Query psy16001
Match_columns 318
No_of_seqs 153 out of 207
Neff 4.5
Searched_HMMs 13730
Date Fri Aug 16 18:26:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16001.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16001hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wu9a1 a.245.1.1 (A:191-249) 46.7 13 0.00094 25.6 4.5 26 93-118 10-35 (59)
2 d2dm9a1 d.81.4.1 (A:81-198) V- 29.7 47 0.0034 24.1 5.7 66 87-157 1-84 (118)
3 d1fxkc_ a.2.5.1 (C:) Prefoldin 23.0 1.3E+02 0.0095 21.8 7.4 40 93-132 90-129 (133)
4 d1t11a2 d.241.2.1 (A:1-129) Tr 20.9 14 0.001 28.1 0.9 49 151-204 40-91 (129)
5 d1p9ya_ d.241.2.1 (A:) Trigger 19.1 16 0.0011 27.3 0.9 23 150-177 39-61 (117)
6 d2p4pa1 d.145.1.4 (A:1-82) Hyp 18.5 5.2 0.00038 28.4 -2.0 26 138-163 20-51 (82)
7 d3deda1 d.145.1.4 (A:341-427) 16.0 6.3 0.00046 28.2 -2.1 18 145-162 36-56 (87)
8 d1u2ca2 d.272.1.1 (A:179-303) 14.9 57 0.0041 25.2 3.3 31 176-206 26-56 (125)
9 d1ab4a_ e.11.1.1 (A:) DNA Gyra 14.4 1.2E+02 0.0087 27.6 6.1 42 93-134 442-483 (493)
10 d1d4ua2 g.39.1.5 (A:1-36) DNA 14.3 16 0.0012 22.8 -0.2 12 79-90 23-34 (36)
No 1
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.68 E-value=13 Score=25.57 Aligned_cols=26 Identities=12% Similarity=0.325 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16001 93 LDMMDKELKNTKQDFQEYSDFLKTLE 118 (318)
Q Consensus 93 le~l~~~l~~~~~E~~~Y~~~L~~le 118 (318)
+..|+..++.+++|||-|-.-|+.+|
T Consensus 10 i~elk~~v~~lEkERdFYF~KLRdIE 35 (59)
T d1wu9a1 10 VNVLKLTVEDLEKERDFYFGKLRNIE 35 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999875
No 2
>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]}
Probab=29.74 E-value=47 Score=24.13 Aligned_cols=66 Identities=21% Similarity=0.292 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHhcccCcceeeeeecCc
Q psy16001 87 ECTDTLLDMMDKELKNTKQDFQEYSDFLKTL------------------ELQLQYSLSQLNKFKSTNVFNATFHIWHSGH 148 (318)
Q Consensus 87 eCtd~Lle~l~~~l~~~~~E~~~Y~~~L~~l------------------e~q~~~~~~qLd~L~ktNv~n~~F~I~hdG~ 148 (318)
|+-+.+++....++....+ +.|..+|++| +.-.......++.+.+.- .. -.+..+.+
T Consensus 1 E~i~~v~~~a~~~l~~~~~--~~Y~~~L~~Li~~a~~~l~~~ev~v~~~~~D~~~v~~~~~~~~~~~--~~-~~~~~~~~ 75 (118)
T d2dm9a1 1 EIISSVLEEVKRRLETMSE--DEYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSEL--GD-VSIELGET 75 (118)
T ss_dssp CHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHTCSEEEEECCHHHHHHHHHTHHHHHHHC--TT-CEEEECCC
T ss_pred CHHHHHHHHHHHHHHccCh--hHHHHHHHHHHHHHHHHhCCCcEEEEEchhhHHHHHHHHHHHHHHc--CC-ceeEeCCC
Confidence 3556777777888877754 4699999998 222333344444443321 11 12344566
Q ss_pred eeeeccccC
Q psy16001 149 FGTINNFRL 157 (318)
Q Consensus 149 fGTINGlRL 157 (318)
--++.||++
T Consensus 76 ~~~~GGvil 84 (118)
T d2dm9a1 76 VDTMGGVIV 84 (118)
T ss_dssp CCCSSEEEE
T ss_pred CccCCCEEE
Confidence 677889998
No 3
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=23.00 E-value=1.3e+02 Score=21.84 Aligned_cols=40 Identities=8% Similarity=0.150 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16001 93 LDMMDKELKNTKQDFQEYSDFLKTLELQLQYSLSQLNKFK 132 (318)
Q Consensus 93 le~l~~~l~~~~~E~~~Y~~~L~~le~q~~~~~~qLd~L~ 132 (318)
++.++++++.+++..+.+..-+++++.++...+.+++++-
T Consensus 90 ~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~ 129 (133)
T d1fxkc_ 90 MESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888888877788877777777664
No 4
>d1t11a2 d.241.2.1 (A:1-129) Trigger factor ribosome-binding domain {Vibrio cholerae [TaxId: 666]}
Probab=20.92 E-value=14 Score=28.08 Aligned_cols=49 Identities=20% Similarity=0.401 Sum_probs=24.9
Q ss_pred eeccccCCCCCCCCCChHHHHHHHHHHHH---HHHHHHHHcCcccccceeeecCCCc
Q psy16001 151 TINNFRLGTLPSAPVDWSEINAAWGQTAL---LLTALARKLNLTFQRYRIVPYGNHS 204 (318)
Q Consensus 151 TINGlRLGrlp~~~V~W~EINAAwGQ~~L---LL~~la~kl~~~f~~Y~LvP~GS~S 204 (318)
.|.|||-|+.|. +-|..-.|..++ +-..+-+.+.=....-.+.|.|...
