Query psy16001
Match_columns 318
No_of_seqs 153 out of 207
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 18:25:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16001.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16001hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2751|consensus 100.0 1.1E-92 2.3E-97 692.9 23.5 286 25-314 75-447 (447)
2 PF04111 APG6: Autophagy prote 100.0 2E-87 4.4E-92 641.4 13.9 224 83-313 1-314 (314)
3 PF10186 Atg14: UV radiation r 98.5 2.1E-06 4.7E-11 79.4 14.5 109 135-247 151-273 (302)
4 KOG2896|consensus 98.2 1.9E-05 4.1E-10 78.2 12.1 119 126-249 169-311 (377)
5 KOG2751|consensus 96.8 7.1E-05 1.5E-09 75.4 -4.2 216 60-311 77-389 (447)
6 PF15285 BH3: Beclin-1 BH3 dom 96.1 0.00063 1.4E-08 43.3 -1.6 22 56-77 4-25 (25)
7 PF11684 DUF3280: Protein of u 73.3 2.9 6.2E-05 36.7 2.6 57 241-299 71-137 (140)
8 PF13815 Dzip-like_N: Iguana/D 60.7 40 0.00086 28.3 6.9 42 85-126 74-115 (118)
9 smart00035 CLa CLUSTERIN alpha 52.1 59 0.0013 30.8 7.1 45 89-133 93-137 (216)
10 PF12325 TMF_TATA_bd: TATA ele 52.0 61 0.0013 27.8 6.7 44 90-133 15-58 (120)
11 PF06156 DUF972: Protein of un 42.2 73 0.0016 26.8 5.6 58 93-151 10-95 (107)
12 PHA03161 hypothetical protein; 39.0 91 0.002 28.0 6.0 73 89-164 59-146 (150)
13 PF04350 PilO: Pilus assembly 39.0 64 0.0014 26.7 4.9 73 94-199 2-77 (144)
14 COG4026 Uncharacterized protei 38.3 1.2E+02 0.0027 29.3 7.1 51 91-141 135-186 (290)
15 PF08581 Tup_N: Tup N-terminal 36.9 1.9E+02 0.004 23.2 6.9 28 90-117 3-30 (79)
16 COG2088 SpoVG Uncharacterized 36.2 44 0.00095 27.8 3.2 34 78-111 58-91 (95)
17 PF11932 DUF3450: Protein of u 35.7 1.3E+02 0.0029 28.0 6.9 28 131-160 165-192 (251)
18 PF10234 Cluap1: Clusterin-ass 35.5 3.1E+02 0.0068 26.7 9.5 75 56-130 121-208 (267)
19 PF05008 V-SNARE: Vesicle tran 34.6 1.2E+02 0.0026 23.1 5.4 39 89-127 37-76 (79)
20 COG3879 Uncharacterized protei 32.0 1.5E+02 0.0032 28.7 6.6 58 92-152 58-119 (247)
21 COG4985 ABC-type phosphate tra 31.4 2.7E+02 0.0059 27.2 8.1 44 118-174 227-270 (289)
22 cd00632 Prefoldin_beta Prefold 30.6 2.5E+02 0.0055 22.7 7.0 44 90-133 62-105 (105)
23 cd03331 Macro_Poa1p_like_SNF2 30.4 89 0.0019 27.6 4.5 48 213-263 83-130 (152)
24 PF02346 Vac_Fusion: Chordopox 26.1 3E+02 0.0064 20.9 6.2 41 94-134 4-44 (57)
25 smart00340 HALZ homeobox assoc 25.9 2.1E+02 0.0045 20.8 4.9 35 102-136 2-36 (44)
26 KOG2264|consensus 25.3 2E+02 0.0044 31.5 6.7 48 112-159 128-183 (907)
27 PF12958 DUF3847: Protein of u 24.5 2.1E+02 0.0045 23.4 5.3 33 93-125 3-35 (86)
28 PF10359 Fmp27_WPPW: RNA pol I 22.8 6E+02 0.013 26.3 9.6 115 4-134 108-229 (475)
29 KOG1500|consensus 22.7 56 0.0012 33.6 2.1 106 195-316 165-275 (517)
30 KOG4603|consensus 22.2 2.1E+02 0.0046 26.6 5.5 28 90-117 115-142 (201)
31 PF10613 Lig_chan-Glu_bd: Liga 21.6 69 0.0015 24.6 1.9 28 175-203 20-47 (65)
32 PRK13729 conjugal transfer pil 21.2 2.3E+02 0.0051 29.8 6.2 42 92-133 77-125 (475)
33 PF15643 Tox-PL-2: Papain fold 21.0 67 0.0015 27.1 1.9 16 83-98 19-34 (100)
34 KOG3800|consensus 20.9 52 0.0011 32.5 1.4 16 79-94 22-37 (300)
35 PF11932 DUF3450: Protein of u 20.3 3.3E+02 0.0071 25.4 6.6 27 237-263 220-248 (251)
36 PF06295 DUF1043: Protein of u 20.1 3.3E+02 0.0072 23.2 6.0 23 94-116 28-50 (128)
No 1
>KOG2751|consensus
Probab=100.00 E-value=1.1e-92 Score=692.89 Aligned_cols=286 Identities=55% Similarity=0.994 Sum_probs=273.8
Q ss_pred cccccCCcCCCccccccCCCCCceEEe---ecCCCCCCcchHHHHHHHHHHhhcCCCCCccCchHHHHHHHHHHHHHHHH
Q psy16001 25 QANSLDHFVPAFKLVDSTNGSNGFCLL---GKDESSNSKGHQMKVYANLFDFLSSNSGIDHPLCEECTDTLLDMMDKELK 101 (318)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~f~l~---~~~~~~~~ls~~~~~~~~lFdilS~~s~iDhPlC~eCtd~Lle~l~~~l~ 101 (318)
++++..+++||.|.+...+. .+|.+. +++..+.++|+++++++++|+|||++++||||+|+||+|.|++.||++++
T Consensus 75 ~~~~~~~~~~p~r~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~ 153 (447)
T KOG2751|consen 75 ESSVVVYFSPPVRDSDTEHN-LSFELGENGSDGSNTKTLSATINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVE 153 (447)
T ss_pred hccceecccCcccccccccc-cccccccccchhhhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHH
Confidence 45677799999999999988 789987 45667889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH----------------------------------------------------------------
Q psy16001 102 NTKQDFQEYSDFLKTL---------------------------------------------------------------- 117 (318)
Q Consensus 102 ~~~~E~~~Y~~~L~~l---------------------------------------------------------------- 117 (318)
.+++|+++|++|++.|
T Consensus 154 ~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~e 233 (447)
T KOG2751|consen 154 DAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWRE 233 (447)
T ss_pred HHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887
Q ss_pred ------------------HHHHHHHHHHHHHHHhcccCcceeeeeecCceeeeccccCCCCCCCCCChHHHHHHHHHHHH
Q psy16001 118 ------------------ELQLQYSLSQLNKFKSTNVFNATFHIWHSGHFGTINNFRLGTLPSAPVDWSEINAAWGQTAL 179 (318)
Q Consensus 118 ------------------e~q~~~~~~qLd~L~ktNv~n~~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~L 179 (318)
|+|++|++.||++|++|||||++|||||+|+|||||||||||+|.+||+|+||||||||++|
T Consensus 234 y~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ktNv~n~~F~I~~~G~fgtIN~FRLG~lp~~pVew~EINAA~GQ~vL 313 (447)
T KOG2751|consen 234 YNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTNVFNATFHIWHDGEFGTINNFRLGRLPSVPVEWDEINAAWGQTVL 313 (447)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhhhhhheeeEeecccccccccceeccccCCCcCHHHHHHHhhhHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcccccceeeecCCCceEEecCCC--ceEeccccCCCcccccccchHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy16001 180 LLTALARKLNLTFQRYRIVPYGNHSYIEDTTEH--KNLPLFASGGAKFFWDTKFDMAMVAFLDCLQQFKEELEKGDSEFH 257 (318)
Q Consensus 180 LL~~la~kl~~~f~~Y~LvP~GS~S~I~~~~~~--~~l~Ly~sg~~~~f~~~kFD~AM~afL~cl~q~~~~v~~~~~~~~ 257 (318)
||+++++|+|++|++|+||||||||||+++..+ +.+|+|++|+++|||++|||+||+|||+||+||.++++++++++.
