Query psy16001
Match_columns 318
No_of_seqs 153 out of 207
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 18:26:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16001.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16001hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ddp_A Beclin-1; ECD, autophag 100.0 3.7E-88 1.3E-92 614.1 18.7 199 116-314 9-210 (210)
2 3vp7_A Vacuolar protein sortin 100.0 1.4E-77 4.9E-82 547.7 13.8 173 134-313 1-220 (220)
3 2p1l_B Beclin 1; apoptosis, au 98.6 1.5E-08 5E-13 66.6 1.5 27 57-83 5-31 (31)
4 3q8t_A Beclin-1; autophagy, AT 93.8 0.15 5.3E-06 40.7 6.7 17 118-134 80-96 (96)
5 3mq7_A Bone marrow stromal ant 55.0 52 0.0018 27.3 7.9 53 84-136 50-102 (121)
6 3bua_E HSNM1B, DNA cross-LINK 46.1 8.6 0.00029 25.5 1.5 23 289-311 4-26 (36)
7 1go4_E MAD1 (mitotic arrest de 44.1 81 0.0028 25.3 7.2 34 80-117 5-38 (100)
8 3mq9_A Bone marrow stromal ant 39.9 83 0.0029 29.9 8.0 43 91-133 429-471 (471)
9 3nmd_A CGMP dependent protein 36.2 1.3E+02 0.0043 22.9 6.8 33 101-133 36-68 (72)
10 3tq7_B Microtubule-associated 33.7 53 0.0018 25.5 4.5 27 92-118 9-35 (82)
11 4e61_A Protein BIM1; EB1-like 29.3 1.3E+02 0.0046 24.3 6.3 28 93-120 27-54 (106)
12 3hnw_A Uncharacterized protein 28.4 1.4E+02 0.0047 24.9 6.6 41 93-133 77-117 (138)
13 3rrk_A V-type ATPase 116 kDa s 25.2 3.8E+02 0.013 24.4 9.7 75 59-138 64-143 (357)
14 3qh9_A Liprin-beta-2; coiled-c 24.6 2.1E+02 0.0071 22.2 6.3 32 95-126 30-61 (81)
15 2nsc_A Trigger factor, TF; cha 24.5 23 0.00079 27.9 1.0 33 151-189 40-72 (109)
16 3mtu_A Tropomyosin alpha-1 cha 24.1 1.1E+02 0.0038 22.9 4.7 31 90-120 15-45 (75)
17 1l8d_A DNA double-strand break 23.2 2E+02 0.007 22.0 6.3 66 60-129 29-102 (112)
18 3m9b_A Proteasome-associated A 23.2 1.1E+02 0.0036 28.4 5.2 50 93-142 56-105 (251)
19 2d3o_1 Trigger factor, TF; rib 22.2 28 0.00097 27.5 1.1 12 151-162 39-50 (112)
20 2v71_A Nuclear distribution pr 22.1 2.1E+02 0.007 25.3 6.7 27 91-117 17-43 (189)
21 2v4h_A NF-kappa-B essential mo 22.0 1.5E+02 0.0051 24.2 5.4 12 123-134 94-105 (110)
22 3ter_A Mammalian stromal inter 21.2 1.8E+02 0.0063 24.5 5.9 43 93-135 8-75 (136)
23 3cve_A Homer protein homolog 1 20.3 2.5E+02 0.0085 21.2 5.9 29 96-124 5-33 (72)
24 4fla_A Regulation of nuclear P 20.2 2.1E+02 0.007 24.2 6.2 20 98-117 114-133 (152)
No 1
>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A {Homo sapiens}
Probab=100.00 E-value=3.7e-88 Score=614.10 Aligned_cols=199 Identities=73% Similarity=1.269 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHHHHHHHhcccCcceeeeeecCceeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCcccccc
Q psy16001 116 TLELQLQYSLSQLNKFKSTNVFNATFHIWHSGHFGTINNFRLGTLPSAPVDWSEINAAWGQTALLLTALARKLNLTFQRY 195 (318)
Q Consensus 116 ~le~q~~~~~~qLd~L~ktNv~n~~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~~la~kl~~~f~~Y 195 (318)
