BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16001
(318 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VCE1|BECN1_DROME Beclin-1-like protein OS=Drosophila melanogaster GN=Atg6 PE=2 SV=1
Length = 422
Score = 321 bits (822), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 147/214 (68%), Positives = 176/214 (82%), Gaps = 1/214 (0%)
Query: 98 KELKNTKQDFQEYSDFLKTLELQLQYSLSQLNKFKSTNVFNATFHIWHSGHFGTINNFRL 157
+E +++ D ++LE Q+ YS QL+K + TN+FN TFHIWH+GHFGTINNFRL
Sbjct: 207 REYTKHRRELMLTEDDKRSLECQIAYSKQQLDKLRDTNIFNITFHIWHAGHFGTINNFRL 266
Query: 158 GTLPSAPVDWSEINAAWGQTALLLTALARKLNLTFQRYRIVPYGNHSYIEDTTEHKNLPL 217
G LPS VDWSEINAAWGQT LLL+ALARK+ LTF+RYR+VP+GNHSY+E E++ LPL
Sbjct: 267 GRLPSVSVDWSEINAAWGQTVLLLSALARKIGLTFERYRVVPFGNHSYVEVLGENRELPL 326
Query: 218 FASGGAKFFWDTKFDMAMVAFLDCLQQFKEELEKGDSEFHLPYNMDSKGKIEDETTGNTY 277
+ SGG KFFWDTKFD AMVAFLDCL QF++E+EK D+EF LPY M+ KGKI D +TGN+Y
Sbjct: 327 YGSGGFKFFWDTKFDAAMVAFLDCLTQFQKEVEKRDTEFLLPYKME-KGKIIDPSTGNSY 385
Query: 278 SVKYQFNSQEQWTKALKFMLTNLKWGLAWVSSQF 311
S+K QFNS+EQWTKALKFMLTNLKWGLAWVSSQF
Sbjct: 386 SIKIQFNSEEQWTKALKFMLTNLKWGLAWVSSQF 419
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 68/110 (61%), Gaps = 2/110 (1%)
Query: 12 VPICSSQDIDLESQ-ANSLDHFVPAFKLVDSTNGSNGFCLLGKDESSNSKGHQMKVYANL 70
+PI L+ Q A+S DHFVP ++L DS NG+ GF L+ + K+ A L
Sbjct: 39 LPIYGDNGNTLDPQDASSFDHFVPPYRLTDSINGT-GFMLVSDGRDNKKMSAAFKLKAEL 97
Query: 71 FDFLSSNSGIDHPLCEECTDTLLDMMDKELKNTKQDFQEYSDFLKTLELQ 120
FD LSSNS IDHPLCEEC D++L++MD+EL+ + ++ Y +L LE Q
Sbjct: 98 FDCLSSNSEIDHPLCEECADSMLEIMDRELRIAEDEWDVYKAYLDELEQQ 147
>sp|Q91XJ1|BECN1_RAT Beclin-1 OS=Rattus norvegicus GN=Becn1 PE=1 SV=1
Length = 448
Score = 319 bits (817), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 153/220 (69%), Positives = 178/220 (80%), Gaps = 3/220 (1%)
Query: 98 KELKNTKQDFQEYSDFLKTLELQLQYSLSQLNKFKSTNVFNATFHIWHSGHFGTINNFRL 157
+E K+ E D LK++E Q++Y+ QL+K K TNVFNATFHIWHSG FGTINNFRL
Sbjct: 229 REYSEFKRQQLELDDELKSVENQMRYAQMQLDKLKKTNVFNATFHIWHSGQFGTINNFRL 288
Query: 158 GTLPSAPVDWSEINAAWGQTALLLTALARKLNLTFQRYRIVPYGNHSYIEDTTEH-KNLP 216
G LPSAPV+W+EINAAWGQT LLL ALA K+ L FQRYR+VPYGNHSY+E T+ K LP
Sbjct: 289 GRLPSAPVEWNEINAAWGQTVLLLHALANKMGLKFQRYRLVPYGNHSYLESLTDKSKELP 348
Query: 217 LFASGGAKFFWDTKFDMAMVAFLDCLQQFKEELEKGDSEFHLPYNMD-SKGKIEDE-TTG 274
L+ SGG +FFWD KFD AMVAFLDC+QQFKEE+EKG++ F LPY MD KGKIED +G
Sbjct: 349 LYCSGGLRFFWDNKFDHAMVAFLDCVQQFKEEVEKGETRFCLPYRMDVEKGKIEDTGGSG 408
Query: 275 NTYSVKYQFNSQEQWTKALKFMLTNLKWGLAWVSSQFKNQ 314
+YS+K QFNS+EQWTKALKFMLTNLKWGLAWVSSQF N+
Sbjct: 409 GSYSIKTQFNSEEQWTKALKFMLTNLKWGLAWVSSQFYNK 448
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Query: 31 HFVPAFKLVDSTNGSNGFCLLGKDESSNSK---GHQMKVYANLFDFLSSNSGIDHPLCEE 87
F+P +++ ST +N F L+G+ + ++KV +LFD +S + +DHPLCEE
Sbjct: 79 RFIPPARMM-STESANSFTLIGEASDGGTMENLSRRLKVTGDLFDIMSGQTDVDHPLCEE 137
Query: 88 CTDTLLDMMDKELKNTKQDFQEYSDFLKTLE 118
CTDTLLD +D +L T+ + Q Y L+ LE
Sbjct: 138 CTDTLLDQLDTQLNVTENECQNYKRCLEMLE 168
>sp|Q14457|BECN1_HUMAN Beclin-1 OS=Homo sapiens GN=BECN1 PE=1 SV=2
Length = 450
Score = 318 bits (814), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 152/220 (69%), Positives = 178/220 (80%), Gaps = 3/220 (1%)