T Consensus 314 LL~~l~~kig~~~~~y~lvp~GshSyI~~~~~~~~~el~l~~sgg~~~f~~tkfD~amvafLd~L~qf~~e~~~k~~~~~ 393 (447)
T KOG2751|consen 314 LLHTLANKIGLNFVRYRLVPMGSHSYIKKRMVNLPYELPLFQSGGLKFFWSTKFDKAMVAFLDCLKQFADELEKKDTSFN 393 (447)
T ss_pred HHHHHHHhcCcccceeeeecccchhHHHHhccCCCccchhhcCCCceeeeccccCHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 999999999999999999999999999998886 899999999999999999999999999999999999999999999
Q ss_pred CceeeccCCccccCCCCCceeEEecCCCcchHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy16001 258 LPYNMDSKGKIEDETTGNTYSVKYQFNSQEQWTKALKFMLTNLKWGLAWVSSQFKNQ 314 (318)
Q Consensus 258 LPY~I~~kdkI~D~~~g~~~SIr~~~nsee~WTkAlK~mLtNlKw~La~~s~~~~~~ 314 (318)
+||.|+ +|+|+|+. +.|+|++++|++++||+||||||||+||++||+|++++++
T Consensus 394 lPy~ie-~d~i~d~~--~~y~i~~~fN~De~WTrALkFmLTnlK~~~A~vss~~~~s 447 (447)
T KOG2751|consen 394 LPYDIE-KDKLNDPS--SSYSIKVQFNSDENWTRALKFMLTNLKWLLAWVSSLFSKS 447 (447)
T ss_pred Ccchhh-cccccCCc--cceeEEeeecchHHHHHHHHHHHhccHHHHHHHhhhhcCC
Confidence 999999 99999993 6899999999999999999999999999999999998653
No 2
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=100.00 E-value=2e-87 Score=641.43 Aligned_cols=224 Identities=58% Similarity=1.036 Sum_probs=153.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q psy16001 83 PLCEECTDTLLDMMDKELKNTKQDFQEYSDFLKTL--------------------------------------------- 117 (318)
Q Consensus 83 PlC~eCtd~Lle~l~~~l~~~~~E~~~Y~~~L~~l--------------------------------------------- 117 (318)
|||+||++.|+++|+.+++++++||++|..||+++
T Consensus 1 PlC~eC~~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el 80 (314)
T PF04111_consen 1 PLCQECTDLLLEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQEL 80 (314)
T ss_dssp -----------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999876
Q ss_pred --------------------------------------HHHHHHHHHHHHHHHhcccCcceeeeeecCceeeeccccCCC
Q psy16001 118 --------------------------------------ELQLQYSLSQLNKFKSTNVFNATFHIWHSGHFGTINNFRLGT 159 (318)
Q Consensus 118 --------------------------------------e~q~~~~~~qLd~L~ktNv~n~~F~I~hdG~fGTINGlRLGr 159 (318)
++|++++++||++|+||||||++|||||||+|||||||||||
T Consensus 81 ~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv~n~~F~I~hdG~fGTINGlRLGr 160 (314)
T PF04111_consen 81 EELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNVYNDTFHIWHDGPFGTINGLRLGR 160 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--TTTTT--EEEETTEEEETTEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhceeeEeecCCeeeECCeeecc
Confidence 478899999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHcCcccccceeeecCCCceEEecCC---CceEeccccCCC---cccccccchH
Q psy16001 160 LPSAPVDWSEINAAWGQTALLLTALARKLNLTFQRYRIVPYGNHSYIEDTTE---HKNLPLFASGGA---KFFWDTKFDM 233 (318)
Q Consensus 160 lp~~~V~W~EINAAwGQ~~LLL~~la~kl~~~f~~Y~LvP~GS~S~I~~~~~---~~~l~Ly~sg~~---~~f~~~kFD~ 233 (318)
+|++||+|+||||||||+||||++||+++|++|++|+|+||||+|+|++..+ +.+||||++|++ ++|++++||.