++|+|++++++|||+|+||||||++|||||||+|||||||||||+|++||+|+||||||||+||||++||+++|++|++|
T Consensus 9 sl~~q~~~~~~~L~~L~~tNv~n~~F~I~hdG~fgtINglRLGrlp~~~V~W~EINAAwGq~~LLL~tla~~l~~~f~~y 88 (210)
T 4ddp_A 9 SVENQMRYAQTQLDKLKKTNVFNATFHIWHSGQFGTINNFRLGRLPSVPVEWNEINAAWGQTVLLLHALANKMGLKFQRY 88 (210)
T ss_dssp CHHHHHHHHHHHHHTC----CCSSCCCEEEETTEEEETTEECCCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHTCCCSSE
T ss_pred HHHHHHHHHHHHHHHHHhcccccceeEEEecCCceeEcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccce
Confidence 44899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCceEEecCCC-ceEeccccCCCcccccccchHHHHHHHHHHHHHHHHHhcCCCCCCCceeecc-CCccccCCC
Q psy16001 196 RIVPYGNHSYIEDTTEH-KNLPLFASGGAKFFWDTKFDMAMVAFLDCLQQFKEELEKGDSEFHLPYNMDS-KGKIEDETT 273 (318)
Q Consensus 196 ~LvP~GS~S~I~~~~~~-~~l~Ly~sg~~~~f~~~kFD~AM~afL~cl~q~~~~v~~~~~~~~LPY~I~~-kdkI~D~~~ 273 (318)
+|+||||+|+|++++++ ++||||++|++++|+++|||.||+|||+||+||++++++++++++|||+|++ ||||+|+++
T Consensus 89 ~L~P~GS~S~I~~~~~~~~~l~Ly~sg~~~~f~~~kFD~Am~afL~cl~q~~~~~~~~~~~~~lPY~I~~~~dkI~D~~~ 168 (210)
T 4ddp_A 89 RLVPYGNHSYLESLTDKSKELPLYCSGGLRFFWDNKFDHAMVAFLDCVQQFKEEVEKGETRFCLPYRMDVEKGKIEDTGG 168 (210)
T ss_dssp EEECCGGGCEEEESSCTTCCEESCCCSSCGGGCCSHHHHHHHHHHHHHHHHHHHHHCC-CCCCCSSCEETTTTEEECTTT
T ss_pred eEEecCCcceeeEecCCCeEEeceeCCCccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCeEEecCCCEecCccC
Confidence 99999999999999887 8999999999999999999999999999999999999999999999999943 999999876
Q ss_pred -CCceeEEecCCCcchHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy16001 274 -GNTYSVKYQFNSQEQWTKALKFMLTNLKWGLAWVSSQFKNQ 314 (318)
Q Consensus 274 -g~~~SIr~~~nsee~WTkAlK~mLtNlKw~La~~s~~~~~~ 314 (318)
|++||||+++|++|+||+||||||||+||+|||+|+|+.+|
T Consensus 169 ~~~~~SIrl~~n~~e~WTkAlK~mLtnlKw~La~~s~~~~~~ 210 (210)
T 4ddp_A 169 SGGSYSIKTQFNSEEQWTKALKFMLTNLKWGLAWVSSQFYNK 210 (210)
T ss_dssp TCCEEESCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CCCceEEEecCCCccHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 78999999999999999999999999999999999999764
No 2
>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-77 Score=547.71 Aligned_cols=173 Identities=40% Similarity=0.674 Sum_probs=151.9
Q ss_pred cccCcceeeeeecCceeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCcccccceeeecCCCceEEe-----
Q psy16001 134 TNVFNATFHIWHSGHFGTINNFRLGTLPSAPVDWSEINAAWGQTALLLTALARKLNLTFQRYRIVPYGNHSYIED----- 208 (318)
Q Consensus 134 tNv~n~~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~~la~kl~~~f~~Y~LvP~GS~S~I~~----- 208 (318)
|||||++|||||||+|||||||||||+|++||+|+||||||||+||||++||+++|++|++|+|+||||+|+|++
T Consensus 1 tNV~Nd~F~I~hdg~fgTINglRLGrl~~~~V~W~EINAAwGq~~LLL~tla~kl~~~f~~Y~L~PmGS~S~I~~~~~~~ 80 (220)
T 3vp7_A 1 INIFNATFKISHSGPFATINGLRLGSIPESVVPWKEINAALGQLILLLATINKNLKINLVDYELQPMGSFSKIKKRMVNS 80 (220)
