RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16001
         (318 letters)



>d1px5a2 d.218.1.6 (A:1-200) 2'-5'-oligoadenylate synthetase 1,
           OAS1, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 200

 Score = 28.3 bits (63), Expect = 0.96
 Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 229 TKFDMAMVAFLDCLQQFKEELEKGDSEFHLPYNMDSKGKIEDETTGNTYSVKYQFNSQEQ 288
            + D  +V FL  L  F+++L +        +  + + ++E       + V ++  S  +
Sbjct: 71  GRSDADLVVFLTKLTSFEDQLRR-----RGEFIQEIRRQLEACQREQKFKVTFEVQSPRR 125

Query: 289 WT-KALKFMLT 298
              +AL F+L+
Sbjct: 126 ENPRALSFVLS 136


>d2b4jc1 a.48.4.1 (C:346-426) PC4 and SFRS1-interacting protein,
           PSIP1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 81

 Score = 25.1 bits (55), Expect = 4.4
 Identities = 16/65 (24%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 74  LSSNSGIDHPLCEECTDTLLDMMDKELKNTKQDFQEYSDFLKTLELQLQYSLSQLNKFKS 133
           + ++  ID+     C + L ++    L+ T Q  Q++++ + TL+   ++ +SQ+   KS
Sbjct: 14  IKNSLKIDNLDVNRCIEALDEL--ASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKS 71

Query: 134 TNVFN 138
           T ++N
Sbjct: 72  TMLYN 76


>d1nd6a_ c.60.1.2 (A:) Prostatic acid phosphatase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 342

 Score = 26.4 bits (57), Expect = 5.4
 Identities = 20/146 (13%), Positives = 43/146 (29%), Gaps = 16/146 (10%)

Query: 104 KQDFQEYSDFLKTLELQLQYSLSQLNKFKSTNVFNATFHIWHSGHFGTINNFRLGTLPSA 163
           ++    Y DF+ TL         +L+     ++F     ++   +  +++NF   TLPS 
Sbjct: 146 QKRLHPYKDFIATL--------GKLSGLHGQDLFGIWSKVYDPLYCESVHNF---TLPSW 194

Query: 164 PVDWSEINAAWGQTALLLTALARKLNLTFQRYRIVPYGNHSYIEDTTEHKNLPLFASGGA 223
             + +       +   L       L    ++           + +   H           
Sbjct: 195 ATEDT-----MTKLRELSELSLLSLYGIHKQKEKSRLQGGVLVNEILNHMKRATQIPSYK 249

Query: 224 KFFWDTKFDMAMVAFLDCLQQFKEEL 249
           K    +  D  +      L  +   L
Sbjct: 250 KLIMYSAHDTTVSGLQMALDVYNGLL 275


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.132    0.402 

Gapped
Lambda     K      H
   0.267   0.0549    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,154,542
Number of extensions: 50659
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 5
Length of query: 318
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 233
Effective length of database: 1,240,546
Effective search space: 289047218
Effective search space used: 289047218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.6 bits)