T Consensus 161 l~~~~V~W~EINAA~Gq~~LLL~~la~~l~~~f~~y~l~P~Gs~S~I~~~~~~~~~~~~~ly~~~~~~~~~~f~~~~Fd~ 240 (314)
T PF04111_consen 161 LPNVPVEWNEINAAWGQTALLLQTLAKKLNFKFQRYRLVPMGSFSKIEKLEGDKDKTTYPLYSSGSFSLGRLFSSRKFDK 240 (314)
T ss_dssp BTTB---HHHHHHHHHHHHHHHHHHHHHCT---SSEEEE--GGG-EEEECS---TCEEEESS--SS----GGG--SHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCcccceeEecCCCCEEEEeccCCCCeEEecccCCCchhhhhhhhcchHH
Confidence 9999999999999999999999999999999999999999999999999984 489999999998 8999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCC-CCCCceeeccCCccccCCCCCceeEEecCCCcchHHHHHHHHHHHHHHHHHHHhhhcc
Q psy16001 234 AMVAFLDCLQQFKEELEKGDS-EFHLPYNMDSKGKIEDETTGNTYSVKYQFNSQEQWTKALKFMLTNLKWGLAWVSSQFK 312 (318)
Q Consensus 234 AM~afL~cl~q~~~~v~~~~~-~~~LPY~I~~kdkI~D~~~g~~~SIr~~~nsee~WTkAlK~mLtNlKw~La~~s~~~~ 312 (318)
||+|||+||+|+++++++.++ +++|||+|+ ||||+ |.||++++|++++||+||||||||+||+++|+|++++
T Consensus 241 am~~~L~~~~q~~~~~~~~~~~~~~lPy~i~-~~~I~------~~si~~~~~~~~~WT~AlK~lLtnlKw~l~~~s~~~~ 313 (314)
T PF04111_consen 241 AMVAFLDCLQQLAEFVEKRDPQSFELPYKID-KDKIG------GVSIKLQFNSEEEWTKALKYLLTNLKWLLAWVSSQLS 313 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----SS-EC-TTEEC------TCES-STTS-HHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccceecc-CCccC------CeeeeecCCChhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999998 899999999 99995 4699999999999999999999999999999999975
Q ss_pred c
Q psy16001 313 N 313 (318)
Q Consensus 313 ~ 313 (318)
+
T Consensus 314 ~ 314 (314)
T PF04111_consen 314 Q 314 (314)
T ss_dssp -
T ss_pred C
Confidence 3
No 3
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=98.54 E-value=2.1e-06 Score=79.44 Aligned_cols=109 Identities=25% Similarity=0.306 Sum_probs=80.9
Q ss_pred ccCcceeeeee-----------cCceeeeccccCCCCCC-CCCChHHHHHHHHHHHHHHHHHHHHcCcccccceeeecCC
Q psy16001 135 NVFNATFHIWH-----------SGHFGTINNFRLGTLPS-APVDWSEINAAWGQTALLLTALARKLNLTFQRYRIVPYGN 202 (318)
Q Consensus 135 Nv~n~~F~I~h-----------dG~fGTINGlRLGrlp~-~~V~W~EINAAwGQ~~LLL~~la~kl~~~f~~Y~LvP~GS 202 (318)
.-....|.|.. .+.|. |.|+.|-...+ ...+=.+|+||+|+++.|+..+|..+++.+ .|++.|+||
T Consensus 151 ~~l~~ifpI~~~~~~~~~~~~~~~~~~-I~~~~lp~~~~~~~~~~~~isaALgyvahlv~lls~yL~v~L-py~i~~~gs 228 (302)
T PF10186_consen 151 QELSEIFPIEQVSSPRRPSDSSSSEYT-ICGLPLPNSRDFNSLPDEEISAALGYVAHLVSLLSRYLGVPL-PYPITPSGS 228 (302)
T ss_pred HHHHHHhCceeecccccCCCCCCCCee-ecCcccCCCcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCcccCcc
Confidence 34566899932 45676 99998876543 456668999999999999999999999997 799999999
Q ss_pred CceEEecCC--CceEeccccCCCcccccccchHHHHHHHHHHHHHHH
Q psy16001 203 HSYIEDTTE--HKNLPLFASGGAKFFWDTKFDMAMVAFLDCLQQFKE 247 (318)
Q Consensus 203 ~S~I~~~~~--~~~l~Ly~sg~~~~f~~~kFD~AM~afL~cl~q~~~ 247 (318)
+|+|.+..+ ...++.+..+. --...+|..|+..+..-+.|++.
T Consensus 229 ~s~i~d~~~~~~~~~~~~~~~~--~~~~~~f~~~v~lLn~nI~~L~~ 273 (302)
T PF10186_consen 229 RSTIIDFSPSIDRPLPSLSYES--GVDRQRFEYAVFLLNKNIAQLCF 273 (302)
T ss_pred ccchhhcccccCCcchhhhccc--cccHHHHHHHHHHHHHHHHHHHH
Confidence 999887211 12333222111 11246899999999999999997
No 4
>KOG2896|consensus
Probab=98.18 E-value=1.9e-05 Score=78.15 Aligned_cols=119 Identities=23% Similarity=0.369 Sum_probs=84.6
Q ss_pred HHHHHHHhcccCc---ceeeeeecC-cee--------------eeccccCCCCCCCC-CChHHHHHHHHHHHHHHHHHHH
Q psy16001 126 SQLNKFKSTNVFN---ATFHIWHSG-HFG--------------TINNFRLGTLPSAP-VDWSEINAAWGQTALLLTALAR 186 (318)
Q Consensus 126 ~qLd~L~ktNv~n---~~F~I~hdG-~fG--------------TINGlRLGrlp~~~-V~W~EINAAwGQ~~LLL~~la~ 186 (318)
..|...++++.-- ++|.|..+| +.- ||-|++|--.++.. =+=.|+-||+|.+|.|++.||+
T Consensus 169 ~~l~a~re~fL~~~~~~~~~irq~~~~~s~i~~l~~~~~~~v~tIrGl~lp~~~d~~~~s~~~~aaALGylaHLv~~Is~ 248 (377)
T KOG2896|consen 169 NELVAKRELFLEQRIQDTFKIRQDGSPLSKILPLQFSYCHLVFTIRGLKLPFIEDKQNKSEQETAAALGYLAHLVSMISK 248 (377)
T ss_pred HHHHHHHHhhHhHHHhhhhhhhccCcchheeecCCcccchhhhhhhcccCCchhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 4444555555432 589999886 333 45555554444321 1467899999999999999999
Q ss_pred HcCcccccceeeecCCCceEEecCCC--c---eEeccccCCCcccccccchHHHHHHHHHHHHHHHHH
Q psy16001 187 KLNLTFQRYRIVPYGNHSYIEDTTEH--K---NLPLFASGGAKFFWDTKFDMAMVAFLDCLQQFKEEL 249 (318)
Q Consensus 187 kl~~~f~~Y~LvP~GS~S~I~~~~~~--~---~l~Ly~sg~~~~f~~~kFD~AM~afL~cl~q~~~~v 249 (318)
.+.+.. +|.|++.||.|+|.+..++ . ++|||.-+.- ..+|+.||--+-.-+.|+..-+
T Consensus 249 ~L~~pL-RYPIl~~~Sks~I~D~i~~~~~ttr~fply~k~~~----~e~f~~glylL~qNiaqlr~~~ 311 (377)
T KOG2896|consen 249 YLEVPL-RYPILLAGSKSYIRDYIPDIETTTREFPLYTKSQE----IEQFEYGLYLLNQNIAQLRYDC 311 (377)
T ss_pred Hhcccc-ccccccccccceecccCCccccccccccCccccch----HHHHHHHHHHHhccHHHHHHHc
Confidence 999996 8999999999999976554 2 3889865543 3567888877777777776654
No 5
>KOG2751|consensus
Probab=96.83 E-value=7.1e-05 Score=75.44 Aligned_cols=216 Identities=10% Similarity=-0.037 Sum_probs=145.4
Q ss_pred cchHHHHHHHHHHhhcCCCCCccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH----H-------
Q psy16001 60 KGHQMKVYANLFDFLSSNSGIDHPLCEECTDTLLDMMDKELKNTKQDFQEYSD----------FLKTL----E------- 118 (318)
Q Consensus 60 ls~~~~~~~~lFdilS~~s~iDhPlC~eCtd~Lle~l~~~l~~~~~E~~~Y~~----------~L~~l----e------- 118 (318)
.+.....-...++-.++++.+|||.|..|...+...+-+=...+..+.-.|.+ |.+.+ +
T Consensus 77 ~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~~~ 156 (447)
T KOG2751|consen 77 SVVVYFSPPVRDSDTEHNLSFELGENGSDGSNTKTLSATINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVEDAE 156 (447)
T ss_pred cceecccCcccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 44445556678889999999999999999998877766544444444333332 22222 1
Q ss_pred ----------HHHHH------------H---------------------------------HHHHHHHHhcccCcceee-
Q psy16001 119 ----------LQLQY------------S---------------------------------LSQLNKFKSTNVFNATFH- 142 (318)
Q Consensus 119 ----------~q~~~------------~---------------------------------~~qLd~L~ktNv~n~~F~- 142 (318)
..++. . ....+...+.++|.+-|.
