Query psy16002
Match_columns 229
No_of_seqs 37 out of 39
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 18:27:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16002.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16002hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10506 MCC-bdg_PDZ: PDZ doma 99.0 5E-09 1.1E-13 77.9 8.6 66 131-198 2-67 (67)
2 PF00038 Filament: Intermediat 96.2 0.67 1.5E-05 41.5 17.5 195 23-219 11-272 (312)
3 KOG0161|consensus 93.3 7 0.00015 44.8 18.7 137 80-219 1669-1818(1930)
4 KOG0977|consensus 91.4 10 0.00022 38.5 15.6 38 72-109 107-144 (546)
5 PF15450 DUF4631: Domain of un 90.7 13 0.00029 37.6 15.5 168 31-198 49-279 (531)
6 COG1196 Smc Chromosome segrega 89.3 36 0.00077 36.8 19.5 64 42-109 637-705 (1163)
7 PF00038 Filament: Intermediat 87.5 21 0.00045 32.0 14.0 134 78-212 4-152 (312)
8 PF08317 Spc7: Spc7 kinetochor 84.1 35 0.00077 31.6 17.9 85 134-219 209-293 (325)
9 PRK11637 AmiB activator; Provi 83.7 41 0.00089 32.0 20.0 27 164-190 164-190 (428)
10 PRK09039 hypothetical protein; 83.4 41 0.00088 31.7 17.0 23 74-96 42-64 (343)
11 TIGR02168 SMC_prok_B chromosom 81.9 66 0.0014 33.1 19.2 15 76-90 682-696 (1179)
12 KOG0161|consensus 81.7 1.1E+02 0.0025 35.6 19.4 128 70-199 928-1084(1930)
13 PF08614 ATG16: Autophagy prot 80.4 36 0.00078 29.1 12.1 81 23-104 27-107 (194)
14 cd07651 F-BAR_PombeCdc15_like 80.2 40 0.00086 29.4 11.6 48 143-190 91-138 (236)
15 PF10267 Tmemb_cc2: Predicted 78.0 39 0.00085 33.0 11.8 60 162-226 240-299 (395)
16 TIGR02168 SMC_prok_B chromosom 77.1 94 0.002 32.0 19.5 29 80-108 700-728 (1179)
17 KOG1853|consensus 75.6 73 0.0016 30.2 12.3 89 126-218 58-156 (333)
18 PF08317 Spc7: Spc7 kinetochor 74.3 40 0.00087 31.2 10.5 17 80-96 211-227 (325)
19 smart00787 Spc7 Spc7 kinetocho 73.6 81 0.0017 29.6 16.5 138 74-219 147-288 (312)
20 PF07888 CALCOCO1: Calcium bin 72.6 1.2E+02 0.0026 31.1 18.1 30 82-111 147-176 (546)
21 PF07106 TBPIP: Tat binding pr 71.9 43 0.00093 27.9 9.2 87 79-173 73-159 (169)
22 PF10186 Atg14: UV radiation r 70.1 74 0.0016 27.7 17.5 86 87-172 22-108 (302)
23 cd07647 F-BAR_PSTPIP The F-BAR 68.4 84 0.0018 27.7 12.4 37 155-191 102-138 (239)
24 PF05667 DUF812: Protein of un 68.1 1.5E+02 0.0032 30.4 18.7 127 70-197 320-460 (594)
25 PF10212 TTKRSYEDQ: Predicted 67.8 1.5E+02 0.0032 30.3 19.2 88 124-215 406-500 (518)
26 cd07671 F-BAR_PSTPIP1 The F-BA 67.4 95 0.0021 27.9 11.5 58 134-191 81-138 (242)
27 PRK10884 SH3 domain-containing 66.8 59 0.0013 28.8 9.4 23 156-178 129-151 (206)
28 PF14712 Snapin_Pallidin: Snap 66.8 51 0.0011 24.6 10.7 78 132-215 12-91 (92)
29 cd07652 F-BAR_Rgd1 The F-BAR ( 64.9 56 0.0012 29.0 9.0 46 146-191 98-143 (234)
30 COG3937 Uncharacterized conser 64.6 72 0.0016 26.2 8.7 83 130-218 20-106 (108)
31 PF04111 APG6: Autophagy prote 64.2 1.1E+02 0.0024 28.5 11.1 45 72-116 44-88 (314)
32 PRK10361 DNA recombination pro 62.8 1.6E+02 0.0035 29.5 12.5 106 75-180 57-200 (475)
33 KOG1029|consensus 60.3 2.6E+02 0.0057 30.5 14.9 65 129-200 488-558 (1118)
34 KOG0996|consensus 59.2 3.1E+02 0.0066 31.0 15.9 127 70-197 791-927 (1293)
35 PF12128 DUF3584: Protein of u 58.9 2.8E+02 0.006 30.4 17.5 29 82-110 604-632 (1201)
36 COG4942 Membrane-bound metallo 58.6 2E+02 0.0043 28.6 16.9 93 73-166 34-126 (420)
37 PF13490 zf-HC2: Putative zinc 57.3 13 0.00028 23.3 2.7 26 5-30 4-29 (36)
38 PF07926 TPR_MLP1_2: TPR/MLP1/ 56.1 1.1E+02 0.0023 24.8 11.2 73 75-157 56-128 (132)
39 TIGR00606 rad50 rad50. This fa 55.4 3.2E+02 0.007 30.1 16.7 18 204-221 993-1010(1311)
40 COG4026 Uncharacterized protei 54.8 69 0.0015 29.9 7.8 37 78-114 128-164 (290)
41 PF09304 Cortex-I_coil: Cortex 54.5 1.2E+02 0.0026 24.9 9.6 63 76-145 14-76 (107)
42 PF15458 NTR2: Nineteen comple 54.4 53 0.0011 29.8 7.1 40 74-113 211-250 (254)
43 cd07672 F-BAR_PSTPIP2 The F-BA 53.4 1.2E+02 0.0025 27.3 9.0 56 135-190 83-138 (240)
44 PF15272 BBP1_C: Spindle pole 52.0 1.4E+02 0.003 26.7 9.1 65 129-194 84-149 (196)
45 PRK11637 AmiB activator; Provi 51.9 2.2E+02 0.0048 27.1 19.1 14 159-172 170-183 (428)
46 TIGR00606 rad50 rad50. This fa 50.9 3.8E+02 0.0083 29.6 17.4 31 74-104 825-855 (1311)
47 PF13851 GAS: Growth-arrest sp 50.1 1.8E+02 0.0038 25.5 18.7 77 132-208 91-167 (201)
48 PF05130 FlgN: FlgN protein; 50.1 91 0.002 23.7 6.9 94 79-181 38-131 (143)
49 PRK09039 hypothetical protein; 47.6 2.5E+02 0.0054 26.5 17.7 122 82-211 78-199 (343)
50 PF09730 BicD: Microtubule-ass 46.8 3.8E+02 0.0083 28.4 15.8 13 21-33 216-228 (717)
51 PF04568 IATP: Mitochondrial A 46.1 62 0.0013 26.0 5.5 34 178-211 66-99 (100)
52 cd07656 F-BAR_srGAP The F-BAR 44.2 2E+02 0.0044 25.8 9.1 61 130-190 120-200 (241)
53 cd07673 F-BAR_FCHO2 The F-BAR 44.1 2E+02 0.0043 26.1 9.1 17 173-189 130-146 (269)
54 KOG0963|consensus 43.4 4.1E+02 0.009 27.8 14.8 159 19-185 181-343 (629)
55 PRK10884 SH3 domain-containing 42.4 2.5E+02 0.0053 24.9 10.7 27 128-154 94-120 (206)
56 KOG0048|consensus 41.5 22 0.00047 31.5 2.5 19 14-32 9-27 (238)
57 PF09726 Macoilin: Transmembra 38.8 4.9E+02 0.011 27.3 18.5 45 73-117 427-485 (697)
58 COG3883 Uncharacterized protei 38.6 3.4E+02 0.0073 25.4 10.1 37 182-218 78-114 (265)
59 KOG0994|consensus 38.4 6.8E+02 0.015 28.9 14.1 183 9-215 1166-1367(1758)
60 PF03962 Mnd1: Mnd1 family; I 37.9 2.7E+02 0.0059 24.1 9.8 91 62-167 60-150 (188)
61 cd07653 F-BAR_CIP4-like The F- 37.9 2.4E+02 0.0052 24.5 8.4 37 131-167 116-152 (251)
62 TIGR02231 conserved hypothetic 37.6 4E+02 0.0087 26.1 11.1 95 84-196 70-171 (525)
63 TIGR03752 conj_TIGR03752 integ 36.1 4.7E+02 0.01 26.4 11.3 67 132-198 64-130 (472)
64 PF09789 DUF2353: Uncharacteri 35.5 4E+02 0.0088 25.5 16.7 89 18-115 21-116 (319)
65 PF10168 Nup88: Nuclear pore c 35.2 5.5E+02 0.012 27.0 12.0 99 72-192 573-672 (717)
66 cd07674 F-BAR_FCHO1 The F-BAR 34.7 3.4E+02 0.0073 24.3 9.2 20 172-191 122-141 (261)
67 PF12128 DUF3584: Protein of u 34.7 6.6E+02 0.014 27.7 19.3 46 175-220 415-460 (1201)
68 PF07716 bZIP_2: Basic region 34.2 1.6E+02 0.0034 20.3 6.6 30 184-217 25-54 (54)
69 cd07648 F-BAR_FCHO The F-BAR ( 34.2 3.3E+02 0.0071 24.0 13.0 25 134-158 116-140 (261)
70 PF08826 DMPK_coil: DMPK coile 34.1 1.9E+02 0.0041 21.2 6.4 39 74-112 14-52 (61)
71 PF02841 GBP_C: Guanylate-bind 34.1 3.6E+02 0.0078 24.5 12.3 28 188-215 270-297 (297)
72 PRK02224 chromosome segregatio 34.1 5.4E+02 0.012 26.5 19.6 34 76-109 204-237 (880)
73 PF03127 GAT: GAT domain; Int 33.2 71 0.0015 24.5 3.9 39 128-178 49-87 (100)
74 PF10498 IFT57: Intra-flagella 32.7 4.6E+02 0.0099 25.2 12.0 102 84-185 212-320 (359)
75 PF10224 DUF2205: Predicted co 32.5 1.3E+02 0.0028 23.3 5.1 34 73-106 18-51 (80)
76 PF12777 MT: Microtubule-bindi 32.5 4.2E+02 0.0091 24.7 9.9 68 131-199 246-313 (344)
77 KOG0996|consensus 32.1 8.1E+02 0.017 27.9 18.4 88 19-111 209-307 (1293)
78 PRK10698 phage shock protein P 32.0 3.6E+02 0.0079 23.9 17.6 42 76-117 36-77 (222)
79 PF01576 Myosin_tail_1: Myosin 31.8 15 0.00033 38.6 0.0 136 82-218 613-759 (859)
80 KOG0977|consensus 31.8 5.9E+02 0.013 26.2 17.1 142 68-209 32-229 (546)
81 PF07888 CALCOCO1: Calcium bin 30.6 6.2E+02 0.013 26.1 19.5 22 129-150 215-236 (546)
82 PF05384 DegS: Sensor protein 30.3 3.5E+02 0.0077 23.2 14.0 111 69-183 25-157 (159)
83 KOG4674|consensus 30.3 9.9E+02 0.021 28.4 16.8 93 75-167 728-838 (1822)
84 PF10473 CENP-F_leu_zip: Leuci 30.2 3.4E+02 0.0073 22.9 19.1 129 78-214 10-138 (140)
85 PF00249 Myb_DNA-binding: Myb- 29.8 52 0.0011 21.7 2.3 26 15-40 2-28 (48)
86 PF05622 HOOK: HOOK protein; 29.4 43 0.00093 34.2 2.7 45 129-173 241-288 (713)
87 PF05529 Bap31: B-cell recepto 29.0 3.5E+02 0.0077 22.8 10.1 39 175-217 152-190 (192)
88 PF14282 FlxA: FlxA-like prote 28.3 3E+02 0.0064 21.7 7.8 58 126-205 18-79 (106)
89 PF11932 DUF3450: Protein of u 28.3 4.2E+02 0.0091 23.4 12.1 79 74-166 38-116 (251)
90 PF04111 APG6: Autophagy prote 28.1 3.3E+02 0.0073 25.4 8.1 44 66-109 52-95 (314)
91 PF07111 HCR: Alpha helical co 28.0 7.7E+02 0.017 26.4 13.0 35 170-204 155-189 (739)
92 PF14193 DUF4315: Domain of un 27.8 1.3E+02 0.0028 23.3 4.5 33 76-108 6-38 (83)
93 PF15254 CCDC14: Coiled-coil d 27.7 1.2E+02 0.0026 32.6 5.5 52 63-114 486-537 (861)
94 PF06785 UPF0242: Uncharacteri 27.5 6.1E+02 0.013 25.1 13.1 76 136-211 87-175 (401)
95 PRK02224 chromosome segregatio 26.4 7.3E+02 0.016 25.6 19.5 44 126-169 536-579 (880)
96 PRK09174 F0F1 ATP synthase sub 26.4 4.5E+02 0.0097 23.1 12.6 29 128-156 95-123 (204)
97 KOG1853|consensus 26.0 5.9E+02 0.013 24.4 16.6 72 142-217 95-179 (333)
98 TIGR02680 conserved hypothetic 25.8 9.8E+02 0.021 26.9 18.3 86 130-216 307-393 (1353)
99 PF14992 TMCO5: TMCO5 family 25.6 4.8E+02 0.01 24.6 8.6 61 135-196 110-170 (280)
100 PF08385 DHC_N1: Dynein heavy 25.2 5.8E+02 0.013 24.5 9.4 89 128-216 225-337 (579)
101 KOG4797|consensus 25.0 1.2E+02 0.0026 25.3 4.0 37 66-105 51-87 (123)
102 PF14257 DUF4349: Domain of un 24.3 97 0.0021 27.4 3.7 39 71-109 155-193 (262)
103 PF09726 Macoilin: Transmembra 24.1 8.5E+02 0.019 25.6 18.3 32 18-49 416-447 (697)
104 PF10146 zf-C4H2: Zinc finger- 24.0 5.4E+02 0.012 23.2 14.6 103 85-199 1-103 (230)
105 PF03954 Lectin_N: Hepatic lec 23.4 4.7E+02 0.01 22.3 7.8 21 73-93 57-77 (138)
106 PF08232 Striatin: Striatin fa 22.7 90 0.002 25.7 2.9 21 86-106 26-46 (134)
107 PF02646 RmuC: RmuC family; I 22.6 3.5E+02 0.0077 24.9 7.1 49 131-179 10-68 (304)
108 PF03245 Phage_lysis: Bacterio 22.5 4.2E+02 0.0092 21.5 7.6 38 182-219 22-59 (125)
109 COG1196 Smc Chromosome segrega 22.4 1E+03 0.023 26.0 19.2 24 85-108 821-844 (1163)
110 KOG3231|consensus 21.8 2.4E+02 0.0052 25.3 5.5 40 155-198 11-50 (208)
111 PF10186 Atg14: UV radiation r 21.8 5.3E+02 0.012 22.3 19.2 38 128-165 71-108 (302)
112 PRK13729 conjugal transfer pil 21.7 2.9E+02 0.0062 27.9 6.7 18 181-198 101-118 (475)
113 PF15112 DUF4559: Domain of un 21.6 3.9E+02 0.0084 25.6 7.2 50 126-176 227-277 (307)
114 KOG4809|consensus 21.5 9.6E+02 0.021 25.2 12.5 74 91-174 330-413 (654)
115 PF04977 DivIC: Septum formati 21.3 2.5E+02 0.0055 19.7 4.8 29 81-109 20-48 (80)
116 smart00717 SANT SANT SWI3, AD 21.3 1.1E+02 0.0023 18.7 2.5 25 15-39 2-27 (49)
117 PF02994 Transposase_22: L1 tr 21.0 3.5E+02 0.0076 25.8 6.9 40 184-223 151-193 (370)
118 PF11961 DUF3475: Domain of un 20.6 1.2E+02 0.0026 22.2 2.9 36 4-41 9-44 (57)
119 PF14357 DUF4404: Domain of un 20.4 3.4E+02 0.0074 20.7 5.5 80 131-214 1-80 (85)
120 TIGR01837 PHA_granule_1 poly(h 20.3 4.6E+02 0.01 21.0 10.2 79 142-220 27-114 (118)
121 PF07195 FliD_C: Flagellar hoo 20.1 3.3E+02 0.0072 23.8 6.2 50 174-223 190-239 (239)
122 PF14662 CCDC155: Coiled-coil 20.0 6.4E+02 0.014 22.6 15.9 24 174-197 169-192 (193)
No 1
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=98.95 E-value=5e-09 Score=77.93 Aligned_cols=66 Identities=24% Similarity=0.275 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q psy16002 131 KLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSE 198 (229)
Q Consensus 131 ~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~ 198 (229)
+|+++|++|....+.+..+.+.+++|+++|+.||.++||+++.. +.++||++|+++++.+|..|++
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~al--rlal~ys~r~~e~~~~llal~E 67 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATAL--RLALKYSERCKEAYEVLLALVE 67 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHHHhhC
Confidence 68999999999999999999999999999999999999999988 9999999999999999999863
No 2
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.21 E-value=0.67 Score=41.46 Aligned_cols=195 Identities=18% Similarity=0.238 Sum_probs=108.4
Q ss_pred HHHHHHH---HhhHhhhhhhccCcccCCCcccccCCCC--------CCCCchhhhccCchHHHHHHHHHHHhhHHHHHHH
Q psy16002 23 QLLLNNI---DKLDKERASIGNTTVKLESYHVAISEAP--------KVPKSSSEARKMDLEMAVLMQELLSMREDKAELR 91 (229)
Q Consensus 23 ~rLr~yi---~~Lk~~Ra~vk~t~v~Les~~~~~~p~~--------~~~~a~~~~q~~dLE~avimQEL~a~RE~~aeLk 91 (229)
.||-+|| +.|-.....+..-+..+.++... +.+ ...........+-.|++.+..++-.++.++.+++
T Consensus 11 dRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~--~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r 88 (312)
T PF00038_consen 11 DRLASYIEKVRFLEQENKRLESEIEELREKKGE--EVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLR 88 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccc--cCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHH
Confidence 4677777 44555666666655555555322 211 0011111233556789999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhHHhh----------h--------------h----cCCCch----------hhhHHHHH
Q psy16002 92 ARIYNLEHEKDVLEMKLNSLACEELT----------Q--------------H----AGDTDD----------KSVENKLR 133 (229)
Q Consensus 92 ~~l~llEkEK~~lElr~~~~~aq~~a----------q--------------~----a~lt~~----------lsRe~~Lk 133 (229)
.++......+..++--+..++..... + | ..+-.. ..+..+|.