Query: 98 KELKNTKQDFQEYSDFLKTLELQLQYSLSQLNKFKSTNVFNATFHIWHSGHFGTINNFRL 157
+E K+ E D LK++E Q++Y+ +QL+K K TNVFNATFHIWHSG FGTINNFRL
Sbjct: 231 REYSEFKRQQLELDDELKSVENQMRYAQTQLDKLKKTNVFNATFHIWHSGQFGTINNFRL 290
Query: 158 GTLPSAPVDWSEINAAWGQTALLLTALARKLNLTFQRYRIVPYGNHSYIEDTTEH-KNLP 216
G LPS PV+W+EINAAWGQT LLL ALA K+ L FQRYR+VPYGNHSY+E T+ K LP
Sbjct: 291 GRLPSVPVEWNEINAAWGQTVLLLHALANKMGLKFQRYRLVPYGNHSYLESLTDKSKELP 350
Query: 217 LFASGGAKFFWDTKFDMAMVAFLDCLQQFKEELEKGDSEFHLPYNMD-SKGKIEDE-TTG 274
L+ SGG +FFWD KFD AMVAFLDC+QQFKEE+EKG++ F LPY MD KGKIED +G
Sbjct: 351 LYCSGGLRFFWDNKFDHAMVAFLDCVQQFKEEVEKGETRFCLPYRMDVEKGKIEDTGGSG 410
Query: 275 NTYSVKYQFNSQEQWTKALKFMLTNLKWGLAWVSSQFKNQ 314
+YS+K QFNS+EQWTKALKFMLTNLKWGLAWVSSQF N+
Sbjct: 411 GSYSIKTQFNSEEQWTKALKFMLTNLKWGLAWVSSQFYNK 450
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 20 IDLESQANSLDHFVPAFKLVDSTNGSNGFCLLGKDESSNSK---GHQMKVYANLFDFLSS 76
I+ Q F+P +++ ST +N F L+G+ + ++KV +LFD +S
Sbjct: 70 IETPRQDGVSRRFIPPARMM-STESANSFTLIGEASDGGTMENLSRRLKVTGDLFDIMSG 128
Query: 77 NSGIDHPLCEECTDTLLDMMDKELKNTKQDFQEYSDFLKTLE 118
+ +DHPLCEECTDTLLD +D +L T+ + Q Y L+ LE
Sbjct: 129 QTDVDHPLCEECTDTLLDQLDTQLNVTENECQNYKRCLEILE 170
>sp|Q4A1L5|BECN1_PIG Beclin-1 OS=Sus scrofa GN=BECN1 PE=2 SV=1
Length = 448
Score = 317 bits (813), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 152/220 (69%), Positives = 177/220 (80%), Gaps = 3/220 (1%)
Query: 98 KELKNTKQDFQEYSDFLKTLELQLQYSLSQLNKFKSTNVFNATFHIWHSGHFGTINNFRL 157
+E K+ E D LK++E Q++Y+ QL+K K TNVFNATFHIWHSG FGTINNFRL
Sbjct: 229 REYSEFKRQQLELDDELKSVENQMRYAQMQLDKLKKTNVFNATFHIWHSGQFGTINNFRL 288
Query: 158 GTLPSAPVDWSEINAAWGQTALLLTALARKLNLTFQRYRIVPYGNHSYIEDTTEH-KNLP 216
G LPS PV+W+EINAAWGQT LLL ALA K+ L FQRYR+VPYGNHSY+E T+ K LP
Sbjct: 289 GRLPSVPVEWNEINAAWGQTVLLLHALANKMGLKFQRYRLVPYGNHSYLESLTDKSKELP 348
Query: 217 LFASGGAKFFWDTKFDMAMVAFLDCLQQFKEELEKGDSEFHLPYNMD-SKGKIEDE-TTG 274
L+ SGG +FFWD KFD AMVAFLDC+QQFKEE+EKG++ F LPY MD KGKIED +G
Sbjct: 349 LYCSGGLRFFWDNKFDHAMVAFLDCVQQFKEEVEKGETRFCLPYRMDVEKGKIEDTGGSG 408
Query: 275 NTYSVKYQFNSQEQWTKALKFMLTNLKWGLAWVSSQFKNQ 314
+YS+K QFNS+EQWTKALKFMLTNLKWGLAWVSSQF N+
Sbjct: 409 GSYSIKTQFNSEEQWTKALKFMLTNLKWGLAWVSSQFYNK 448
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Query: 31 HFVPAFKLVDSTNGSNGFCLLGKDESSNSK---GHQMKVYANLFDFLSSNSGIDHPLCEE 87
F+P +++ ST +N F L+G+ + ++KV +LFD +S + +DHPLCEE
Sbjct: 79 RFIPPARMM-STESANSFTLIGEASDGGTMENLSRRLKVTGDLFDIMSGQTDVDHPLCEE 137
Query: 88 CTDTLLDMMDKELKNTKQDFQEYSDFLKTLE 118
CTDTLLD +D +L T+ + Q Y L+ LE
Sbjct: 138 CTDTLLDQLDTQLNVTENECQNYKRCLEILE 168
>sp|Q4A1L4|BECN1_BOVIN Beclin-1 OS=Bos taurus GN=BECN1 PE=2 SV=1
Length = 448
Score = 317 bits (813), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 152/220 (69%), Positives = 177/220 (80%), Gaps = 3/220 (1%)
Query: 98 KELKNTKQDFQEYSDFLKTLELQLQYSLSQLNKFKSTNVFNATFHIWHSGHFGTINNFRL 157
+E K+ E D LK++E Q++Y+ QL+K K TNVFNATFHIWHSG FGTINNFRL
Sbjct: 229 REYSEFKRQQLELDDELKSVENQMRYAQMQLDKLKKTNVFNATFHIWHSGQFGTINNFRL 288
Query: 158 GTLPSAPVDWSEINAAWGQTALLLTALARKLNLTFQRYRIVPYGNHSYIEDTTEH-KNLP 216
G LPS PV+W+EINAAWGQT LLL ALA K+ L FQRYR+VPYGNHSY+E T+ K LP
Sbjct: 289 GRLPSVPVEWNEINAAWGQTVLLLHALANKMGLKFQRYRLVPYGNHSYLESLTDKSKELP 348