T Consensus 157 ~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~ 236 (447)
T KOG2751|consen 157 DEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNN 236 (447)
T ss_pred HHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11110 0 011224556677777775
Q ss_pred -----eeecCceeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCcccccceeeecCCCceEEecCC------
Q psy16001 143 -----IWHSGHFGTINNFRLGTLPSAPVDWSEINAAWGQTALLLTALARKLNLTFQRYRIVPYGNHSYIEDTTE------ 211 (318)
Q Consensus 143 -----I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~~la~kl~~~f~~Y~LvP~GS~S~I~~~~~------ 211 (318)
|-|+|...+|++.|.|+++...+-|.+++++||-.+.+.-.++.+.||.+-+|..+|.|..+.+....-
T Consensus 237 ~~~q~~~~~del~Sle~q~~~s~~qldkL~ktNv~n~~F~I~~~G~fgtIN~FRLG~lp~~pVew~EINAA~GQ~vLLL~ 316 (447)
T KOG2751|consen 237 FQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTNVFNATFHIWHDGEFGTINNFRLGRLPSVPVEWDEINAAWGQTVLLLH 316 (447)
T ss_pred HHHhhhcccchHHHHHHHHHHHHHHHHHHHhhhhhhheeeEeecccccccccceeccccCCCcCHHHHHHHhhhHHHHHH
Confidence 557899999999999999999999999999999999999999999999999999999998886654321
Q ss_pred --------C-ceEeccccCCCcccccccchHHHHHHHHHHHHHHHHHhcCCCCCCCceeeccCCccccCCCCCceeEEec
Q psy16001 212 --------H-KNLPLFASGGAKFFWDTKFDMAMVAFLDCLQQFKEELEKGDSEFHLPYNMDSKGKIEDETTGNTYSVKYQ 282 (318)
Q Consensus 212 --------~-~~l~Ly~sg~~~~f~~~kFD~AM~afL~cl~q~~~~v~~~~~~~~LPY~I~~kdkI~D~~~g~~~SIr~~ 282 (318)
+ ..|.|-.-|+++ ++++++. .+||.-.. . .+||..+..
T Consensus 317 ~l~~kig~~~~~y~lvp~GshS-----------------------yI~~~~~--~~~~el~l---~----~sgg~~~f~- 363 (447)
T KOG2751|consen 317 TLANKIGLNFVRYRLVPMGSHS-----------------------YIKKRMV--NLPYELPL---F----QSGGLKFFW- 363 (447)
T ss_pred HHHHhcCcccceeeeecccchh-----------------------HHHHhcc--CCCccchh---h----cCCCceeee-
Confidence 0 233332223322 1222221 26665441 1 123444432
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhhhc
Q psy16001 283 FNSQEQWTKALKFMLTNLKWGLAWVSSQF 311 (318)
Q Consensus 283 ~nsee~WTkAlK~mLtNlKw~La~~s~~~ 311 (318)
++ ..-+||--.|-.|+...-.++++.
T Consensus 364 -~t--kfD~amvafLd~L~qf~~e~~~k~ 389 (447)
T KOG2751|consen 364 -ST--KFDKAMVAFLDCLKQFADELEKKD 389 (447)
T ss_pred -cc--ccCHHHHHHHHHHHHHHHHHHhcC
Confidence 32 477999999999999999988774
No 6
>PF15285 BH3: Beclin-1 BH3 domain, Bcl-2-interacting; PDB: 3BL2_C 2P1L_H 3DVU_C 2PON_A.
Probab=96.12 E-value=0.00063 Score=43.33 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=18.2
Q ss_pred CCCCcchHHHHHHHHHHhhcCC
Q psy16001 56 SSNSKGHQMKVYANLFDFLSSN 77 (318)
Q Consensus 56 ~~~~ls~~~~~~~~lFdilS~~ 77 (318)
.+.++|+|++++..+|||+|++
T Consensus 4 ~~e~ls~rlkvtg~lfdimsGq 25 (25)
T PF15285_consen 4 TMENLSRRLKVTGDLFDIMSGQ 25 (25)
T ss_dssp HHHHHHHHHHHHHHHHCCTT--
T ss_pred cccccchhheecccccccccCC
Confidence 4567999999999999999985
No 7
>PF11684 DUF3280: Protein of unknown function (DUF2380); InterPro: IPR021698 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=73.27 E-value=2.9 Score=36.72 Aligned_cols=57 Identities=26% Similarity=0.457 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcC-------CCCCCCceeeccCCccccCCCC---CceeEEecCCCcchHHHHHHHHHHH
Q psy16001 241 CLQQFKEELEKG-------DSEFHLPYNMDSKGKIEDETTG---NTYSVKYQFNSQEQWTKALKFMLTN 299 (318)
Q Consensus 241 cl~q~~~~v~~~-------~~~~~LPY~I~~kdkI~D~~~g---~~~SIr~~~nsee~WTkAlK~mLtN 299 (318)
|..+++..+-.. ...-.|-+.|. -.|.|..+| .++|+-+-+|++|.|.++++||+.|
T Consensus 71 C~~~~Ar~~GAd~~lvG~VqKvS~Lil~~~--~~v~Dv~tg~~v~~~~~diRgntD~sW~Rg~~~l~~n 137 (140)
T PF11684_consen 71 CEARIARELGADYVLVGEVQKVSNLILNMN--VYVRDVETGKVVRGRSVDIRGNTDESWRRGARYLVKN 137 (140)
T ss_pred HHHHHHHHcCCCEEEEEEEechhhhheeee--EEEEECCCCCEEeeeeeeEecCcHHHHHHHHHHHHHh
Confidence 778888775421 01123333332 122333332 3567778899999999999999887
No 8
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=60.68 E-value=40 Score=28.25 Aligned_cols=42 Identities=17% Similarity=0.364 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16001 85 CEECTDTLLDMMDKELKNTKQDFQEYSDFLKTLELQLQYSLS 126 (318)
Q Consensus 85 C~eCtd~Lle~l~~~l~~~~~E~~~Y~~~L~~le~q~~~~~~ 126 (318)
|++|-..-++.++.++..+..+++.++..+++.++++...+.