T Consensus 89 ~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~ 168 (312)
T PF00038_consen 89 RKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLS 168 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccch
Confidence 99999888888888777555322222 0 0 111111 12355677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhHHH-------------HHHHHhhhhhhHHHHHHHHHHHHH
Q psy16002 134 ERLKEMSQTLERVSRTYELRQM-----QSTQLTNELKMANNAL-------------MNSFEKGKKKSQSRLKRLENEIVI 195 (229)
Q Consensus 134 ~rlqeL~~~Le~~~k~~e~r~~-----QsaElv~dL~kAnsaL-------------v~afe~AKrK~q~r~kKLEqQm~~ 195 (229)
.-|.+++..++.++..+..... +..++..-..+.++++ +..+..=--+.+.+...||.+|..
T Consensus 169 ~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~ 248 (312)
T PF00038_consen 169 AALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRE 248 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHH
Confidence 7777777777766655543211 1111111111111111 122222222345677888999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhc
Q psy16002 196 MSERHATQVQHLKQRIVSLEEHIA 219 (229)
Q Consensus 196 M~~rh~~qv~~L~~~~~~LE~~~~ 219 (229)
+..++..++......|..||.++.
T Consensus 249 le~~~~~~~~~~~~~i~~le~el~ 272 (312)
T PF00038_consen 249 LEQRLDEEREEYQAEIAELEEELA 272 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccchhHH
Confidence 999999999999999888888764
No 3
>KOG0161|consensus
Probab=93.27 E-value=7 Score=44.80 Aligned_cols=137 Identities=24% Similarity=0.338 Sum_probs=87.1
Q ss_pred HHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH------
Q psy16002 80 LLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMSQTLERVSRTYELR------ 153 (229)
Q Consensus 80 L~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq~a~lt~~lsRe~~Lk~rlqeL~~~Le~~~k~~e~r------ 153 (229)
+-+.+.++.+|+..+.-+++.|+.+|.-+.-..-...--+++.+...+...+|-..|..|-..|+.....++.-
T Consensus 1669 ~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kk 1748 (1930)
T KOG0161|consen 1669 LAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKK 1748 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44667777788888888888888887776522222222234455556677777777777777777777655432
Q ss_pred -HHHHHHHHHHHHhhhHH------HHHHHHhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Q psy16002 154 -QMQSTQLTNELKMANNA------LMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEHIA 219 (229)
Q Consensus 154 -~~QsaElv~dL~kAnsa------Lv~afe~AKrK~q~r~kKLEqQm~~M~~rh~~qv~~L~~~~~~LE~~~~ 219 (229)
..+.+.+..||...-+. +-..+++..|=.|.++..+|+-. ..+-..+++.|+++|+.||..-.
T Consensus 1749 a~~~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a---~~~~k~~i~~Learir~LE~~l~ 1818 (1930)
T KOG0161|consen 1749 AQADAAKLAEELRKEQETSQKLERLKKSLERQVKDLQLRLDEAEQAA---LKGGKKQIAKLEARIRELESELE 1818 (1930)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhccHHHHHHHHHHHHHHHHHHh
Confidence 34566677777755443 33445555555555555555432 23445788999999999997654
No 4
>KOG0977|consensus
Probab=91.36 E-value=10 Score=38.47 Aligned_cols=38 Identities=34% Similarity=0.414 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy16002 72 EMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLN 109 (229)
Q Consensus 72 E~avimQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~ 109 (229)
+.+-+..|+-..++++.+|+.++...+++..+....+.
T Consensus 107 ~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~ 144 (546)
T KOG0977|consen 107 ERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLD 144 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 77888999999999999999999999999888887774
No 5
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=90.67 E-value=13 Score=37.56 Aligned_cols=168 Identities=19% Similarity=0.229 Sum_probs=98.2
Q ss_pred hhHhhhhhhccCcccCCCcccccCCCCCCCCchhh-hccC--chHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhHH--
Q psy16002 31 KLDKERASIGNTTVKLESYHVAISEAPKVPKSSSE-ARKM--DLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLE-- 105 (229)
Q Consensus 31 ~Lk~~Ra~vk~t~v~Les~~~~~~p~~~~~~a~~~-~q~~--dLE~avimQEL~a~RE~~aeLk~~l~llEkEK~~lE-- 105 (229)
-|..=|+-|..-..+|....-+|-|.|.+|-.++- ...| .-=|-.+=.=|+.+||.+.+++-+..+-+.|+.+.+
T Consensus 49 el~qvr~~~~~Q~seL~~l~~ev~~~~~~peke~~~~~~~~~~n~m~~lD~rLvevre~L~~irr~q~~q~~erk~~~qe 128 (531)
T PF15450_consen 49 ELLQVRARVQLQDSELMQLRQEVKQRAQVPEKEACEPSSIQNQNQMQQLDKRLVEVREALTQIRRKQALQDSERKGSEQE 128 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCCCccchhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 34444544444444444444444343333322221 1111 222334445689999999999988888777766544
Q ss_pred --HHHHHH----HhHHhh----hh-----------------cC-------CCc-----hhhhHHHHHHHHHHHHHHHHHH
Q psy16002 106 --MKLNSL----ACEELT----QH-----------------AG-------DTD-----DKSVENKLRERLKEMSQTLERV 146 (229)
Q Consensus 106 --lr~~~~----~aq~~a----q~-----------------a~-------lt~-----~lsRe~~Lk~rlqeL~~~Le~~ 146 (229)
+|++.+ +.++.+ ++ +. +++ ++.|+.+|++-||.-..+||+.
T Consensus 129 ~~~rl~~L~~~Lrqee~~re~a~~aL~k~qe~~~~k~d~E~arm~aqi~~l~eEmS~r~l~reakl~~~lqk~f~alEk~ 208 (531)
T PF15450_consen 129 AGLRLSKLQDMLRQEEQGREDACSALQKSQEEDSQKVDNEVARMQAQITKLGEEMSLRFLKREAKLCSFLQKSFLALEKR 208 (531)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhcchhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555433 222222 11 00 111 1558999999999988899998
Q ss_pred HHHH---HHHHHHHHHHHHH-----HHhhhHHHHHHHHhhhh-----------hhHHHHHHHHHHHHHHHH
Q psy16002 147 SRTY---ELRQMQSTQLTNE-----LKMANNALMNSFEKGKK-----------KSQSRLKRLENEIVIMSE 198 (229)
Q Consensus 147 ~k~~---e~r~~QsaElv~d-----L~kAnsaLv~afe~AKr-----------K~q~r~kKLEqQm~~M~~ 198 (229)
-+.+ +.++..+...-.+ |..-+...+.++.+-+. |+..++++|-.=++.|..
T Consensus 209 mka~e~~rl~~E~~lreElE~rW~~lq~l~Ee~l~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~Ltk 279 (531)
T PF15450_consen 209 MKAQESSRLRTERSLREELESRWQKLQELTEERLRALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQLTK 279 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHH
Confidence 8877 4445444433333 55666667777766544 778888898888887753
No 6
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=89.27 E-value=36 Score=36.81 Aligned_cols=64 Identities=25% Similarity=0.279 Sum_probs=30.5
Q ss_pred CcccCCCcccccCCCCCC----CCchh-hhccCchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy16002 42 TTVKLESYHVAISEAPKV----PKSSS-EARKMDLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLN 109 (229)
Q Consensus 42 t~v~Les~~~~~~p~~~~----~~a~~-~~q~~dLE~avimQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~ 109 (229)
-+|.|+|..++ |.+.. +.+.+ ..+.. +...+..++..++.....+...+..++.+-+.++..+.
T Consensus 637 riVTl~G~~~~--~~G~~tGG~~~~~~~~~~~~--~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1163)
T COG1196 637 RIVTLDGDLVE--PSGSITGGSRNKRSSLAQKR--ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLE 705 (1163)
T ss_pred eEEecCCcEEe--CCeeeecCCccccchhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777887777 43211 11111 11112 33345555555555555555555555555555544443
No 7
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=87.50 E-value=21 Score=31.99 Aligned_cols=134 Identities=21% Similarity=0.328 Sum_probs=82.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhh-----------hcCC---Cchhhh-HHHHHHHHHHHHHH
Q psy16002 78 QELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQ-----------HAGD---TDDKSV-ENKLRERLKEMSQT 142 (229)
Q Consensus 78 QEL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq-----------~a~l---t~~lsR-e~~Lk~rlqeL~~~ 142 (229)
++|..+=+-+|.-..++..||.+.+.|+..+..+..-.... +..+ -+..+. ...|...+..+...
T Consensus 4 ~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e 83 (312)
T PF00038_consen 4 EELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEE 83 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHH
Confidence 46777778889999999999999999999997654442111 0111 000111 22444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy16002 143 LERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIV 212 (229)
Q Consensus 143 Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~rh~~qv~~L~~~~~ 212 (229)
++......+.-......+-.++......+- ....++-.-+.++.-|+.++.-+..-|.+++..|...+.
T Consensus 84 ~~~~r~k~e~e~~~~~~le~el~~lrk~ld-~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~ 152 (312)
T PF00038_consen 84 LEDLRRKYEEELAERKDLEEELESLRKDLD-EETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQ 152 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 555555555444444444444444443333 334556668889999999999999999999998888775
No 8
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=84.10 E-value=35 Score=31.56 Aligned_cols=85 Identities=19% Similarity=0.266 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy16002 134 ERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVS 213 (229)
Q Consensus 134 ~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~rh~~qv~~L~~~~~~ 213 (229)
..|..+...|......-..+.....++-.+|..-+.. +.....-+.+.+.++..++.....-...-..+|..|+.....
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~-i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~ 287 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEK-IEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDA 287 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3455566666666666666666777777777766665 466677777778888888877776666678899999999999
Q ss_pred HHHhhc
Q psy16002 214 LEEHIA 219 (229)
Q Consensus 214 LE~~~~ 219 (229)
||.-..
T Consensus 288 Le~~~g 293 (325)
T PF08317_consen 288 LEKLTG 293 (325)
T ss_pred HHHHHC
Confidence 998653
No 9
>PRK11637 AmiB activator; Provisional
Probab=83.69 E-value=41 Score=32.00 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=11.8
Q ss_pred HHhhhHHHHHHHHhhhhhhHHHHHHHH
Q psy16002 164 LKMANNALMNSFEKGKKKSQSRLKRLE 190 (229)
Q Consensus 164 L~kAnsaLv~afe~AKrK~q~r~kKLE 190 (229)
+-.+...++..|..++++.....+.|+
T Consensus 164 i~~~d~~~l~~l~~~~~~L~~~k~~le 190 (428)
T PRK11637 164 LNQARQETIAELKQTREELAAQKAELE 190 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 10
>PRK09039 hypothetical protein; Validated
Probab=83.35 E-value=41 Score=31.70 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=14.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Q psy16002 74 AVLMQELLSMREDKAELRARIYN 96 (229)
Q Consensus 74 avimQEL~a~RE~~aeLk~~l~l 96 (229)
.++-|++-...+++++|..+|..
