,
formerly Bacillus acidocaldarius [TaxId: 405212]}
Length = 105
Score = 25.1 bits (54), Expect = 6.3
Identities = 13/75 (17%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 203 ETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSI 259
+ ++ + + V F+ C C + + + E + + K+ ++P+ ++ I
Sbjct: 11 QQAIQGDKPVLVDFWAAWCGPCRMM-APVLEEFAEAHADKVTVAKLNVDENPETTSQFGI 69
Query: 260 KTFPALVYFRNGNPL 274
+ P L+ F+ G P+
Sbjct: 70 MSIPTLILFKGGEPV 84
>d2fiua1 d.58.4.16 (A:1-95) Hypothetical protein Atu0297
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 95
Score = 24.8 bits (54), Expect = 7.3
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 6/47 (12%)
Query: 241 YGIHMVKIQDPQLAKRYSIKTFPAL------VYFRNGNPLIFEGENK 281
Y I V ++D + K Y PA R G+ EG +
Sbjct: 5 YWIAQVDVRDSERYKDYVSTAKPAFERFGANFLARGGSVTELEGTAR 51
>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G
{Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 25.2 bits (55), Expect = 7.7
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 55 FRKQVPLLYDGDLFDEEKILTW 76
R LYD D+ E+ +W
Sbjct: 106 LRMFFDALYDEDVVKEDAFYSW 127
>d1a3ca_ c.61.1.1 (A:) Pyrimidine operon regulator PyrR {Bacillus
subtilis [TaxId: 1423]}
Length = 178
Score = 25.4 bits (55), Expect = 9.9
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 104 NEFVTVFFYETDHKDSVKVLE 124
+E V V E D D V + E
Sbjct: 157 SEKVMVQLDEVDQNDLVAIYE 177
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.141 0.414
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,386,001
Number of extensions: 69538
Number of successful extensions: 261
Number of sequences better than 10.0: 1
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 43
Length of query: 346
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 260
Effective length of database: 1,226,816
Effective search space: 318972160
Effective search space used: 318972160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)