T Consensus 74 ~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 74 CQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999988888877665554433
No 9
>smart00035 CLa CLUSTERIN alpha chain.
Probab=52.14 E-value=59 Score=30.81 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16001 89 TDTLLDMMDKELKNTKQDFQEYSDFLKTLELQLQYSLSQLNKFKS 133 (318)
Q Consensus 89 td~Lle~l~~~l~~~~~E~~~Y~~~L~~le~q~~~~~~qLd~L~k 133 (318)
...|-++|+.-|..+++=.+.|.+.|+..+.++..+..-|++|++
T Consensus 93 q~~Lr~El~eAL~LaE~ftqqYd~lL~~~q~~m~nTs~Lle~ln~ 137 (216)
T smart00035 93 QPQLRQELDESLQLAERFTQQYDQLLQSYQKKMLNTSSLLEQLNE 137 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 457888899999999999999999999998888888888888865
No 10
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=52.00 E-value=61 Score=27.80 Aligned_cols=44 Identities=14% Similarity=0.219 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16001 90 DTLLDMMDKELKNTKQDFQEYSDFLKTLELQLQYSLSQLNKFKS 133 (318)
Q Consensus 90 d~Lle~l~~~l~~~~~E~~~Y~~~L~~le~q~~~~~~qLd~L~k 133 (318)
-.+++.|..++...+.|...++.-+.+++.+-+.+..++-+|-+
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~ 58 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLME 58 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999988885555555554444433
No 11
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=42.24 E-value=73 Score=26.76 Aligned_cols=58 Identities=22% Similarity=0.472 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HH-----HHHHHHHHHHHHHh---------------------cccCcceeeee
Q psy16001 93 LDMMDKELKNTKQDFQEYSDFLKTL--EL-----QLQYSLSQLNKFKS---------------------TNVFNATFHIW 144 (318)
Q Consensus 93 le~l~~~l~~~~~E~~~Y~~~L~~l--e~-----q~~~~~~qLd~L~k---------------------tNv~n~~F~I~ 144 (318)
+.+|++++..+..+-..-+..+..+ || .-++.+..|+.+.+ -.+|++=|||.
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~~~~~~~~~~~~~~~~~g~~NL~~LY~EGFHIC 89 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQEEEEKEEKKTKKKLGEGRDNLARLYQEGFHIC 89 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHHHhcCeeeC
Confidence 4567777777777777777666666 21 11223333433322 24799999997
Q ss_pred ecCceee
Q psy16001 145 HSGHFGT 151 (318)
Q Consensus 145 hdG~fGT 151 (318)
+ -.||.
T Consensus 90 n-~~yG~ 95 (107)
T PF06156_consen 90 N-VHYGS 95 (107)
T ss_pred c-HHhCC
Confidence 7 66765
No 12
>PHA03161 hypothetical protein; Provisional
Probab=39.03 E-value=91 Score=28.04 Aligned_cols=73 Identities=16% Similarity=0.291 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH-HHHhcccCcceeeeeecCcee-------eec
Q psy16001 89 TDTLLDMMDKELKNTKQDFQEYSDFL-------KTLELQLQYSLSQLN-KFKSTNVFNATFHIWHSGHFG-------TIN 153 (318)
Q Consensus 89 td~Lle~l~~~l~~~~~E~~~Y~~~L-------~~le~q~~~~~~qLd-~L~ktNv~n~~F~I~hdG~fG-------TIN 153 (318)
-+.++..++.+++.-++|......|= +.|..++.-+...|+ .|...+.+-+- .|+...| ||=
T Consensus 59 i~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eLkeel~~ELe~l~~~q~~---~~~~~~~~~~~~~dtI~ 135 (150)
T PHA03161 59 IEGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILELKEDIHFEIEALNHGQPS---SQEEENSSENSIPDTIM 135 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc---cCCCCCCccCchhhHHH
Confidence 35678888899999999988877652 222233333333222 22233333222 4554444 788
Q ss_pred cccCCCCCCCC
Q psy16001 154 NFRLGTLPSAP 164 (318)
Q Consensus 154 GlRLGrlp~~~ 164 (318)
-.||+++|.+|
T Consensus 136 ~WRLE~lPrcP 146 (150)
T PHA03161 136 QWRIEALPRVP 146 (150)
T ss_pred HHHHhhCCCCC
Confidence 89999999966
No 13
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=38.96 E-value=64 Score=26.72 Aligned_cols=73 Identities=19% Similarity=0.282 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccCcceeeeeecCceeeeccccCCCCCCCCCChHHH
Q psy16001 94 DMMDKELKNTKQDFQEYSDFLKTL---ELQLQYSLSQLNKFKSTNVFNATFHIWHSGHFGTINNFRLGTLPSAPVDWSEI 170 (318)
Q Consensus 94 e~l~~~l~~~~~E~~~Y~~~L~~l---e~q~~~~~~qLd~L~ktNv~n~~F~I~hdG~fGTINGlRLGrlp~~~V~W~EI 170 (318)
+..+.+...+++|.+.+.....++ +.++...+.+++.+++ ++|.. .|+
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~-------------------------~lP~~----~~~ 52 (144)
T PF04350_consen 2 KTLQAQIQQLQQELAQLKEKVANLEELKKQLEQLEQQLEELLK-------------------------KLPAE----EEI 52 (144)
T ss_dssp ----------HHHHHHTGGG-SSHHHHHHHHHHHHHHHHHHHH-------------------------CTTGG----GHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------------------------hCCCc----hhH
Confidence 455667777777776666544433 5677777788887776 45542 233
Q ss_pred HHHHHHHHHHHHHHHHHcCcccccceeee
Q psy16001 171 NAAWGQTALLLTALARKLNLTFQRYRIVP 199 (318)
Q Consensus 171 NAAwGQ~~LLL~~la~kl~~~f~~Y~LvP 199 (318)
+...--|..+|+..|+++.++...+
T Consensus 53 ----~~ll~~l~~~A~~~gv~l~~~~p~~ 77 (144)
T PF04350_consen 53 ----PSLLEDLNRLAKKSGVKLTSFEPGE 77 (144)
T ss_dssp ----HHHHHHHHHHHHHTT-EEEEEEE--
T ss_pred ----HHHHHHHHHHHHHCCCeEEEeecCc
Confidence 4455668899999999998776443
No 14
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=38.35 E-value=1.2e+02 Score=29.31 Aligned_cols=51 Identities=14% Similarity=0.246 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-Cccee
Q psy16001 91 TLLDMMDKELKNTKQDFQEYSDFLKTLELQLQYSLSQLNKFKSTNV-FNATF 141 (318)
Q Consensus 91 ~Lle~l~~~l~~~~~E~~~Y~~~L~~le~q~~~~~~qLd~L~ktNv-~n~~F 141 (318)
...+.++.+++++++|+.....-++.+|..++..|..|.+|+.-|. ++..|
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~ 186 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEML 186 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888888888888899999999998887664 34444
No 15
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=36.93 E-value=1.9e+02 Score=23.18 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16001 90 DTLLDMMDKELKNTKQDFQEYSDFLKTL 117 (318)
Q Consensus 90 d~Lle~l~~~l~~~~~E~~~Y~~~L~~l 117 (318)
+-|++.++.+++....|-..|+.--+..