T Consensus 42 ~fLs~~i~~~~~eL~~L~~qIa~ 64 (343)
T PRK09039 42 FFLSREISGKDSALDRLNSQIAE 64 (343)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 44556666666666666666543
No 11
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=81.89 E-value=66 Score=33.10 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=5.7
Q ss_pred HHHHHHHhhHHHHHH
Q psy16002 76 LMQELLSMREDKAEL 90 (229)
Q Consensus 76 imQEL~a~RE~~aeL 90 (229)
+..++.+.+..+.++
T Consensus 682 l~~~~~~l~~~l~~~ 696 (1179)
T TIGR02168 682 LEEKIEELEEKIAEL 696 (1179)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333343333333333
No 12
>KOG0161|consensus
Probab=81.67 E-value=1.1e+02 Score=35.64 Aligned_cols=128 Identities=27% Similarity=0.325 Sum_probs=72.3
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcCCCchhhhHH-------------------
Q psy16002 70 DLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVEN------------------- 130 (229)
Q Consensus 70 dLE~avimQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq~a~lt~~lsRe~------------------- 130 (229)
..++--+.+++..+++.+.++-..+..++.||..++-++..+......+-- .-+++.+++
T Consensus 928 e~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e-~~~kL~kekk~lEe~~~~l~~~l~~~ee 1006 (1930)
T KOG0161|consen 928 ERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDE-NISKLSKEKKELEERIRELQDDLQAEEE 1006 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455668899999999999999999999999999998766554444100 000111111
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Q psy16002 131 ----------KLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSER 199 (229)
Q Consensus 131 ----------~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~r 199 (229)
+|-.+|.++-..|++-.+.....-..-..|..+| +++..-+.-+..-+...+.++++.|-++..|..+
T Consensus 1007 k~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el-~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k 1084 (1930)
T KOG0161|consen 1007 KAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGEL-KDLQESIEELKKQKEELDNQLKKKESELSQLQSK 1084 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223444444444444333333333334555555 3333333335555666666677777666666543
No 13
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=80.45 E-value=36 Score=29.13 Aligned_cols=81 Identities=22% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHhhhhhhccCcccCCCcccccCCCCCCCCchhhhccCchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhh
Q psy16002 23 QLLLNNIDKLDKERASIGNTTVKLESYHVAISEAPKVPKSSSEARKMDLEMAVLMQELLSMREDKAELRARIYNLEHEKD 102 (229)
Q Consensus 23 ~rLr~yi~~Lk~~Ra~vk~t~v~Les~~~~~~p~~~~~~a~~~~q~~dLE~avimQEL~a~RE~~aeLk~~l~llEkEK~ 102 (229)
++|-+.+..|+.....+...+..+++++.. .|.+..+...+....++--.+.+..||....-.+.++..++..+.-+-.
T Consensus 27 ~~L~d~~~~l~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~ 105 (194)
T PF08614_consen 27 NRLADRTSLLKAENEQLQPEAESLPSSSSS-SPSESGSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQ 105 (194)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 677777888877777766654433442221 1211122222222233333344666666666666666666655544433
Q ss_pred hH
Q psy16002 103 VL 104 (229)
Q Consensus 103 ~l 104 (229)
.+
T Consensus 106 ~l 107 (194)
T PF08614_consen 106 EL 107 (194)
T ss_dssp --
T ss_pred hh
Confidence 33
No 14
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=80.16 E-value=40 Score=29.45 Aligned_cols=48 Identities=13% Similarity=0.230 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHH
Q psy16002 143 LERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLE 190 (229)
Q Consensus 143 Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLE 190 (229)
+.......+.++......+..+.+.......++++||++|+..++.+|
T Consensus 91 l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e 138 (236)
T cd07651 91 LAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKIN 138 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 333344444444455555556666666666666777777766666655
No 15
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=77.97 E-value=39 Score=32.97 Aligned_cols=60 Identities=25% Similarity=0.492 Sum_probs=44.8
Q ss_pred HHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcccccccc
Q psy16002 162 NELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEHIARYNSKER 226 (229)
Q Consensus 162 ~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~rh~~qv~~L~~~~~~LE~~~~~~~~~~~ 226 (229)
.++++--..+.+++.-.+=| ..+||.|+-++.+-|-.++-+|||.++..|+.. -|...+|
T Consensus 240 ~~~~~e~~~~~~~LqEEr~R----~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~-~Yqs~eR 299 (395)
T PF10267_consen 240 EQYQREYQFILEALQEERYR----YERLEEQLNDLTELHQNEIYNLKQELASMEEKM-AYQSYER 299 (395)
T ss_pred HHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHH
Confidence 34555556667777665544 457999999999999999999999999998753 4444443
No 16
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=77.06 E-value=94 Score=32.03 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=12.9
Q ss_pred HHHhhHHHHHHHHHHHHHHhhhhhHHHHH
Q psy16002 80 LLSMREDKAELRARIYNLEHEKDVLEMKL 108 (229)
Q Consensus 80 L~a~RE~~aeLk~~l~llEkEK~~lElr~ 108 (229)
+......+.++..++..++.+...++..+
T Consensus 700 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 728 (1179)
T TIGR02168 700 LAELRKELEELEEELEQLRKELEELSRQI 728 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 17
>KOG1853|consensus
Probab=75.60 E-value=73 Score=30.22 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=66.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHH--------
Q psy16002 126 KSVENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMS-------- 197 (229)
Q Consensus 126 lsRe~~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~-------- 197 (229)
.+|..+|..+-|-|...++...-.-+..|.|...-+.-|-.-+|-+-.- |--++..+++|||---.+.
T Consensus 58 etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~ai----keql~kyiReLEQaNDdLErakRati~ 133 (333)
T KOG1853|consen 58 ETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAI----KEQLRKYIRELEQANDDLERAKRATIY 133 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhccHHHHhhhhhhh
Confidence 7799999999999999999999999999999999998888877765332 2334556889998654443
Q ss_pred --HhHHHHHHHHHHHHHHHHHhh
Q psy16002 198 --ERHATQVQHLKQRIVSLEEHI 218 (229)
Q Consensus 198 --~rh~~qv~~L~~~~~~LE~~~ 218 (229)
+.-.+.++.--.+++-||.+-
T Consensus 134 sleDfeqrLnqAIErnAfLESEL 156 (333)
T KOG1853|consen 134 SLEDFEQRLNQAIERNAFLESEL 156 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 234455666667777777653
No 18
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=74.30 E-value=40 Score=31.19 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=6.7
Q ss_pred HHHhhHHHHHHHHHHHH
Q psy16002 80 LLSMREDKAELRARIYN 96 (229)
Q Consensus 80 L~a~RE~~aeLk~~l~l 96 (229)
|-++|.+++++...|..
T Consensus 211 L~~lr~eL~~~~~~i~~ 227 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEA 227 (325)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444443333
No 19
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=73.61 E-value=81 Score=29.61 Aligned_cols=138 Identities=16% Similarity=0.165 Sum_probs=78.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhh---hcCCCch-hhhHHHHHHHHHHHHHHHHHHHHH
Q psy16002 74 AVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQ---HAGDTDD-KSVENKLRERLKEMSQTLERVSRT 149 (229)
Q Consensus 74 avimQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq---~a~lt~~-lsRe~~Lk~rlqeL~~~Le~~~k~ 149 (229)
.++...+-.|+++..-|..++.++..-.-.+..+.+.+......- ..-.... .+=-..+|+.|.++...++...+.
T Consensus 147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~ 226 (312)
T smart00787 147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKK 226 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666777777777777766655555555444333222210 0000000 111224445555555555555554
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Q psy16002 150 YELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEHIA 219 (229)
Q Consensus 150 ~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~rh~~qv~~L~~~~~~LE~~~~ 219 (229)
-.....|..++..++. +...=+-..++++..+|.....-..--..++..|+++...||.-..
T Consensus 227 l~e~~~~l~~l~~~I~--------~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l~g 288 (312)
T smart00787 227 LEELEEELQELESKIE--------DLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLTG 288 (312)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 4444444444444433 3333455567778888888877777888999999999999998654
No 20
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=72.58 E-value=1.2e+02 Score=31.08 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=18.0
Q ss_pred HhhHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy16002 82 SMREDKAELRARIYNLEHEKDVLEMKLNSL 111 (229)
Q Consensus 82 a~RE~~aeLk~~l~llEkEK~~lElr~~~~ 111 (229)
.+-.++.+|......++++...+..++..+
T Consensus 147 ~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l 176 (546)
T PF07888_consen 147 ECQKEKEELLKENEQLEEEVEQLREEVERL 176 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666666666666544
No 21
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=71.86 E-value=43 Score=27.85 Aligned_cols=87 Identities=23% Similarity=0.325 Sum_probs=44.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16002 79 ELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMSQTLERVSRTYELRQMQST 158 (229)
Q Consensus 79 EL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq~a~lt~~lsRe~~Lk~rlqeL~~~Le~~~k~~e~r~~Qsa 158 (229)
|+.++-.++.+|+.++..++.+-..|+-.++++.+..+.. +=...-..|+..+..|...|+....++.. -+.
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~-----el~~~i~~l~~e~~~l~~kL~~l~~~~~~---vs~ 144 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNE-----ELREEIEELEEEIEELEEKLEKLRSGSKP---VSP 144 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHhCCCC---CCH
Confidence 4566666677777777777777777777776666554430 00112234444455555444444432222 334
Q ss_pred HHHHHHHhhhHHHHH
Q psy16002 159 QLTNELKMANNALMN 173 (229)
Q Consensus 159 Elv~dL~kAnsaLv~ 173 (229)
+=+..+.+.+.....
T Consensus 145 ee~~~~~~~~~~~~k 159 (169)
T PF07106_consen 145 EEKEKLEKEYKKWRK 159 (169)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444443333
No 22
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=70.09 E-value=74 Score=27.69 Aligned_cols=86 Identities=22% Similarity=0.322 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhHHhh-hhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16002 87 KAELRARIYNLEHEKDVLEMKLNSLACEELT-QHAGDTDDKSVENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELK 165 (229)
Q Consensus 87 ~aeLk~~l~llEkEK~~lElr~~~~~aq~~a-q~a~lt~~lsRe~~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~ 165 (229)
+.+++..+..+..++..+.-++...-..... ...+.......-..++.++..|...+++..+.-+.......++-..|.
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~ 101 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLE 101 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555432221110 000000001122344455555555555555555555555555555555
Q ss_pred hhhHHHH
Q psy16002 166 MANNALM 172 (229)
Q Consensus 166 kAnsaLv 172 (229)
...+.|.
T Consensus 102 ~~~~~l~ 108 (302)
T PF10186_consen 102 QRRSRLS 108 (302)
T ss_pred HHHHHHH
Confidence 5444444
No 23
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=68.37 E-value=84 Score=27.66 Aligned_cols=37 Identities=11% Similarity=0.196 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHH
Q psy16002 155 MQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLEN 191 (229)
Q Consensus 155 ~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEq 191 (229)
......+..+.+.-..+...+++||++|...++.+|.
T Consensus 102 K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~ 138 (239)
T cd07647 102 KKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555455566667777777777777664
No 24
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=68.11 E-value=1.5e+02 Score=30.43 Aligned_cols=127 Identities=23% Similarity=0.313 Sum_probs=74.2
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcCCCchhhhHHHHHHHHHHHH----HHHHH
Q psy16002 70 DLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMS----QTLER 145 (229)
Q Consensus 70 dLE~avimQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq~a~lt~~lsRe~~Lk~rlqeL~----~~Le~ 145 (229)
.=+..-..+||-.+.+.+.+|..++..++.+...+...+..........-+ ....+..+.+++.+.-+|+ .++++
T Consensus 320 ~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~-~~~~le~~~~l~~k~~~lL~d~e~ni~k 398 (594)
T PF05667_consen 320 EDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEA-ENEELEEELKLKKKTVELLPDAEENIAK 398 (594)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 334567789999999999999999999998888887766543333222100 1111223445555544443 33444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhh----------HHHHHHHHHHHHHHH
Q psy16002 146 VSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKS----------QSRLKRLENEIVIMS 197 (229)
Q Consensus 146 ~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~----------q~r~kKLEqQm~~M~ 197 (229)
...--+...+-..+|....-+....|..-|+..+.++ ...+|.+.++|-.+.
T Consensus 399 L~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~ 460 (594)
T PF05667_consen 399 LQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIE 460 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555666666666666666666665432 344555555555444
No 25
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=67.82 E-value=1.5e+02 Score=30.27 Aligned_cols=88 Identities=16% Similarity=0.327 Sum_probs=49.4
Q ss_pred chhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy16002 124 DDKSVENKLR----ERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANN---ALMNSFEKGKKKSQSRLKRLENEIVIM 196 (229)
Q Consensus 124 ~~lsRe~~Lk----~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAns---aLv~afe~AKrK~q~r~kKLEqQm~~M 196 (229)
|..+||..++ .||.+|...+...-.+...=+.++.-|..-|..+-+ .+...++.++ .++..|+.++..-
T Consensus 406 E~esRE~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~----~~i~~LqDEL~TT 481 (518)
T PF10212_consen 406 EEESREQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEAN----QNISRLQDELETT 481 (518)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3366887777 489999888877766666666666666655554332 2222222222 2444555555555
Q ss_pred HHhHHHHHHHHHHHHHHHH
Q psy16002 197 SERHATQVQHLKQRIVSLE 215 (229)
Q Consensus 197 ~~rh~~qv~~L~~~~~~LE 215 (229)
.--++.|+.++..-+..|-
T Consensus 482 r~NYE~QLs~MSEHLasmN 500 (518)
T PF10212_consen 482 RRNYEEQLSMMSEHLASMN 500 (518)
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 5555555555555554443
No 26
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=67.36 E-value=95 Score=27.89 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHH
Q psy16002 134 ERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLEN 191 (229)
Q Consensus 134 ~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEq 191 (229)
..|++.+..+++....-...+.....-+..+.+.-..+-..++.||++|+..++.++.
T Consensus 81 ~~L~~~~~~l~~f~~~qke~rK~~e~~~eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~ 138 (242)
T cd07671 81 GMLREELKSLEEFRERQKEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADE 138 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444334444444444444444555666666666677788888888888888774
No 27
>PRK10884 SH3 domain-containing protein; Provisional
Probab=66.84 E-value=59 Score=28.81 Aligned_cols=23 Identities=35% Similarity=0.339 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhh
Q psy16002 156 QSTQLTNELKMANNALMNSFEKG 178 (229)
Q Consensus 156 QsaElv~dL~kAnsaLv~afe~A 178 (229)
++...+++|...|+.|-.-+..+
T Consensus 129 ~~~~~~~~L~~~n~~L~~~l~~~ 151 (206)
T PRK10884 129 QSDSVINGLKEENQKLKNQLIVA 151 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666665544443
No 28
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=66.83 E-value=51 Score=24.59 Aligned_cols=78 Identities=24% Similarity=0.358 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy16002 132 LRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANN--ALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQ 209 (229)
Q Consensus 132 Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAns--aLv~afe~AKrK~q~r~kKLEqQm~~M~~rh~~qv~~L~~ 209 (229)
|.--|..+-..+..+.++-..-..+...+..+|+.-+. .....|+.++ |..++..+...|..+..+ +..++.
T Consensus 12 l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~--y~~KL~~ikkrm~~l~~~----l~~lk~ 85 (92)
T PF14712_consen 12 LEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP--YVKKLVNIKKRMSNLHER----LQKLKK 85 (92)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH--HHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 34457777777888888888888888889999987776 4555788888 999999999999888654 567777
Q ss_pred HHHHHH
Q psy16002 210 RIVSLE 215 (229)
Q Consensus 210 ~~~~LE 215 (229)
|+..|.
T Consensus 86 R~~~L~ 91 (92)
T PF14712_consen 86 RADKLQ 91 (92)
T ss_pred HHHhhc
Confidence 776654
No 29
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=64.86 E-value=56 Score=28.98 Aligned_cols=46 Identities=17% Similarity=0.131 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHH
Q psy16002 146 VSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLEN 191 (229)
Q Consensus 146 ~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEq 191 (229)
.+...+..+...-+....+.+.-..-..++++||.+|...++.+|.