T ss_dssp CCTTTTTCCEEEETTEEEETTEEECCBTTBCCCHHHHHHHHHHHHHHHHHHHHHTTCCCSSEEEECCGGGCEEEEEC---
T ss_pred CccccceeEEeecCCceeEcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcccceEEeCCCcceEeeccccc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --cCC-------C-ceEeccccCCCc---cccc-ccchHHHHHHHHHHHHHHHHHhcC----------------------
Q psy16001 209 --TTE-------H-KNLPLFASGGAK---FFWD-TKFDMAMVAFLDCLQQFKEELEKG---------------------- 252 (318)
Q Consensus 209 --~~~-------~-~~l~Ly~sg~~~---~f~~-~kFD~AM~afL~cl~q~~~~v~~~---------------------- 252 (318)
+++ + .+||||++|+++ +|++ +|||+||+|||+||+||++++++.
T Consensus 81 ~~~~~~~~~~~~~~~~l~Ly~s~~~~lg~~f~~~~kFD~aMvafL~cl~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (220)
T 3vp7_A 81 VEYNNSTTNAPGDWLILPVYYDENFNLGRIFRKETKFDKSLETTLEIISEITRQLSTIASSYSSQTLTTSQDESSMNNAN 160 (220)
T ss_dssp ------------CEEEEESSCCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------
T ss_pred ccccccccccCCCCeEEecccCCCcccccccccccchhHHHHHHHHHHHHHHHHHHhcCccccccccccccccccccccc
Confidence 443 2 689999999985 4754 699999999999999999998752
Q ss_pred ----C-CCCCCceeeccCCccccCCCCCceeEEecC-CCcchHHHHHHHHHHHHHHHHHHHhhhccc
Q psy16001 253 ----D-SEFHLPYNMDSKGKIEDETTGNTYSVKYQF-NSQEQWTKALKFMLTNLKWGLAWVSSQFKN 313 (318)
Q Consensus 253 ----~-~~~~LPY~I~~kdkI~D~~~g~~~SIr~~~-nsee~WTkAlK~mLtNlKw~La~~s~~~~~ 313 (318)
+ ++++|||+|+ +|||+ ++|||+++ |++|+|||||||||||+||+|||+|+++.+
T Consensus 161 ~~~~~~~~l~LPY~I~-~DkI~------g~SIkl~~~~~~e~WTkAlK~~LtnlKwlLa~~S~~~~~ 220 (220)
T 3vp7_A 161 DVENSTSILELPYIMN-KDKIN------GLSVKLHGSSPNLEWTTAMKFLLTNVKWLLAFSSNLLSK 220 (220)
T ss_dssp --------CCCSSCEE-TTEET------TEESCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cccCCCCcccCCeEee-CCcCC------CEEEEeecCCCccHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 1 2499999999 99995 58999998 578999999999999999999999999853
No 3
>2p1l_B Beclin 1; apoptosis, autophagy, BH3 domain, BCL; 2.50A {Homo sapiens} PDB: 3dvu_C 2pon_A
Probab=98.56 E-value=1.5e-08 Score=66.61 Aligned_cols=27 Identities=33% Similarity=0.701 Sum_probs=18.7
Q ss_pred CCCcchHHHHHHHHHHhhcCCCCCccC
Q psy16001 57 SNSKGHQMKVYANLFDFLSSNSGIDHP 83 (318)
Q Consensus 57 ~~~ls~~~~~~~~lFdilS~~s~iDhP 83 (318)
.+++|++++++++||||||++++||||
T Consensus 5 ~~~ls~~~~~~~~lFdILS~~sdIDhP 31 (31)
T 2p1l_B 5 MENLSRRLKVTGDLFDIMSGQTDVDHP 31 (31)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-------
T ss_pred cccHHHHHHHHHHHHHHHhCCCcCCCC
Confidence 467999999999999999999999999
No 4
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=93.78 E-value=0.15 Score=40.67 Aligned_cols=17 Identities=41% Similarity=0.608 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHhc
Q psy16001 118 ELQLQYSLSQLNKFKST 134 (318)
Q Consensus 118 e~q~~~~~~qLd~L~kt 134 (318)
++||.|++.||++|+|.