T Consensus 3 ~elLd~ir~Ef~~~~~e~~~~k~~~~e~ 30 (79)
T PF08581_consen 3 NELLDAIRQEFENLSQEANSYKHQKDEY 30 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4578889999998888666665543333
No 16
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=36.18 E-value=44 Score=27.78 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=28.5
Q ss_pred CCCccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16001 78 SGIDHPLCEECTDTLLDMMDKELKNTKQDFQEYS 111 (318)
Q Consensus 78 s~iDhPlC~eCtd~Lle~l~~~l~~~~~E~~~Y~ 111 (318)
.+|-||+|.+--+.+-+..-++++.+..|.+++.
T Consensus 58 rDI~HPI~~~~R~kIq~aVl~~Y~~~~~e~~~~~ 91 (95)
T COG2088 58 RDIAHPINSDTREKIQDAVLKEYERLDEEAEAVS 91 (95)
T ss_pred hhccCcCCHHHHHHHHHHHHHHHHHhchhhhhhh
Confidence 4788999999999999998888888877766654
No 17
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=35.71 E-value=1.3e+02 Score=27.98 Aligned_cols=28 Identities=21% Similarity=0.462 Sum_probs=20.9
Q ss_pred HHhcccCcceeeeeecCceeeeccccCCCC
Q psy16001 131 FKSTNVFNATFHIWHSGHFGTINNFRLGTL 160 (318)
Q Consensus 131 L~ktNv~n~~F~I~hdG~fGTINGlRLGrl 160 (318)
=+...+|..+..| ||.=-+.+=|||||+
T Consensus 165 g~~i~~~~~~i~~--dG~~~~V~~LrlGr~ 192 (251)
T PF11932_consen 165 GRTIEVYQGTITL--DGEERQVDFLRLGRV 192 (251)
T ss_pred CCceeEEEEEEeE--CCeEEEEEEEeecch
Confidence 3445556666555 898889999999996
No 18
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=35.48 E-value=3.1e+02 Score=26.72 Aligned_cols=75 Identities=15% Similarity=0.282 Sum_probs=47.7
Q ss_pred CCCCcchHH-HHHHHHHHhhcCC------------CCCccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16001 56 SSNSKGHQM-KVYANLFDFLSSN------------SGIDHPLCEECTDTLLDMMDKELKNTKQDFQEYSDFLKTLELQLQ 122 (318)
Q Consensus 56 ~~~~ls~~~-~~~~~lFdilS~~------------s~iDhPlC~eCtd~Lle~l~~~l~~~~~E~~~Y~~~L~~le~q~~ 122 (318)
..+.|++.+ ..-+.|+|.|+-. ..+|..-=+.|....+..+..+++++++...+-..=...|+.+++
T Consensus 121 ~~R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIe 200 (267)
T PF10234_consen 121 AARQLASEITQRGASLYDLLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIE 200 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566554 4456788887652 223333367788888888888888888888777776666655554
Q ss_pred HHHHHHHH
Q psy16001 123 YSLSQLNK 130 (318)
Q Consensus 123 ~~~~qLd~ 130 (318)
.-..+|||
T Consensus 201 kkk~ELER 208 (267)
T PF10234_consen 201 KKKQELER 208 (267)
T ss_pred HHHHHHHH
Confidence 44444443
No 19
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=34.55 E-value=1.2e+02 Score=23.05 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy16001 89 TDTLLDMMDKELKNTK-QDFQEYSDFLKTLELQLQYSLSQ 127 (318)
Q Consensus 89 td~Lle~l~~~l~~~~-~E~~~Y~~~L~~le~q~~~~~~q 127 (318)
++.++++|+-++..+- .++..|..-++...+.+...+.+
T Consensus 37 a~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~ 76 (79)
T PF05008_consen 37 AEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKE 76 (79)
T ss_dssp HHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667776666654 55555555554433333333333
No 20
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.96 E-value=1.5e+02 Score=28.70 Aligned_cols=58 Identities=14% Similarity=0.191 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcccCcceeeeeecCceeee
Q psy16001 92 LLDMMDKELKNTKQDFQEYSDFLKTLELQLQY----SLSQLNKFKSTNVFNATFHIWHSGHFGTI 152 (318)
Q Consensus 92 Lle~l~~~l~~~~~E~~~Y~~~L~~le~q~~~----~~~qLd~L~ktNv~n~~F~I~hdG~fGTI 152 (318)
.+..++++..++..|+..|..++++....-.- .+++|++|+.+ -.+=.+.=.|-.=||
T Consensus 58 e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~---aG~v~V~G~Gl~ITi 119 (247)
T COG3879 58 ELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRML---AGSVPVTGPGLVITI 119 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH---hccCCCcCCcEEEEe
Confidence 45677889999999999999999987522122 23445555554 343333333444444
No 21
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=31.43 E-value=2.7e+02 Score=27.18 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhcccCcceeeeeecCceeeeccccCCCCCCCCCChHHHHHHH
Q psy16001 118 ELQLQYSLSQLNKFKSTNVFNATFHIWHSGHFGTINNFRLGTLPSAPVDWSEINAAW 174 (318)
Q Consensus 118 e~q~~~~~~qLd~L~ktNv~n~~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAw 174 (318)
+.++...+.+|+.|+. -++.-|-.+.|-. |+. ++|+-+|||-||
T Consensus 227 q~r~~~l~~~L~~L~~--e~~r~~l~~~Dm~---------G~~--~~vpLsei~~aw 270 (289)
T COG4985 227 QKRLAQLQTELDALRA--ELERQFLYLVDMQ---------GET--VSVPLSEILDAW 270 (289)
T ss_pred HHHHHHHHHHHHHHhh--hhhhceEEEEccC---------CCE--eeccHHHHHHhh
Confidence 3444555677887765 3666777777632 222 679999999998
No 22
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=30.55 E-value=2.5e+02 Score=22.71 Aligned_cols=44 Identities=7% Similarity=0.113 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16001 90 DTLLDMMDKELKNTKQDFQEYSDFLKTLELQLQYSLSQLNKFKS 133 (318)
Q Consensus 90 d~Lle~l~~~l~~~~~E~~~Y~~~L~~le~q~~~~~~qLd~L~k 133 (318)
+-+.+.++.+++..+.+.+.+..-++.++.++.-.+.+|..+.|
T Consensus 62 ~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~~ 105 (105)
T cd00632 62 EEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQK 105 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 55667778888888888888777777777777777777776653
No 23
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven
Probab=30.41 E-value=89 Score=27.63 Aligned_cols=48 Identities=15% Similarity=0.143 Sum_probs=35.0
Q ss_pred ceEeccccCCCcccccccchHHHHHHHHHHHHHHHHHhcCCCCCCCceeec
Q psy16001 213 KNLPLFASGGAKFFWDTKFDMAMVAFLDCLQQFKEELEKGDSEFHLPYNMD 263 (318)
Q Consensus 213 ~~l~Ly~sg~~~~f~~~kFD~AM~afL~cl~q~~~~v~~~~~~~~LPY~I~ 263 (318)
-+-.||.....+- ...=..++.|+-.||+++...++..+..+.+| +|.