T Consensus 98 l~~~~e~~RK~~ke~~~k~~k~~~~a~~~leKAK~~Y~~~c~e~Ek 143 (234)
T cd07652 98 LAKTVEKSRKSIKETGKRAEKKVQDAEAAAEKAKARYDSLADDLER 143 (234)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444555667777777777777664
No 30
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=64.57 E-value=72 Score=26.19 Aligned_cols=83 Identities=11% Similarity=0.302 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHH----HhHHHHHH
Q psy16002 130 NKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMS----ERHATQVQ 205 (229)
Q Consensus 130 ~~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~----~rh~~qv~ 205 (229)
+.+.++++.|. ..+-+.|+.-.++...||.||.+.-. .+=.-.-.|.+.+++-+.+....-. ......|.
T Consensus 20 a~~~ek~~klv---DelVkkGeln~eEak~~vddl~~q~k---~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd 93 (108)
T COG3937 20 AETAEKVQKLV---DELVKKGELNAEEAKRFVDDLLRQAK---EAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVD 93 (108)
T ss_pred HHHHHHHHHHH---HHHHHcCCCCHHHHHHHHHHHHHHHH---HHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHH
Confidence 45667777776 45567888888888889988875322 1111111223333332222222111 33446677
Q ss_pred HHHHHHHHHHHhh
Q psy16002 206 HLKQRIVSLEEHI 218 (229)
Q Consensus 206 ~L~~~~~~LE~~~ 218 (229)
.|+.+++.||.+.
T Consensus 94 ~Lerqv~~Lenk~ 106 (108)
T COG3937 94 ALERQVADLENKL 106 (108)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887764
No 31
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=64.21 E-value=1.1e+02 Score=28.51 Aligned_cols=45 Identities=27% Similarity=0.398 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHh
Q psy16002 72 EMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEEL 116 (229)
Q Consensus 72 E~avimQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq~~ 116 (229)
+-+.+..|+-.+..+..+|...+..+|+|...+...+.....+..
T Consensus 44 ~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~ 88 (314)
T PF04111_consen 44 DIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELE 88 (314)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777777777777777776666655444433
No 32
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=62.78 E-value=1.6e+02 Score=29.54 Aligned_cols=106 Identities=11% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcCCCchhhhHH------------------------
Q psy16002 75 VLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVEN------------------------ 130 (229)
Q Consensus 75 vimQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq~a~lt~~lsRe~------------------------ 130 (229)
...+++-..++++..+...+..++-+.+.++-++.+.+.....+.+-+.++..+=+
T Consensus 57 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~ 136 (475)
T PRK10361 57 HWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQ 136 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-------HHHHHHHhhhh
Q psy16002 131 -------KLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANN-------ALMNSFEKGKK 180 (229)
Q Consensus 131 -------~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAns-------aLv~afe~AKr 180 (229)
.|+++|..+...++.+-+..-..+....+-+..|...|. +|+.|+.+..|
T Consensus 137 ~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K 200 (475)
T PRK10361 137 SLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALKGDNK 200 (475)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
No 33
>KOG1029|consensus
Probab=60.27 E-value=2.6e+02 Score=30.54 Aligned_cols=65 Identities=18% Similarity=0.379 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH------HHHHHHhhhhhhHHHHHHHHHHHHHHHHhH
Q psy16002 129 ENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNA------LMNSFEKGKKKSQSRLKRLENEIVIMSERH 200 (229)
Q Consensus 129 e~~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsa------Lv~afe~AKrK~q~r~kKLEqQm~~M~~rh 200 (229)
-+.|++||+++-..|.+.+.... +|...|+...++ -+.-++.|.++-+.=++.|+.|+..++-.-
T Consensus 488 i~qlqarikE~q~kl~~l~~Ekq-------~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~ 558 (1118)
T KOG1029|consen 488 IDQLQARIKELQEKLQKLAPEKQ-------ELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKET 558 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH-------HHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788999999988887776544 344444433222 244566677777777777777766665443
No 34
>KOG0996|consensus
Probab=59.17 E-value=3.1e+02 Score=30.99 Aligned_cols=127 Identities=20% Similarity=0.260 Sum_probs=60.5
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHH---HHHhHHhhhhcC-------CCchhhhHHHHHHHHHHH
Q psy16002 70 DLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLN---SLACEELTQHAG-------DTDDKSVENKLRERLKEM 139 (229)
Q Consensus 70 dLE~avimQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~---~~~aq~~aq~a~-------lt~~lsRe~~Lk~rlqeL 139 (229)
+-...++.-++..+-|...+|..++..++-...-+...+. .+.++...+++. -++...|-+.++.+|.++
T Consensus 791 ~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l 870 (1293)
T KOG0996|consen 791 SDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEEL 870 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHH
Confidence 3333445555555555555555555555543333333221 112222222211 122233455666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy16002 140 SQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMS 197 (229)
Q Consensus 140 ~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~ 197 (229)
...++.++. .-++.++-.++=+.+-.....++++-+--=++-..|+.+|++.|..+.
T Consensus 871 ~kE~e~~qe-~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~ 927 (1293)
T KOG0996|consen 871 KKEVEELQE-KAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLT 927 (1293)
T ss_pred HHHHHHHHH-hhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhH
Confidence 777777762 222244445554444455555555544444455555555555555443
No 35
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=58.89 E-value=2.8e+02 Score=30.43 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=18.3
Q ss_pred HhhHHHHHHHHHHHHHHhhhhhHHHHHHH
Q psy16002 82 SMREDKAELRARIYNLEHEKDVLEMKLNS 110 (229)
Q Consensus 82 a~RE~~aeLk~~l~llEkEK~~lElr~~~ 110 (229)
++|+.++.+..++..+..+...+|..+..
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~ 632 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQLKQ 632 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666643
No 36
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=58.63 E-value=2e+02 Score=28.61 Aligned_cols=93 Identities=18% Similarity=0.216 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16002 73 MAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMSQTLERVSRTYEL 152 (229)
Q Consensus 73 ~avimQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq~a~lt~~lsRe~~Lk~rlqeL~~~Le~~~k~~e~ 152 (229)
.+.. +.|=.++-+++.+..+|....++.+.|+-.+..+......--..+.++-..-++++.+|-++-..|++....-+.
T Consensus 34 ~a~~-~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~ 112 (420)
T COG4942 34 AADD-KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQERE 112 (420)
T ss_pred HhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3443 556667777777777777777777777666654433332211111122223455566666666666666555566
Q ss_pred HHHHHHHHHHHHHh
Q psy16002 153 RQMQSTQLTNELKM 166 (229)
Q Consensus 153 r~~QsaElv~dL~k 166 (229)
++...++.+.-+.+
T Consensus 113 qr~~La~~L~A~~r 126 (420)
T COG4942 113 QRRRLAEQLAALQR 126 (420)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666655
No 37
>PF13490 zf-HC2: Putative zinc-finger; PDB: 2Z2S_F 2Q1Z_B 3HUG_T.
Probab=57.25 E-value=13 Score=23.28 Aligned_cols=26 Identities=19% Similarity=0.126 Sum_probs=21.3
Q ss_pred HHHHhhhccCCCCCHHHHHHHHHHHH
Q psy16002 5 YKVLLHTLQDRPDDKAEMQLLLNNID 30 (229)
Q Consensus 5 ~~~~~~~~~~~~~~~ed~~rLr~yi~ 30 (229)
+..+|+.|-|+.++.++..++..|+.
T Consensus 4 ~~~~l~~y~dg~L~~~~~~~~~~HL~ 29 (36)
T PF13490_consen 4 VRELLSAYLDGELSPEERARLEAHLA 29 (36)
T ss_dssp -HHHHHHHHCT-S-HHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999985
No 38
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=56.13 E-value=1.1e+02 Score=24.78 Aligned_cols=73 Identities=23% Similarity=0.322 Sum_probs=46.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16002 75 VLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMSQTLERVSRTYELRQ 154 (229)
Q Consensus 75 vimQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq~a~lt~~lsRe~~Lk~rlqeL~~~Le~~~k~~e~r~ 154 (229)
-.+++|-++|++..+++..+..++.+...+...+....+-- ..+...|...|.++...++....-+..-|
T Consensus 56 ~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw----------~~qk~~le~e~~~~~~r~~dL~~QN~lLh 125 (132)
T PF07926_consen 56 EDIKELQQLREELQELQQEINELKAEAESAKAELEESEASW----------EEQKEQLEKELSELEQRIEDLNEQNKLLH 125 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999988888777776664222222 22555566666555555555544444444
Q ss_pred HHH
Q psy16002 155 MQS 157 (229)
Q Consensus 155 ~Qs 157 (229)
.|.
T Consensus 126 ~Ql 128 (132)
T PF07926_consen 126 DQL 128 (132)
T ss_pred HHH
Confidence 443
No 39
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.42 E-value=3.2e+02 Score=30.12 Aligned_cols=18 Identities=6% Similarity=0.211 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhhccc
Q psy16002 204 VQHLKQRIVSLEEHIARY 221 (229)
Q Consensus 204 v~~L~~~~~~LE~~~~~~ 221 (229)
+..+...+..|..++..-
T Consensus 993 ~~~l~~~i~~l~kel~~~ 1010 (1311)
T TIGR00606 993 QEKINEDMRLMRQDIDTQ 1010 (1311)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555554433
No 40
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=54.80 E-value=69 Score=29.89 Aligned_cols=37 Identities=32% Similarity=0.546 Sum_probs=30.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhH
Q psy16002 78 QELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACE 114 (229)
Q Consensus 78 QEL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq 114 (229)
-++|.|||...++|.+++.+.+||..|-.++..+.|.
T Consensus 128 ~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e 164 (290)
T COG4026 128 PEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAE 164 (290)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999998876666544443
No 41
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=54.54 E-value=1.2e+02 Score=24.86 Aligned_cols=63 Identities=22% Similarity=0.309 Sum_probs=50.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcCCCchhhhHHHHHHHHHHHHHHHHH
Q psy16002 76 LMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMSQTLER 145 (229)
Q Consensus 76 imQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq~a~lt~~lsRe~~Lk~rlqeL~~~Le~ 145 (229)
+.--|.++-..+.+.|.-...+-++|..|+-.+..+.+|..+ .-.|..+|++.|-++...|+.
T Consensus 14 l~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s-------~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 14 LQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNAS-------RNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 344577888888888888888899999999999888888776 244778889999998888875
No 42
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=54.40 E-value=53 Score=29.76 Aligned_cols=40 Identities=28% Similarity=0.405 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q psy16002 74 AVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLAC 113 (229)
Q Consensus 74 avimQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~a 113 (229)
+-|.+-|..+...++.+..++..+++|+..+..|...+..
T Consensus 211 ~rL~~~l~~le~~~~~~~~~l~~l~~E~~~I~~re~elq~ 250 (254)
T PF15458_consen 211 ERLRESLSSLEDSKSQLQQQLESLEKEKEEIEEREKELQE 250 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888999999999999999999999999988765543
No 43
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=53.35 E-value=1.2e+02 Score=27.28 Aligned_cols=56 Identities=9% Similarity=0.194 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHH
Q psy16002 135 RLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLE 190 (229)
Q Consensus 135 rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLE 190 (229)
.|.+.+..++.....-...+......+..+.+.....-..++.||++|+..+++.+
T Consensus 83 ~L~~~~~~~~~f~~~qk~~rKk~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~ 138 (240)
T cd07672 83 TLRDEAKKMEDFRERQKLARKKIELIMDAIHKQRAMQFKKTMESKKNYEQKCRDKD 138 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443333444433333344445556666666666666667777777777776654
No 44
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=52.02 E-value=1.4e+02 Score=26.72 Aligned_cols=65 Identities=20% Similarity=0.330 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy16002 129 ENKLRERLKEMSQTL-ERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIV 194 (229)
Q Consensus 129 e~~Lk~rlqeL~~~L-e~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~ 194 (229)
...|+.+|-.|...| .++..+-+..+.-..++ -++.-.+..|...+++=+-+|++|++-||.+..
T Consensus 84 ~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l-~~~~~r~~el~~~r~~e~~~YesRI~dLE~~L~ 149 (196)
T PF15272_consen 84 SEDLQSRISNLEKQLVDQMIEKDREIRTLQDEL-LSLELRNKELQNERERERIAYESRIADLERQLN 149 (196)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666 44444444444333333 445556667777777777788888888887754
No 45
>PRK11637 AmiB activator; Provisional
Probab=51.92 E-value=2.2e+02 Score=27.13 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=6.0
Q ss_pred HHHHHHHhhhHHHH
Q psy16002 159 QLTNELKMANNALM 172 (229)
Q Consensus 159 Elv~dL~kAnsaLv 172 (229)
.++.++......|.
T Consensus 170 ~~l~~l~~~~~~L~ 183 (428)
T PRK11637 170 ETIAELKQTREELA 183 (428)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 46
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.91 E-value=3.8e+02 Score=29.60 Aligned_cols=31 Identities=10% Similarity=-0.075 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhhhhhH
Q psy16002 74 AVLMQELLSMREDKAELRARIYNLEHEKDVL 104 (229)
Q Consensus 74 avimQEL~a~RE~~aeLk~~l~llEkEK~~l 104 (229)
..|..++-+...++..+...+..+..+...+
T Consensus 825 ~ele~ei~~~~~el~~l~~~~e~l~~e~e~~ 855 (1311)
T TIGR00606 825 QQVNQEKQEKQHELDTVVSKIELNRKLIQDQ 855 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433333333333
No 47
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=50.15 E-value=1.8e+02 Score=25.50 Aligned_cols=77 Identities=19% Similarity=0.269 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy16002 132 LRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLK 208 (229)
Q Consensus 132 Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~rh~~qv~~L~ 208 (229)
+++++.++-..|.......+.-.+....+..+-..-.+....++.....|-..+---||+.|..|.+.-+..-+-|.
T Consensus 91 ~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~ 167 (201)
T PF13851_consen 91 LKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLN 167 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555566666666666666666666667777778888888888899999888876655444443
No 48
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=50.14 E-value=91 Score=23.69 Aligned_cols=94 Identities=22% Similarity=0.244 Sum_probs=52.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16002 79 ELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMSQTLERVSRTYELRQMQST 158 (229)
Q Consensus 79 EL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq~a~lt~~lsRe~~Lk~rlqeL~~~Le~~~k~~e~r~~Qsa 158 (229)
+|.++=+++..+..++..+++.++.+--++..- -+.. ++++-.. ....+..++..|..........-..+.
T Consensus 38 ~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~~~--~~~~---~l~~~~~----~~~~l~~~~~~l~~~~~~~~~~n~~N~ 108 (143)
T PF05130_consen 38 ELEELVEEKQELLEELRELEKQRQQLLAKLGAE--PEEA---TLSELIE----EREELQALWRELRELLEELQELNERNQ 108 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----SCHH---HHHHHHC----CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--cccc---cHHHHHh----ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666666766666655554444322 0000 0100000 344566666666666666777777788
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhh
Q psy16002 159 QLTNELKMANNALMNSFEKGKKK 181 (229)
Q Consensus 159 Elv~dL~kAnsaLv~afe~AKrK 181 (229)
.++......++.++..|.++.+.