Query: 217 LFASGGAKFFWDTKFDMAMVAFLDCLQQFKEELEKGDSEFHLPYNMD-SKGKIEDE-TTG 274
L+ SGG +FFWD KFD AMVAFLDC+QQFKEE+EKG++ F LPY MD KGKIED +G
Sbjct: 349 LYCSGGLRFFWDNKFDHAMVAFLDCVQQFKEEVEKGETRFCLPYRMDVEKGKIEDTGGSG 408
Query: 275 NTYSVKYQFNSQEQWTKALKFMLTNLKWGLAWVSSQFKNQ 314
+YS+K QFNS+EQWTKALKFMLTNLKWGLAWVSSQF N+
Sbjct: 409 GSYSIKTQFNSEEQWTKALKFMLTNLKWGLAWVSSQFYNK 448
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Query: 31 HFVPAFKLVDSTNGSNGFCLLGKDESSNSK---GHQMKVYANLFDFLSSNSGIDHPLCEE 87
F+P +++ ST +N F L+G+ + ++KV +LFD +S + +DHPLCEE
Sbjct: 79 RFIPPARMM-STESANSFTLIGEASDGGTMENLSRRLKVTGDLFDIMSGQTDVDHPLCEE 137
Query: 88 CTDTLLDMMDKELKNTKQDFQEYSDFLKTLE 118
CTDTLLD +D +L T+ + Q Y L+ LE
Sbjct: 138 CTDTLLDQLDTQLNVTENECQNYKRCLEILE 168
>sp|Q5R878|BECN1_PONAB Beclin-1 OS=Pongo abelii GN=BECN1 PE=2 SV=1
Length = 450
Score = 317 bits (811), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 152/220 (69%), Positives = 177/220 (80%), Gaps = 3/220 (1%)
Query: 98 KELKNTKQDFQEYSDFLKTLELQLQYSLSQLNKFKSTNVFNATFHIWHSGHFGTINNFRL 157
+E K+ E D LK++E Q++Y+ QL+K K TNVFNATFHIWHSG FGTINNFRL
Sbjct: 231 REYSEFKRQQLELDDELKSVENQMRYAQMQLDKLKKTNVFNATFHIWHSGQFGTINNFRL 290
Query: 158 GTLPSAPVDWSEINAAWGQTALLLTALARKLNLTFQRYRIVPYGNHSYIEDTTEH-KNLP 216
G LPS PV+W+EINAAWGQT LLL ALA K+ L FQRYR+VPYGNHSY+E T+ K LP
Sbjct: 291 GRLPSVPVEWNEINAAWGQTVLLLHALANKMGLKFQRYRLVPYGNHSYLESLTDKSKELP 350
Query: 217 LFASGGAKFFWDTKFDMAMVAFLDCLQQFKEELEKGDSEFHLPYNMD-SKGKIEDE-TTG 274
L+ SGG +FFWD KFD AMVAFLDC+QQFKEE+EKG++ F LPY MD KGKIED +G
Sbjct: 351 LYCSGGLRFFWDNKFDHAMVAFLDCVQQFKEEVEKGETRFCLPYRMDVEKGKIEDTGGSG 410
Query: 275 NTYSVKYQFNSQEQWTKALKFMLTNLKWGLAWVSSQFKNQ 314
+YS+K QFNS+EQWTKALKFMLTNLKWGLAWVSSQF N+
Sbjct: 411 GSYSIKTQFNSEEQWTKALKFMLTNLKWGLAWVSSQFYNK 450
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 20 IDLESQANSLDHFVPAFKLVDSTNGSNGFCLLGKDESSNSK---GHQMKVYANLFDFLSS 76
I+ Q F+P +++ ST +N F L+G+ + ++KV +LFD +S
Sbjct: 70 IETPRQDGVSRRFIPPARMM-STESANSFTLIGEASDGGTMENLSRRLKVTGDLFDIMSG 128
Query: 77 NSGIDHPLCEECTDTLLDMMDKELKNTKQDFQEYSDFLKTLE 118
+ +DHPLCEECTDTLLD +D +L T+ + Q Y L+ LE
Sbjct: 129 QTDVDHPLCEECTDTLLDQLDTQLNVTENECQNYKRCLEILE 170
>sp|Q5ZKS6|BECN1_CHICK Beclin-1 OS=Gallus gallus GN=BECN1 PE=2 SV=1
Length = 447
Score = 317 bits (811), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 153/220 (69%), Positives = 177/220 (80%), Gaps = 3/220 (1%)
Query: 98 KELKNTKQDFQEYSDFLKTLELQLQYSLSQLNKFKSTNVFNATFHIWHSGHFGTINNFRL 157
KE K+ E D LK++E Q++Y+ QL+K K TNVFNATFHIWHSG FGTINNFRL
Sbjct: 228 KEYCEFKRQQLELDDELKSVENQMRYAQMQLDKLKKTNVFNATFHIWHSGQFGTINNFRL 287
Query: 158 GTLPSAPVDWSEINAAWGQTALLLTALARKLNLTFQRYRIVPYGNHSYIEDTTEH-KNLP 216
G LPS PV+W+EINAAWGQT LLL ALA K+ L FQRYR+VPYGNHSY+E T+ K LP
Sbjct: 288 GRLPSVPVEWNEINAAWGQTVLLLHALANKMGLKFQRYRLVPYGNHSYLESLTDKSKELP 347
Query: 217 LFASGGAKFFWDTKFDMAMVAFLDCLQQFKEELEKGDSEFHLPYNMD-SKGKIEDE-TTG 274
L+ SGG +FFWD KFD AMVAFLDC+QQFKEE+EKG++ F LPY MD KGKIED +G
Sbjct: 348 LYCSGGLRFFWDNKFDHAMVAFLDCVQQFKEEVEKGETRFCLPYRMDVEKGKIEDTGGSG 407
Query: 275 NTYSVKYQFNSQEQWTKALKFMLTNLKWGLAWVSSQFKNQ 314
+YS+K QFNS+EQWTKALKFMLTNLKWGLAWVSSQF N+
Sbjct: 408 GSYSIKTQFNSEEQWTKALKFMLTNLKWGLAWVSSQFYNK 447