T Consensus 83 ~va~l~~q~~~~~--~~~~~~~~~aL~~~L~~~~~~a~~~~~sVhmP-rIg 130 (152)
T cd03331 83 WVALIVAQHRDKS--NPLSGIKLSALEKGLKKIYFAAKQKSASVHLP-RIG 130 (152)
T ss_pred EEEEEEeEccCCC--CCCCccCHHHHHHHHHHHHHHHHcCCCEEEeC-CCC
Confidence 4557776543321 12236888999999999999887777789999 887
No 24
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=26.10 E-value=3e+02 Score=20.95 Aligned_cols=41 Identities=10% Similarity=0.140 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16001 94 DMMDKELKNTKQDFQEYSDFLKTLELQLQYSLSQLNKFKST 134 (318)
Q Consensus 94 e~l~~~l~~~~~E~~~Y~~~L~~le~q~~~~~~qLd~L~kt 134 (318)
+.++.++..+++.-..+..+-+..++.+.....|+|-||+.
T Consensus 4 k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~ 44 (57)
T PF02346_consen 4 KDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKY 44 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 34555555566655555555555555555556666666653
No 25
>smart00340 HALZ homeobox associated leucin zipper.
Probab=25.92 E-value=2.1e+02 Score=20.79 Aligned_cols=35 Identities=9% Similarity=0.138 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16001 102 NTKQDFQEYSDFLKTLELQLQYSLSQLNKFKSTNV 136 (318)
Q Consensus 102 ~~~~E~~~Y~~~L~~le~q~~~~~~qLd~L~ktNv 136 (318)
+++-||+.-++|-++|...-+..+.++..||...+
T Consensus 2 QTEvdCe~LKrcce~LteeNrRL~ke~~eLralk~ 36 (44)
T smart00340 2 QTEVDCELLKRCCESLTEENRRLQKEVQELRALKL 36 (44)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 57788888888888885444556666666666554
No 26
>KOG2264|consensus
Probab=25.29 E-value=2e+02 Score=31.48 Aligned_cols=48 Identities=17% Similarity=0.071 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcceeeeee--------cCceeeeccccCCC
Q psy16001 112 DFLKTLELQLQYSLSQLNKFKSTNVFNATFHIWH--------SGHFGTINNFRLGT 159 (318)
Q Consensus 112 ~~L~~le~q~~~~~~qLd~L~ktNv~n~~F~I~h--------dG~fGTINGlRLGr 159 (318)
.-|..|+..+++||.+++.|+.+|-=.-.-.++. -.+-..|.+.||-.
T Consensus 128 ~eL~~Lk~~ieqaq~~~~El~~~n~pkl~LP~sllP~~~pr~l~pp~~~~~c~lhn 183 (907)
T KOG2264|consen 128 LELSALKGEIEQAQRQLEELRETNNPKLFLPFSLLPLQIPRELEPPSQISPCQLHN 183 (907)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhcCCceeeccccCcccCcccCCCccccCcccchh
Confidence 3344447788999999999999998888777772 13445677776643
No 27
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=24.48 E-value=2.1e+02 Score=23.39 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16001 93 LDMMDKELKNTKQDFQEYSDFLKTLELQLQYSL 125 (318)
Q Consensus 93 le~l~~~l~~~~~E~~~Y~~~L~~le~q~~~~~ 125 (318)
+++|+.+.+.++.+...|..-++.|+||..+..
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~ 35 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKKKLE 35 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999988888776653
No 28
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=22.77 E-value=6e+02 Score=26.28 Aligned_cols=115 Identities=13% Similarity=0.233 Sum_probs=58.0
Q ss_pred CccceeeeecccccCCCcccccccccCCcCCCcccc-ccCCCCCceEEeecCCCCC----CcchHHHHHHHHHHhhcCCC
Q psy16001 4 NSQTEIHLVPICSSQDIDLESQANSLDHFVPAFKLV-DSTNGSNGFCLLGKDESSN----SKGHQMKVYANLFDFLSSNS 78 (318)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~l~~~~~~~~----~ls~~~~~~~~lFdilS~~s 78 (318)
+....++++|+..++--.--.|....+...+..... ..+-. .+..++++..+.. -+..|++.+..--..+.
T Consensus 108 ~~~P~~~i~Pl~~sPrFtYfR~~~~~~~~~~~p~~~~FG~E~-tH~C~m~~~~p~~vQ~~L~~~Rl~~L~~qi~~~~--- 183 (475)
T PF10359_consen 108 SPNPKIKILPLAYSPRFTYFRQTDYGDKYQGDPKRSSFGNEP-THDCLMGDNDPRRVQIELIQERLDELEEQIEKHE--- 183 (475)
T ss_pred CCCCCeEEeecccCCceEEEeecCCCCcCCCCCCcCcCCCCC-ceeeEeecCCcchHHHHHHHHHHHHHHHHHHHHH---
Confidence 445578999999888777777766555543322221 22223 4677776665433 24444444443322221
Q ss_pred CCccCchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16001 79 GIDHPLCEECTDTLLDMMD--KELKNTKQDFQEYSDFLKTLELQLQYSLSQLNKFKST 134 (318)
Q Consensus 79 ~iDhPlC~eCtd~Lle~l~--~~l~~~~~E~~~Y~~~L~~le~q~~~~~~qLd~L~kt 134 (318)
..++.++ ..-...+.+.+.+.+-++.|+.+++..+.-++.|+..