T Consensus 80 ~~q~~~~~~qLdkL~K~ 96 (96)
T 3q8t_A 80 ENQMRYAQMQLDKLKKK 96 (96)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 79999999999999973
No 5
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=55.03 E-value=52 Score=27.35 Aligned_cols=53 Identities=17% Similarity=0.275 Sum_probs=37.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy16001 84 LCEECTDTLLDMMDKELKNTKQDFQEYSDFLKTLELQLQYSLSQLNKFKSTNV 136 (318)
Q Consensus 84 lC~eCtd~Lle~l~~~l~~~~~E~~~Y~~~L~~le~q~~~~~~qLd~L~ktNv 136 (318)
-|..=...|.+-|+.+-.+.++..+....-++.|+.+++-+..++++||+-|-
T Consensus 50 TCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 50 TANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 35555666666666666665555555555666667888999999999999874
No 6
>3bua_E HSNM1B, DNA cross-LINK repair 1B protein; TRF2 TRFH domain dimerization domain apollo peptide, alternative splicing, cell cycle; HET: DNA; 2.50A {Homo sapiens}
Probab=46.12 E-value=8.6 Score=25.53 Aligned_cols=23 Identities=35% Similarity=0.258 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q psy16001 289 WTKALKFMLTNLKWGLAWVSSQF 311 (318)
Q Consensus 289 WTkAlK~mLtNlKw~La~~s~~~ 311 (318)
--.|+|||||-+.++-+-.|++-
T Consensus 4 r~LALKYLLTPv~~l~a~~Ssr~ 26 (36)
T 3bua_E 4 RGLALKYLLTPVNFFQAGYSSRR 26 (36)
T ss_pred HHHHHHHHhhhHHHHhcccchhh
Confidence 35799999999999888766653
No 7
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=44.08 E-value=81 Score=25.34 Aligned_cols=34 Identities=9% Similarity=0.099 Sum_probs=22.2
Q ss_pred CccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16001 80 IDHPLCEECTDTLLDMMDKELKNTKQDFQEYSDFLKTL 117 (318)
Q Consensus 80 iDhPlC~eCtd~Lle~l~~~l~~~~~E~~~Y~~~L~~l 117 (318)
-+.|++.| =++.+..+++.++.|++.-.+..+.|
T Consensus 5 ~~~~~~~e----~~~~lr~ei~~Le~E~~rLr~~~~~L 38 (100)
T 1go4_E 5 QSFLFSRE----EADTLRLKVEELEGERSRLEEEKRML 38 (100)
T ss_dssp ----CHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcchH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566544 56677778888888888887777776
No 8
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=39.87 E-value=83 Score=29.93 Aligned_cols=43 Identities=19% Similarity=0.345 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16001 91 TLLDMMDKELKNTKQDFQEYSDFLKTLELQLQYSLSQLNKFKS 133 (318)
Q Consensus 91 ~Lle~l~~~l~~~~~E~~~Y~~~L~~le~q~~~~~~qLd~L~k 133 (318)
.|.+.|+++..+.++..+.-..-..+++.+++.+.+|++++|+
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (471)
T 3mq9_A 429 ALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 471 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444444444444444444444444446677777788887764
No 9
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=36.24 E-value=1.3e+02 Score=22.91 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16001 101 KNTKQDFQEYSDFLKTLELQLQYSLSQLNKFKS 133 (318)
Q Consensus 101 ~~~~~E~~~Y~~~L~~le~q~~~~~~qLd~L~k 133 (318)
.+-+.-.+.+..-|...+..+...+.+||+++.