T Consensus 109 ~ll~~~~~~~~~~l~~l~~~~~~ 131 (143)
T PF05130_consen 109 QLLEQALEFVQQLLNLLQPARKQ 131 (143)
T ss_dssp HHHHHCCHHHHHHHHHCCH----
T ss_pred HHHHHHHHHHHHHHHHHhcCCCC
Confidence 88888888888888888777654
No 49
>PRK09039 hypothetical protein; Validated
Probab=47.61 E-value=2.5e+02 Score=26.50 Aligned_cols=122 Identities=21% Similarity=0.285 Sum_probs=51.6
Q ss_pred HhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16002 82 SMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMSQTLERVSRTYELRQMQSTQLT 161 (229)
Q Consensus 82 a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq~a~lt~~lsRe~~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv 161 (229)
.+.+.+++|..++..++.++..|+-..+.... ..++...|...|...|.+..+........-..-.+|.+.|=
T Consensus 78 ~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~-------~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr 150 (343)
T PRK09039 78 DLQDSVANLRASLSAAEAERSRLQALLAELAG-------AGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALR 150 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------hcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34455555556666666655555544331110 01111223333333333333333333332223333333332
Q ss_pred HHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16002 162 NELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRI 211 (229)
Q Consensus 162 ~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~rh~~qv~~L~~~~ 211 (229)
..|..-..+|. +.+.--+-++.++..|++.+...-++-..++..++..+
T Consensus 151 ~Qla~le~~L~-~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 151 RQLAALEAALD-ASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 22333332222 22223355566666666666666555555555554444
No 50
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=46.78 E-value=3.8e+02 Score=28.40 Aligned_cols=13 Identities=0% Similarity=-0.192 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhhH
Q psy16002 21 EMQLLLNNIDKLD 33 (229)
Q Consensus 21 d~~rLr~yi~~Lk 33 (229)
|.....+|++..-
T Consensus 216 d~~~~~~~~~~~~ 228 (717)
T PF09730_consen 216 DDEEENGGLNGGP 228 (717)
T ss_pred chhhhcchhhccc
Confidence 5567777766653
No 51
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=46.14 E-value=62 Score=25.96 Aligned_cols=34 Identities=26% Similarity=0.454 Sum_probs=26.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16002 178 GKKKSQSRLKRLENEIVIMSERHATQVQHLKQRI 211 (229)
Q Consensus 178 AKrK~q~r~kKLEqQm~~M~~rh~~qv~~L~~~~ 211 (229)
.++++.+|+++|-.++..=...|..+++.|+..|
T Consensus 66 ~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 66 FRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678888999998888887777888887777655
No 52
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=44.22 E-value=2e+02 Score=25.80 Aligned_cols=61 Identities=20% Similarity=0.232 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--------------------HHHHHhhhhhhHHHHHHH
Q psy16002 130 NKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNAL--------------------MNSFEKGKKKSQSRLKRL 189 (229)
Q Consensus 130 ~~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaL--------------------v~afe~AKrK~q~r~kKL 189 (229)
..+...|...+..|+...++.+.-+..+..--..+..|...+ -..|++++.||+.+..++
T Consensus 120 ~~lq~el~~~~~eL~k~kK~Y~~~~~ea~~A~~K~~~ae~~~~k~~~~~~~~~~~~~~~~~~~~~~eK~k~k~~~~~~k~ 199 (241)
T cd07656 120 SQLHDELLRVLNELQTAMKTYHTYHAESKSAERKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAKYSEAKLKC 199 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777778888888888888877666666666666554 377788888887766554
Q ss_pred H
Q psy16002 190 E 190 (229)
Q Consensus 190 E 190 (229)
.
T Consensus 200 ~ 200 (241)
T cd07656 200 T 200 (241)
T ss_pred H
Confidence 3
No 53
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=44.08 E-value=2e+02 Score=26.10 Aligned_cols=17 Identities=12% Similarity=0.239 Sum_probs=8.2
Q ss_pred HHHHhhhhhhHHHHHHH
Q psy16002 173 NSFEKGKKKSQSRLKRL 189 (229)
Q Consensus 173 ~afe~AKrK~q~r~kKL 189 (229)
.++++||++|....+..
T Consensus 130 ~~~~KaK~~Y~~~c~e~ 146 (269)
T cd07673 130 QALQKSKENYNAKCLEQ 146 (269)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555444433
No 54
>KOG0963|consensus
Probab=43.35 E-value=4.1e+02 Score=27.83 Aligned_cols=159 Identities=19% Similarity=0.176 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhhHhhhhhhccCcccCCCcccccCCCCCCCCchhh-hccCchHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy16002 19 KAEMQLLLNNIDKLDKERASIGNTTVKLESYHVAISEAPKVPKSSSE-ARKMDLEMAVLMQELLSMREDKAELRARIYNL 97 (229)
Q Consensus 19 ~ed~~rLr~yi~~Lk~~Ra~vk~t~v~Les~~~~~~p~~~~~~a~~~-~q~~dLE~avimQEL~a~RE~~aeLk~~l~ll 97 (229)
.|.+.-|++--+.+.+.=.....++-++.+-.-+ .++.+.+ .+.-|.|.+--.-|++-+=-++++-..+++.+
T Consensus 181 ~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~------t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~l 254 (629)
T KOG0963|consen 181 AEREAGLKDEEQNLQEQLEELEKKISSLQSAIED------TQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFL 254 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444544444444444444443333 1222222 34557777777788888888899999999999
Q ss_pred HhhhhhHHHHHHHHHhHHhhhhcCCCchhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy16002 98 EHEKDVLEMKLNSLACEELTQHAGDTDDKS---VENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNS 174 (229)
Q Consensus 98 EkEK~~lElr~~~~~aq~~aq~a~lt~~ls---Re~~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~a 174 (229)
|+|...|.-+++...+-... +..++... -....-.-|+.|...++.+......-..-++.-|++|-+-+.+....
T Consensus 255 E~e~e~L~~ql~~~N~~~~~--~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~ 332 (629)
T KOG0963|consen 255 EREVEQLREQLAKANSSKKL--AKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISE 332 (629)
T ss_pred HHHHHHHHHHHHhhhhhhhh--ccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888643322222 11111111 11112233556666666665555555555555555555555555555
Q ss_pred HHhhhhhhHHH
Q psy16002 175 FEKGKKKSQSR 185 (229)
Q Consensus 175 fe~AKrK~q~r 185 (229)
++.-++|-+.+
T Consensus 333 leel~~kL~~~ 343 (629)
T KOG0963|consen 333 LEELKEKLNSR 343 (629)
T ss_pred HHHHHHHHhhh
Confidence 55556555544
No 55
>PRK10884 SH3 domain-containing protein; Provisional
Probab=42.42 E-value=2.5e+02 Score=24.95 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16002 128 VENKLRERLKEMSQTLERVSRTYELRQ 154 (229)
Q Consensus 128 Re~~Lk~rlqeL~~~Le~~~k~~e~r~ 154 (229)
|-.+|+.++.+|...|..+......+.
T Consensus 94 rlp~le~el~~l~~~l~~~~~~~~~~~ 120 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNTWNQRT 120 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 444666667777766666665544333
No 56
>KOG0048|consensus
Probab=41.49 E-value=22 Score=31.50 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=17.3
Q ss_pred CCCCCHHHHHHHHHHHHhh
Q psy16002 14 DRPDDKAEMQLLLNNIDKL 32 (229)
Q Consensus 14 ~~~~~~ed~~rLr~yi~~L 32 (229)
.++|++|++..|..||.+-
T Consensus 9 kGpWt~EED~~L~~~V~~~ 27 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSF 27 (238)
T ss_pred CCCCChHHHHHHHHHHHHh
Confidence 5899999999999999764
No 57
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=38.78 E-value=4.9e+02 Score=27.33 Aligned_cols=45 Identities=31% Similarity=0.422 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHH--------------HHHHHhhhhhHHHHHHHHHhHHhh
Q psy16002 73 MAVLMQELLSMREDKAELRAR--------------IYNLEHEKDVLEMKLNSLACEELT 117 (229)
Q Consensus 73 ~avimQEL~a~RE~~aeLk~~--------------l~llEkEK~~lElr~~~~~aq~~a 117 (229)
..-+-=||-++|-.=.||+.+ |..+++|...|+-++..+....+.
T Consensus 427 vkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~ 485 (697)
T PF09726_consen 427 VKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQ 485 (697)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334677777777777777777 556677777777777666555554
No 58
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.59 E-value=3.4e+02 Score=25.41 Aligned_cols=37 Identities=24% Similarity=0.369 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q psy16002 182 SQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEHI 218 (229)
Q Consensus 182 ~q~r~kKLEqQm~~M~~rh~~qv~~L~~~~~~LE~~~ 218 (229)
-+..+++|+.+|....++=..+-..|+.|+|++-..+
T Consensus 78 ~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG 114 (265)
T COG3883 78 SKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNG 114 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3556788899999999999999999999999987643
No 59
>KOG0994|consensus
Probab=38.41 E-value=6.8e+02 Score=28.89 Aligned_cols=183 Identities=16% Similarity=0.145 Sum_probs=0.0
Q ss_pred hhhccCCCCCHHHHHHHHHHHHhhHhhhhhhccCcccCCCcccccCCCCCCCCchhhhccCchHHHHHHHHHH----Hhh
Q psy16002 9 LHTLQDRPDDKAEMQLLLNNIDKLDKERASIGNTTVKLESYHVAISEAPKVPKSSSEARKMDLEMAVLMQELL----SMR 84 (229)
Q Consensus 9 ~~~~~~~~~~~ed~~rLr~yi~~Lk~~Ra~vk~t~v~Les~~~~~~p~~~~~~a~~~~q~~dLE~avimQEL~----a~R 84 (229)
.+.| +.+..-|-.-+++|..+-..++.|.| -|++-. .+..|+ ||-.+.+.++ -..
T Consensus 1166 F~~W------D~il~~L~~rt~rl~~~A~~l~~tGv--~gay~s------------~f~~me-~kl~~ir~il~~~svs~ 1224 (1758)
T KOG0994|consen 1166 FQTW------DAILQELALRTHRLINRAKELKQTGV--LGAYAS------------RFLDME-EKLEEIRAILSAPSVSA 1224 (1758)
T ss_pred HHHH------HHHHHHHHHHHHHHHHHHHHhhhccC--chhhHh------------HHHHHH-HHHHHHHHHhcCCCccH
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcCCC------chhhh-HHHHHHHHHHHHHHHHHHH--------HH
Q psy16002 85 EDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDT------DDKSV-ENKLRERLKEMSQTLERVS--------RT 149 (229)
Q Consensus 85 E~~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq~a~lt------~~lsR-e~~Lk~rlqeL~~~Le~~~--------k~ 149 (229)
+++++|-..+..|+|+-.++-+++...+.-..---..+. ++|-| ...|..-.++|...++++. ..
T Consensus 1225 ~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~sdi~GA~~~ 1304 (1758)
T KOG0994|consen 1225 EDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKESDILGAFNS 1304 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy16002 150 YELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLE 215 (229)
Q Consensus 150 ~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~rh~~qv~~L~~~~~~LE 215 (229)
.+.-+.||++.-+-.-.|+..|..+.+++ +-+..+-|-+.+-.. ......-+..|......|+
T Consensus 1305 ~r~a~~~s~ea~~r~~~s~~~l~s~~~~s--R~e~l~~k~k~~f~~-~~~n~~~L~el~~~l~sL~ 1367 (1758)
T KOG0994|consen 1305 TRHAYEQSAEAERRVDASSRELASLVDQS--RVEELLVKQKGDFGG-LAENSRLLVELRAELSSLP 1367 (1758)
T ss_pred HHHHHHHHHHHHHhhhhhhhcccchhhhh--HHHHHHHHhhhcccc-cccccHHHHHHHHHhcCCC
No 60
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=37.90 E-value=2.7e+02 Score=24.13 Aligned_cols=91 Identities=19% Similarity=0.190 Sum_probs=0.0
Q ss_pred chhhhccCchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcCCCchhhhHHHHHHHHHHHHH
Q psy16002 62 SSSEARKMDLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMSQ 141 (229)
Q Consensus 62 a~~~~q~~dLE~avimQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq~a~lt~~lsRe~~Lk~rlqeL~~ 141 (229)
|........-.-.-+..++..++..+++|+.++..+..++..-+.|.. -+.+-..|+.++.+|..
T Consensus 60 ps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~---------------~l~~l~~l~~~~~~l~~ 124 (188)
T PF03962_consen 60 PSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREE---------------LLEELEELKKELKELKK 124 (188)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHH---------------HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16002 142 TLERVSRTYELRQMQSTQLTNELKMA 167 (229)
Q Consensus 142 ~Le~~~k~~e~r~~QsaElv~dL~kA 167 (229)
.|+......-.+.++..+-+..++.+
T Consensus 125 el~~~~~~Dp~~i~~~~~~~~~~~~~ 150 (188)
T PF03962_consen 125 ELEKYSENDPEKIEKLKEEIKIAKEA 150 (188)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHH
No 61
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=37.87 E-value=2.4e+02 Score=24.49 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16002 131 KLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMA 167 (229)
Q Consensus 131 ~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kA 167 (229)
++...++.....+++..++.+..|......-..+.++
T Consensus 116 kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~ 152 (251)
T cd07653 116 KLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKA 152 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555554444444443
No 62
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=37.63 E-value=4e+02 Score=26.06 Aligned_cols=95 Identities=21% Similarity=0.167 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Q psy16002 84 REDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMSQTLERVSRT-------YELRQMQ 156 (229)
Q Consensus 84 RE~~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq~a~lt~~lsRe~~Lk~rlqeL~~~Le~~~k~-------~e~r~~Q 156 (229)
.+.+++|+.+|..++.+.+.++-+..+..++..- |+.+.......... .=..-.+
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~------------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLEDRGDALKALAKF------------------LEDIREGLTEPIKDSAKRNEPDLKEWFQ 131 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHhhhhccccccccccCCCCHHHHHH
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy16002 157 STQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIM 196 (229)
Q Consensus 157 saElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M 196 (229)
...++.+=...-++-...++...++.+.++.+|++++..+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 132 AFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 63
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=36.11 E-value=4.7e+02 Score=26.44 Aligned_cols=67 Identities=12% Similarity=0.235 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q psy16002 132 LRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSE 198 (229)
Q Consensus 132 Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~ 198 (229)
|=+++.++...++.+.+..+.-.+++..|-.....-+...-+|++.++.-.+.+..+|..++..+..
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~ 130 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQG 130 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666677766666666666777888888887777777777777655443
No 64
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=35.51 E-value=4e+02 Score=25.46 Aligned_cols=89 Identities=20% Similarity=0.203 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHhhHhhhhhhccCcccCCCcccccCCCCCCCCchhhhccCchHHHHHHHHHHHhhHHHH-------HH
Q psy16002 18 DKAEMQLLLNNIDKLDKERASIGNTTVKLESYHVAISEAPKVPKSSSEARKMDLEMAVLMQELLSMREDKA-------EL 90 (229)
Q Consensus 18 ~~ed~~rLr~yi~~Lk~~Ra~vk~t~v~Les~~~~~~p~~~~~~a~~~~q~~dLE~avimQEL~a~RE~~a-------eL 90 (229)
|-.+-.+.+--+-.|+.+...++.+.-++.-. ++-++.|.-+. .=++.-+-|-|..+||.+- +|
T Consensus 21 cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~-~~~~~d~~~~~--------~~~~~~La~lL~~sre~Nk~L~~Ev~~L 91 (319)
T PF09789_consen 21 CQSERDQYKLMAEQLQERYQALKKKYRELIQE-AAGFGDPSIPP--------EKENKNLAQLLSESREQNKKLKEEVEEL 91 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hcccCCccCCc--------ccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666777777777777776544310 11112111111 1155666666777777655 45
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhHH
Q psy16002 91 RARIYNLEHEKDVLEMKLNSLACEE 115 (229)
Q Consensus 91 k~~l~llEkEK~~lElr~~~~~aq~ 115 (229)
+.++..++.+-..|-.+++..++..