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Query: 31 HFVPAFKLVDSTNGSNGFCLLGKDESSNSK---GHQMKVYANLFDFLSSNSGIDHPLCEE 87
F+P +++ ST +N F L+G+ + ++KV +LFD +S + +DHPLCEE
Sbjct: 78 RFIPPARMM-STESANSFTLIGEASDGGTMENLSRRLKVTGDLFDIMSGQTDVDHPLCEE 136
Query: 88 CTDTLLDMMDKELKNTKQDFQEYSDFLKTLE 118
CTDTLLD +D +L T+ + Q Y L+ LE
Sbjct: 137 CTDTLLDQLDTQLNITENECQNYKRCLEILE 167
>sp|O88597|BECN1_MOUSE Beclin-1 OS=Mus musculus GN=Becn1 PE=1 SV=3
Length = 448
Score = 317 bits (811), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 152/220 (69%), Positives = 177/220 (80%), Gaps = 3/220 (1%)
Query: 98 KELKNTKQDFQEYSDFLKTLELQLQYSLSQLNKFKSTNVFNATFHIWHSGHFGTINNFRL 157
+E K+ E D LK++E Q++Y+ QL+K K TNVFNATFHIWHSG FGTINNFRL
Sbjct: 229 REYSEFKRQQLELDDELKSVENQVRYAQIQLDKLKKTNVFNATFHIWHSGQFGTINNFRL 288
Query: 158 GTLPSAPVDWSEINAAWGQTALLLTALARKLNLTFQRYRIVPYGNHSYIEDTTEH-KNLP 216
G LPS PV+W+EINAAWGQT LLL ALA K+ L FQRYR+VPYGNHSY+E T+ K LP
Sbjct: 289 GRLPSVPVEWNEINAAWGQTVLLLHALANKMGLKFQRYRLVPYGNHSYLESLTDKSKELP 348
Query: 217 LFASGGAKFFWDTKFDMAMVAFLDCLQQFKEELEKGDSEFHLPYNMD-SKGKIEDE-TTG 274
L+ SGG +FFWD KFD AMVAFLDC+QQFKEE+EKG++ F LPY MD KGKIED +G
Sbjct: 349 LYCSGGLRFFWDNKFDHAMVAFLDCVQQFKEEVEKGETRFCLPYRMDVEKGKIEDTGGSG 408
Query: 275 NTYSVKYQFNSQEQWTKALKFMLTNLKWGLAWVSSQFKNQ 314
+YS+K QFNS+EQWTKALKFMLTNLKWGLAWVSSQF N+
Sbjct: 409 GSYSIKTQFNSEEQWTKALKFMLTNLKWGLAWVSSQFYNK 448
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Query: 31 HFVPAFKLVDSTNGSNGFCLLGKDESSNSK---GHQMKVYANLFDFLSSNSGIDHPLCEE 87
F+P +++ ST +N F L+G+ + ++KV +LFD +S + +DHPLCEE
Sbjct: 79 RFIPPARMM-STESANSFTLIGEASDGGTMENLSRRLKVTGDLFDIMSGQTDVDHPLCEE 137
Query: 88 CTDTLLDMMDKELKNTKQDFQEYSDFLKTLE 118
CTDTLLD +D +L T+ + Q Y L+ LE
Sbjct: 138 CTDTLLDQLDTQLNVTENECQNYKRCLEILE 168
>sp|Q6GP52|BECN1_XENLA Beclin-1 OS=Xenopus laevis GN=becn1 PE=2 SV=1
Length = 445
Score = 316 bits (810), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 153/220 (69%), Positives = 177/220 (80%), Gaps = 3/220 (1%)
Query: 98 KELKNTKQDFQEYSDFLKTLELQLQYSLSQLNKFKSTNVFNATFHIWHSGHFGTINNFRL 157
KE K+ E D LK++E Q++Y+ QL+K K TNVFNATFHIWHSG FGTINNFRL
Sbjct: 226 KEYSEFKRQQLELDDDLKSVENQMRYAQIQLDKLKKTNVFNATFHIWHSGQFGTINNFRL 285
Query: 158 GTLPSAPVDWSEINAAWGQTALLLTALARKLNLTFQRYRIVPYGNHSYIEDTTEH-KNLP 216
G LPS PV+W+EINAAWGQT LLL ALA K+ L FQRYR+VP+GNHSY+E T+ K LP
Sbjct: 286 GRLPSVPVEWNEINAAWGQTVLLLHALANKMGLQFQRYRLVPFGNHSYLESLTDKSKELP 345
Query: 217 LFASGGAKFFWDTKFDMAMVAFLDCLQQFKEELEKGDSEFHLPYNMD-SKGKIEDE-TTG 274
L+ SGG +FFWD KFD AMVAFLDC+QQFKEE+EKGD+ F LPY MD KGKIED +G
Sbjct: 346 LYCSGGLRFFWDNKFDHAMVAFLDCVQQFKEEVEKGDTGFCLPYRMDVDKGKIEDTGGSG 405
Query: 275 NTYSVKYQFNSQEQWTKALKFMLTNLKWGLAWVSSQFKNQ 314
+YS+K QFNS+EQWTKALKFMLTNLKWGLAWVSSQF N+
Sbjct: 406 GSYSIKTQFNSEEQWTKALKFMLTNLKWGLAWVSSQFYNK 445
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 31 HFVPAFKLVDSTNGSNGFCLLGKDESSNSK---GHQMKVYANLFDFLSSNSGIDHPLCEE 87
+P +++ ST + F L+G+ + ++KV +LFD +S + +DHPLCEE
Sbjct: 76 RLIPPARMM-STESATSFTLIGEASDGGTMENLSRRLKVTGDLFDIMSGQTDVDHPLCEE 134
Query: 88 CTDTLLDMMDKELKNTKQDFQEYSDFLKTLE 118
CTDTLLD +D +L T+ + Q Y L+ LE
Sbjct: 135 CTDTLLDQLDTQLNITENECQNYKRCLEILE 165
>sp|Q4A1L3|BECN1_XENTR Beclin-1 OS=Xenopus tropicalis GN=becn1 PE=2 SV=1
Length = 445