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333333444444455457778888999999875
No 10
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=33.68 E-value=53 Score=25.49 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16001 92 LLDMMDKELKNTKQDFQEYSDFLKTLE 118 (318)
Q Consensus 92 Lle~l~~~l~~~~~E~~~Y~~~L~~le 118 (318)
-+..|+..++.+++||+-|-.-|+.+|
T Consensus 9 ei~eLk~~ve~lEkERDFYF~KLRdIE 35 (82)
T 3tq7_B 9 QLVDLKLTVDGLEKERDFYFSKLRDIE 35 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788999999999999999999885
No 11
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=29.29 E-value=1.3e+02 Score=24.32 Aligned_cols=28 Identities=11% Similarity=0.234 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16001 93 LDMMDKELKNTKQDFQEYSDFLKTLELQ 120 (318)
Q Consensus 93 le~l~~~l~~~~~E~~~Y~~~L~~le~q 120 (318)
+..|+...+.+++|||-|-.-|+.+|.=
T Consensus 27 i~eLk~~ve~lEkERDFYF~KLRdIEiL 54 (106)
T 4e61_A 27 IEQYKGTVSTLEIEREFYFNKLRDIEIL 54 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5668888999999999999999987643
No 12
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=28.45 E-value=1.4e+02 Score=24.85 Aligned_cols=41 Identities=15% Similarity=0.311 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16001 93 LDMMDKELKNTKQDFQEYSDFLKTLELQLQYSLSQLNKFKS 133 (318)
Q Consensus 93 le~l~~~l~~~~~E~~~Y~~~L~~le~q~~~~~~qLd~L~k 133 (318)
.+.|..+++...+|...|+.=|.++..+++.+..+++.|++
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~ 117 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKS 117 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666667776666554455555555554443
No 13
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=25.20 E-value=3.8e+02 Score=24.41 Aligned_cols=75 Identities=9% Similarity=0.024 Sum_probs=50.7
Q ss_pred CcchHHHHHHHHHHhhcCCCCCc-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhc
Q psy16001 59 SKGHQMKVYANLFDFLSSNSGID-HPLCEECTDTLLDMMDKELKNTKQDFQEYSDFLKTLELQLQYSLSQ---LNKFKST 134 (318)
Q Consensus 59 ~ls~~~~~~~~lFdilS~~s~iD-hPlC~eCtd~Lle~l~~~l~~~~~E~~~Y~~~L~~le~q~~~~~~q---Ld~L~kt 134 (318)
.++..+..+..+.++|..-..-. .|+=.+ ++.++..++.+..+.....+-+.+|+.++...+.+ ++.|...