T Consensus 92 rqkl~E~qGD~KlLR~~la~~r~~~ 116 (319)
T PF09789_consen 92 RQKLNEAQGDIKLLREKLARQRVGD 116 (319)
T ss_pred HHHHHHHhchHHHHHHHHHhhhhhh
Confidence 5555666666666666666554444
No 65
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=35.23 E-value=5.5e+02 Score=26.96 Aligned_cols=99 Identities=23% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcCCCchhhhHHHHHHHHHHHHHHHHHHHH-HH
Q psy16002 72 EMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMSQTLERVSR-TY 150 (229)
Q Consensus 72 E~avimQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq~a~lt~~lsRe~~Lk~rlqeL~~~Le~~~k-~~ 150 (229)
++..-+++|..+++++..|...-..+. .=++.+ ..+...|-.|++.++..+..... .+
T Consensus 573 ~~e~Ql~~L~~l~e~~~~l~~~ae~La-------------eR~e~a--------~d~Qe~L~~R~~~vl~~l~~~~P~LS 631 (717)
T PF10168_consen 573 QKEQQLKELQELQEERKSLRESAEKLA-------------ERYEEA--------KDKQEKLMKRVDRVLQLLNSQLPVLS 631 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHH--------HHHHHHHHHHHHHHHHHHhccCCCCC
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHH
Q psy16002 151 ELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENE 192 (229)
Q Consensus 151 e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQ 192 (229)
++-++-..||- .+...-..|...++.+|+|.+-|..++++|
T Consensus 632 ~AEr~~~~EL~-~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~ 672 (717)
T PF10168_consen 632 EAEREFKKELE-RMKDQLQDLKASIEQLKKKLDYQQRQIESQ 672 (717)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 66
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=34.72 E-value=3.4e+02 Score=24.30 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=11.0
Q ss_pred HHHHHhhhhhhHHHHHHHHH
Q psy16002 172 MNSFEKGKKKSQSRLKRLEN 191 (229)
Q Consensus 172 v~afe~AKrK~q~r~kKLEq 191 (229)
..++++||++|...++..|.
T Consensus 122 ~~~l~kaK~~Y~~~cke~e~ 141 (261)
T cd07674 122 SQHLQKSRENYHSKCVEQER 141 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555666666655555443
No 67
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=34.65 E-value=6.6e+02 Score=27.65 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=23.9
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Q psy16002 175 FEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEHIAR 220 (229)
Q Consensus 175 fe~AKrK~q~r~kKLEqQm~~M~~rh~~qv~~L~~~~~~LE~~~~~ 220 (229)
.+.....++.....+.++..........+...++..+..|+.....
T Consensus 415 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 460 (1201)
T PF12128_consen 415 REQIEEEYQALEQELRQQSQEQLEELQEQREQLKSELAELKQQLKN 460 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3333333444444444444455555666666666666666555443
No 68
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=34.25 E-value=1.6e+02 Score=20.28 Aligned_cols=30 Identities=30% Similarity=0.469 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy16002 184 SRLKRLENEIVIMSERHATQVQHLKQRIVSLEEH 217 (229)
Q Consensus 184 ~r~kKLEqQm~~M~~rh~~qv~~L~~~~~~LE~~ 217 (229)
.....||+++..+ ..+...|.+.|..|+.+
T Consensus 25 ~~~~~le~~~~~L----~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 25 QREEELEQEVQEL----EEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHhcc
Confidence 3344445555444 46777889999888764
No 69
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=34.21 E-value=3.3e+02 Score=24.04 Aligned_cols=25 Identities=12% Similarity=0.372 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16002 134 ERLKEMSQTLERVSRTYELRQMQST 158 (229)
Q Consensus 134 ~rlqeL~~~Le~~~k~~e~r~~Qsa 158 (229)
..++.....+++..++.+..|....
T Consensus 116 ~~~~~~~~~l~KaK~~Y~~~c~e~e 140 (261)
T cd07648 116 QAIQTTTAALQKAKEAYHARCLELE 140 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554443
No 70
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=34.12 E-value=1.9e+02 Score=21.25 Aligned_cols=39 Identities=15% Similarity=0.332 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy16002 74 AVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLA 112 (229)
Q Consensus 74 avimQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~ 112 (229)
-.|..||-.++.++..+..+++.+++-.+.|+..+..+.
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~ 52 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLK 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888888888888888877777766666543
No 71
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=34.12 E-value=3.6e+02 Score=24.48 Aligned_cols=28 Identities=18% Similarity=0.412 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy16002 188 RLENEIVIMSERHATQVQHLKQRIVSLE 215 (229)
Q Consensus 188 KLEqQm~~M~~rh~~qv~~L~~~~~~LE 215 (229)
++..|-..+...+......+...|..|+
T Consensus 270 k~~eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 270 KLQEQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3334444556666666666666666653
No 72
>PRK02224 chromosome segregation protein; Provisional
Probab=34.11 E-value=5.4e+02 Score=26.53 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=19.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy16002 76 LMQELLSMREDKAELRARIYNLEHEKDVLEMKLN 109 (229)
Q Consensus 76 imQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~ 109 (229)
+...|-..+.+++++..++..++.++..++-.+.
T Consensus 204 l~~~l~~~~~~l~el~~~i~~~~~~~~~l~~~l~ 237 (880)
T PRK02224 204 LHERLNGLESELAELDEEIERYEEQREQARETRD 237 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666666666666666655555555444
No 73
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.
Probab=33.21 E-value=71 Score=24.47 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q psy16002 128 VENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKG 178 (229)
Q Consensus 128 Re~~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~A 178 (229)
+++.++.+|+.+. ......+++.+|..+|..|+.+|.+=
T Consensus 49 ~ck~~r~~i~~li------------~~~~dee~l~~lL~~ND~L~~~l~~Y 87 (100)
T PF03127_consen 49 SCKSMRPRIQRLI------------EEVEDEELLGELLQANDELNQALERY 87 (100)
T ss_dssp HHHHHHHHHHHHH------------HTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------------hhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666555 22334569999999999999999753
No 74
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=32.72 E-value=4.6e+02 Score=25.23 Aligned_cols=102 Identities=15% Similarity=0.190 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcCCCch----hhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q psy16002 84 REDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDD----KSVENKLRERLKEMSQTLERVSR---TYELRQMQ 156 (229)
Q Consensus 84 RE~~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq~a~lt~~----lsRe~~Lk~rlqeL~~~Le~~~k---~~e~r~~Q 156 (229)
|-+.-|=+..+.-+.+-+.+++-......++..--+..++.. .+||+-|-.|+..++..+-.... ....+|.|
T Consensus 212 ~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~ 291 (359)
T PF10498_consen 212 RADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQ 291 (359)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555544444444433333333211111111 45888887777777766555443 45667777
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhhhhHHH
Q psy16002 157 STQLTNELKMANNALMNSFEKGKKKSQSR 185 (229)
Q Consensus 157 saElv~dL~kAnsaLv~afe~AKrK~q~r 185 (229)
.-+-|.++-+.-+.+..-++..|..=++|
T Consensus 292 ~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 292 ASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77888888777777888777777654444
No 75
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=32.51 E-value=1.3e+02 Score=23.27 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHH
Q psy16002 73 MAVLMQELLSMREDKAELRARIYNLEHEKDVLEM 106 (229)
Q Consensus 73 ~avimQEL~a~RE~~aeLk~~l~llEkEK~~lEl 106 (229)
++.|.++..++++.+.+|..++..++.|-..|.-
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~ 51 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLES 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999998887766553
No 76
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=32.46 E-value=4.2e+02 Score=24.71 Aligned_cols=68 Identities=15% Similarity=0.284 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Q psy16002 131 KLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSER 199 (229)
Q Consensus 131 ~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~r 199 (229)
++...|..|...++...+....-..+....-.-|.+|+. |+.+|.+=+.+-+..+..|+.++..+.-.
T Consensus 246 ~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~-Li~~L~~E~~RW~~~~~~l~~~~~~l~GD 313 (344)
T PF12777_consen 246 ELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEK-LISGLSGEKERWSEQIEELEEQLKNLVGD 313 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHCCHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH-HHhhhcchhhhHHHHHHHHHHHhcccHHH
Confidence 345556666666665555444444444444445556654 88888888888888888888888766543
No 77
>KOG0996|consensus
Probab=32.11 E-value=8.1e+02 Score=27.91 Aligned_cols=88 Identities=25% Similarity=0.268 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhhHhhhhhhccCcccCCCcccccCCCCCCCCchhhhc-----------cCchHHHHHHHHHHHhhHHH
Q psy16002 19 KAEMQLLLNNIDKLDKERASIGNTTVKLESYHVAISEAPKVPKSSSEAR-----------KMDLEMAVLMQELLSMREDK 87 (229)
Q Consensus 19 ~ed~~rLr~yi~~Lk~~Ra~vk~t~v~Les~~~~~~p~~~~~~a~~~~q-----------~~dLE~avimQEL~a~RE~~ 87 (229)
+++.+.|++|==-|.--|=++=.--| |++-. |-|.++.++-.++.- .+.|+ .+|+++--+-|..
T Consensus 209 ~~V~~lLk~~gIDleHNRFLILQGEV--E~IA~-MKPk~~~e~d~GmLEYLEDIIGT~ry~~~I~--~~~~rv~~L~e~~ 283 (1293)
T KOG0996|consen 209 KDVTKLLKSHGIDLEHNRFLILQGEV--EQIAM-MKPKAQTENDEGMLEYLEDIIGTNRYKEPIE--ELMRRVERLNEDR 283 (1293)
T ss_pred HHHHHHHHhcCCCCccceeeeehhhH--HHHHh-cCCCCCCCCcchHHHHHHHHhcccccchhHH--HHHHHHHhhhHHH
Confidence 67788887765444444443322112 33321 235555566555522 45665 5899999999999
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHH
Q psy16002 88 AELRARIYNLEHEKDVLEMKLNSL 111 (229)
Q Consensus 88 aeLk~~l~llEkEK~~lElr~~~~ 111 (229)
.+--.++.++++|+..||-....-
T Consensus 284 sek~~~~k~~e~ek~~lE~~k~~a 307 (1293)
T KOG0996|consen 284 SEKENRVKLVEKEKKALEGPKNEA 307 (1293)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999999999877533
No 78
>PRK10698 phage shock protein PspA; Provisional
Probab=32.00 E-value=3.6e+02 Score=23.86 Aligned_cols=42 Identities=14% Similarity=0.079 Sum_probs=31.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhh
Q psy16002 76 LMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELT 117 (229)
Q Consensus 76 imQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq~~a 117 (229)
+..+|...|..++..++.-..+++....++.....+..+...
T Consensus 36 m~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~ 77 (222)
T PRK10698 36 MEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAEL 77 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566778889998888888888888888888766544444
No 79
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=31.81 E-value=15 Score=38.56 Aligned_cols=136 Identities=22% Similarity=0.318 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcCCCchhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Q psy16002 82 SMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMSQTLER-------VSRTYELRQ 154 (229)
Q Consensus 82 a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq~a~lt~~lsRe~~Lk~rlqeL~~~Le~-------~~k~~e~r~ 154 (229)
.+..++.++...+..+++-++.+|..+.-.......-+++.+.......+|-.+|..|-..|+. ......--.
T Consensus 613 ~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~ 692 (859)
T PF01576_consen 613 ALQAELEELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQ 692 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4455556666666666666666665554221111110111111112233444444444444444 444444455
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHhh
Q psy16002 155 MQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERH----ATQVQHLKQRIVSLEEHI 218 (229)
Q Consensus 155 ~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~rh----~~qv~~L~~~~~~LE~~~ 218 (229)
.|.+.+..+|....+ -..-++..|+-.+.++|-|-.+|..+..-. ...|..|+.+|+.||..-
T Consensus 693 ~~~~~l~~eL~~Eq~-~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE~~L 759 (859)
T PF01576_consen 693 AQAAQLAEELRQEQD-HNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARIRELEEEL 759 (859)
T ss_dssp --------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHHHHH
Confidence 677777788876555 345577888888888888888888776533 367888999999888754
No 80
>KOG0977|consensus
Probab=31.79 E-value=5.9e+02 Score=26.23 Aligned_cols=142 Identities=21% Similarity=0.278 Sum_probs=89.1
Q ss_pred cCchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcCC---------------Cch-hhh---
Q psy16002 68 KMDLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGD---------------TDD-KSV--- 128 (229)
Q Consensus 68 ~~dLE~avimQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq~a~l---------------t~~-lsR--- 128 (229)
++.-=.-.=-+||..+=+.+|.-..++..||-|.+.|+..+.-++.-..-..+++ .+. ..|
T Consensus 32 ~ir~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~ 111 (546)
T KOG0977|consen 32 PIRDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKL 111 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 4443334445788889999999999999999999999999964432211111110 000 001
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-
Q psy16002 129 ---ENKLRERLKEMSQTLERVSRT------------------------YELRQMQSTQLTNELKMANNALMNSFEKGKK- 180 (229)
Q Consensus 129 ---e~~Lk~rlqeL~~~Le~~~k~------------------------~e~r~~QsaElv~dL~kAnsaLv~afe~AKr- 180 (229)
-++|+..+.+|...++...+. .-.+...+.+=+.+|++.|+-|-..|.++|+
T Consensus 112 e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 112 EIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQ 191 (546)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 125555666666555555332 2334445556677788888888888888774
Q ss_pred ---------hhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy16002 181 ---------KSQSRLKRLENEIVIMSERHATQVQHLKQ 209 (229)
Q Consensus 181 ---------K~q~r~kKLEqQm~~M~~rh~~qv~~L~~ 209 (229)
.++.+++-|...+.-|...|..++..+..
T Consensus 192 ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~ 229 (546)
T KOG0977|consen 192 LDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERR 229 (546)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 66677777777777777777777654443
No 81
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=30.59 E-value=6.2e+02 Score=26.09 Aligned_cols=22 Identities=14% Similarity=0.422 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16002 129 ENKLRERLKEMSQTLERVSRTY 150 (229)
Q Consensus 129 e~~Lk~rlqeL~~~Le~~~k~~ 150 (229)
..+++.+|..|-..+..+.++.