Score = 315 bits (807), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 152/220 (69%), Positives = 177/220 (80%), Gaps = 3/220 (1%)
Query: 98 KELKNTKQDFQEYSDFLKTLELQLQYSLSQLNKFKSTNVFNATFHIWHSGHFGTINNFRL 157
KE K+ E D LK++E Q++Y+ QL+K K TNVFNATFHIWHSG FGTINNFRL
Sbjct: 226 KEYSEFKRQQLELDDDLKSVENQMRYAQIQLDKLKKTNVFNATFHIWHSGQFGTINNFRL 285
Query: 158 GTLPSAPVDWSEINAAWGQTALLLTALARKLNLTFQRYRIVPYGNHSYIEDTTEH-KNLP 216
G LPS PV+W+EINAAWGQT LLL ALA K+ L FQRYR++P+GNHSY+E T+ K LP
Sbjct: 286 GRLPSVPVEWNEINAAWGQTVLLLHALANKMGLQFQRYRLMPFGNHSYLESLTDKSKELP 345
Query: 217 LFASGGAKFFWDTKFDMAMVAFLDCLQQFKEELEKGDSEFHLPYNMD-SKGKIEDE-TTG 274
L+ SGG +FFWD KFD AMVAFLDC+QQFKEE+EKGD+ F LPY MD KGKIED +G
Sbjct: 346 LYCSGGLRFFWDNKFDHAMVAFLDCVQQFKEEVEKGDTGFCLPYRMDVEKGKIEDTGGSG 405
Query: 275 NTYSVKYQFNSQEQWTKALKFMLTNLKWGLAWVSSQFKNQ 314
+YS+K QFNS+EQWTKALKFMLTNLKWGLAWVSSQF N+
Sbjct: 406 GSYSIKTQFNSEEQWTKALKFMLTNLKWGLAWVSSQFYNK 445
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 31 HFVPAFKLVDSTNGSNGFCLLGKDESSNSK---GHQMKVYANLFDFLSSNSGIDHPLCEE 87
+P +++ ST + F L+G+ + ++KV +LFD +S + +DHPLCEE
Sbjct: 76 RLIPPARMM-STESATSFTLIGEASDGGTMENLSRRLKVTGDLFDIMSGQTDVDHPLCEE 134
Query: 88 CTDTLLDMMDKELKNTKQDFQEYSDFLKTLE 118
CTDTLLD +D +L T+ + Q Y L+ LE
Sbjct: 135 CTDTLLDQLDTQLNITENECQNYKRCLEILE 165
>sp|A8MW95|BECP1_HUMAN Putative beclin-1-like protein OS=Homo sapiens GN=BECN1P1 PE=5 SV=2
Length = 431
Score = 214 bits (546), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 112/225 (49%), Positives = 144/225 (64%), Gaps = 13/225 (5%)
Query: 101 KNTKQDFQEYS----------DFLKTLELQLQYSLSQLNKFKSTNVFNATFHIWHSGHFG 150
+ +Q +++YS D L +E QLQY+ Q ++ K N F ATF IW G G
Sbjct: 206 QQERQHYRDYSALKRQQLELLDQLGNVENQLQYARVQRDRLKEINCFTATFEIWVEGPLG 265
Query: 151 TINNFRLGTLPSAPVDWSEINAAWGQTALLLTALARKLNLTFQRYRIVPYGNHSYIEDTT 210
INNFRLG LP+ V W+EIN AWGQ ALLL LA + L FQRYR++P GNHSY++ T
Sbjct: 266 VINNFRLGRLPTVRVGWNEINTAWGQAALLLLTLANTIGLQFQRYRLIPCGNHSYLKSLT 325
Query: 211 EHKN-LPLFASGGAKFFWDTKFDMAMVAFLDCLQQFKEELEKGDSEFHLPYNMDSK-GKI 268
+ + LPLF GG F + K+D AMVAFLDC+QQFKEE EKG+ LPY + + G +
Sbjct: 326 DDRTELPLFCYGGQDVFLNNKYDRAMVAFLDCMQQFKEEAEKGELGLSLPYGIQVETGLM 385
Query: 269 ED-ETTGNTYSVKYQFNSQEQWTKALKFMLTNLKWGLAWVSSQFK 312
ED G YS++ N+QE WTKALKFML N KW L WV+S+++
Sbjct: 386 EDVGGRGECYSIRTHLNTQELWTKALKFMLINFKWSLIWVASRYQ 430
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Query: 13 PICSSQDI-DLESQANSLDHFVPAFKLVDSTNGSNGFCLLGKDESSNSKGHQMKVYANLF 71
P +++++ D E Q + P S +N F LLG+ + + K ++F
Sbjct: 45 PGVTTREVTDAEEQQDGASSRSPPGDGSVSKGHANIFTLLGELGAMHMLSSIQKAAGDIF 104
Query: 72 DFLSSNSGIDHPLCEECTDTLLDMMDKELKNTKQDFQEYSDFLKTLEL 119
D +S + +DHPLCEECTD+LL+ +D +L T+ D Q Y L+T EL
Sbjct: 105 DIVSGQAVVDHPLCEECTDSLLEQLDIQLALTEADSQNYQRCLETGEL 152
>sp|Q54JI9|BECNB_DICDI Beclin-1-like protein B OS=Dictyostelium discoideum GN=atg6B PE=3
SV=1
Length = 855
Score = 174 bits (440), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/194 (43%), Positives = 118/194 (60%), Gaps = 12/194 (6%)
Query: 119 LQLQYSLSQLNKFKSTNVFNATFHIWHSGHFGTINNFRLGTLPSAPVDWSEINAAWGQTA 178
+Q+Q+ L K TN+ N FH+WH GHFGTIN+ RLG LPS PV+W+EINAAWG
Sbjct: 621 VQIQWVNDHLESLKQTNILNDAFHLWHDGHFGTINSLRLGKLPSQPVEWNEINAAWGLAV 680
