BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16002
         (229 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P23508|CRCM_HUMAN Colorectal mutant cancer protein OS=Homo sapiens GN=MCC PE=1 SV=2
          Length = 829

 Score = 84.3 bits (207), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 85/266 (31%), Positives = 136/266 (51%), Gaps = 61/266 (22%)

Query: 19  KAEMQLLLNNIDKLDKERASIGNTTVKLESYHVAISEAPKVPKSSSEARKMDLEMAVLMQ 78
           K + Q L + I +L  +RA++  T ++LES H+        P+  S+  ++DLE AVLMQ
Sbjct: 563 KEDEQRLKDYIQQLKNDRAAVKLTMLELESIHIDPLSYDVKPRGDSQ--RLDLENAVLMQ 620

Query: 79  ELLSMRED----KAEL---------------------RARIYNLEHEKDVLE-------- 105
           EL++M+E+    KA+L                     +A + ++EH K  +E        
Sbjct: 621 ELMAMKEEMAELKAQLYLLEKEKKALELKLSTREAQEQAYLVHIEHLKSEVEEQKEQRMR 680

Query: 106 ------------------------MKLNSL--ACEELTQHAGDTDDKSVENKLRERLKEM 139
                                   + L  L   C E    A  T+    E KL+ R++E+
Sbjct: 681 SLSSTSSGSKDKPGKECADAASPALSLAELRTTCSENELAAEFTNAIRREKKLKARVQEL 740

Query: 140 SQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSER 199
              LER++++ E+R  QS +  N+LK AN+ L+ ++EK KKK Q++LK+LE++++ M ER
Sbjct: 741 VSALERLTKSSEIRHQQSAEFVNDLKRANSNLVAAYEKAKKKHQNKLKKLESQMMAMVER 800

Query: 200 HATQVQHLKQRIVSLEEHIARYNSKE 225
           H TQV+ LKQRI  LEE  +R ++ E
Sbjct: 801 HETQVRMLKQRIALLEEENSRPHTNE 826


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.124    0.317 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,305,516
Number of Sequences: 539616
Number of extensions: 2643186
Number of successful extensions: 14471
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 1121
Number of HSP's that attempted gapping in prelim test: 13139
Number of HSP's gapped (non-prelim): 2337
length of query: 229
length of database: 191,569,459
effective HSP length: 113
effective length of query: 116
effective length of database: 130,592,851
effective search space: 15148770716
effective search space used: 15148770716
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)