T Consensus 215 ~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 215 LAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554444
No 82
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=30.29 E-value=3.5e+02 Score=23.21 Aligned_cols=111 Identities=22% Similarity=0.275 Sum_probs=65.0
Q ss_pred CchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHH-------------HHhHHhhhhcC--CCchhhhHHHHH
Q psy16002 69 MDLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNS-------------LACEELTQHAG--DTDDKSVENKLR 133 (229)
Q Consensus 69 ~dLE~avimQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~~-------------~~aq~~aq~a~--lt~~lsRe~~Lk 133 (229)
.+-|.-.+.+||-.++.+.++.......+++.=+..-.|+.- +.||+.|...- |.-.-.++..|+
T Consensus 25 ~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr 104 (159)
T PF05384_consen 25 ARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLR 104 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355777889999999999999999999999888888888832 26777773311 111122444555
Q ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhH
Q psy16002 134 ER-------LKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQ 183 (229)
Q Consensus 134 ~r-------lqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q 183 (229)
.| |..|..++++.-...---.--+.=|..||. .+...++.|+.||+
T Consensus 105 ~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~----~v~~~~e~~~~~q~ 157 (159)
T PF05384_consen 105 ERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQ----QVSEQIEDAQQKQQ 157 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHhhh
Confidence 44 444444444332222222222223334443 35556677777765
No 83
>KOG4674|consensus
Probab=30.26 E-value=9.9e+02 Score=28.35 Aligned_cols=93 Identities=27% Similarity=0.351 Sum_probs=57.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhh-----------------cCCCchh-hhHHHHHHHH
Q psy16002 75 VLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQH-----------------AGDTDDK-SVENKLRERL 136 (229)
Q Consensus 75 vimQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq~-----------------a~lt~~l-sRe~~Lk~rl 136 (229)
-.-+||++-.+..+-|.+.+.-+.+|+..+-.-...+...-.+.+ -.+-.+. ....++.++|
T Consensus 728 ~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i 807 (1822)
T KOG4674|consen 728 TLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRI 807 (1822)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666655443333322222210 0011111 1456777889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16002 137 KEMSQTLERVSRTYELRQMQSTQLTNELKMA 167 (229)
Q Consensus 137 qeL~~~Le~~~k~~e~r~~QsaElv~dL~kA 167 (229)
.+|...|...-+.-+......++|.+++...
T Consensus 808 ~eL~~el~~lk~klq~~~~~~r~l~~~~~~~ 838 (1822)
T KOG4674|consen 808 KELERELQKLKKKLQEKSSDLRELTNSLEKQ 838 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 9999899888888888888888888877644
No 84
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=30.22 E-value=3.4e+02 Score=22.93 Aligned_cols=129 Identities=19% Similarity=0.289 Sum_probs=73.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16002 78 QELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMSQTLERVSRTYELRQMQS 157 (229)
Q Consensus 78 QEL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq~a~lt~~lsRe~~Lk~rlqeL~~~Le~~~k~~e~r~~Qs 157 (229)
.+|=.++-+.+-|+-++.-+|+|-...+.-......+... +..-...|+++|..+...+....-.-..-+...
T Consensus 10 ~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn-------~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk 82 (140)
T PF10473_consen 10 EKLKESESEKDSLEDHVESLERELEMSQENKECLILDAEN-------SKAEIETLEEELEELTSELNQLELELDTLRSEK 82 (140)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666667777777666665555444322222221 011123466666666666665555444444444
Q ss_pred HHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy16002 158 TQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSL 214 (229)
Q Consensus 158 aElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~rh~~qv~~L~~~~~~L 214 (229)
..+...|.+-.. =|.-|+..+--...-++.+|+....|...+-..|..|.....-|
T Consensus 83 ~~L~k~lq~~q~-kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~~ql~~L 138 (140)
T PF10473_consen 83 ENLDKELQKKQE-KVSELESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQKQLKEL 138 (140)
T ss_pred HHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444444433221 23444444444556677888888889988888888887766544
No 85
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=29.77 E-value=52 Score=21.72 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHHHHHHhhHhh-hhhhc
Q psy16002 15 RPDDKAEMQLLLNNIDKLDKE-RASIG 40 (229)
Q Consensus 15 ~~~~~ed~~rLr~yi~~Lk~~-Ra~vk 40 (229)
++||.|++..|...|...-.. .+.|-
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia 28 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIA 28 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHH
Confidence 589999999999999988777 55554
No 86
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=29.38 E-value=43 Score=34.23 Aligned_cols=45 Identities=22% Similarity=0.370 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy16002 129 ENKLRERLKEMSQTLERV---SRTYELRQMQSTQLTNELKMANNALMN 173 (229)
Q Consensus 129 e~~Lk~rlqeL~~~Le~~---~k~~e~r~~QsaElv~dL~kAnsaLv~ 173 (229)
-..|+.++..|...+++. --..+.++.+...-+.+|.+-|..|..
T Consensus 241 ~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~ 288 (713)
T PF05622_consen 241 LADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQA 288 (713)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666655544432 223344445555556677777766654
No 87
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=28.96 E-value=3.5e+02 Score=22.79 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=29.3
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy16002 175 FEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEH 217 (229)
Q Consensus 175 fe~AKrK~q~r~kKLEqQm~~M~~rh~~qv~~L~~~~~~LE~~ 217 (229)
.+....+....+++|+.++.. ...+++.|+..+..|+++
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~----~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEK----KEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhh
Confidence 445566777888888888876 677778888888877765
No 88
>PF14282 FlxA: FlxA-like protein
Probab=28.30 E-value=3e+02 Score=21.68 Aligned_cols=58 Identities=24% Similarity=0.388 Sum_probs=40.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhHH
Q psy16002 126 KSVENKLRERLKEMSQTLERVSRTY----ELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHA 201 (229)
Q Consensus 126 lsRe~~Lk~rlqeL~~~Le~~~k~~----e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~rh~ 201 (229)
...-..|+.+|+.|...|..+.... +.+..+... .+.++..|+.||+.+.....
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~----------------------Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQL----------------------LQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH
Confidence 5567889999999999998888731 333333222 35678888888887777766
Q ss_pred HHHH
Q psy16002 202 TQVQ 205 (229)
Q Consensus 202 ~qv~ 205 (229)
.+-.
T Consensus 76 ~~~~ 79 (106)
T PF14282_consen 76 EQQQ 79 (106)
T ss_pred HHHH
Confidence 6553
No 89
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=28.29 E-value=4.2e+02 Score=23.40 Aligned_cols=79 Identities=22% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16002 74 AVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMSQTLERVSRTYELR 153 (229)
Q Consensus 74 avimQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq~a~lt~~lsRe~~Lk~rlqeL~~~Le~~~k~~e~r 153 (229)
...++..-..-++..+|..++..+.+|...++........+... ++..+.+|-..++.+....+.-
T Consensus 38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~--------------q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVAS--------------QEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHh
Q psy16002 154 QMQSTQLTNELKM 166 (229)
Q Consensus 154 ~~QsaElv~dL~k 166 (229)
--.....+..|..
T Consensus 104 ~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 104 VPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHH
No 90
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=28.15 E-value=3.3e+02 Score=25.37 Aligned_cols=44 Identities=27% Similarity=0.404 Sum_probs=34.8
Q ss_pred hccCchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy16002 66 ARKMDLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLN 109 (229)
Q Consensus 66 ~q~~dLE~avimQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~ 109 (229)
.+.+.-|...+.+||..+..+..+|...+..++.|...++....
T Consensus 52 l~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~ 95 (314)
T PF04111_consen 52 LEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEE 95 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666777888888888888888888888888888888765554
No 91
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=27.98 E-value=7.7e+02 Score=26.40 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=22.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHhHHHHH
Q psy16002 170 ALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQV 204 (229)
Q Consensus 170 aLv~afe~AKrK~q~r~kKLEqQm~~M~~rh~~qv 204 (229)
.|.++.-.+=-..-++...||..+..|..+++.+.
T Consensus 155 ~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~ 189 (739)
T PF07111_consen 155 SLTQAHQEALASLTSKAEELEKSLESLETRRAGEA 189 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555566667777777777777665544
No 92
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=27.83 E-value=1.3e+02 Score=23.32 Aligned_cols=33 Identities=33% Similarity=0.345 Sum_probs=29.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHH
Q psy16002 76 LMQELLSMREDKAELRARIYNLEHEKDVLEMKL 108 (229)
Q Consensus 76 imQEL~a~RE~~aeLk~~l~llEkEK~~lElr~ 108 (229)
|..|+-.+|+-++++..++-.|+..|..+|--.
T Consensus 6 i~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~E 38 (83)
T PF14193_consen 6 IRAEIEKTKEKIAELQARLKELEAQKTEAENLE 38 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667899999999999999999999998887554
No 93
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=27.66 E-value=1.2e+02 Score=32.58 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=0.0
Q ss_pred hhhhccCchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhH
Q psy16002 63 SSEARKMDLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACE 114 (229)
Q Consensus 63 ~~~~q~~dLE~avimQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq 114 (229)
+..++-+|+|++-|-.|+-..--....++.++...|+|+.+|...+.-+.|+
T Consensus 486 ~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaE 537 (861)
T PF15254_consen 486 LENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAE 537 (861)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHH
No 94
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=27.55 E-value=6.1e+02 Score=25.05 Aligned_cols=76 Identities=22% Similarity=0.248 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH------HHhhh-------hhhHHHHHHHHHHHHHHHHhHHH
Q psy16002 136 LKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNS------FEKGK-------KKSQSRLKRLENEIVIMSERHAT 202 (229)
Q Consensus 136 lqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~a------fe~AK-------rK~q~r~kKLEqQm~~M~~rh~~ 202 (229)
|..+.++++..+..++.-.-|+..|.+.|.++.+.++.+ +|+.= ...|.++.-+-++...|.++..+
T Consensus 87 lr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~ 166 (401)
T PF06785_consen 87 LRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQT 166 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHH
Confidence 566778899999999999999999999999888754432 23222 22333444444555555555444
Q ss_pred HHHHHHHHH
Q psy16002 203 QVQHLKQRI 211 (229)
Q Consensus 203 qv~~L~~~~ 211 (229)
=.+-|..++
T Consensus 167 LnrELaE~l 175 (401)
T PF06785_consen 167 LNRELAEAL 175 (401)
T ss_pred HHHHHHHHH
Confidence 434444433
No 95
>PRK02224 chromosome segregation protein; Provisional
Probab=26.45 E-value=7.3e+02 Score=25.61 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy16002 126 KSVENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANN 169 (229)
Q Consensus 126 lsRe~~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAns 169 (229)
..+...|+.++.+|...++..-+..+.......++..++...+.
T Consensus 536 ~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (880)
T PRK02224 536 RERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNS 579 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44566778888888777777777666666666665444443333
No 96
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=26.38 E-value=4.5e+02 Score=23.08 Aligned_cols=29 Identities=7% Similarity=0.078 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16002 128 VENKLRERLKEMSQTLERVSRTYELRQMQ 156 (229)
Q Consensus 128 Re~~Lk~rlqeL~~~Le~~~k~~e~r~~Q 156 (229)
...+++...+.+....++.-...+.+..+
T Consensus 95 ~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~ 123 (204)
T PRK09174 95 QAARLKQEADAAVAAYEQELAQARAKAHS 123 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666655555544433
No 97
>KOG1853|consensus
Probab=25.99 E-value=5.9e+02 Score=24.36 Aligned_cols=72 Identities=28% Similarity=0.312 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhHH-------------HHHHHHH
Q psy16002 142 TLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHA-------------TQVQHLK 208 (229)
Q Consensus 142 ~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~rh~-------------~qv~~L~ 208 (229)
.|+.--.-..+.+.|.++.|++|-.||.-| ++|||--.--+--+||.+-.--+|.| +.|..|+
T Consensus 95 ~Leddlsqt~aikeql~kyiReLEQaNDdL----ErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLk 170 (333)
T KOG1853|consen 95 QLEDDLSQTHAIKEQLRKYIRELEQANDDL----ERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLK 170 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHH----HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344444455677889999999999999876 55666655555556665544433332 3445666
Q ss_pred HHHHHHHHh
Q psy16002 209 QRIVSLEEH 217 (229)
Q Consensus 209 ~~~~~LE~~ 217 (229)
..++.|-.+
T Consensus 171 dEardlrqe 179 (333)
T KOG1853|consen 171 DEARDLRQE 179 (333)
T ss_pred HHHHHHHHH
Confidence 666655443
No 98
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=25.82 E-value=9.8e+02 Score=26.89 Aligned_cols=86 Identities=12% Similarity=0.122 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy16002 130 NKLRERLKEMSQTLERVSRTYELR-QMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLK 208 (229)
Q Consensus 130 ~~Lk~rlqeL~~~Le~~~k~~e~r-~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~rh~~qv~~L~ 208 (229)
..|..+++++.+.++.+....--+ .++..++-.++......+....+.+..| +.+..++++++..-..+...-...+.
T Consensus 307 ~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~~~~~~~a-~~~~e~~~~~~~~~~~r~~~~~~~l~ 385 (1353)
T TIGR02680 307 EALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQAIREA-ESRLEEERRRLDEEAGRLDDAERELR 385 (1353)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666554332222 2444455566666666777777666655 77888888888888888888888877
Q ss_pred HHHHHHHH
Q psy16002 209 QRIVSLEE 216 (229)
Q Consensus 209 ~~~~~LE~ 216 (229)
+....|..
T Consensus 386 ~~~~el~~ 393 (1353)
T TIGR02680 386 AAREQLAR 393 (1353)
T ss_pred HHHHHHHH
Confidence 77776663
No 99
>PF14992 TMCO5: TMCO5 family
Probab=25.62 E-value=4.8e+02 Score=24.63 Aligned_cols=61 Identities=13% Similarity=0.249 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy16002 135 RLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIM 196 (229)
Q Consensus 135 rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M 196 (229)
.++.....++++.......-.|.+.+-.|...-+-..+.+-..+| ||++.++++|.+....
T Consensus 110 ~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~-klkE~L~rmE~ekE~~ 170 (280)
T PF14992_consen 110 SLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIK-KLKEKLRRMEEEKEML 170 (280)
T ss_pred ccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 344444444455455555555555555555444444444544554 8888888888765543
No 100
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=25.23 E-value=5.8e+02 Score=24.51 Aligned_cols=89 Identities=12% Similarity=0.191 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhhhHHHH------------HHHHhhhhhhH
Q psy16002 128 VENKLRERLKEMSQTLERVSRTYE------------LRQMQSTQLTNELKMANNALM------------NSFEKGKKKSQ 183 (229)
Q Consensus 128 Re~~Lk~rlqeL~~~Le~~~k~~e------------~r~~QsaElv~dL~kAnsaLv------------~afe~AKrK~q 183 (229)
+-..++.||.++..-.+.+.+-+. .-.....++..++..+-..+. ..|..+..+|+
T Consensus 225 ~~~~f~~Rl~~i~~i~~~~~~f~~l~~~~~~g~~g~~~~~~~~~i~~~~~~~~~~~~~~~yd~ld~~~~~~w~~~~~~f~ 304 (579)
T PF08385_consen 225 RLDAFKERLEDIKEIRETHEQFSRLLKSEFGGLRGKELSEGIDEIEEEFNEAYEPFKSLDYDILDVSNEEEWERDFSEFR 304 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCCCcchhhHHHHHHHHH
Confidence 455666665555543333333221 113334444555555444443 49999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy16002 184 SRLKRLENEIVIMSERHATQVQHLKQRIVSLEE 216 (229)
Q Consensus 184 ~r~kKLEqQm~~M~~rh~~qv~~L~~~~~~LE~ 216 (229)
.++..||.+++..-...=....+..+.+..|..