T Consensus 40 ~ipGFRkGKvP~-----~ii~k~~~~~i~~e~~~~~i~~~~~~~l~e~~i~~~~~p~ 91 (129)
T d1t11a2 40 RFDGFRKGKVPM-----KMVAKMYGKAVRQDVLGEVMQRHFIEAIVKEKINPAGAPT 91 (129)
T ss_dssp CCTTSCSSCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCCE
T ss_pred CCCCCCCCCCcH-----HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcccCcccCCC
Confidence 589999999654 344444444221 1111222222222344577877664
No 5
>d1p9ya_ d.241.2.1 (A:) Trigger factor ribosome-binding domain {Escherichia coli [TaxId: 562]}
Probab=19.15 E-value=16 Score=27.33 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=16.1
Q ss_pred eeeccccCCCCCCCCCChHHHHHHHHHH
Q psy16001 150 GTINNFRLGTLPSAPVDWSEINAAWGQT 177 (318)
Q Consensus 150 GTINGlRLGrlp~~~V~W~EINAAwGQ~ 177 (318)
..|.|||-|+.| =+-|-.-.|..
T Consensus 39 ~~ipGFRkGKvP-----~~vi~k~yg~~ 61 (117)
T d1p9ya_ 39 VRIDGLRKGKVP-----MNIVAQRYGAS 61 (117)
T ss_dssp CCCTTSCTTCSC-----HHHHHHHHHHH
T ss_pred CCCCCcCCCCcc-----HHHHHHHHhHH
Confidence 469999999854 45566666653
No 6
>d2p4pa1 d.145.1.4 (A:1-82) Hypothetical protein HD1797 {Haemophilus ducreyi [TaxId: 730]}
Probab=18.49 E-value=5.2 Score=28.38 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=18.9
Q ss_pred cceeeee---ecCceeeeccc---cCCCCCCC
Q psy16001 138 NATFHIW---HSGHFGTINNF---RLGTLPSA 163 (318)
Q Consensus 138 n~~F~I~---hdG~fGTINGl---RLGrlp~~ 163 (318)
|+.|.|. .++.|-||+|| +||++|.+
T Consensus 20 ~~~~~~~~~~~~~~~~TlgG~i~~~lg~iP~~ 51 (82)
T d2p4pa1 20 MRALNIHTFPRDENYETIGGFMMYMLRKIPKK 51 (82)
T ss_dssp HHHTTCCCSCCSCSSCBHHHHHHHHHCSCCCT
T ss_pred HHHhCCCCCCcccCccCHHHHHHHHhCcCCCC
Confidence 4556554 45789999998 67888873
No 7
>d3deda1 d.145.1.4 (A:341-427) Probable hemolysin CV0231 {Chromobacterium violaceum [TaxId: 536]}
Probab=15.98 E-value=6.3 Score=28.18 Aligned_cols=18 Identities=33% Similarity=0.667 Sum_probs=14.8
Q ss_pred ecCceeeeccc---cCCCCCC
Q psy16001 145 HSGHFGTINNF---RLGTLPS 162 (318)
Q Consensus 145 hdG~fGTINGl---RLGrlp~ 162 (318)
.++.|-||+|| +||++|.
T Consensus 36 ~~~~~~TlgG~il~~lg~iP~ 56 (87)
T d3deda1 36 AGGNIHTLAGVMLYQLGRVPS 56 (87)
T ss_dssp GGTCCCBHHHHHHHHHCSSCC
T ss_pred ccccccCHHHHHHHHhCcCCC
Confidence 36889999998 6788886
No 8
>d1u2ca2 d.272.1.1 (A:179-303) Dystroglycan, domain 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.86 E-value=57 Score=25.21 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCcccccceeeecCCCceE
Q psy16001 176 QTALLLTALARKLNLTFQRYRIVPYGNHSYI 206 (318)
Q Consensus 176 Q~~LLL~~la~kl~~~f~~Y~LvP~GS~S~I 206 (318)
|=+-||..+|+.++++.+..+|+|..+.+.|
T Consensus 26 ~Rv~ll~~lA~f~~l~~~~~~L~P~~n~~l~ 56 (125)
T d1u2ca2 26 QRIDLLNRMQSFSEVELHNMKLVPVVNNRLF 56 (125)
T ss_dssp HHHHHHHHHHHHHCSCGGGCEEEECCTTCCC
T ss_pred HHHHHHHHHHHHhCCCHHHeEeccccCcccc
Confidence 4467899999999999999999998877755
No 9
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Probab=14.36 E-value=1.2e+02 Score=27.61 Aligned_cols=42 Identities=12% Similarity=0.137 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16001 93 LDMMDKELKNTKQDFQEYSDFLKTLELQLQYSLSQLNKFKST 134 (318)
Q Consensus 93 le~l~~~l~~~~~E~~~Y~~~L~~le~q~~~~~~qLd~L~kt 134 (318)
.+.|..|+++.++|.+.|...|++-+...+....+|+.+++.
T Consensus 442 ~~kL~~E~~~l~~ei~eL~~iL~s~~~l~~~i~~EL~~lk~k 483 (493)
T d1ab4a_ 442 HEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQ 483 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999998876666677778888887753
No 10
>d1d4ua2 g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.29 E-value=16 Score=22.85 Aligned_cols=12 Identities=42% Similarity=1.154 Sum_probs=9.8
Q ss_pred CCccCchHHHHH
Q psy16001 79 GIDHPLCEECTD 90 (318)
Q Consensus 79 ~iDhPlC~eCtd 90 (318)
..|||+|..|-|
T Consensus 23 ~Fd~~vCD~CRD 34 (36)
T d1d4ua2 23 HFDLPTCDDCRD 34 (36)
T ss_dssp TTSCCCCTTTCS
T ss_pred cCCchhcccccC
Confidence 579999999864
Done!