Query: 179 LLLTALARKLNLTFQRYRIVPYGNHSYIE--DTTEHKNLPLFASGG---AKFFWDTKFDM 233
LL A+A+KL FQ++ +VP G+ S ++ D L+ + + FW +FD
Sbjct: 681 SLLDAMAKKLKFKFQQFTLVPNGSCSRVDKRDVDPPLAYELYGTNDISLGRLFWYRRFDN 740
Query: 234 AMVAFLDCLQQFKEELEKGDSEFHLPYNMDSKGKIEDETTGNTYSVKYQFNSQEQWTKAL 293
M+AFL C+++ E + + D EF +PY KI+ E G +K QF + + WTK+L
Sbjct: 741 GMIAFLQCIKELCEHITEKDPEFSVPY------KIDKEYIGG-MCIKLQFTNDDTWTKSL 793
Query: 294 KFMLTNLKWGLAWV 307
KFMLTNLKW L W+
Sbjct: 794 KFMLTNLKWILIWI 807
>sp|P87117|YDKA_SCHPO Vacuolar protein sorting-associated protein atg6
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=atg6 PE=3 SV=4
Length = 464
Score = 141 bits (355), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 129/249 (51%), Gaps = 35/249 (14%)
Query: 92 LLDMMDKELKNTKQDFQEYSDFL-----KTLELQLQYSLS---------QLNKFKSTNVF 137
LL +D+E + + QE+ + L K L L+ QY + +L K + NVF
Sbjct: 219 LLRELDEEKEKVYAEEQEFYNNLNQFQIKKLSLERQYDCANLEFEHNSRKLEKLQKMNVF 278
Query: 138 NATFHIWH------SGHFGTINNFRLGTLPSAPVDWSEINAAWGQTALLLTALARKLNLT 191
+ F+I H G TIN RLG LPS V+W+EINAAWG T LLL L KL+
Sbjct: 279 SDIFYISHYSEPNGEGSIATINGLRLGRLPSQKVNWAEINAAWGMTVLLLDVLTEKLDFH 338
Query: 192 FQRYRIVPYGNHSYI--------EDTTEHKNLPLFASGGAKFFWDTKFDMAMVAFLDCLQ 243
Y++ P+G+ S+I + + L LF+SG K F + +FD MVAFLD L
Sbjct: 339 SSSYQLKPFGSQSFIIRFDRDPNGNQVKPTKLDLFSSGELKIFMNRRFDQGMVAFLDYLH 398
Query: 244 QFKEELEKGDSEFHLPYNMDSKGKIEDETTGNTYSVKYQFNSQEQWTKALKFMLTNLKWG 303
QF + LPY IE++ G ++ FN E WT+ALKF+LT++K+
Sbjct: 399 QFGDFCAAKTPSAVLPY------AIENDRIGGK-CIRLAFNQDENWTRALKFVLTDIKFL 451
Query: 304 LAWVSSQFK 312
A+VSSQ K
Sbjct: 452 EAYVSSQDK 460
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 63 QMKVYANLFDFLSSNSGIDHPLCEECTDTLLDMMDKELKNTKQDFQEYSDF 113
++++Y +FD LSS + +DHPLC EC + L + M K L+ K++ + Y ++
Sbjct: 121 KIEIYNRIFDLLSSKTKVDHPLCVECAELLTEEMSKTLRALKEEKKMYFNY 171
>sp|Q9M367|BECN1_ARATH Beclin-1-like protein OS=Arabidopsis thaliana GN=At3g61710 PE=2
SV=2
Length = 517
Score = 139 bits (350), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 108/191 (56%), Gaps = 9/191 (4%)
Query: 120 QLQYSLSQLNKFKSTNVFNATFHIWHSGHFGTINNFRLGTLPSAPVDWSEINAAWGQTAL 179
+++ S + L TNV F I + G FGTINNFRLG LP+ V+W EINAAWGQ L
Sbjct: 290 KIEVSQAHLELLNKTNVLIDAFPIRNDGEFGTINNFRLGRLPAIKVEWDEINAAWGQACL 349
Query: 180 LLTALARKLNLTFQ-RYRIVPYGNHSYIEDTTEHKNLPLFASGGAKFFWDTKFDMAMVAF 238
LL + FQ + +I P G++ I D+ ++ LF G FW T++D AM +
Sbjct: 350 LLHTMCNYFRPKFQCQVKIQPMGSYPRIVDSN-NETYELF--GPVNLFWSTRYDKAMTLY 406
Query: 239 LDCLQQFKEELEKGDSEFHLPYN--MDSKGKIE-DETTGNTYSVKYQFNSQEQWTKALKF 295
L CL+ F + D E ++P + ++ KIE D+ G YS+ FN QE WTKALK+
Sbjct: 407 LMCLKDFADFANSKDQENNIPPDNCLNLPYKIEKDKVLG--YSITQSFNKQESWTKALKY 464
Query: 296 MLTNLKWGLAW 306
L NLKW L W
Sbjct: 465 TLCNLKWALYW 475
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 30 DHFVPAFK--LVDSTNGSNGFCL-LGKDES--SNSKG--HQMKVYANLFDFLSSNSGIDH 82
+ FV +K V + GS+ L +G++ SN+ G + V FD + + ++
Sbjct: 110 ESFVVVYKSEPVSDSGGSHNLSLEVGQNGPLHSNTSGFNATINVLTRAFDIARTQTQVEQ 169
Query: 83 PLCEECTDTLLDMMDKELKNTKQDFQEYSDFLKTLELQLQYSLSQ 127
PLC EC L D ++KE+++ +D + Y ++ LE + Q LS+
Sbjct: 170 PLCLECMRVLSDKLEKEVEDVTRDVEAYEACVQRLEGETQDVLSE 214