T Consensus 184 ------------~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~ 229 (475)
T PF10359_consen 184 ------------EKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDS 229 (475)
T ss_pred ------------HhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1111111 1112233444445555555556666666666666544
No 29
>KOG1500|consensus
Probab=22.72 E-value=56 Score=33.57 Aligned_cols=106 Identities=22% Similarity=0.208 Sum_probs=58.8
Q ss_pred ceeeecCCCceEEecCCCceEecc-ccCCCcccc---cccchHHHHHHHHHHHHHHHHHhcCCCCCCCceeecc-CCccc
Q psy16001 195 YRIVPYGNHSYIEDTTEHKNLPLF-ASGGAKFFW---DTKFDMAMVAFLDCLQQFKEELEKGDSEFHLPYNMDS-KGKIE 269 (318)
Q Consensus 195 Y~LvP~GS~S~I~~~~~~~~l~Ly-~sg~~~~f~---~~kFD~AM~afL~cl~q~~~~v~~~~~~~~LPY~I~~-kdkI~ 269 (318)
|.---|+++|-.. ++.+++.- ++|-.++|. ..|-=-|..| .-+.|.++.+.++ -.+--+|.+ +|||+
T Consensus 165 Y~~Ail~N~sDF~---~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA--S~MAqyA~~Lv~~---N~~~~rItVI~GKiE 236 (517)
T KOG1500|consen 165 YQRAILENHSDFQ---DKIVLDVGAGSGILSFFAAQAGAKKVYAVEA--SEMAQYARKLVAS---NNLADRITVIPGKIE 236 (517)
T ss_pred HHHHHHhcccccC---CcEEEEecCCccHHHHHHHHhCcceEEEEeh--hHHHHHHHHHHhc---CCccceEEEccCccc
Confidence 3333467776443 34566664 334334431 1111111111 2244555554433 377788888 99998
Q ss_pred cCCCCCceeEEecCCCcchHHHHHHHHHHHHHHHHHHHhhhcccccc
Q psy16001 270 DETTGNTYSVKYQFNSQEQWTKALKFMLTNLKWGLAWVSSQFKNQFQ 316 (318)
Q Consensus 270 D~~~g~~~SIr~~~nsee~WTkAlK~mLtNlKw~La~~s~~~~~~~~ 316 (318)
|- .+...-+---...|-|||.|=.-+-.|+.+|-..+++
T Consensus 237 di--------eLPEk~DviISEPMG~mL~NERMLEsYl~Ark~l~P~ 275 (517)
T KOG1500|consen 237 DI--------ELPEKVDVIISEPMGYMLVNERMLESYLHARKWLKPN 275 (517)
T ss_pred cc--------cCchhccEEEeccchhhhhhHHHHHHHHHHHhhcCCC
Confidence 74 2222222223346999999999999999888666554
No 30
>KOG4603|consensus
Probab=22.23 E-value=2.1e+02 Score=26.63 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16001 90 DTLLDMMDKELKNTKQDFQEYSDFLKTL 117 (318)
Q Consensus 90 d~Lle~l~~~l~~~~~E~~~Y~~~L~~l 117 (318)
.+-+++|+.++..+.+||..|..-|+++
T Consensus 115 ~Lt~eemQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 115 ALTTEEMQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999988
No 31
>PF10613 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- and glycine-binding site; InterPro: IPR019594 This entry, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and binds L-glutamate and glycine [, ]. It is found in association with IPR001320 from INTERPRO. ; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 4E0W_A 3S9E_A 3QXM_B 2F34_A 3C34_B 3S2V_A 3GBB_B 2F36_D 4E0X_A 1TXF_A ....
Probab=21.56 E-value=69 Score=24.62 Aligned_cols=28 Identities=39% Similarity=0.575 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHcCcccccceeeecCCC
Q psy16001 175 GQTALLLTALARKLNLTFQRYRIVPYGNH 203 (318)
Q Consensus 175 GQ~~LLL~~la~kl~~~f~~Y~LvP~GS~ 203 (318)
|.+.=||..||+.+||++. ..++|-|.+
T Consensus 20 GyciDll~~la~~l~F~y~-i~~~~Dg~y 47 (65)
T PF10613_consen 20 GYCIDLLEELAEELNFTYE-IYLVPDGKY 47 (65)
T ss_dssp SHHHHHHHHHHHHHT-EEE-EEE-TTS--
T ss_pred EEHHHHHHHHHHHcCCeEE-EEECCCCCC
Confidence 5677899999999999864 445555544
No 32
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=21.17 E-value=2.3e+02 Score=29.85 Aligned_cols=42 Identities=10% Similarity=0.098 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16001 92 LLDMMDKELKNTKQD-------FQEYSDFLKTLELQLQYSLSQLNKFKS 133 (318)
Q Consensus 92 Lle~l~~~l~~~~~E-------~~~Y~~~L~~le~q~~~~~~qLd~L~k 133 (318)
-.++|+++|+.++.| ++.+.+-++++|..+...+.|++.++.
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 344555555555544 445555555556666666666654444
No 33
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=21.02 E-value=67 Score=27.07 Aligned_cols=16 Identities=25% Similarity=0.630 Sum_probs=12.6
Q ss_pred CchHHHHHHHHHHHHH
Q psy16001 83 PLCEECTDTLLDMMDK 98 (318)
Q Consensus 83 PlC~eCtd~Lle~l~~ 98 (318)
--|++|++.|.+.|.+
T Consensus 19 ~qC~~cA~Al~~~L~~ 34 (100)
T PF15643_consen 19 FQCVECASALKQFLKQ 34 (100)
T ss_pred eehHHHHHHHHHHHHH
Confidence 3499999998877763
No 34
>KOG3800|consensus
Probab=20.89 E-value=52 Score=32.54 Aligned_cols=16 Identities=38% Similarity=0.914 Sum_probs=14.1
Q ss_pred CCccCchHHHHHHHHH
Q psy16001 79 GIDHPLCEECTDTLLD 94 (318)
Q Consensus 79 ~iDhPlC~eCtd~Lle 94 (318)
.--|++|++|.|+|..
T Consensus 22 ~C~H~lCEsCvd~iF~ 37 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIFS 37 (300)
T ss_pred cccchHHHHHHHHHHh
Confidence 6789999999999865
No 35
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=20.32 E-value=3.3e+02 Score=25.40 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhcCCCC--CCCceeec
Q psy16001 237 AFLDCLQQFKEELEKGDSE--FHLPYNMD 263 (318)
Q Consensus 237 afL~cl~q~~~~v~~~~~~--~~LPY~I~ 263 (318)
.+..-+.+.....++..++ +.||-.+.
T Consensus 220 ~~~~~i~~ai~ia~kq~~~~l~~LPv~~~ 248 (251)
T PF11932_consen 220 SYRREIRKAIRIARKQRAPELLKLPVSIP 248 (251)
T ss_pred HHHHHHHHHHHHHhCCCCcHHhccCCCCC
Confidence 5566666666666654333 67886543
No 36
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.12 E-value=3.3e+02 Score=23.19 Aligned_cols=23 Identities=22% Similarity=0.536 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16001 94 DMMDKELKNTKQDFQEYSDFLKT 116 (318)
Q Consensus 94 e~l~~~l~~~~~E~~~Y~~~L~~ 116 (318)
..|+++|++++.|.+.|+.-+..
T Consensus 28 ~~l~~eL~~~k~el~~yk~~V~~ 50 (128)
T PF06295_consen 28 AKLEQELEQAKQELEQYKQEVND 50 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999876543
Done!