T Consensus 305 ~~i~~lE~~l~~~l~~~f~~~~s~~~~~~ll~~ 337 (579)
T PF08385_consen 305 ERIEDLERRLANILRQAFDDCSSPEEAFRLLQK 337 (579)
T ss_pred HHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 999999999998876665555666666666654
No 101
>KOG4797|consensus
Probab=24.96 E-value=1.2e+02 Score=25.32 Aligned_cols=37 Identities=35% Similarity=0.528 Sum_probs=25.8
Q ss_pred hccCchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhHH
Q psy16002 66 ARKMDLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLE 105 (229)
Q Consensus 66 ~q~~dLE~avimQEL~a~RE~~aeLk~~l~llEkEK~~lE 105 (229)
.|-|||=|..+| .|.||+..-||.+|..++--...||
T Consensus 51 eQAMDLVKtHLm---fAVREEVe~Lk~qI~eL~er~~~Le 87 (123)
T KOG4797|consen 51 EQAMDLVKTHLM---FAVREEVEVLKEQIRELEERNSALE 87 (123)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999998 3677777777777776654444433
No 102
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=24.26 E-value=97 Score=27.41 Aligned_cols=39 Identities=26% Similarity=0.435 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy16002 71 LEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLN 109 (229)
Q Consensus 71 LE~avimQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~ 109 (229)
|++|--+.|++++..++.+.+.+|..++..++.|+.+++
T Consensus 155 l~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 155 LEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 446667888999999999999999999999999998885
No 103
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=24.12 E-value=8.5e+02 Score=25.58 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHhhHhhhhhhccCcccCCCc
Q psy16002 18 DKAEMQLLLNNIDKLDKERASIGNTTVKLESY 49 (229)
Q Consensus 18 ~~ed~~rLr~yi~~Lk~~Ra~vk~t~v~Les~ 49 (229)
..+...+|..-|.+|+.+....+...-+|-+-
T Consensus 416 ~~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsq 447 (697)
T PF09726_consen 416 EPDAISRLEADVKKLRAELQSSRQSEQELRSQ 447 (697)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 45667799999999999988888777655443
No 104
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=24.01 E-value=5.4e+02 Score=23.25 Aligned_cols=103 Identities=22% Similarity=0.230 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16002 85 EDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNEL 164 (229)
Q Consensus 85 E~~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq~a~lt~~lsRe~~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL 164 (229)
|.+++++.++..+++=|..+-.-+......+- .=.+++..+..|...-..+...=+..++.--.+-+-+
T Consensus 1 e~i~~ir~K~~~lek~k~~i~~e~~~~e~ee~-----------~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iI 69 (230)
T PF10146_consen 1 EKIKEIRNKTLELEKLKNEILQEVESLENEEK-----------CLEEYRKEMEELLQERMAHVEELRQINQDINTLENII 69 (230)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888766655544443333322 1234444444444333333333333344444455556
Q ss_pred HhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Q psy16002 165 KMANNALMNSFEKGKKKSQSRLKRLENEIVIMSER 199 (229)
Q Consensus 165 ~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~r 199 (229)
+.+.+.-...++.+.++|. ....|..+|-.|...
T Consensus 70 kqa~~er~~~~~~i~r~~e-ey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 70 KQAESERNKRQEKIQRLYE-EYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 7777778888888888885 888888888888655
No 105
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=23.39 E-value=4.7e+02 Score=22.33 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHH
Q psy16002 73 MAVLMQELLSMREDKAELRAR 93 (229)
Q Consensus 73 ~avimQEL~a~RE~~aeLk~~ 93 (229)
++.++-||.++||+..+..+.
T Consensus 57 ~~qlq~dl~tLretfsNFsss 77 (138)
T PF03954_consen 57 NSQLQRDLRTLRETFSNFSSS 77 (138)
T ss_pred cHHHHHHHHHHHHHHhcccHH
Confidence 477888899999888854443
No 106
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=22.68 E-value=90 Score=25.73 Aligned_cols=21 Identities=43% Similarity=0.499 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHH
Q psy16002 86 DKAELRARIYNLEHEKDVLEM 106 (229)
Q Consensus 86 ~~aeLk~~l~llEkEK~~lEl 106 (229)
+.|+++++|-.||-|+++++-
T Consensus 26 ERaEmkarIa~LEGE~r~~e~ 46 (134)
T PF08232_consen 26 ERAEMKARIAFLEGERRGQEN 46 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999987654
No 107
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=22.58 E-value=3.5e+02 Score=24.87 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhhhHHHHHHHHhhh
Q psy16002 131 KLRERLKEMSQTLERVSRTYELRQMQSTQLT----------NELKMANNALMNSFEKGK 179 (229)
Q Consensus 131 ~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv----------~dL~kAnsaLv~afe~AK 179 (229)
.++++|..+...+++.............+-+ .+|...-.+|..||...|
T Consensus 10 pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~~~k 68 (304)
T PF02646_consen 10 PLKEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSEANGEIQQLSQEASNLTSALKNSK 68 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCC
Confidence 4555666666666655555544444444444 444444467888888444
No 108
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=22.50 E-value=4.2e+02 Score=21.46 Aligned_cols=38 Identities=11% Similarity=0.252 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Q psy16002 182 SQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEHIA 219 (229)
Q Consensus 182 ~q~r~kKLEqQm~~M~~rh~~qv~~L~~~~~~LE~~~~ 219 (229)
.-..+++..+++..+-.+|..++++.+..+..|..-..
T Consensus 22 ~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~ 59 (125)
T PF03245_consen 22 AIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLA 59 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33446667789999999999999999999999987554
No 109
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=22.38 E-value=1e+03 Score=25.97 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHH
Q psy16002 85 EDKAELRARIYNLEHEKDVLEMKL 108 (229)
Q Consensus 85 E~~aeLk~~l~llEkEK~~lElr~ 108 (229)
.....+..++..++.+...++.++
T Consensus 821 ~~~~~~~~ei~~l~~~~~~~~~~~ 844 (1163)
T COG1196 821 QRRERLEQEIEELEEEIEELEEKL 844 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444443333
No 110
>KOG3231|consensus
Probab=21.82 E-value=2.4e+02 Score=25.27 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q psy16002 155 MQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSE 198 (229)
Q Consensus 155 ~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~ 198 (229)
.+-.++.++|.++++.+ ++-.|+-+.+-|+||++|--|..
T Consensus 11 e~~ren~ReLRkt~Rdi----erdRr~me~~Ek~LElEIkk~Aa 50 (208)
T KOG3231|consen 11 EVIRENNRELRKTQRDI----ERDRRAMEKQEKQLELEIKKMAA 50 (208)
T ss_pred HHHHHhHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999998764 67788889999999999988865
No 111
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=21.77 E-value=5.3e+02 Score=22.34 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16002 128 VENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELK 165 (229)
Q Consensus 128 Re~~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~ 165 (229)
|-..|+.+++.+...++.....-...+.+...--.+|.
T Consensus 71 r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 71 RLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666666666666666666655
No 112
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=21.68 E-value=2.9e+02 Score=27.94 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy16002 181 KSQSRLKRLENEIVIMSE 198 (229)
Q Consensus 181 K~q~r~kKLEqQm~~M~~ 198 (229)
..+.++++||..+..+..
T Consensus 101 dle~KIkeLEaE~~~Lk~ 118 (475)
T PRK13729 101 DDQRRIEKLGQDNAALAE 118 (475)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344455555544444433
No 113
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=21.59 E-value=3.9e+02 Score=25.64 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=37.0
Q ss_pred hhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy16002 126 KSVEN-KLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFE 176 (229)
Q Consensus 126 lsRe~-~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe 176 (229)
+.+|. .|+++||+|+.+++.-.-.++... ...+-+.++.+.|..|-..|.
T Consensus 227 ~e~e~e~Lke~lqel~~~~e~~~~~~ee~~-~~l~~~~~fL~~NkDL~~~l~ 277 (307)
T PF15112_consen 227 LEIEMELLKEKLQELYLQAEEQEVLPEEDS-KRLEVLKEFLRNNKDLRSNLQ 277 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhhh-HHHHHHHHHHHhcHHHHHHHH
Confidence 34544 689999999888887776664333 346778899999999987774
No 114
>KOG4809|consensus
Probab=21.51 E-value=9.6e+02 Score=25.22 Aligned_cols=74 Identities=26% Similarity=0.320 Sum_probs=39.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhHHhh---------hhcC-CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16002 91 RARIYNLEHEKDVLEMKLNSLACEELT---------QHAG-DTDDKSVENKLRERLKEMSQTLERVSRTYELRQMQSTQL 160 (229)
Q Consensus 91 k~~l~llEkEK~~lElr~~~~~aq~~a---------q~a~-lt~~lsRe~~Lk~rlqeL~~~Le~~~k~~e~r~~QsaEl 160 (229)
...|.--+||.+-|-..++++++...- .|++ |. +--.++.++|.+|-=.||+ +...+-..
T Consensus 330 ~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLa---s~glk~ds~Lk~leIalEq-------kkEec~km 399 (654)
T KOG4809|consen 330 LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLA---SAGLKRDSKLKSLEIALEQ-------KKEECSKM 399 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhhhhhhHHHHHHHH-------HHHHHHHH
Confidence 345666777777777777766552211 0111 10 0111223344444444443 34556678
Q ss_pred HHHHHhhhHHHHHH
Q psy16002 161 TNELKMANNALMNS 174 (229)
Q Consensus 161 v~dL~kAnsaLv~a 174 (229)
.++|++||.++-.|
T Consensus 400 e~qLkkAh~~~dda 413 (654)
T KOG4809|consen 400 EAQLKKAHNIEDDA 413 (654)
T ss_pred HHHHHHHHHhhHhh
Confidence 88999998876554
No 115
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.33 E-value=2.5e+02 Score=19.68 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=14.0
Q ss_pred HHhhHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy16002 81 LSMREDKAELRARIYNLEHEKDVLEMKLN 109 (229)
Q Consensus 81 ~a~RE~~aeLk~~l~llEkEK~~lElr~~ 109 (229)
..++.++++|..++..++.|...|+..+.
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555544444444
No 116
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=21.27 E-value=1.1e+02 Score=18.74 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=19.5
Q ss_pred CCCCHHHHHHHHHHHHhhH-hhhhhh
Q psy16002 15 RPDDKAEMQLLLNNIDKLD-KERASI 39 (229)
Q Consensus 15 ~~~~~ed~~rLr~yi~~Lk-~~Ra~v 39 (229)
++|+.+++..|...+.... .+...|
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~I 27 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKI 27 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 5799999999999988876 554444
No 117
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=21.02 E-value=3.5e+02 Score=25.78 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHhhccccc
Q psy16002 184 SRLKRLENEIVIMSER---HATQVQHLKQRIVSLEEHIARYNS 223 (229)
Q Consensus 184 ~r~kKLEqQm~~M~~r---h~~qv~~L~~~~~~LE~~~~~~~~ 223 (229)
+++-.||..+..|... ...++..++..+..||..+.|++.
T Consensus 151 eris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNi 193 (370)
T PF02994_consen 151 ERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNI 193 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCce
Confidence 3444444444444332 234456788888888888877653
No 118
>PF11961 DUF3475: Domain of unknown function (DUF3475); InterPro: IPR021864 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 60 amino acids in length. This domain is found associated with PF05003 from PFAM.
Probab=20.65 E-value=1.2e+02 Score=22.19 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=29.6
Q ss_pred hHHHHhhhccCCCCCHHHHHHHHHHHHhhHhhhhhhcc
Q psy16002 4 TYKVLLHTLQDRPDDKAEMQLLLNNIDKLDKERASIGN 41 (229)
Q Consensus 4 ~~~~~~~~~~~~~~~~ed~~rLr~yi~~Lk~~Ra~vk~ 41 (229)
+-+-+.|-|+ ++|++...+||+.|-+..|=|.+|-.
T Consensus 9 ~msk~~~L~~--SLsd~~i~~Lr~evl~seGV~~LVS~ 44 (57)
T PF11961_consen 9 TMSKLVNLWQ--SLSDEEIARLREEVLRSEGVRKLVSD 44 (57)
T ss_pred HHHHHHHHHH--HcChHHHHHHHHHHhhhHHHHHHcCC
Confidence 4566788885 89999999999999998888877643
No 119
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=20.38 E-value=3.4e+02 Score=20.71 Aligned_cols=80 Identities=20% Similarity=0.276 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16002 131 KLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQR 210 (229)
Q Consensus 131 ~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~rh~~qv~~L~~~ 210 (229)
+|+..|+.|...|++...-.+.-.+....+..|+.+.=.. =..+-....+-...+..-+..-...|+.=-..+..=
T Consensus 1 kL~~~L~~L~~eL~~~~~ld~~~~~~L~~l~~dIe~~L~~----~~~~~~~~~~l~d~l~~av~~FE~~HP~l~~~lr~i 76 (85)
T PF14357_consen 1 KLQELLEKLHQELEQNPPLDEETRAELSSLDDDIEAQLAE----EDEAEAEDESLVDRLNEAVERFEASHPKLAGILRNI 76 (85)
T ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhc----CCcccccchhHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 4788888888888888877777788888888887653221 001122333444555566666666666555554444
Q ss_pred HHHH
Q psy16002 211 IVSL 214 (229)
Q Consensus 211 ~~~L 214 (229)
+.+|
T Consensus 77 ~~sL 80 (85)
T PF14357_consen 77 MDSL 80 (85)
T ss_pred HHHH
Confidence 4333
No 120
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=20.32 E-value=4.6e+02 Score=21.04 Aligned_cols=79 Identities=16% Similarity=0.273 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHhhhhhhHHHHHHHHH----HHHHHHHh----HHHHHHHHHHHHH
Q psy16002 142 TLERVSRTYELRQMQSTQLTNELK-MANNALMNSFEKGKKKSQSRLKRLEN----EIVIMSER----HATQVQHLKQRIV 212 (229)
Q Consensus 142 ~Le~~~k~~e~r~~QsaElv~dL~-kAnsaLv~afe~AKrK~q~r~kKLEq----Qm~~M~~r----h~~qv~~L~~~~~ 212 (229)
.++...+.|+.-..+...++.|+. +.+..+-..++..+.+-+.+..++|+ +|..+-.+ -..+++.|..+|.
T Consensus 27 ~~~~LVkkGe~~~ee~k~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~ 106 (118)
T TIGR01837 27 FFNRLVKEGELAEKRGQKRFDESVDAAREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIE 106 (118)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 445566777777778888888775 44444444455555444444445544 33333333 2367899999999
Q ss_pred HHHHhhcc
Q psy16002 213 SLEEHIAR 220 (229)
Q Consensus 213 ~LE~~~~~ 220 (229)
.||.....
T Consensus 107 ~Le~~l~~ 114 (118)
T TIGR01837 107 QLAVQVEE 114 (118)
T ss_pred HHHHHHHH
Confidence 99987643
No 121
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=20.14 E-value=3.3e+02 Score=23.84 Aligned_cols=50 Identities=24% Similarity=0.383 Sum_probs=0.0
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccccc
Q psy16002 174 SFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEHIARYNS 223 (229)
Q Consensus 174 afe~AKrK~q~r~kKLEqQm~~M~~rh~~qv~~L~~~~~~LE~~~~~~~~ 223 (229)
.+.....-++.+++.++.+|..|..|-...-+.|...-.+||.-...++.
T Consensus 190 ~i~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~qf~~me~~i~~lns 239 (239)
T PF07195_consen 190 SITSRIDSLNSQIKSLDKQIEDLEERLESKEERLRKQFSAMESLISQLNS 239 (239)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 122
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=20.05 E-value=6.4e+02 Score=22.63 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=13.9
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHH
Q psy16002 174 SFEKGKKKSQSRLKRLENEIVIMS 197 (229)
Q Consensus 174 afe~AKrK~q~r~kKLEqQm~~M~ 197 (229)
.|+-...=--..+-+||+||..|.
T Consensus 169 Ey~~~teeLR~e~s~LEeql~q~~ 192 (193)
T PF14662_consen 169 EYRSITEELRLEKSRLEEQLSQMQ 192 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333333333445667888887764
Done!