>sp|Q02948|VPS30_YEAST Vacuolar protein sorting-associated protein 30 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS30 PE=1
SV=1
Length = 557
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 122/248 (49%), Gaps = 54/248 (21%)
Query: 109 EYSDFLKTLELQLQYSLSQLNKFKSTNVFNATFHIWHSGHFGTINNFRLGTLPSAPVDWS 168
+++ L++L+LQ + SL+QL+K + N+FNATF I HSG F TIN RLG++P + V W
Sbjct: 295 QFNKNLQSLKLQYELSLNQLDKLRKINIFNATFKISHSGPFATINGLRLGSIPESVVPWK 354
Query: 169 EINAAWGQTALLLTALARKLNLTFQRYRIVPYGNHSYIE----DTTEHKNLPLFASG--- 221
EINAA GQ LLL + + L + Y + P G+ S I+ ++ E+ N A G
Sbjct: 355 EINAALGQLILLLATINKNLKINLVDYELQPMGSFSKIKKRMVNSVEYNNSTTNAPGDWL 414
Query: 222 ------------GAKFFWDTKFDMAMVAFLDCLQQFKEEL-------------------- 249
G F +TKFD ++ L+ + + +L
Sbjct: 415 ILPVYYDENFNLGRIFRKETKFDKSLETTLEIISEITRQLSTIASSYSSQTLTTSQDESS 474
Query: 250 -------EKGDSEFHLPYNMDSKGKIEDETTGNTYSVKYQFNSQE-QWTKALKFMLTNLK 301
E S LPY M+ K KI N SVK +S +WT A+KF+LTN+K
Sbjct: 475 MNNANDVENSTSILELPYIMN-KDKI------NGLSVKLHGSSPNLEWTTAMKFLLTNVK 527
Query: 302 WGLAWVSS 309
W LA+ S+
Sbjct: 528 WLLAFSSN 535
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 63 QMKVYANLFDFLSSNSGIDHPLCEECTDTLLDMMDKELKNTKQDFQEYSDFLKTLELQLQ 122
Q+ N+F+ LSS + ID P+C++C + L++ + E + ++ Y+ FL LE Q
Sbjct: 160 QVNAMTNVFNILSSQTNIDFPICQDCCNILINRLKSEYDDAIKERDTYAQFLSKLESQ-N 218
Query: 123 YSLSQLNKFK 132
+S+ NK K
Sbjct: 219 KEISESNKEK 228
>sp|A5DIV5|BECN1_PICGU Autophagy-related protein 6 OS=Meyerozyma guilliermondii (strain
ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 /
NRRL Y-324) GN=ATG6 PE=2 SV=2
Length = 461
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 107/212 (50%), Gaps = 19/212 (8%)
Query: 107 FQEYSDFLKTLELQLQYSLSQLNKFKSTNVFNATFHIWHSGHFGTINNFRLGTLPSAPVD 166
Q +D L + + + L++L+ ++ N++ F I FG IN FRLG V
Sbjct: 260 LQRKADQLAQEKARYRVVLNRLDHLRNLNMYTKFFDIAADDQFGKINGFRLGY----KVP 315
Query: 167 WSEINAAWGQTALLLTALARKLNLTFQRYRIVPYGNHSYIED-TTEHKN----LPLFASG 221
WSE+N A GQ LL L ++L++ Q Y++VP G+ S I +++H L L++S
Sbjct: 316 WSEVNCALGQVVLLAVFLCKRLDVRLQSYKLVPMGSRSQIVKLSSDHDKSKTVLNLYSSN 375
Query: 222 G---AKFFWDTKFDMAMVAFLDCLQQFKEELEKGDSEFHLPYNMDSKGKIEDETTGNTYS 278
K F K D++M+A LD L Q + + DSE LPY + K +D G +
Sbjct: 376 ELSLGKLFNFNKLDVSMIALLDVLSQIEATVLALDSEIELPYTISPK---KDVIGGKSIR 432
Query: 279 VKYQFNSQEQWTKALKFMLTNLKWGLAWVSSQ 310
V S WT + KF+L N KW L + SS+
Sbjct: 433 V----TSNSDWTFSCKFLLVNFKWILTYASSR 460
Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 16 SSQDIDLESQANSLDHFVPAFKLVDSTNGSNGFCLLGKDESSNSKGHQMKVYANLFDFLS 75
SS D L ++ VP ++ ++G N ++ +FD LS
Sbjct: 87 SSPDASLVVNGGEIEEPVPVSAPSPESSEADG---------PNPISGRIHTLEKIFDILS 137
Query: 76 SNSGIDHPLCEECTDTLLDMMDKELKNTKQDFQEYSDFLKTLELQ 120
+ ++HP+C+EC + L++ + +++ Y FLK L+L+
Sbjct: 138 NKGEVNHPMCDECAELLIENYKLKFDQNQREKDSYMTFLKKLKLK 182
>sp|Q55CC5|BECNA_DICDI Beclin-1-like protein A OS=Dictyostelium discoideum GN=atg6A PE=3
SV=1
Length = 1368
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 108/222 (48%), Gaps = 30/222 (13%)
Query: 107 FQEYSDFLKTLEL---QLQYSLSQLNKFKSTNVFNATFHI------WHSGHFG------- 150
+QEY D + E+ Q+ QL + ++ TF I + G G
Sbjct: 1122 YQEYFDLKQEDEIYTNQINAIRDQLERVSQIDINKITFKIELPNTGVNGGIVGYNESSNT 1181
Query: 151 ---TINNFRLGTLPSAPVDWSEINAAWGQTALLLTALARKLNLTFQRYRIVPYGNHSYIE 207