T Consensus 64 ~~~~~~~k~~~~~~~L~~~~~~~~~~~~~~-----~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~ 138 (357)
T 3rrk_A 64 RWEAVVSQAEQSLTVVGLATVPSSKPFTGS-----LEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAAL 138 (357)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCSSCCCSC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccccccCCcch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Confidence 45667777888888886432221 222111 66777778888888888888888887887777777 8888765
Q ss_pred c-cCc
Q psy16001 135 N-VFN 138 (318)
Q Consensus 135 N-v~n 138 (318)
- .++
T Consensus 139 ~~~ld 143 (357)
T 3rrk_A 139 AHGLD 143 (357)
T ss_dssp TTTTT
T ss_pred hccCC
Confidence 5 555
No 14
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=24.57 E-value=2.1e+02 Score=22.23 Aligned_cols=32 Identities=9% Similarity=0.123 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16001 95 MMDKELKNTKQDFQEYSDFLKTLELQLQYSLS 126 (318)
Q Consensus 95 ~l~~~l~~~~~E~~~Y~~~L~~le~q~~~~~~ 126 (318)
.|.-++++++.||-.|..-|+.-...+...+.
T Consensus 30 ~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~ 61 (81)
T 3qh9_A 30 HLKIKVEELENERNQYEWKLKATKAEVAQLQE 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 46678899999999999988876443333333
No 15
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=24.49 E-value=23 Score=27.94 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=21.8
Q ss_pred eeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcC
Q psy16001 151 TINNFRLGTLPSAPVDWSEINAAWGQTALLLTALARKLN 189 (318)
Q Consensus 151 TINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~~la~kl~ 189 (318)
.|.|||-|+ ||=+-|..-.|.. +.-.++-.-++
T Consensus 40 ~ipGFRkGK-----vP~~vi~k~yG~~-v~~ea~~~~i~ 72 (109)
T 2nsc_A 40 EIPGFRKGR-----IPKNVLKMKLGEE-FQEYTLDFLMD 72 (109)
T ss_dssp CCTTSCTTC-----CCHHHHHHHHGGG-HHHHHHHHHHT
T ss_pred CCCCcCCCC-----CCHHHHHHHHhHH-HHHHHHHHHHH
Confidence 589999998 5567788888843 44444444444
No 16
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=24.07 E-value=1.1e+02 Score=22.92 Aligned_cols=31 Identities=16% Similarity=0.088 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16001 90 DTLLDMMDKELKNTKQDFQEYSDFLKTLELQ 120 (318)
Q Consensus 90 d~Lle~l~~~l~~~~~E~~~Y~~~L~~le~q 120 (318)
..=.+.+..+++.+++||+-|-.-|+.+|.-
T Consensus 15 k~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l 45 (75)
T 3mtu_A 15 KLDKENALDRAEQAEADKDFYFGKLRNIELI 45 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3445566667788888999888888877543
No 17
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=23.21 E-value=2e+02 Score=22.02 Aligned_cols=66 Identities=18% Similarity=0.259 Sum_probs=34.7
Q ss_pred cchHHHHHHHHHHhhcCCCCCccCchHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16001 60 KGHQMKVYANLFDFLSSNSGIDHPLCEECT--------DTLLDMMDKELKNTKQDFQEYSDFLKTLELQLQYSLSQLN 129 (318)
Q Consensus 60 ls~~~~~~~~lFdilS~~s~iDhPlC~eCt--------d~Lle~l~~~l~~~~~E~~~Y~~~L~~le~q~~~~~~qLd 129 (318)
+.+++..+.+....+.. +.-.|.-|. ..+++..+.++...+.+...-..-++.++.++.....++.
T Consensus 29 l~~~i~~l~~~l~~l~~----~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 29 LKNKIGDLKTAIEELKK----AKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHTT----CSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc----CCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666643 244466663 2455556666666555555544444444444444444444
No 18
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=23.17 E-value=1.1e+02 Score=28.42 Aligned_cols=50 Identities=8% Similarity=0.084 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcceee
Q psy16001 93 LDMMDKELKNTKQDFQEYSDFLKTLELQLQYSLSQLNKFKSTNVFNATFH 142 (318)
Q Consensus 93 le~l~~~l~~~~~E~~~Y~~~L~~le~q~~~~~~qLd~L~ktNv~n~~F~ 142 (318)
+.+|+.+++.++...+.-..-|+.+..++...+.++++|+.--.+=.+|-
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~iGtvl 105 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSGYGVLL 105 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 34566777666666665667788888999999999999999888877774
No 19
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=22.15 E-value=28 Score=27.54 Aligned_cols=12 Identities=33% Similarity=0.686 Sum_probs=10.6
Q ss_pred eeccccCCCCCC
Q psy16001 151 TINNFRLGTLPS 162 (318)
Q Consensus 151 TINGlRLGrlp~ 162 (318)
.|.|||-|+.|-
T Consensus 39 ~ipGFRkGKvP~ 50 (112)
T 2d3o_1 39 RVPGFRPGKAPR 50 (112)
T ss_dssp CBTTBCTTCCCS
T ss_pred CCCCcCCCCCCH
Confidence 589999999875
No 20
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=22.15 E-value=2.1e+02 Score=25.32 Aligned_cols=27 Identities=11% Similarity=0.274 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16001 91 TLLDMMDKELKNTKQDFQEYSDFLKTL 117 (318)
Q Consensus 91 ~Lle~l~~~l~~~~~E~~~Y~~~L~~l 117 (318)
.+.+++..++++++.|-+.|...=+.|
T Consensus 17 ~~~~~~~q~~~~le~El~EFqesSrEL 43 (189)
T 2v71_A 17 ELSMKYKQSFQEARDELVEFQEGSREL 43 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788889999999999988877666
No 21
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=21.97 E-value=1.5e+02 Score=24.23 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=5.7
Q ss_pred HHHHHHHHHHhc
Q psy16001 123 YSLSQLNKFKST 134 (318)
Q Consensus 123 ~~~~qLd~L~kt 134 (318)
..+.||..|++-
T Consensus 94 ~L~~ql~~Lq~q 105 (110)
T 2v4h_A 94 YLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344455555443
No 22
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=21.22 E-value=1.8e+02 Score=24.53 Aligned_cols=43 Identities=5% Similarity=0.278 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHH-HH---------HHHHHH---------------HHHHHHHHHHHHHHHhcc
Q psy16001 93 LDMMDKELKNTKQDFQE-YS---------DFLKTL---------------ELQLQYSLSQLNKFKSTN 135 (318)
Q Consensus 93 le~l~~~l~~~~~E~~~-Y~---------~~L~~l---------------e~q~~~~~~qLd~L~ktN 135 (318)
+|++..+|..+++|-+. +. .+|..- +.|+..|....+||+|-+
T Consensus 8 le~lr~aL~~AE~eLe~~~~~w~~p~~Lq~wLq~T~E~E~q~~~~kk~~Aekql~~Ake~~eKlkKKr 75 (136)
T 3ter_A 8 MENLRVQLEEAERRLEANSNGSQAPLALQPLLRRTCENEMAFLEKQRQDCFKEMKEAIEMVDRLQKKQ 75 (136)
T ss_dssp HHHHHHHHHHHHHHHC-----CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHhHHHHHHHHHccccHHHHHHHHHHHHHHHHHhh
Confidence 67777888888887654 21 122111 678889999999999873
No 23
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=20.35 E-value=2.5e+02 Score=21.19 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16001 96 MDKELKNTKQDFQEYSDFLKTLELQLQYS 124 (318)
Q Consensus 96 l~~~l~~~~~E~~~Y~~~L~~le~q~~~~ 124 (318)
+..++..++.+.+.-...+..+|.+++.+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s 33 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKS 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554444443
No 24
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=20.24 E-value=2.1e+02 Score=24.24 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16001 98 KELKNTKQDFQEYSDFLKTL 117 (318)
Q Consensus 98 ~~l~~~~~E~~~Y~~~L~~l 117 (318)
.++.+++...+.|++++.++
T Consensus 114 ~~l~e~e~~leeyK~Kl~rv 133 (152)
T 4fla_A 114 DVLSEKEKKLEEYKQKLARV 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35555556666666666544
Done!