+IN FRLGTL + VDW EIN+AWG+T+LLL LA +L FQ Y+++P + S I+
Sbjct: 1182 TISSINGFRLGTLSNLKVDWEEINSAWGETSLLLYVLASQLEFNFQNYKLIPMSSKSIIQ 1241
Query: 208 DTTEHKNLPLFASGGAK----FFW----DTKFDMAMVAFLDCLQQFKEELEKGDSEFHLP 259
+ + L+ + F W D +FD M AFL C+ ++ +
Sbjct: 1242 SKNDKMSYTLYGGDNIQFSRSFLWFGASDQRFDSGMEAFLSCVNDIATFVQSKKPSINFN 1301
Query: 260 YNMDSKGKIEDETTGNTYSVKYQFNSQEQWTKALKFMLTNLK 301
Y + SK KI D + S+K NS+ WT AL+FML+NLK
Sbjct: 1302 YRI-SKDKIGD--SNRLLSIKIAGNSELNWTMALRFMLSNLK 1340
>sp|Q55167|Y461_SYNY3 Uncharacterized protein sll0461 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0461 PE=3 SV=1
Length = 420
Score = 35.4 bits (80), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 181 LTALARKLNLTFQRYRIVPYGNHSYIEDTTEHKNLPLF--ASGGAKFFWDTKFDMAMV 236
L A +LNL ++PYG S++E ++ P+ A G +W +K D+ MV
Sbjct: 195 LVGNASQLNL------VIPYGRPSFVEQISQQCTPPVLKAAMGNCYLYWSSKGDLEMV 246
>sp|B3WEJ1|ADDA_LACCB ATP-dependent helicase/nuclease subunit A OS=Lactobacillus casei
(strain BL23) GN=addA PE=3 SV=1
Length = 1234
Score = 32.3 bits (72), Expect = 4.5, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 19/108 (17%)
Query: 160 LPSAPVDWSEINAAWGQTALLLTALARKLN--------LTFQRYRIVPYGNHSYIEDTTE 211
LP D ++ A GQT L+L + R +N Q YR + Y + + + T
Sbjct: 539 LPGDADDNEPVDIATGQTQLVLAEIQRLINDPDAQLWDRQAQEYRRIHYRDITLLTRQTS 598
Query: 212 HKNL----------PLFASGGAKFFWDTKFDMAMVAFLDCLQQFKEEL 249
+L PLF + FF T+ M M+A L + K+++
Sbjct: 599 QNSLIQTQFAAAGVPLFVADTKNFFKTTEL-MVMLALLKVIDNQKQDI 645
>sp|Q038V7|ADDA_LACC3 ATP-dependent helicase/nuclease subunit A OS=Lactobacillus casei
(strain ATCC 334) GN=addA PE=3 SV=1
Length = 1234
Score = 32.3 bits (72), Expect = 4.7, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 19/108 (17%)
Query: 160 LPSAPVDWSEINAAWGQTALLLTALARKLN--------LTFQRYRIVPYGNHSYIEDTTE 211
LP D ++ A GQT L+L + R +N Q YR + Y + + + T
Sbjct: 539 LPGDADDNEPVDIATGQTQLVLAEIQRLINDPDAQLWDRQAQEYRRIHYRDITLLTRQTS 598
Query: 212 HKNL----------PLFASGGAKFFWDTKFDMAMVAFLDCLQQFKEEL 249
+L PLF + FF T+ M M+A L + K+++
Sbjct: 599 QNSLIQTQFAAAGVPLFVADTKNFFKTTEL-MVMLALLKVIDNQKQDI 645
>sp|P44787|FMT_HAEIN Methionyl-tRNA formyltransferase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=fmt PE=3 SV=1
Length = 318
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 13/112 (11%)
Query: 47 GFCLLGKDESSNSKGHQMKVYANLFDFLSSNSGIDHPLCEECTDTLLDMMDKELKN---- 102
G ++ DE ++ KVY ++ +S S + + L E L+D++D L+N
Sbjct: 135 GVTIMQMDEGLDTGDMLHKVYCDILPTETSTS-LYNKLAELAPSALIDVLD-NLENGKFI 192
Query: 103 -TKQDFQE--YSDFLKTLELQLQYSLSQLNKFKSTNVFNATFHIWHSGHFGT 151
KQD + Y++ L E QL +SLS + ++ FN W +F T
Sbjct: 193 AEKQDGSQSNYAEKLSKEEAQLNWSLSAMQLERNIRAFNP----WPIAYFST 240
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,758,987
Number of Sequences: 539616
Number of extensions: 4877949
Number of successful extensions: 13186
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 13117
Number of HSP's gapped (non-prelim): 44
length of query: 318
length of database: 191,569,459
effective HSP length: 117
effective length of query: 201
effective length of database: 128,434,387
effective search space: 25815311787
effective search space used: 25815311787
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)